[{"scopus_import":"1","external_id":{"isi":["000517969300001"],"arxiv":["1905.08564"]},"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"intvolume":"        10","license":"https://creativecommons.org/licenses/by/4.0/","oa_version":"Published Version","article_type":"original","date_created":"2020-03-08T18:02:01Z","volume":10,"abstract":[{"text":"The relaxation of few-body quantum systems can strongly depend on the initial state when the system’s semiclassical phase space is mixed; i.e., regions of chaotic motion coexist with regular islands. In recent years, there has been much effort to understand the process of thermalization in strongly interacting quantum systems that often lack an obvious semiclassical limit. The time-dependent variational principle (TDVP) allows one to systematically derive an effective classical (nonlinear) dynamical system by projecting unitary many-body dynamics onto a manifold of weakly entangled variational states. We demonstrate that such dynamical systems generally possess mixed phase space. When TDVP errors are small, the mixed phase space leaves a footprint on the exact dynamics of the quantum model. For example, when the system is initialized in a state belonging to a stable periodic orbit or the surrounding regular region, it exhibits persistent many-body quantum revivals. As a proof of principle, we identify new types of “quantum many-body scars,” i.e., initial states that lead to long-time oscillations in a model of interacting Rydberg atoms in one and two dimensions. Intriguingly, the initial states that give rise to most robust revivals are typically entangled states. On the other hand, even when TDVP errors are large, as in the thermalizing tilted-field Ising model, initializing the system in a regular region of phase space leads to a surprising slowdown of thermalization. Our work establishes TDVP as a method for identifying interacting quantum systems with anomalous dynamics in arbitrary dimensions. Moreover, the mixed phase space classical variational equations allow one to find slowly thermalizing initial conditions in interacting models. Our results shed light on a link between classical and quantum chaos, pointing toward possible extensions of the classical Kolmogorov-Arnold-Moser theorem to quantum systems.","lang":"eng"}],"article_number":"011055","related_material":{"link":[{"url":"https://ist.ac.at/en/news/classical-physics-helps-predict-fate-of-interacting-quantum-systems/","description":"News on IST Homepage","relation":"press_release"}]},"publication_status":"published","status":"public","department":[{"_id":"MaSe"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","doi":"10.1103/physrevx.10.011055","day":"04","issue":"1","file_date_updated":"2020-07-14T12:48:00Z","oa":1,"publication":"Physical Review X","ddc":["530"],"article_processing_charge":"No","quality_controlled":"1","publication_identifier":{"issn":["2160-3308"]},"arxiv":1,"isi":1,"author":[{"orcid":"0000-0002-8443-1064","last_name":"Michailidis","id":"36EBAD38-F248-11E8-B48F-1D18A9856A87","first_name":"Alexios","full_name":"Michailidis, Alexios"},{"full_name":"Turner, C. J.","first_name":"C. J.","last_name":"Turner"},{"full_name":"Papić, Z.","last_name":"Papić","first_name":"Z."},{"last_name":"Abanin","first_name":"D. A.","full_name":"Abanin, D. A."},{"last_name":"Serbyn","first_name":"Maksym","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","full_name":"Serbyn, Maksym","orcid":"0000-0002-2399-5827"}],"title":"Slow quantum thermalization and many-body revivals from mixed phase space","date_published":"2020-03-04T00:00:00Z","type":"journal_article","has_accepted_license":"1","language":[{"iso":"eng"}],"publisher":"American Physical Society","_id":"7570","date_updated":"2023-08-18T07:01:07Z","citation":{"ista":"Michailidis A, Turner CJ, Papić Z, Abanin DA, Serbyn M. 2020. Slow quantum thermalization and many-body revivals from mixed phase space. Physical Review X. 10(1), 011055.","apa":"Michailidis, A., Turner, C. J., Papić, Z., Abanin, D. A., &#38; Serbyn, M. (2020). Slow quantum thermalization and many-body revivals from mixed phase space. <i>Physical Review X</i>. American Physical Society. <a href=\"https://doi.org/10.1103/physrevx.10.011055\">https://doi.org/10.1103/physrevx.10.011055</a>","short":"A. Michailidis, C.J. Turner, Z. Papić, D.A. Abanin, M. Serbyn, Physical Review X 10 (2020).","ieee":"A. Michailidis, C. J. Turner, Z. Papić, D. A. Abanin, and M. Serbyn, “Slow quantum thermalization and many-body revivals from mixed phase space,” <i>Physical Review X</i>, vol. 10, no. 1. American Physical Society, 2020.","ama":"Michailidis A, Turner CJ, Papić Z, Abanin DA, Serbyn M. Slow quantum thermalization and many-body revivals from mixed phase space. <i>Physical Review X</i>. 2020;10(1). doi:<a href=\"https://doi.org/10.1103/physrevx.10.011055\">10.1103/physrevx.10.011055</a>","mla":"Michailidis, Alexios, et al. “Slow Quantum Thermalization and Many-Body Revivals from Mixed Phase Space.” <i>Physical Review X</i>, vol. 10, no. 1, 011055, American Physical Society, 2020, doi:<a href=\"https://doi.org/10.1103/physrevx.10.011055\">10.1103/physrevx.10.011055</a>.","chicago":"Michailidis, Alexios, C. J. Turner, Z. Papić, D. A. Abanin, and Maksym Serbyn. “Slow Quantum Thermalization and Many-Body Revivals from Mixed Phase Space.” <i>Physical Review X</i>. American Physical Society, 2020. <a href=\"https://doi.org/10.1103/physrevx.10.011055\">https://doi.org/10.1103/physrevx.10.011055</a>."},"month":"03","file":[{"access_level":"open_access","date_updated":"2020-07-14T12:48:00Z","relation":"main_file","content_type":"application/pdf","creator":"dernst","file_id":"7581","file_size":17828638,"checksum":"4b3f2c13873d35230173c73d0e11c408","date_created":"2020-03-12T12:13:07Z","file_name":"2020_PhysicalReviewX_Michailidis.pdf"}],"year":"2020"},{"publication_status":"published","status":"public","department":[{"_id":"SiHi"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","doi":"10.7554/elife.51512","day":"11","oa":1,"main_file_link":[{"url":"https://doi.org/10.1101/751958","open_access":"1"}],"file_date_updated":"2020-09-24T07:03:20Z","scopus_import":"1","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"external_id":{"pmid":["32159512"],"isi":["000522835800001"]},"intvolume":"         9","oa_version":"Published Version","pmid":1,"article_type":"original","volume":9,"date_created":"2020-03-20T13:16:41Z","abstract":[{"lang":"eng","text":"Heterozygous loss of human PAFAH1B1 (coding for LIS1) results in the disruption of neurogenesis and neuronal migration via dysregulation of microtubule (MT) stability and dynein motor function/localization that alters mitotic spindle orientation, chromosomal segregation, and nuclear migration. Recently, human induced pluripotent stem cell (iPSC) models revealed an important role for LIS1 in controlling the length of terminal cell divisions of outer radial glial (oRG) progenitors, suggesting cellular functions of LIS1 in regulating neural progenitor cell (NPC) daughter cell separation. Here we examined the late mitotic stages NPCs in vivo and mouse embryonic fibroblasts (MEFs) in vitro from Pafah1b1-deficient mutants. Pafah1b1-deficient neocortical NPCs and MEFs similarly exhibited cleavage plane displacement with mislocalization of furrow-associated markers, associated with actomyosin dysfunction and cell membrane hyper-contractility. Thus, it suggests LIS1 acts as a key molecular link connecting MTs/dynein and actomyosin, ensuring that cell membrane contractility is tightly controlled to execute proper daughter cell separation."}],"article_number":"51512","language":[{"iso":"eng"}],"publisher":"eLife Sciences Publications","date_updated":"2023-08-18T07:06:31Z","_id":"7593","citation":{"apa":"Moon, H. M., Hippenmeyer, S., Luo, L., &#38; Wynshaw-Boris, A. (2020). LIS1 determines cleavage plane positioning by regulating actomyosin-mediated cell membrane contractility. <i>ELife</i>. eLife Sciences Publications. <a href=\"https://doi.org/10.7554/elife.51512\">https://doi.org/10.7554/elife.51512</a>","short":"H.M. Moon, S. Hippenmeyer, L. Luo, A. Wynshaw-Boris, ELife 9 (2020).","ista":"Moon HM, Hippenmeyer S, Luo L, Wynshaw-Boris A. 2020. LIS1 determines cleavage plane positioning by regulating actomyosin-mediated cell membrane contractility. eLife. 9, 51512.","mla":"Moon, Hyang Mi, et al. “LIS1 Determines Cleavage Plane Positioning by Regulating Actomyosin-Mediated Cell Membrane Contractility.” <i>ELife</i>, vol. 9, 51512, eLife Sciences Publications, 2020, doi:<a href=\"https://doi.org/10.7554/elife.51512\">10.7554/elife.51512</a>.","ama":"Moon HM, Hippenmeyer S, Luo L, Wynshaw-Boris A. LIS1 determines cleavage plane positioning by regulating actomyosin-mediated cell membrane contractility. <i>eLife</i>. 2020;9. doi:<a href=\"https://doi.org/10.7554/elife.51512\">10.7554/elife.51512</a>","ieee":"H. M. Moon, S. Hippenmeyer, L. Luo, and A. Wynshaw-Boris, “LIS1 determines cleavage plane positioning by regulating actomyosin-mediated cell membrane contractility,” <i>eLife</i>, vol. 9. eLife Sciences Publications, 2020.","chicago":"Moon, Hyang Mi, Simon Hippenmeyer, Liqun Luo, and Anthony Wynshaw-Boris. “LIS1 Determines Cleavage Plane Positioning by Regulating Actomyosin-Mediated Cell Membrane Contractility.” <i>ELife</i>. eLife Sciences Publications, 2020. <a href=\"https://doi.org/10.7554/elife.51512\">https://doi.org/10.7554/elife.51512</a>."},"month":"03","file":[{"date_updated":"2020-09-24T07:03:20Z","access_level":"open_access","success":1,"content_type":"application/pdf","relation":"main_file","file_id":"8567","creator":"dernst","file_name":"2020_elife_Moon.pdf","file_size":15089438,"checksum":"396ceb2dd10b102ef4e699666b9342c3","date_created":"2020-09-24T07:03:20Z"}],"year":"2020","publication":"eLife","ddc":["570"],"article_processing_charge":"No","quality_controlled":"1","publication_identifier":{"issn":["2050-084X"]},"isi":1,"author":[{"last_name":"Moon","first_name":"Hyang Mi","full_name":"Moon, Hyang Mi"},{"full_name":"Hippenmeyer, Simon","last_name":"Hippenmeyer","first_name":"Simon","id":"37B36620-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2279-1061"},{"first_name":"Liqun","last_name":"Luo","full_name":"Luo, Liqun"},{"full_name":"Wynshaw-Boris, Anthony","last_name":"Wynshaw-Boris","first_name":"Anthony"}],"title":"LIS1 determines cleavage plane positioning by regulating actomyosin-mediated cell membrane contractility","date_published":"2020-03-11T00:00:00Z","has_accepted_license":"1","type":"journal_article"},{"oa":1,"file_date_updated":"2020-07-14T12:48:00Z","issue":"1","project":[{"name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020","grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425"}],"day":"20","doi":"10.1103/PhysRevResearch.2.013353","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"MiLe"}],"status":"public","publication_status":"published","article_number":"013353","abstract":[{"lang":"eng","text":"The concept of the entanglement between spin and orbital degrees of freedom plays a crucial role in our understanding of various phases and exotic ground states in a broad class of materials, including orbitally ordered materials and spin liquids. We investigate how the spin-orbital entanglement in a Mott insulator depends on the value of the spin-orbit coupling of the relativistic origin. To this end, we numerically diagonalize a one-dimensional spin-orbital model with Kugel-Khomskii exchange interactions between spins and orbitals on different sites supplemented by the on-site spin-orbit coupling. In the regime of small spin-orbit coupling with regard to the spin-orbital exchange, the ground state to a large extent resembles the one obtained in the limit of vanishing spin-orbit coupling. On the other hand, for large spin-orbit coupling the ground state can, depending on the model parameters, either still show negligible spin-orbital entanglement or evolve to a highly spin-orbitally-entangled phase with completely distinct properties that are described by an effective XXZ model. The presented results suggest that (i) the spin-orbital entanglement may be induced by large on-site spin-orbit coupling, as found in the 5d transition metal oxides, such as the iridates; (ii) for Mott insulators with weak spin-orbit coupling of Ising type, such as, e.g., the alkali hyperoxides, the effects of the spin-orbit coupling on the ground state can, in the first order of perturbation theory, be neglected."}],"volume":2,"date_created":"2020-03-20T15:21:10Z","article_type":"original","oa_version":"Published Version","intvolume":"         2","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"scopus_import":"1","year":"2020","file":[{"creator":"dernst","file_id":"7610","file_size":1436735,"checksum":"1be551fd5f5583635076017d7391ffdc","date_created":"2020-03-23T10:18:38Z","file_name":"2020_PhysRevResearch_Gotfryd.pdf","date_updated":"2020-07-14T12:48:00Z","access_level":"open_access","relation":"main_file","content_type":"application/pdf"}],"month":"03","_id":"7594","citation":{"chicago":"Gotfryd, Dorota, Ekaterina Paerschke, Jiri Chaloupka, Andrzej M. Oles, and Krzysztof Wohlfeld. “How Spin-Orbital Entanglement Depends on the Spin-Orbit Coupling in a Mott Insulator.” <i>Physical Review Research</i>. American Physical Society, 2020. <a href=\"https://doi.org/10.1103/PhysRevResearch.2.013353\">https://doi.org/10.1103/PhysRevResearch.2.013353</a>.","apa":"Gotfryd, D., Paerschke, E., Chaloupka, J., Oles, A. M., &#38; Wohlfeld, K. (2020). How spin-orbital entanglement depends on the spin-orbit coupling in a Mott insulator. <i>Physical Review Research</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevResearch.2.013353\">https://doi.org/10.1103/PhysRevResearch.2.013353</a>","short":"D. Gotfryd, E. Paerschke, J. Chaloupka, A.M. Oles, K. Wohlfeld, Physical Review Research 2 (2020).","ista":"Gotfryd D, Paerschke E, Chaloupka J, Oles AM, Wohlfeld K. 2020. How spin-orbital entanglement depends on the spin-orbit coupling in a Mott insulator. Physical Review Research. 2(1), 013353.","mla":"Gotfryd, Dorota, et al. “How Spin-Orbital Entanglement Depends on the Spin-Orbit Coupling in a Mott Insulator.” <i>Physical Review Research</i>, vol. 2, no. 1, 013353, American Physical Society, 2020, doi:<a href=\"https://doi.org/10.1103/PhysRevResearch.2.013353\">10.1103/PhysRevResearch.2.013353</a>.","ama":"Gotfryd D, Paerschke E, Chaloupka J, Oles AM, Wohlfeld K. How spin-orbital entanglement depends on the spin-orbit coupling in a Mott insulator. <i>Physical Review Research</i>. 2020;2(1). doi:<a href=\"https://doi.org/10.1103/PhysRevResearch.2.013353\">10.1103/PhysRevResearch.2.013353</a>","ieee":"D. Gotfryd, E. Paerschke, J. Chaloupka, A. M. Oles, and K. Wohlfeld, “How spin-orbital entanglement depends on the spin-orbit coupling in a Mott insulator,” <i>Physical Review Research</i>, vol. 2, no. 1. American Physical Society, 2020."},"date_updated":"2024-10-21T06:02:21Z","publisher":"American Physical Society","language":[{"iso":"eng"}],"has_accepted_license":"1","type":"journal_article","date_published":"2020-03-20T00:00:00Z","title":"How spin-orbital entanglement depends on the spin-orbit coupling in a Mott insulator","author":[{"last_name":"Gotfryd","first_name":"Dorota","full_name":"Gotfryd, Dorota"},{"orcid":"0000-0003-0853-8182","last_name":"Paerschke","first_name":"Ekaterina","id":"8275014E-6063-11E9-9B7F-6338E6697425","full_name":"Paerschke, Ekaterina"},{"last_name":"Chaloupka","first_name":"Jiri","full_name":"Chaloupka, Jiri"},{"first_name":"Andrzej M.","last_name":"Oles","full_name":"Oles, Andrzej M."},{"full_name":"Wohlfeld, Krzysztof","last_name":"Wohlfeld","first_name":"Krzysztof"}],"ec_funded":1,"quality_controlled":"1","article_processing_charge":"No","ddc":["530"],"publication":"Physical Review Research"},{"title":"Plasmodesmata-like intercellular connections by plant remorin in animal cells","oa_version":"Preprint","author":[{"last_name":"Wei","first_name":"Zhuang","full_name":"Wei, Zhuang"},{"last_name":"Tan","id":"2DE75584-F248-11E8-B48F-1D18A9856A87","first_name":"Shutang","full_name":"Tan, Shutang","orcid":"0000-0002-0471-8285"},{"full_name":"Liu, Tao","last_name":"Liu","first_name":"Tao"},{"full_name":"Wu, Yuan","first_name":"Yuan","last_name":"Wu"},{"last_name":"Lei","first_name":"Ji-Gang","full_name":"Lei, Ji-Gang"},{"last_name":"Chen","first_name":"ZhengJun","full_name":"Chen, ZhengJun"},{"full_name":"Friml, Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jiří","last_name":"Friml","orcid":"0000-0002-8302-7596"},{"full_name":"Xue, Hong-Wei","first_name":"Hong-Wei","last_name":"Xue"},{"last_name":"Liao","first_name":"Kan","full_name":"Liao, Kan"}],"type":"preprint","abstract":[{"lang":"eng","text":"Plasmodesmata (PD) are crucial structures for intercellular communication in multicellular plants with remorins being their crucial plant-specific structural and functional constituents. The PD biogenesis is an intriguing but poorly understood process. By expressing an Arabidopsis remorin protein in mammalian cells, we have reconstituted a PD-like filamentous structure, termed remorin filament (RF), connecting neighboring cells physically and physiologically. Notably, RFs are capable of transporting macromolecules intercellularly, in a way similar to plant PD. With further super-resolution microscopic analysis and biochemical characterization, we found that RFs are also composed of actin filaments, forming the core skeleton structure, aligned with the remorin protein. This unique heterologous filamentous structure might explain the molecular mechanism for remorin function as well as PD construction. Furthermore, remorin protein exhibits a specific distribution manner in the plasma membrane in mammalian cells, representing a lipid nanodomain, depending on its lipid modification status. Our studies not only provide crucial insights into the mechanism of PD biogenesis, but also uncovers unsuspected fundamental mechanistic and evolutionary links between intercellular communication systems of plants and animals."}],"date_created":"2020-03-21T16:34:42Z","date_published":"2020-02-19T00:00:00Z","publication":"bioRxiv","article_processing_charge":"No","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1101/791137"}],"oa":1,"year":"2020","month":"02","page":"22","_id":"7601","citation":{"chicago":"Wei, Zhuang, Shutang Tan, Tao Liu, Yuan Wu, Ji-Gang Lei, ZhengJun Chen, Jiří Friml, Hong-Wei Xue, and Kan Liao. “Plasmodesmata-like Intercellular Connections by Plant Remorin in Animal Cells.” <i>BioRxiv</i>. Cold Spring Harbor Laboratory, 2020. <a href=\"https://doi.org/10.1101/791137\">https://doi.org/10.1101/791137</a>.","mla":"Wei, Zhuang, et al. “Plasmodesmata-like Intercellular Connections by Plant Remorin in Animal Cells.” <i>BioRxiv</i>, Cold Spring Harbor Laboratory, 2020, doi:<a href=\"https://doi.org/10.1101/791137\">10.1101/791137</a>.","ama":"Wei Z, Tan S, Liu T, et al. Plasmodesmata-like intercellular connections by plant remorin in animal cells. <i>bioRxiv</i>. 2020. doi:<a href=\"https://doi.org/10.1101/791137\">10.1101/791137</a>","ieee":"Z. Wei <i>et al.</i>, “Plasmodesmata-like intercellular connections by plant remorin in animal cells,” <i>bioRxiv</i>. Cold Spring Harbor Laboratory, 2020.","short":"Z. Wei, S. Tan, T. Liu, Y. Wu, J.-G. Lei, Z. Chen, J. Friml, H.-W. Xue, K. Liao, BioRxiv (2020).","apa":"Wei, Z., Tan, S., Liu, T., Wu, Y., Lei, J.-G., Chen, Z., … Liao, K. (2020). Plasmodesmata-like intercellular connections by plant remorin in animal cells. <i>bioRxiv</i>. Cold Spring Harbor Laboratory. <a href=\"https://doi.org/10.1101/791137\">https://doi.org/10.1101/791137</a>","ista":"Wei Z, Tan S, Liu T, Wu Y, Lei J-G, Chen Z, Friml J, Xue H-W, Liao K. 2020. Plasmodesmata-like intercellular connections by plant remorin in animal cells. bioRxiv, <a href=\"https://doi.org/10.1101/791137\">10.1101/791137</a>."},"date_updated":"2021-01-12T08:14:26Z","status":"public","publisher":"Cold Spring Harbor Laboratory","publication_status":"published","language":[{"iso":"eng"}],"day":"19","doi":"10.1101/791137","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"JiFr"}]},{"intvolume":"       153","tmp":{"name":"Creative Commons Attribution 3.0 Unported (CC BY 3.0)","legal_code_url":"https://creativecommons.org/licenses/by/3.0/legalcode","short":"CC BY (3.0)","image":"/images/cc_by.png"},"external_id":{"arxiv":["1911.06347"]},"scopus_import":"1","abstract":[{"text":"Union-Find (or Disjoint-Set Union) is one of the fundamental problems in computer science; it has been well-studied from both theoretical and practical perspectives in the sequential case. Recently, there has been mounting interest in analyzing this problem in the concurrent scenario, and several asymptotically-efficient algorithms have been proposed. Yet, to date, there is very little known about the practical performance of concurrent Union-Find. This work addresses this gap. We evaluate and analyze the performance of several concurrent Union-Find algorithms and optimization strategies across a wide range of platforms (Intel, AMD, and ARM) and workloads (social, random, and road networks, as well as integrations into more complex algorithms). We first observe that, due to the limited computational cost, the number of induced cache misses is the critical determining factor for the performance of existing algorithms. We introduce new techniques to reduce this cost by storing node priorities implicitly and by using plain reads and writes in a way that does not affect the correctness of the algorithms. Finally, we show that Union-Find implementations are an interesting application for Transactional Memory (TM): one of the fastest algorithm variants we discovered is a sequential one that uses coarse-grained locking with the lock elision optimization to reduce synchronization cost and increase scalability. ","lang":"eng"}],"date_created":"2020-03-22T23:00:46Z","volume":153,"license":"https://creativecommons.org/licenses/by/3.0/","oa_version":"Published Version","day":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"DaAl"}],"doi":"10.4230/LIPIcs.OPODIS.2019.15","status":"public","publication_status":"published","oa":1,"file_date_updated":"2020-07-14T12:48:01Z","quality_controlled":"1","publication_identifier":{"isbn":["9783959771337"],"issn":["1868-8969"]},"article_processing_charge":"No","ddc":["000"],"publication":"23rd International Conference on Principles of Distributed Systems","has_accepted_license":"1","type":"conference","date_published":"2020-02-01T00:00:00Z","author":[{"orcid":"0000-0003-3650-940X","last_name":"Alistarh","first_name":"Dan-Adrian","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","full_name":"Alistarh, Dan-Adrian"},{"first_name":"Alexander","last_name":"Fedorov","full_name":"Fedorov, Alexander"},{"full_name":"Koval, Nikita","last_name":"Koval","id":"2F4DB10C-F248-11E8-B48F-1D18A9856A87","first_name":"Nikita"}],"alternative_title":["LIPIcs"],"title":"In search of the fastest concurrent union-find algorithm","arxiv":1,"file":[{"content_type":"application/pdf","relation":"main_file","date_updated":"2020-07-14T12:48:01Z","access_level":"open_access","file_name":"2019_LIPIcs_Alistarh.pdf","checksum":"d66f07ecb609d9f02433e39f80a447e9","file_size":13074131,"date_created":"2020-03-23T09:22:48Z","file_id":"7609","creator":"dernst"}],"date_updated":"2025-07-10T11:54:46Z","_id":"7605","citation":{"ieee":"D.-A. Alistarh, A. Fedorov, and N. Koval, “In search of the fastest concurrent union-find algorithm,” in <i>23rd International Conference on Principles of Distributed Systems</i>, Neuchatal, Switzerland, 2020, vol. 153, p. 15:1-15:16.","mla":"Alistarh, Dan-Adrian, et al. “In Search of the Fastest Concurrent Union-Find Algorithm.” <i>23rd International Conference on Principles of Distributed Systems</i>, vol. 153, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020, p. 15:1-15:16, doi:<a href=\"https://doi.org/10.4230/LIPIcs.OPODIS.2019.15\">10.4230/LIPIcs.OPODIS.2019.15</a>.","ama":"Alistarh D-A, Fedorov A, Koval N. In search of the fastest concurrent union-find algorithm. In: <i>23rd International Conference on Principles of Distributed Systems</i>. Vol 153. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2020:15:1-15:16. doi:<a href=\"https://doi.org/10.4230/LIPIcs.OPODIS.2019.15\">10.4230/LIPIcs.OPODIS.2019.15</a>","ista":"Alistarh D-A, Fedorov A, Koval N. 2020. In search of the fastest concurrent union-find algorithm. 23rd International Conference on Principles of Distributed Systems. OPODIS: International Conference on Principles of Distributed Systems, LIPIcs, vol. 153, 15:1-15:16.","apa":"Alistarh, D.-A., Fedorov, A., &#38; Koval, N. (2020). In search of the fastest concurrent union-find algorithm. In <i>23rd International Conference on Principles of Distributed Systems</i> (Vol. 153, p. 15:1-15:16). Neuchatal, Switzerland: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPIcs.OPODIS.2019.15\">https://doi.org/10.4230/LIPIcs.OPODIS.2019.15</a>","short":"D.-A. Alistarh, A. Fedorov, N. Koval, in:, 23rd International Conference on Principles of Distributed Systems, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020, p. 15:1-15:16.","chicago":"Alistarh, Dan-Adrian, Alexander Fedorov, and Nikita Koval. “In Search of the Fastest Concurrent Union-Find Algorithm.” In <i>23rd International Conference on Principles of Distributed Systems</i>, 153:15:1-15:16. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020. <a href=\"https://doi.org/10.4230/LIPIcs.OPODIS.2019.15\">https://doi.org/10.4230/LIPIcs.OPODIS.2019.15</a>."},"page":"15:1-15:16","month":"02","language":[{"iso":"eng"}],"publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","corr_author":"1","year":"2020","conference":{"end_date":"2019-12-19","location":"Neuchatal, Switzerland","start_date":"2019-12-17","name":"OPODIS: International Conference on Principles of Distributed Systems"}},{"volume":110,"date_created":"2020-03-23T11:11:47Z","article_type":"original","abstract":[{"text":"We consider a system of N bosons in the limit N→∞, interacting through singular potentials. For initial data exhibiting Bose–Einstein condensation, the many-body time evolution is well approximated through a quadratic fluctuation dynamics around a cubic nonlinear Schrödinger equation of the condensate wave function. We show that these fluctuations satisfy a (multi-variate) central limit theorem.","lang":"eng"}],"oa_version":"Published Version","intvolume":"       110","scopus_import":"1","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"external_id":{"isi":["000551556000006"]},"file_date_updated":"2020-11-20T12:04:26Z","oa":1,"doi":"10.1007/s11005-020-01286-w","department":[{"_id":"RoSe"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","project":[{"call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships"},{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"}],"day":"12","publication_status":"published","status":"public","date_published":"2020-03-12T00:00:00Z","type":"journal_article","has_accepted_license":"1","isi":1,"ec_funded":1,"title":"Central limit theorem for Bose gases interacting through singular potentials","author":[{"last_name":"Rademacher","first_name":"Simone Anna Elvira","id":"856966FE-A408-11E9-977E-802DE6697425","full_name":"Rademacher, Simone Anna Elvira","orcid":"0000-0001-5059-4466"}],"article_processing_charge":"Yes (via OA deal)","publication_identifier":{"eissn":["1573-0530"],"issn":["0377-9017"]},"quality_controlled":"1","publication":"Letters in Mathematical Physics","ddc":["510"],"year":"2020","acknowledgement":"Simone Rademacher acknowledges partial support from the NCCR SwissMAP. This project has received\r\nfunding from the European Union’s Horizon 2020 research and innovation program under the Marie\r\nSkłodowska-Curie Grant Agreement No. 754411.\r\nOpen access funding provided by Institute of Science and Technology (IST Austria).\r\nS.R. would like to thank Benjamin Schlein for many fruitful discussions.","file":[{"relation":"main_file","content_type":"application/pdf","success":1,"date_updated":"2020-11-20T12:04:26Z","access_level":"open_access","file_size":478683,"checksum":"3bdd41f10ad947b67a45b98f507a7d4a","date_created":"2020-11-20T12:04:26Z","file_name":"2020_LettersMathPhysics_Rademacher.pdf","creator":"dernst","file_id":"8784"}],"corr_author":"1","publisher":"Springer Nature","language":[{"iso":"eng"}],"month":"03","_id":"7611","date_updated":"2025-04-14T07:44:03Z","page":"2143-2174","citation":{"chicago":"Rademacher, Simone Anna Elvira. “Central Limit Theorem for Bose Gases Interacting through Singular Potentials.” <i>Letters in Mathematical Physics</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1007/s11005-020-01286-w\">https://doi.org/10.1007/s11005-020-01286-w</a>.","ieee":"S. A. E. Rademacher, “Central limit theorem for Bose gases interacting through singular potentials,” <i>Letters in Mathematical Physics</i>, vol. 110. Springer Nature, pp. 2143–2174, 2020.","ama":"Rademacher SAE. Central limit theorem for Bose gases interacting through singular potentials. <i>Letters in Mathematical Physics</i>. 2020;110:2143-2174. doi:<a href=\"https://doi.org/10.1007/s11005-020-01286-w\">10.1007/s11005-020-01286-w</a>","mla":"Rademacher, Simone Anna Elvira. “Central Limit Theorem for Bose Gases Interacting through Singular Potentials.” <i>Letters in Mathematical Physics</i>, vol. 110, Springer Nature, 2020, pp. 2143–74, doi:<a href=\"https://doi.org/10.1007/s11005-020-01286-w\">10.1007/s11005-020-01286-w</a>.","ista":"Rademacher SAE. 2020. Central limit theorem for Bose gases interacting through singular potentials. Letters in Mathematical Physics. 110, 2143–2174.","short":"S.A.E. Rademacher, Letters in Mathematical Physics 110 (2020) 2143–2174.","apa":"Rademacher, S. A. E. (2020). Central limit theorem for Bose gases interacting through singular potentials. <i>Letters in Mathematical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s11005-020-01286-w\">https://doi.org/10.1007/s11005-020-01286-w</a>"}},{"language":[{"iso":"eng"}],"publisher":"Springer Nature","corr_author":"1","_id":"7618","page":"2039-2052","date_updated":"2025-10-09T08:23:15Z","citation":{"chicago":"Pitrik, Jozsef, and Daniel Virosztek. “Quantum Hellinger Distances Revisited.” <i>Letters in Mathematical Physics</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1007/s11005-020-01282-0\">https://doi.org/10.1007/s11005-020-01282-0</a>.","ista":"Pitrik J, Virosztek D. 2020. Quantum Hellinger distances revisited. Letters in Mathematical Physics. 110(8), 2039–2052.","short":"J. Pitrik, D. Virosztek, Letters in Mathematical Physics 110 (2020) 2039–2052.","apa":"Pitrik, J., &#38; Virosztek, D. (2020). Quantum Hellinger distances revisited. <i>Letters in Mathematical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s11005-020-01282-0\">https://doi.org/10.1007/s11005-020-01282-0</a>","ieee":"J. Pitrik and D. Virosztek, “Quantum Hellinger distances revisited,” <i>Letters in Mathematical Physics</i>, vol. 110, no. 8. Springer Nature, pp. 2039–2052, 2020.","ama":"Pitrik J, Virosztek D. Quantum Hellinger distances revisited. <i>Letters in Mathematical Physics</i>. 2020;110(8):2039-2052. doi:<a href=\"https://doi.org/10.1007/s11005-020-01282-0\">10.1007/s11005-020-01282-0</a>","mla":"Pitrik, Jozsef, and Daniel Virosztek. “Quantum Hellinger Distances Revisited.” <i>Letters in Mathematical Physics</i>, vol. 110, no. 8, Springer Nature, 2020, pp. 2039–52, doi:<a href=\"https://doi.org/10.1007/s11005-020-01282-0\">10.1007/s11005-020-01282-0</a>."},"month":"08","year":"2020","acknowledgement":"J. Pitrik was supported by the Hungarian Academy of Sciences Lendület-Momentum Grant for Quantum\r\nInformation Theory, No. 96 141, and by the Hungarian National Research, Development and Innovation\r\nOffice (NKFIH) via Grants Nos. K119442, K124152 and KH129601. D. Virosztek was supported by the\r\nISTFELLOW program of the Institute of Science and Technology Austria (Project Code IC1027FELL01),\r\nby the European Union’s Horizon 2020 research and innovation program under the Marie\r\nSklodowska-Curie Grant Agreement No. 846294, and partially supported by the Hungarian National\r\nResearch, Development and Innovation Office (NKFIH) via Grants Nos. K124152 and KH129601.\r\nWe are grateful to Milán Mosonyi for drawing our attention to Ref.’s [6,14,15,17,\r\n20,21], for comments on earlier versions of this paper, and for several discussions on the topic. We are\r\nalso grateful to Miklós Pálfia for several discussions; to László Erdös for his essential suggestions on the\r\nstructure and highlights of this paper, and for his comments on earlier versions; and to the anonymous\r\nreferee for his/her valuable comments and suggestions.","article_processing_charge":"No","quality_controlled":"1","publication_identifier":{"eissn":["1573-0530"],"issn":["0377-9017"]},"publication":"Letters in Mathematical Physics","date_published":"2020-08-01T00:00:00Z","type":"journal_article","arxiv":1,"ec_funded":1,"isi":1,"author":[{"last_name":"Pitrik","first_name":"Jozsef","full_name":"Pitrik, Jozsef"},{"full_name":"Virosztek, Daniel","last_name":"Virosztek","id":"48DB45DA-F248-11E8-B48F-1D18A9856A87","first_name":"Daniel","orcid":"0000-0003-1109-5511"}],"title":"Quantum Hellinger distances revisited","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"LaEr"}],"doi":"10.1007/s11005-020-01282-0","day":"01","project":[{"call_identifier":"H2020","_id":"26A455A6-B435-11E9-9278-68D0E5697425","grant_number":"846294","name":"Geometric study of Wasserstein spaces and free probability"},{"name":"International IST Postdoc Fellowship Programme","call_identifier":"FP7","_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734"}],"publication_status":"published","status":"public","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1903.10455"}],"oa":1,"issue":"8","intvolume":"       110","scopus_import":"1","external_id":{"isi":["000551556000002"],"arxiv":["1903.10455"]},"article_type":"original","volume":110,"date_created":"2020-03-25T15:57:48Z","abstract":[{"text":"This short note aims to study quantum Hellinger distances investigated recently by Bhatia et al. (Lett Math Phys 109:1777–1804, 2019) with a particular emphasis on barycenters. We introduce the family of generalized quantum Hellinger divergences that are of the form ϕ(A,B)=Tr((1−c)A+cB−AσB), where σ is an arbitrary Kubo–Ando mean, and c∈(0,1) is the weight of σ. We note that these divergences belong to the family of maximal quantum f-divergences, and hence are jointly convex, and satisfy the data processing inequality. We derive a characterization of the barycenter of finitely many positive definite operators for these generalized quantum Hellinger divergences. We note that the characterization of the barycenter as the weighted multivariate 1/2-power mean, that was claimed in Bhatia et al. (2019), is true in the case of commuting operators, but it is not correct in the general case. ","lang":"eng"}],"oa_version":"Preprint"},{"acknowledgement":"This work is partly supported by Grants-in-Aid for Scientific Research by Young Scientist A (KAKENHI Wakate-A) No. JP17H04802, Grants-in-Aid for Scientific Research No. JP19H05602 from the Japan Society for the Promotion of Science, and RIKEN Incentive Research Grant (Shoreikadai) 2016. M.V.K. and M.I. acknowledge financial support from the European Union (EU) via FP7 ERC Starting Grant 2012 (Project NANOSOLID, GA No. 306733) and ETH Zurich via ETH career seed grant (SEED-18 16-2). Support from Cambridge Display Technology, Ltd., and Sumitomo Chemical Company is also acknowledged. We thank Mrs. T. Kikitsu and Dr. D. Hashizume (RIKEN-CEMS) for access to the transmission electron microscope facility.","year":"2020","month":"03","citation":{"chicago":"Miranti, Retno, Daiki Shin, Ricky Dwi Septianto, Maria Ibáñez, Maksym V. Kovalenko, Nobuhiro Matsushita, Yoshihiro Iwasa, and Satria Zulkarnaen Bisri. “Exclusive Electron Transport in Core@Shell PbTe@PbS Colloidal Semiconductor Nanocrystal Assemblies.” <i>ACS Nano</i>. American Chemical Society, 2020. <a href=\"https://doi.org/10.1021/acsnano.9b08687\">https://doi.org/10.1021/acsnano.9b08687</a>.","short":"R. Miranti, D. Shin, R.D. Septianto, M. Ibáñez, M.V. Kovalenko, N. Matsushita, Y. Iwasa, S.Z. Bisri, ACS Nano 14 (2020) 3242–3250.","apa":"Miranti, R., Shin, D., Septianto, R. D., Ibáñez, M., Kovalenko, M. V., Matsushita, N., … Bisri, S. Z. (2020). Exclusive electron transport in Core@Shell PbTe@PbS colloidal semiconductor nanocrystal assemblies. <i>ACS Nano</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acsnano.9b08687\">https://doi.org/10.1021/acsnano.9b08687</a>","ista":"Miranti R, Shin D, Septianto RD, Ibáñez M, Kovalenko MV, Matsushita N, Iwasa Y, Bisri SZ. 2020. Exclusive electron transport in Core@Shell PbTe@PbS colloidal semiconductor nanocrystal assemblies. ACS Nano. 14(3), 3242–3250.","ama":"Miranti R, Shin D, Septianto RD, et al. Exclusive electron transport in Core@Shell PbTe@PbS colloidal semiconductor nanocrystal assemblies. <i>ACS Nano</i>. 2020;14(3):3242-3250. doi:<a href=\"https://doi.org/10.1021/acsnano.9b08687\">10.1021/acsnano.9b08687</a>","mla":"Miranti, Retno, et al. “Exclusive Electron Transport in Core@Shell PbTe@PbS Colloidal Semiconductor Nanocrystal Assemblies.” <i>ACS Nano</i>, vol. 14, no. 3, American Chemical Society, 2020, pp. 3242–50, doi:<a href=\"https://doi.org/10.1021/acsnano.9b08687\">10.1021/acsnano.9b08687</a>.","ieee":"R. Miranti <i>et al.</i>, “Exclusive electron transport in Core@Shell PbTe@PbS colloidal semiconductor nanocrystal assemblies,” <i>ACS Nano</i>, vol. 14, no. 3. American Chemical Society, pp. 3242–3250, 2020."},"_id":"7634","date_updated":"2023-08-18T10:25:40Z","page":"3242-3250","publisher":"American Chemical Society","language":[{"iso":"eng"}],"title":"Exclusive electron transport in Core@Shell PbTe@PbS colloidal semiconductor nanocrystal assemblies","author":[{"first_name":"Retno","last_name":"Miranti","full_name":"Miranti, Retno"},{"full_name":"Shin, Daiki","first_name":"Daiki","last_name":"Shin"},{"full_name":"Septianto, Ricky Dwi","last_name":"Septianto","first_name":"Ricky Dwi"},{"orcid":"0000-0001-5013-2843","full_name":"Ibáñez, Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87","first_name":"Maria","last_name":"Ibáñez"},{"last_name":"Kovalenko","first_name":"Maksym V.","full_name":"Kovalenko, Maksym V."},{"full_name":"Matsushita, Nobuhiro","last_name":"Matsushita","first_name":"Nobuhiro"},{"full_name":"Iwasa, Yoshihiro","last_name":"Iwasa","first_name":"Yoshihiro"},{"full_name":"Bisri, Satria Zulkarnaen","first_name":"Satria Zulkarnaen","last_name":"Bisri"}],"isi":1,"type":"journal_article","date_published":"2020-03-24T00:00:00Z","publication":"ACS Nano","publication_identifier":{"eissn":["1936-086X"]},"quality_controlled":"1","article_processing_charge":"No","issue":"3","status":"public","publication_status":"published","day":"24","doi":"10.1021/acsnano.9b08687","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","department":[{"_id":"MaIb"}],"pmid":1,"oa_version":"None","abstract":[{"text":"Assemblies of colloidal semiconductor nanocrystals (NCs) in the form of thin solid films leverage the size-dependent quantum confinement properties and the wet chemical methods vital for the development of the emerging solution-processable electronics, photonics, and optoelectronics technologies. The ability to control the charge carrier transport in the colloidal NC assemblies is fundamental for altering their electronic and optical properties for the desired applications. Here we demonstrate a strategy to render the solids of narrow-bandgap NC assemblies exclusively electron-transporting by creating a type-II heterojunction via shelling. Electronic transport of molecularly cross-linked PbTe@PbS core@shell NC assemblies is measured using both a conventional solid gate transistor and an electric-double-layer transistor, as well as compared with those of core-only PbTe NCs. In contrast to the ambipolar characteristics demonstrated by many narrow-bandgap NCs, the core@shell NCs exhibit exclusive n-type transport, i.e., drastically suppressed contribution of holes to the overall transport. The PbS shell that forms a type-II heterojunction assists the selective carrier transport by heavy doping of electrons into the PbTe-core conduction level and simultaneously strongly localizes the holes within the NC core valence level. This strongly enhanced n-type transport makes these core@shell NCs suitable for applications where ambipolar characteristics should be actively suppressed, in particular, for thermoelectric and electron-transporting layers in photovoltaic devices.","lang":"eng"}],"date_created":"2020-04-05T22:00:48Z","volume":14,"article_type":"original","external_id":{"isi":["000526301400057"],"pmid":["32073817"]},"scopus_import":"1","intvolume":"        14"},{"pmid":1,"oa_version":"Published Version","abstract":[{"text":"In plant cells, environmental stressors promote changes in connectivity between the cortical ER and the PM. Although this process is tightly regulated in space and time, the molecular signals and structural components mediating these changes in inter-organelle communication are only starting to be characterized. In this report, we confirm the presence of a putative tethering complex containing the synaptotagmins 1 and 5 (SYT1 and SYT5) and the Ca2+ and lipid binding protein 1 (CLB1/SYT7). This complex is enriched at ER-PM contact sites (EPCS), have slow responses to changes in extracellular Ca2+, and display severe cytoskeleton-dependent rearrangements in response to the trivalent lanthanum (La3+) and gadolinium (Gd3+) rare earth elements (REEs). Although REEs are generally used as non-selective cation channel blockers at the PM, here we show that the slow internalization of REEs into the cytosol underlies the activation of the Ca2+/Calmodulin intracellular signaling, the accumulation of phosphatidylinositol-4-phosphate (PI4P) at the PM, and the cytoskeleton-dependent rearrangement of the SYT1/SYT5 EPCS complexes. We propose that the observed EPCS rearrangements act as a slow adaptive response to sustained stress conditions, and that this process involves the accumulation of stress-specific phosphoinositides species at the PM.","lang":"eng"}],"volume":71,"date_created":"2020-04-06T10:57:08Z","article_type":"original","external_id":{"isi":["000553125400007"],"pmid":["32179893"]},"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"scopus_import":"1","intvolume":"        71","issue":"14","oa":1,"file_date_updated":"2020-10-06T07:41:35Z","status":"public","publication_status":"published","day":"06","doi":"10.1093/jxb/eraa138","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","department":[{"_id":"JiFr"}],"title":"Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis","author":[{"full_name":"Lee, E","first_name":"E","last_name":"Lee"},{"first_name":"B","last_name":"Vila Nova Santana","full_name":"Vila Nova Santana, B"},{"full_name":"Samuels, E","last_name":"Samuels","first_name":"E"},{"full_name":"Benitez-Fuente, F","last_name":"Benitez-Fuente","first_name":"F"},{"last_name":"Corsi","first_name":"E","full_name":"Corsi, E"},{"last_name":"Botella","first_name":"MA","full_name":"Botella, MA"},{"last_name":"Perez-Sancho","first_name":"J","full_name":"Perez-Sancho, J"},{"full_name":"Vanneste, S","last_name":"Vanneste","first_name":"S"},{"full_name":"Friml, Jiří","last_name":"Friml","first_name":"Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596"},{"full_name":"Macho, A","last_name":"Macho","first_name":"A"},{"last_name":"Alves Azevedo","first_name":"A","full_name":"Alves Azevedo, A"},{"last_name":"Rosado","first_name":"A","full_name":"Rosado, A"}],"isi":1,"type":"journal_article","has_accepted_license":"1","date_published":"2020-07-06T00:00:00Z","ddc":["580"],"publication":"Journal of Experimental Botany","publication_identifier":{"issn":["0022-0957"],"eissn":["1460-2431"]},"quality_controlled":"1","article_processing_charge":"No","year":"2020","month":"07","_id":"7646","page":"3986–3998","citation":{"chicago":"Lee, E, B Vila Nova Santana, E Samuels, F Benitez-Fuente, E Corsi, MA Botella, J Perez-Sancho, et al. “Rare Earth Elements Induce Cytoskeleton-Dependent and PI4P-Associated Rearrangement of SYT1/SYT5 ER-PM Contact Site Complexes in Arabidopsis.” <i>Journal of Experimental Botany</i>. Oxford University Press, 2020. <a href=\"https://doi.org/10.1093/jxb/eraa138\">https://doi.org/10.1093/jxb/eraa138</a>.","short":"E. Lee, B. Vila Nova Santana, E. Samuels, F. Benitez-Fuente, E. Corsi, M. Botella, J. Perez-Sancho, S. Vanneste, J. Friml, A. Macho, A. Alves Azevedo, A. Rosado, Journal of Experimental Botany 71 (2020) 3986–3998.","apa":"Lee, E., Vila Nova Santana, B., Samuels, E., Benitez-Fuente, F., Corsi, E., Botella, M., … Rosado, A. (2020). Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis. <i>Journal of Experimental Botany</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/jxb/eraa138\">https://doi.org/10.1093/jxb/eraa138</a>","ista":"Lee E, Vila Nova Santana B, Samuels E, Benitez-Fuente F, Corsi E, Botella M, Perez-Sancho J, Vanneste S, Friml J, Macho A, Alves Azevedo A, Rosado A. 2020. Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis. Journal of Experimental Botany. 71(14), 3986–3998.","mla":"Lee, E., et al. “Rare Earth Elements Induce Cytoskeleton-Dependent and PI4P-Associated Rearrangement of SYT1/SYT5 ER-PM Contact Site Complexes in Arabidopsis.” <i>Journal of Experimental Botany</i>, vol. 71, no. 14, Oxford University Press, 2020, pp. 3986–3998, doi:<a href=\"https://doi.org/10.1093/jxb/eraa138\">10.1093/jxb/eraa138</a>.","ama":"Lee E, Vila Nova Santana B, Samuels E, et al. Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis. <i>Journal of Experimental Botany</i>. 2020;71(14):3986–3998. doi:<a href=\"https://doi.org/10.1093/jxb/eraa138\">10.1093/jxb/eraa138</a>","ieee":"E. Lee <i>et al.</i>, “Rare earth elements induce cytoskeleton-dependent and PI4P-associated rearrangement of SYT1/SYT5 ER-PM contact site complexes in Arabidopsis,” <i>Journal of Experimental Botany</i>, vol. 71, no. 14. Oxford University Press, pp. 3986–3998, 2020."},"date_updated":"2024-10-21T06:02:26Z","publisher":"Oxford University Press","language":[{"iso":"eng"}],"file":[{"success":1,"date_updated":"2020-10-06T07:41:35Z","access_level":"open_access","relation":"main_file","content_type":"application/pdf","creator":"dernst","file_id":"8613","date_created":"2020-10-06T07:41:35Z","file_size":1916031,"checksum":"b06aaaa93dc41896da805fe4b75cf3a1","file_name":"2020_JourExperimBotany_Lee.pdf"}]},{"file_date_updated":"2020-11-20T13:17:42Z","oa":1,"issue":"6","project":[{"grant_number":"694227","_id":"25C6DC12-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"Analysis of quantum many-body systems"},{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}],"day":"09","doi":"10.1007/s00205-020-01489-4","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","department":[{"_id":"RoSe"}],"status":"public","publication_status":"published","abstract":[{"text":"We consider a dilute, homogeneous Bose gas at positive temperature. The system is investigated in the Gross–Pitaevskii limit, where the scattering length a is so small that the interaction energy is of the same order of magnitude as the spectral gap of the Laplacian, and for temperatures that are comparable to the critical temperature of the ideal gas. We show that the difference between the specific free energy of the interacting system and the one of the ideal gas is to leading order given by 4πa(2ϱ2−ϱ20). Here ϱ denotes the density of the system and ϱ0 is the expected condensate density of the ideal gas. Additionally, we show that the one-particle density matrix of any approximate minimizer of the Gibbs free energy functional is to leading order given by the one of the ideal gas. This in particular proves Bose–Einstein condensation with critical temperature given by the one of the ideal gas to leading order. One key ingredient of our proof is a novel use of the Gibbs variational principle that goes hand in hand with the c-number substitution.","lang":"eng"}],"volume":236,"date_created":"2020-04-08T15:18:03Z","article_type":"original","oa_version":"Published Version","intvolume":"       236","external_id":{"arxiv":["1901.11363"],"isi":["000519415000001"]},"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"scopus_import":"1","year":"2020","acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria). It is a pleasure to thank Jakob Yngvason for helpful discussions. Financial support by the European Research Council (ERC) under the European Union’sHorizon 2020 research and innovation programme (Grant Agreement No. 694227) is gratefully acknowledged. A. D. acknowledges funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie Grant Agreement No. 836146.","file":[{"date_created":"2020-11-20T13:17:42Z","checksum":"b645fb64bfe95bbc05b3eea374109a9c","file_size":704633,"file_name":"2020_ArchRatMechanicsAnalysis_Deuchert.pdf","creator":"dernst","file_id":"8785","relation":"main_file","content_type":"application/pdf","success":1,"access_level":"open_access","date_updated":"2020-11-20T13:17:42Z"}],"month":"03","_id":"7650","citation":{"chicago":"Deuchert, Andreas, and Robert Seiringer. “Gross-Pitaevskii Limit of a Homogeneous Bose Gas at Positive Temperature.” <i>Archive for Rational Mechanics and Analysis</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1007/s00205-020-01489-4\">https://doi.org/10.1007/s00205-020-01489-4</a>.","ista":"Deuchert A, Seiringer R. 2020. Gross-Pitaevskii limit of a homogeneous Bose gas at positive temperature. Archive for Rational Mechanics and Analysis. 236(6), 1217–1271.","apa":"Deuchert, A., &#38; Seiringer, R. (2020). Gross-Pitaevskii limit of a homogeneous Bose gas at positive temperature. <i>Archive for Rational Mechanics and Analysis</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00205-020-01489-4\">https://doi.org/10.1007/s00205-020-01489-4</a>","short":"A. Deuchert, R. Seiringer, Archive for Rational Mechanics and Analysis 236 (2020) 1217–1271.","ieee":"A. Deuchert and R. Seiringer, “Gross-Pitaevskii limit of a homogeneous Bose gas at positive temperature,” <i>Archive for Rational Mechanics and Analysis</i>, vol. 236, no. 6. Springer Nature, pp. 1217–1271, 2020.","mla":"Deuchert, Andreas, and Robert Seiringer. “Gross-Pitaevskii Limit of a Homogeneous Bose Gas at Positive Temperature.” <i>Archive for Rational Mechanics and Analysis</i>, vol. 236, no. 6, Springer Nature, 2020, pp. 1217–71, doi:<a href=\"https://doi.org/10.1007/s00205-020-01489-4\">10.1007/s00205-020-01489-4</a>.","ama":"Deuchert A, Seiringer R. Gross-Pitaevskii limit of a homogeneous Bose gas at positive temperature. <i>Archive for Rational Mechanics and Analysis</i>. 2020;236(6):1217-1271. doi:<a href=\"https://doi.org/10.1007/s00205-020-01489-4\">10.1007/s00205-020-01489-4</a>"},"page":"1217-1271","date_updated":"2025-04-14T07:27:00Z","publisher":"Springer Nature","corr_author":"1","language":[{"iso":"eng"}],"type":"journal_article","has_accepted_license":"1","date_published":"2020-03-09T00:00:00Z","title":"Gross-Pitaevskii limit of a homogeneous Bose gas at positive temperature","author":[{"orcid":"0000-0003-3146-6746","id":"4DA65CD0-F248-11E8-B48F-1D18A9856A87","first_name":"Andreas","last_name":"Deuchert","full_name":"Deuchert, Andreas"},{"orcid":"0000-0002-6781-0521","full_name":"Seiringer, Robert","last_name":"Seiringer","first_name":"Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"}],"isi":1,"ec_funded":1,"arxiv":1,"publication_identifier":{"issn":["0003-9527"],"eissn":["1432-0673"]},"quality_controlled":"1","article_processing_charge":"Yes (via OA deal)","ddc":["510"],"publication":"Archive for Rational Mechanics and Analysis"},{"doi":"10.1098/rsif.2019.0721","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"NiBa"}],"day":"01","publication_status":"published","status":"public","oa":1,"file_date_updated":"2020-07-14T12:48:01Z","issue":"163","intvolume":"        17","scopus_import":1,"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"date_created":"2020-04-08T15:19:17Z","volume":17,"article_type":"original","article_number":"20190721","abstract":[{"lang":"eng","text":"The growth of snail shells can be described by simple mathematical rules. Variation in a few parameters can explain much of the diversity of shell shapes seen in nature. However, empirical studies of gastropod shell shape variation typically use geometric morphometric approaches, which do not capture this growth pattern. We have developed a way to infer a set of developmentally descriptive shape parameters based on three-dimensional logarithmic helicospiral growth and using landmarks from two-dimensional shell images as input. We demonstrate the utility of this approach, and compare it to the geometric morphometric approach, using a large set of Littorina saxatilis shells in which locally adapted populations differ in shape. Our method can be modified easily to make it applicable to a wide range of shell forms, which would allow for investigations of the similarities and differences between and within many different species of gastropods."}],"oa_version":"Published Version","file":[{"date_created":"2020-04-14T12:31:16Z","checksum":"4eb102304402f5c56432516b84df86d6","file_size":1556190,"file_name":"2020_JournRoyalSociety_Larsson.pdf","creator":"dernst","file_id":"7660","relation":"main_file","content_type":"application/pdf","access_level":"open_access","date_updated":"2020-07-14T12:48:01Z"}],"publisher":"The Royal Society","language":[{"iso":"eng"}],"month":"02","_id":"7651","citation":{"short":"J. Larsson, A.M. Westram, S. Bengmark, T. Lundh, R.K. Butlin, Journal of The Royal Society Interface 17 (2020).","apa":"Larsson, J., Westram, A. M., Bengmark, S., Lundh, T., &#38; Butlin, R. K. (2020). A developmentally descriptive method for quantifying shape in gastropod shells. <i>Journal of The Royal Society Interface</i>. The Royal Society. <a href=\"https://doi.org/10.1098/rsif.2019.0721\">https://doi.org/10.1098/rsif.2019.0721</a>","ista":"Larsson J, Westram AM, Bengmark S, Lundh T, Butlin RK. 2020. A developmentally descriptive method for quantifying shape in gastropod shells. Journal of The Royal Society Interface. 17(163), 20190721.","ama":"Larsson J, Westram AM, Bengmark S, Lundh T, Butlin RK. A developmentally descriptive method for quantifying shape in gastropod shells. <i>Journal of The Royal Society Interface</i>. 2020;17(163). doi:<a href=\"https://doi.org/10.1098/rsif.2019.0721\">10.1098/rsif.2019.0721</a>","mla":"Larsson, J., et al. “A Developmentally Descriptive Method for Quantifying Shape in Gastropod Shells.” <i>Journal of The Royal Society Interface</i>, vol. 17, no. 163, 20190721, The Royal Society, 2020, doi:<a href=\"https://doi.org/10.1098/rsif.2019.0721\">10.1098/rsif.2019.0721</a>.","ieee":"J. Larsson, A. M. Westram, S. Bengmark, T. Lundh, and R. K. Butlin, “A developmentally descriptive method for quantifying shape in gastropod shells,” <i>Journal of The Royal Society Interface</i>, vol. 17, no. 163. The Royal Society, 2020.","chicago":"Larsson, J., Anja M Westram, S. Bengmark, T. Lundh, and R. K. Butlin. “A Developmentally Descriptive Method for Quantifying Shape in Gastropod Shells.” <i>Journal of The Royal Society Interface</i>. The Royal Society, 2020. <a href=\"https://doi.org/10.1098/rsif.2019.0721\">https://doi.org/10.1098/rsif.2019.0721</a>."},"date_updated":"2021-01-12T08:14:41Z","year":"2020","article_processing_charge":"No","publication_identifier":{"eissn":["1742-5662"],"issn":["1742-5689"]},"quality_controlled":"1","publication":"Journal of The Royal Society Interface","ddc":["570"],"date_published":"2020-02-01T00:00:00Z","type":"journal_article","has_accepted_license":"1","title":"A developmentally descriptive method for quantifying shape in gastropod shells","author":[{"first_name":"J.","last_name":"Larsson","full_name":"Larsson, J."},{"orcid":"0000-0003-1050-4969","first_name":"Anja M","id":"3C147470-F248-11E8-B48F-1D18A9856A87","last_name":"Westram","full_name":"Westram, Anja M"},{"full_name":"Bengmark, S.","first_name":"S.","last_name":"Bengmark"},{"first_name":"T.","last_name":"Lundh","full_name":"Lundh, T."},{"first_name":"R. K.","last_name":"Butlin","full_name":"Butlin, R. K."}]},{"article_processing_charge":"No","type":"research_data_reference","related_material":{"record":[{"id":"8040","relation":"used_in_publication","status":"public"}]},"date_published":"2020-05-20T00:00:00Z","date_created":"2021-08-11T09:18:54Z","author":[{"first_name":"Chitrak","last_name":"Gupta","full_name":"Gupta, Chitrak"},{"full_name":"Khaniya, Umesh","last_name":"Khaniya","first_name":"Umesh"},{"last_name":"Chan","first_name":"Chun Kit","full_name":"Chan, Chun Kit"},{"full_name":"Dehez, Francois","last_name":"Dehez","first_name":"Francois"},{"full_name":"Shekhar, Mrinal","last_name":"Shekhar","first_name":"Mrinal"},{"full_name":"Gunner, M.R.","first_name":"M.R.","last_name":"Gunner"},{"full_name":"Sazanov, Leonid A","last_name":"Sazanov","first_name":"Leonid A","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0977-7989"},{"last_name":"Chipot","first_name":"Christophe","full_name":"Chipot, Christophe"},{"first_name":"Abhishek","last_name":"Singharoy","full_name":"Singharoy, Abhishek"}],"oa_version":"Published Version","title":"Movies","day":"20","department":[{"_id":"LeSa"}],"user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","doi":"10.1021/jacs.9b13450.s002","status":"public","_id":"9878","date_updated":"2025-07-10T11:55:01Z","citation":{"ieee":"C. Gupta <i>et al.</i>, “Movies.” American Chemical Society, 2020.","ama":"Gupta C, Khaniya U, Chan CK, et al. Movies. 2020. doi:<a href=\"https://doi.org/10.1021/jacs.9b13450.s002\">10.1021/jacs.9b13450.s002</a>","mla":"Gupta, Chitrak, et al. <i>Movies</i>. American Chemical Society, 2020, doi:<a href=\"https://doi.org/10.1021/jacs.9b13450.s002\">10.1021/jacs.9b13450.s002</a>.","ista":"Gupta C, Khaniya U, Chan CK, Dehez F, Shekhar M, Gunner MR, Sazanov LA, Chipot C, Singharoy A. 2020. Movies, American Chemical Society, <a href=\"https://doi.org/10.1021/jacs.9b13450.s002\">10.1021/jacs.9b13450.s002</a>.","apa":"Gupta, C., Khaniya, U., Chan, C. K., Dehez, F., Shekhar, M., Gunner, M. R., … Singharoy, A. (2020). Movies. American Chemical Society. <a href=\"https://doi.org/10.1021/jacs.9b13450.s002\">https://doi.org/10.1021/jacs.9b13450.s002</a>","short":"C. Gupta, U. Khaniya, C.K. Chan, F. Dehez, M. Shekhar, M.R. Gunner, L.A. Sazanov, C. Chipot, A. Singharoy, (2020).","chicago":"Gupta, Chitrak, Umesh Khaniya, Chun Kit Chan, Francois Dehez, Mrinal Shekhar, M.R. Gunner, Leonid A Sazanov, Christophe Chipot, and Abhishek Singharoy. “Movies.” American Chemical Society, 2020. <a href=\"https://doi.org/10.1021/jacs.9b13450.s002\">https://doi.org/10.1021/jacs.9b13450.s002</a>."},"month":"05","publisher":"American Chemical Society","year":"2020"},{"external_id":{"pmid":["32042057"],"isi":["000560694800012"]},"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"scopus_import":"1","intvolume":"        10","pmid":1,"oa_version":"Published Version","related_material":{"link":[{"relation":"erratum","url":"https://doi.org/10.1038/s41598-020-80651-0"}]},"article_number":"2259","abstract":[{"lang":"eng","text":"Glutaminase (GA) catalyzes the first step in mitochondrial glutaminolysis playing a key role in cancer metabolic reprogramming. Humans express two types of GA isoforms: GLS and GLS2. GLS isozymes have been consistently related to cell proliferation, but the role of GLS2 in cancer remains poorly understood. GLS2 is repressed in many tumor cells and a better understanding of its function in tumorigenesis may further the development of new therapeutic approaches. We analyzed GLS2 expression in HCC, GBM and neuroblastoma cells, as well as in monkey COS-7 cells. We studied GLS2 expression after induction of differentiation with phorbol ester (PMA) and transduction with the full-length cDNA of GLS2. In parallel, we investigated cell cycle progression and levels of p53, p21 and c-Myc proteins. Using the baculovirus system, human GLS2 protein was overexpressed, purified and analyzed for posttranslational modifications employing a proteomics LC-MS/MS platform. We have demonstrated a dual targeting of GLS2 in human cancer cells. Immunocytochemistry and subcellular fractionation gave consistent results demonstrating nuclear and mitochondrial locations, with the latter being predominant. Nuclear targeting was confirmed in cancer cells overexpressing c-Myc- and GFP-tagged GLS2 proteins. We assessed the subnuclear location finding a widespread distribution of GLS2 in the nucleoplasm without clear overlapping with specific nuclear substructures. GLS2 expression and nuclear accrual notably increased by treatment of SH-SY5Y cells with PMA and it correlated with cell cycle arrest at G2/M, upregulation of tumor suppressor p53 and p21 protein. A similar response was obtained by overexpression of GLS2 in T98G glioma cells, including downregulation of oncogene c-Myc. Furthermore, human GLS2 was identified as being hypusinated by MS analysis, a posttranslational modification which may be relevant for its nuclear targeting and/or function. Our studies provide evidence for a tumor suppressor role of GLS2 in certain types of cancer. The data imply that GLS2 can be regarded as a highly mobile and multilocalizing protein translocated to both mitochondria and nuclei. Upregulation of GLS2 in cancer cells induced an antiproliferative response with cell cycle arrest at the G2/M phase."}],"date_created":"2020-02-16T23:00:49Z","volume":10,"article_type":"original","status":"public","publication_status":"published","day":"10","doi":"10.1038/s41598-020-58264-4","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","department":[{"_id":"CaBe"}],"issue":"1","oa":1,"file_date_updated":"2020-07-14T12:47:59Z","ddc":["570"],"publication":"Scientific reports","publication_identifier":{"eissn":["2045-2322"]},"quality_controlled":"1","article_processing_charge":"No","title":"Nuclear translocation of glutaminase GLS2 in human cancer cells associates with proliferation arrest and differentiation","author":[{"full_name":"López De La Oliva, Amada R.","first_name":"Amada R.","last_name":"López De La Oliva"},{"full_name":"Campos-Sandoval, José A.","first_name":"José A.","last_name":"Campos-Sandoval"},{"first_name":"María C.","last_name":"Gómez-García","full_name":"Gómez-García, María C."},{"last_name":"Cardona","first_name":"Carolina","full_name":"Cardona, Carolina"},{"last_name":"Martín-Rufián","first_name":"Mercedes","full_name":"Martín-Rufián, Mercedes"},{"last_name":"Sialana","first_name":"Fernando J.","full_name":"Sialana, Fernando J."},{"full_name":"Castilla, Laura","first_name":"Laura","last_name":"Castilla"},{"full_name":"Bae, Narkhyun","first_name":"Narkhyun","id":"3A5F7CD8-F248-11E8-B48F-1D18A9856A87","last_name":"Bae"},{"first_name":"Carolina","last_name":"Lobo","full_name":"Lobo, Carolina"},{"first_name":"Ana","last_name":"Peñalver","full_name":"Peñalver, Ana"},{"last_name":"García-Frutos","first_name":"Marina","full_name":"García-Frutos, Marina"},{"full_name":"Carro, David","first_name":"David","last_name":"Carro"},{"full_name":"Enrique, Victoria","first_name":"Victoria","last_name":"Enrique"},{"full_name":"Paz, José C.","first_name":"José C.","last_name":"Paz"},{"full_name":"Mirmira, Raghavendra G.","first_name":"Raghavendra G.","last_name":"Mirmira"},{"first_name":"Antonia","last_name":"Gutiérrez","full_name":"Gutiérrez, Antonia"},{"full_name":"Alonso, Francisco J.","first_name":"Francisco J.","last_name":"Alonso"},{"last_name":"Segura","first_name":"Juan A.","full_name":"Segura, Juan A."},{"full_name":"Matés, José M.","last_name":"Matés","first_name":"José M."},{"full_name":"Lubec, Gert","first_name":"Gert","last_name":"Lubec"},{"last_name":"Márquez","first_name":"Javier","full_name":"Márquez, Javier"}],"isi":1,"has_accepted_license":"1","type":"journal_article","date_published":"2020-02-10T00:00:00Z","month":"02","_id":"7487","citation":{"short":"A.R. López De La Oliva, J.A. Campos-Sandoval, M.C. Gómez-García, C. Cardona, M. Martín-Rufián, F.J. Sialana, L. Castilla, N. Bae, C. Lobo, A. Peñalver, M. García-Frutos, D. Carro, V. Enrique, J.C. Paz, R.G. Mirmira, A. Gutiérrez, F.J. Alonso, J.A. Segura, J.M. Matés, G. Lubec, J. Márquez, Scientific Reports 10 (2020).","apa":"López De La Oliva, A. R., Campos-Sandoval, J. A., Gómez-García, M. C., Cardona, C., Martín-Rufián, M., Sialana, F. J., … Márquez, J. (2020). Nuclear translocation of glutaminase GLS2 in human cancer cells associates with proliferation arrest and differentiation. <i>Scientific Reports</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41598-020-58264-4\">https://doi.org/10.1038/s41598-020-58264-4</a>","ista":"López De La Oliva AR, Campos-Sandoval JA, Gómez-García MC, Cardona C, Martín-Rufián M, Sialana FJ, Castilla L, Bae N, Lobo C, Peñalver A, García-Frutos M, Carro D, Enrique V, Paz JC, Mirmira RG, Gutiérrez A, Alonso FJ, Segura JA, Matés JM, Lubec G, Márquez J. 2020. Nuclear translocation of glutaminase GLS2 in human cancer cells associates with proliferation arrest and differentiation. Scientific reports. 10(1), 2259.","mla":"López De La Oliva, Amada R., et al. “Nuclear Translocation of Glutaminase GLS2 in Human Cancer Cells Associates with Proliferation Arrest and Differentiation.” <i>Scientific Reports</i>, vol. 10, no. 1, 2259, Springer Nature, 2020, doi:<a href=\"https://doi.org/10.1038/s41598-020-58264-4\">10.1038/s41598-020-58264-4</a>.","ama":"López De La Oliva AR, Campos-Sandoval JA, Gómez-García MC, et al. Nuclear translocation of glutaminase GLS2 in human cancer cells associates with proliferation arrest and differentiation. <i>Scientific reports</i>. 2020;10(1). doi:<a href=\"https://doi.org/10.1038/s41598-020-58264-4\">10.1038/s41598-020-58264-4</a>","ieee":"A. R. López De La Oliva <i>et al.</i>, “Nuclear translocation of glutaminase GLS2 in human cancer cells associates with proliferation arrest and differentiation,” <i>Scientific reports</i>, vol. 10, no. 1. Springer Nature, 2020.","chicago":"López De La Oliva, Amada R., José A. Campos-Sandoval, María C. Gómez-García, Carolina Cardona, Mercedes Martín-Rufián, Fernando J. Sialana, Laura Castilla, et al. “Nuclear Translocation of Glutaminase GLS2 in Human Cancer Cells Associates with Proliferation Arrest and Differentiation.” <i>Scientific Reports</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1038/s41598-020-58264-4\">https://doi.org/10.1038/s41598-020-58264-4</a>."},"date_updated":"2026-04-02T11:51:06Z","publisher":"Springer Nature","language":[{"iso":"eng"}],"file":[{"file_name":"2020_ScientificReport_Lopez.pdf","date_created":"2020-02-18T07:43:21Z","file_size":4703751,"checksum":"c780bd87476a9c9e12668ff66de3dc96","file_id":"7495","creator":"dernst","content_type":"application/pdf","relation":"main_file","date_updated":"2020-07-14T12:47:59Z","access_level":"open_access"}],"year":"2020"},{"corr_author":"1","publisher":"Springer Nature","language":[{"iso":"eng"}],"month":"11","date_updated":"2026-04-02T11:48:21Z","_id":"8787","citation":{"chicago":"Nicolai, Leo, Karin Schiefelbein, Silvia Lipsky, Alexander Leunig, Marie Hoffknecht, Kami Pekayvaz, Ben Raude, et al. “Vascular Surveillance by Haptotactic Blood Platelets in Inflammation and Infection.” <i>Nature Communications</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1038/s41467-020-19515-0\">https://doi.org/10.1038/s41467-020-19515-0</a>.","apa":"Nicolai, L., Schiefelbein, K., Lipsky, S., Leunig, A., Hoffknecht, M., Pekayvaz, K., … Gärtner, F. R. (2020). Vascular surveillance by haptotactic blood platelets in inflammation and infection. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-020-19515-0\">https://doi.org/10.1038/s41467-020-19515-0</a>","short":"L. Nicolai, K. Schiefelbein, S. Lipsky, A. Leunig, M. Hoffknecht, K. Pekayvaz, B. Raude, C. Marx, A. Ehrlich, J. Pircher, Z. Zhang, I. Saleh, A.-K. Marel, A. Löf, T. Petzold, M. Lorenz, K. Stark, R. Pick, G. Rosenberger, L. Weckbach, B. Uhl, S. Xia, C.A. Reichel, B. Walzog, C. Schulz, V. Zheden, M. Bender, R. Li, S. Massberg, F.R. Gärtner, Nature Communications 11 (2020).","ista":"Nicolai L, Schiefelbein K, Lipsky S, Leunig A, Hoffknecht M, Pekayvaz K, Raude B, Marx C, Ehrlich A, Pircher J, Zhang Z, Saleh I, Marel A-K, Löf A, Petzold T, Lorenz M, Stark K, Pick R, Rosenberger G, Weckbach L, Uhl B, Xia S, Reichel CA, Walzog B, Schulz C, Zheden V, Bender M, Li R, Massberg S, Gärtner FR. 2020. Vascular surveillance by haptotactic blood platelets in inflammation and infection. Nature Communications. 11, 5778.","ama":"Nicolai L, Schiefelbein K, Lipsky S, et al. Vascular surveillance by haptotactic blood platelets in inflammation and infection. <i>Nature Communications</i>. 2020;11. doi:<a href=\"https://doi.org/10.1038/s41467-020-19515-0\">10.1038/s41467-020-19515-0</a>","mla":"Nicolai, Leo, et al. “Vascular Surveillance by Haptotactic Blood Platelets in Inflammation and Infection.” <i>Nature Communications</i>, vol. 11, 5778, Springer Nature, 2020, doi:<a href=\"https://doi.org/10.1038/s41467-020-19515-0\">10.1038/s41467-020-19515-0</a>.","ieee":"L. Nicolai <i>et al.</i>, “Vascular surveillance by haptotactic blood platelets in inflammation and infection,” <i>Nature Communications</i>, vol. 11. Springer Nature, 2020."},"file":[{"success":1,"access_level":"open_access","date_updated":"2020-11-23T13:29:49Z","relation":"main_file","content_type":"application/pdf","creator":"dernst","file_id":"8798","date_created":"2020-11-23T13:29:49Z","checksum":"485b7b6cf30198ba0ce126491a28f125","file_size":7035340,"file_name":"2020_NatureComm_Nicolai.pdf"}],"acknowledgement":"We thank Sebastian Helmer, Nicole Blount, Christine Mann, and Beate Jantz for technical assistance; Hellen Ishikawa-Ankerhold for help and advice; Michael Sixt for critical\r\ndiscussions. This study was supported by the DFG SFB 914 (S.M. [B02 and Z01], K.Sch.\r\n[B02], B.W. [A02 and Z03], C.A.R. [B03], C.S. [A10], J.P. [Gerok position]), the DFG\r\nSFB 1123 (S.M. [B06]), the DFG FOR 2033 (S.M. and F.G.), the German Center for\r\nCardiovascular Research (DZHK) (Clinician Scientist Program [L.N.], MHA 1.4VD\r\n[S.M.], Postdoc Start-up Grant, 81×3600213 [F.G.]), FP7 program (project 260309,\r\nPRESTIGE [S.M.]), FöFoLe project 1015/1009 (L.N.), FöFoLe project 947 (F.G.), the\r\nFriedrich-Baur-Stiftung project 41/16 (F.G.), and LMUexcellence NFF (F.G.). This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (grant agreement no.\r\n833440) (S.M.). F.G. received funding from the European Union’s Horizon 2020 research\r\nand innovation program under the Marie Skłodowska-Curie grant agreement no.\r\n747687.","year":"2020","publication":"Nature Communications","ddc":["570"],"article_processing_charge":"No","publication_identifier":{"eissn":["2041-1723"]},"quality_controlled":"1","isi":1,"ec_funded":1,"title":"Vascular surveillance by haptotactic blood platelets in inflammation and infection","author":[{"last_name":"Nicolai","first_name":"Leo","full_name":"Nicolai, Leo"},{"full_name":"Schiefelbein, Karin","last_name":"Schiefelbein","first_name":"Karin"},{"full_name":"Lipsky, Silvia","first_name":"Silvia","last_name":"Lipsky"},{"last_name":"Leunig","first_name":"Alexander","full_name":"Leunig, Alexander"},{"first_name":"Marie","last_name":"Hoffknecht","full_name":"Hoffknecht, Marie"},{"last_name":"Pekayvaz","first_name":"Kami","full_name":"Pekayvaz, Kami"},{"first_name":"Ben","last_name":"Raude","full_name":"Raude, Ben"},{"full_name":"Marx, Charlotte","last_name":"Marx","first_name":"Charlotte"},{"first_name":"Andreas","last_name":"Ehrlich","full_name":"Ehrlich, Andreas"},{"full_name":"Pircher, Joachim","last_name":"Pircher","first_name":"Joachim"},{"full_name":"Zhang, Zhe","first_name":"Zhe","last_name":"Zhang"},{"last_name":"Saleh","first_name":"Inas","full_name":"Saleh, Inas"},{"last_name":"Marel","first_name":"Anna-Kristina","full_name":"Marel, Anna-Kristina"},{"last_name":"Löf","first_name":"Achim","full_name":"Löf, Achim"},{"full_name":"Petzold, Tobias","first_name":"Tobias","last_name":"Petzold"},{"last_name":"Lorenz","first_name":"Michael","full_name":"Lorenz, Michael"},{"last_name":"Stark","first_name":"Konstantin","full_name":"Stark, Konstantin"},{"last_name":"Pick","first_name":"Robert","full_name":"Pick, Robert"},{"full_name":"Rosenberger, Gerhild","last_name":"Rosenberger","first_name":"Gerhild"},{"full_name":"Weckbach, Ludwig","first_name":"Ludwig","last_name":"Weckbach"},{"full_name":"Uhl, Bernd","last_name":"Uhl","first_name":"Bernd"},{"full_name":"Xia, Sheng","first_name":"Sheng","last_name":"Xia"},{"full_name":"Reichel, Christoph Andreas","last_name":"Reichel","first_name":"Christoph Andreas"},{"full_name":"Walzog, Barbara","last_name":"Walzog","first_name":"Barbara"},{"full_name":"Schulz, Christian","first_name":"Christian","last_name":"Schulz"},{"orcid":"0000-0002-9438-4783","full_name":"Zheden, Vanessa","id":"39C5A68A-F248-11E8-B48F-1D18A9856A87","first_name":"Vanessa","last_name":"Zheden"},{"full_name":"Bender, Markus","last_name":"Bender","first_name":"Markus"},{"full_name":"Li, Rong","first_name":"Rong","last_name":"Li"},{"full_name":"Massberg, Steffen","first_name":"Steffen","last_name":"Massberg"},{"orcid":"0000-0001-6120-3723","last_name":"Gärtner","first_name":"Florian R","id":"397A88EE-F248-11E8-B48F-1D18A9856A87","full_name":"Gärtner, Florian R"}],"date_published":"2020-11-13T00:00:00Z","has_accepted_license":"1","type":"journal_article","publication_status":"published","status":"public","doi":"10.1038/s41467-020-19515-0","department":[{"_id":"MiSi"},{"_id":"EM-Fac"}],"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","project":[{"name":"Mechanical Adaptation of Lamellipodial Actin Networks in Migrating Cells","grant_number":"747687","_id":"260AA4E2-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"day":"13","oa":1,"file_date_updated":"2020-11-23T13:29:49Z","scopus_import":"1","external_id":{"pmid":["33188196"],"isi":["000594648000014"]},"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"intvolume":"        11","pmid":1,"oa_version":"Published Version","volume":11,"date_created":"2020-11-22T23:01:23Z","article_type":"original","article_number":"5778","related_material":{"link":[{"relation":"erratum","url":"https://doi.org/10.1038/s41467-022-31310-7"}]},"abstract":[{"lang":"eng","text":"Breakdown of vascular barriers is a major complication of inflammatory diseases. Anucleate platelets form blood-clots during thrombosis, but also play a crucial role in inflammation. While spatio-temporal dynamics of clot formation are well characterized, the cell-biological mechanisms of platelet recruitment to inflammatory micro-environments remain incompletely understood. Here we identify Arp2/3-dependent lamellipodia formation as a prominent morphological feature of immune-responsive platelets. Platelets use lamellipodia to scan for fibrin(ogen) deposited on the inflamed vasculature and to directionally spread, to polarize and to govern haptotactic migration along gradients of the adhesive ligand. Platelet-specific abrogation of Arp2/3 interferes with haptotactic repositioning of platelets to microlesions, thus impairing vascular sealing and provoking inflammatory microbleeding. During infection, haptotaxis promotes capture of bacteria and prevents hematogenic dissemination, rendering platelets gate-keepers of the inflamed microvasculature. Consequently, these findings identify haptotaxis as a key effector function of immune-responsive platelets."}]},{"publication_identifier":{"eissn":["2055-0278"]},"quality_controlled":"1","article_processing_charge":"No","publication":"Nature Plants","type":"journal_article","date_published":"2020-05-01T00:00:00Z","title":"The lipid code-dependent phosphoswitch PDK1–D6PK activates PIN-mediated auxin efflux in Arabidopsis","author":[{"orcid":"0000-0002-0471-8285","id":"2DE75584-F248-11E8-B48F-1D18A9856A87","first_name":"Shutang","last_name":"Tan","full_name":"Tan, Shutang"},{"orcid":"0000-0001-7048-4627","first_name":"Xixi","id":"61A66458-47E9-11EA-85BA-8AEAAF14E49A","last_name":"Zhang","full_name":"Zhang, Xixi"},{"last_name":"Kong","first_name":"Wei","full_name":"Kong, Wei"},{"full_name":"Yang, Xiao-Li","first_name":"Xiao-Li","last_name":"Yang"},{"full_name":"Molnar, Gergely","last_name":"Molnar","first_name":"Gergely","id":"34F1AF46-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Vondráková","first_name":"Zuzana","full_name":"Vondráková, Zuzana"},{"first_name":"Roberta","last_name":"Filepová","full_name":"Filepová, Roberta"},{"first_name":"Jan","last_name":"Petrášek","full_name":"Petrášek, Jan"},{"orcid":"0000-0002-8302-7596","full_name":"Friml, Jiří","first_name":"Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml"},{"first_name":"Hong-Wei","last_name":"Xue","full_name":"Xue, Hong-Wei"}],"isi":1,"ec_funded":1,"month":"05","date_updated":"2026-04-02T11:50:26Z","_id":"7600","page":"556-569","citation":{"chicago":"Tan, Shutang, Xixi Zhang, Wei Kong, Xiao-Li Yang, Gergely Molnar, Zuzana Vondráková, Roberta Filepová, Jan Petrášek, Jiří Friml, and Hong-Wei Xue. “The Lipid Code-Dependent Phosphoswitch PDK1–D6PK Activates PIN-Mediated Auxin Efflux in Arabidopsis.” <i>Nature Plants</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1038/s41477-020-0648-9\">https://doi.org/10.1038/s41477-020-0648-9</a>.","mla":"Tan, Shutang, et al. “The Lipid Code-Dependent Phosphoswitch PDK1–D6PK Activates PIN-Mediated Auxin Efflux in Arabidopsis.” <i>Nature Plants</i>, vol. 6, Springer Nature, 2020, pp. 556–69, doi:<a href=\"https://doi.org/10.1038/s41477-020-0648-9\">10.1038/s41477-020-0648-9</a>.","ama":"Tan S, Zhang X, Kong W, et al. The lipid code-dependent phosphoswitch PDK1–D6PK activates PIN-mediated auxin efflux in Arabidopsis. <i>Nature Plants</i>. 2020;6:556-569. doi:<a href=\"https://doi.org/10.1038/s41477-020-0648-9\">10.1038/s41477-020-0648-9</a>","ieee":"S. Tan <i>et al.</i>, “The lipid code-dependent phosphoswitch PDK1–D6PK activates PIN-mediated auxin efflux in Arabidopsis,” <i>Nature Plants</i>, vol. 6. Springer Nature, pp. 556–569, 2020.","apa":"Tan, S., Zhang, X., Kong, W., Yang, X.-L., Molnar, G., Vondráková, Z., … Xue, H.-W. (2020). The lipid code-dependent phosphoswitch PDK1–D6PK activates PIN-mediated auxin efflux in Arabidopsis. <i>Nature Plants</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41477-020-0648-9\">https://doi.org/10.1038/s41477-020-0648-9</a>","short":"S. Tan, X. Zhang, W. Kong, X.-L. Yang, G. Molnar, Z. Vondráková, R. Filepová, J. Petrášek, J. Friml, H.-W. Xue, Nature Plants 6 (2020) 556–569.","ista":"Tan S, Zhang X, Kong W, Yang X-L, Molnar G, Vondráková Z, Filepová R, Petrášek J, Friml J, Xue H-W. 2020. The lipid code-dependent phosphoswitch PDK1–D6PK activates PIN-mediated auxin efflux in Arabidopsis. Nature Plants. 6, 556–569."},"publisher":"Springer Nature","language":[{"iso":"eng"}],"year":"2020","intvolume":"         6","external_id":{"pmid":["32393881"],"isi":["000531787500006"]},"scopus_import":"1","related_material":{"link":[{"relation":"erratum","url":"https://doi.org/10.1038/s41477-020-0719-y"}]},"abstract":[{"text":"Directional intercellular transport of the phytohormone auxin mediated by PIN FORMED (PIN) efflux carriers plays essential roles in both coordinating patterning processes and integrating multiple external cues by rapidly redirecting auxin fluxes. Multilevel regulations of PIN activity under internal and external cues are complicated; however, the underlying molecular mechanism remains elusive. Here we demonstrate that 3’-Phosphoinositide-Dependent Protein Kinase1 (PDK1), which is conserved in plants and mammals, functions as a molecular hub integrating the upstream lipid signalling and the downstream substrate activity through phosphorylation. Genetic analysis uncovers that loss-of-function Arabidopsis mutant pdk1.1 pdk1.2 exhibits a plethora of abnormalities in organogenesis and growth, due to the defective PIN-dependent auxin transport. Further cellular and biochemical analyses reveal that PDK1 phosphorylates D6 Protein Kinase to facilitate its activity towards PIN proteins. Our studies establish a lipid-dependent phosphorylation cascade connecting membrane composition-based cellular signalling with plant growth and patterning by regulating morphogenetic auxin fluxes.","lang":"eng"}],"volume":6,"date_created":"2020-03-21T16:34:16Z","article_type":"original","pmid":1,"oa_version":"Preprint","project":[{"_id":"261099A6-B435-11E9-9278-68D0E5697425","grant_number":"742985","call_identifier":"H2020","name":"Tracing Evolution of Auxin Transport and Polarity in Plants"},{"name":"Molecular Mechanism underlying Salicylic Acid Regulation of Endocytic Trafficking in Arabidopsis","_id":"256FEF10-B435-11E9-9278-68D0E5697425","grant_number":"723-2015"}],"day":"01","acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"}],"doi":"10.1038/s41477-020-0648-9","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","department":[{"_id":"JiFr"}],"status":"public","publication_status":"published","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1101/755504"}],"oa":1},{"_id":"7632","citation":{"chicago":"Tombaz, Tuce, Benjamin A. Dunn, Karoline Hovde, Ryan J Cubero, Bartul Mimica, Pranav Mamidanna, Yasser Roudi, and Jonathan R. Whitlock. “Action Representation in the Mouse Parieto-Frontal Network.” <i>Scientific Reports</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1038/s41598-020-62089-6\">https://doi.org/10.1038/s41598-020-62089-6</a>.","ieee":"T. Tombaz <i>et al.</i>, “Action representation in the mouse parieto-frontal network,” <i>Scientific reports</i>, vol. 10, no. 1. Springer Nature, 2020.","ama":"Tombaz T, Dunn BA, Hovde K, et al. Action representation in the mouse parieto-frontal network. <i>Scientific reports</i>. 2020;10(1). doi:<a href=\"https://doi.org/10.1038/s41598-020-62089-6\">10.1038/s41598-020-62089-6</a>","mla":"Tombaz, Tuce, et al. “Action Representation in the Mouse Parieto-Frontal Network.” <i>Scientific Reports</i>, vol. 10, no. 1, 5559, Springer Nature, 2020, doi:<a href=\"https://doi.org/10.1038/s41598-020-62089-6\">10.1038/s41598-020-62089-6</a>.","ista":"Tombaz T, Dunn BA, Hovde K, Cubero RJ, Mimica B, Mamidanna P, Roudi Y, Whitlock JR. 2020. Action representation in the mouse parieto-frontal network. Scientific reports. 10(1), 5559.","apa":"Tombaz, T., Dunn, B. A., Hovde, K., Cubero, R. J., Mimica, B., Mamidanna, P., … Whitlock, J. R. (2020). Action representation in the mouse parieto-frontal network. <i>Scientific Reports</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41598-020-62089-6\">https://doi.org/10.1038/s41598-020-62089-6</a>","short":"T. Tombaz, B.A. Dunn, K. Hovde, R.J. Cubero, B. Mimica, P. Mamidanna, Y. Roudi, J.R. Whitlock, Scientific Reports 10 (2020)."},"date_updated":"2026-04-02T14:23:52Z","month":"03","language":[{"iso":"eng"}],"publisher":"Springer Nature","file":[{"content_type":"application/pdf","relation":"main_file","date_updated":"2020-07-14T12:48:01Z","access_level":"open_access","file_name":"2020_ScientificReports_Tombaz.pdf","date_created":"2020-04-06T10:44:23Z","checksum":"e6cfaaaf7986532132934400038b824a","file_size":2621249,"file_id":"7644","creator":"dernst"}],"year":"2020","ddc":["570"],"publication":"Scientific reports","quality_controlled":"1","publication_identifier":{"eissn":["2045-2322"]},"article_processing_charge":"No","author":[{"full_name":"Tombaz, Tuce","last_name":"Tombaz","first_name":"Tuce"},{"first_name":"Benjamin A.","last_name":"Dunn","full_name":"Dunn, Benjamin A."},{"last_name":"Hovde","first_name":"Karoline","full_name":"Hovde, Karoline"},{"last_name":"Cubero","id":"850B2E12-9CD4-11E9-837F-E719E6697425","first_name":"Ryan J","full_name":"Cubero, Ryan J","orcid":"0000-0003-0002-1867"},{"full_name":"Mimica, Bartul","first_name":"Bartul","last_name":"Mimica"},{"full_name":"Mamidanna, Pranav","last_name":"Mamidanna","first_name":"Pranav"},{"full_name":"Roudi, Yasser","first_name":"Yasser","last_name":"Roudi"},{"full_name":"Whitlock, Jonathan R.","first_name":"Jonathan R.","last_name":"Whitlock"}],"title":"Action representation in the mouse parieto-frontal network","isi":1,"has_accepted_license":"1","type":"journal_article","date_published":"2020-03-27T00:00:00Z","status":"public","publication_status":"published","day":"27","department":[{"_id":"SaSi"}],"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","doi":"10.1038/s41598-020-62089-6","issue":"1","file_date_updated":"2020-07-14T12:48:01Z","oa":1,"external_id":{"isi":["000560406800007"]},"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"scopus_import":"1","intvolume":"        10","oa_version":"Published Version","abstract":[{"text":"The posterior parietal cortex (PPC) and frontal motor areas comprise a cortical network supporting goal-directed behaviour, with functions including sensorimotor transformations and decision making. In primates, this network links performed and observed actions via mirror neurons, which fire both when individuals perform an action and when they observe the same action performed by a conspecific. Mirror neurons are believed to be important for social learning, but it is not known whether mirror-like neurons occur in similar networks in other social species, such as rodents, or if they can be measured in such models using paradigms where observers passively view a demonstrator. Therefore, we imaged Ca2+ responses in PPC and secondary motor cortex (M2) while mice performed and observed pellet-reaching and wheel-running tasks, and found that cell populations in both areas robustly encoded several naturalistic behaviours. However, neural responses to the same set of observed actions were absent, although we verified that observer mice were attentive to performers and that PPC neurons responded reliably to visual cues. Statistical modelling also indicated that executed actions outperformed observed actions in predicting neural responses. These results raise the possibility that sensorimotor action recognition in rodents could take place outside of the parieto-frontal circuit, and underscore that detecting socially-driven neural coding depends critically on the species and behavioural paradigm used.","lang":"eng"}],"article_number":"5559","article_type":"original","volume":10,"date_created":"2020-04-05T22:00:47Z"},{"language":[{"iso":"eng"}],"publisher":"IOP Publishing","citation":{"chicago":"Plesch, Martin, Samuel Plesník, and Natalia Ruzickova. “The IYPT and the ‘Ring Oiler’ Problem.” <i>European Journal of Physics</i>. IOP Publishing, 2020. <a href=\"https://doi.org/10.1088/1361-6404/ab6414\">https://doi.org/10.1088/1361-6404/ab6414</a>.","apa":"Plesch, M., Plesník, S., &#38; Ruzickova, N. (2020). The IYPT and the “Ring Oiler” problem. <i>European Journal of Physics</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/1361-6404/ab6414\">https://doi.org/10.1088/1361-6404/ab6414</a>","short":"M. Plesch, S. Plesník, N. Ruzickova, European Journal of Physics 41 (2020).","ista":"Plesch M, Plesník S, Ruzickova N. 2020. The IYPT and the ‘Ring Oiler’ problem. European Journal of Physics. 41(3), 034001.","mla":"Plesch, Martin, et al. “The IYPT and the ‘Ring Oiler’ Problem.” <i>European Journal of Physics</i>, vol. 41, no. 3, 034001, IOP Publishing, 2020, doi:<a href=\"https://doi.org/10.1088/1361-6404/ab6414\">10.1088/1361-6404/ab6414</a>.","ama":"Plesch M, Plesník S, Ruzickova N. The IYPT and the “Ring Oiler” problem. <i>European Journal of Physics</i>. 2020;41(3). doi:<a href=\"https://doi.org/10.1088/1361-6404/ab6414\">10.1088/1361-6404/ab6414</a>","ieee":"M. Plesch, S. Plesník, and N. Ruzickova, “The IYPT and the ‘Ring Oiler’ problem,” <i>European Journal of Physics</i>, vol. 41, no. 3. IOP Publishing, 2020."},"_id":"7622","date_updated":"2026-04-02T14:22:29Z","month":"02","file":[{"file_id":"7641","creator":"dernst","file_name":"2020_EuropJourPhysics_Plesch.pdf","checksum":"47dda164e33b6c0c6c3ed14aad298376","file_size":1533672,"date_created":"2020-04-06T08:53:53Z","access_level":"open_access","date_updated":"2020-07-14T12:48:01Z","content_type":"application/pdf","relation":"main_file"}],"year":"2020","publication":"European Journal of Physics","ddc":["530"],"article_processing_charge":"No","quality_controlled":"1","publication_identifier":{"issn":["0143-0807"],"eissn":["1361-6404"]},"arxiv":1,"isi":1,"author":[{"full_name":"Plesch, Martin","last_name":"Plesch","first_name":"Martin"},{"last_name":"Plesník","first_name":"Samuel","full_name":"Plesník, Samuel"},{"full_name":"Ruzickova, Natalia","first_name":"Natalia","id":"D2761128-D73D-11E9-A1BF-BA0DE6697425","last_name":"Ruzickova"}],"title":"The IYPT and the 'Ring Oiler' problem","date_published":"2020-02-24T00:00:00Z","has_accepted_license":"1","type":"journal_article","publication_status":"published","status":"public","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","department":[{"_id":"FyKo"}],"doi":"10.1088/1361-6404/ab6414","day":"24","issue":"3","oa":1,"file_date_updated":"2020-07-14T12:48:01Z","scopus_import":"1","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"external_id":{"isi":["000537425400001"],"arxiv":["1910.03290"]},"intvolume":"        41","oa_version":"Published Version","article_type":"original","volume":41,"date_created":"2020-03-31T11:25:04Z","abstract":[{"lang":"eng","text":"The International Young Physicists' Tournament (IYPT) continued in 2018 in Beijing, China and 2019 in Warsaw, Poland with its 31st and 32nd editions. The IYPT is a modern scientific competition for teams of high school students, also known as the Physics World Cup. It involves long-term theoretical and experimental work focused on solving 17 publicly announced open-ended problems in teams of five. On top of that, teams have to present their solutions in front of other teams and a scientific jury, and get opposed and reviewed by their peers. Here we present a brief information about the competition with a specific focus on one of the IYPT 2018 tasks, the 'Ring Oiler'. This seemingly simple mechanical problem appeared to be of such a complexity that even the dozens of participating teams and jurying scientists were not able to solve all of its subtleties."}],"article_number":"034001"},{"status":"public","publication_status":"published","day":"17","doi":"10.1016/j.softx.2019.100395","department":[{"_id":"BjHo"}],"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","oa":1,"file_date_updated":"2020-07-14T12:47:56Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"external_id":{"isi":["000552271200011"],"arxiv":["1908.00587"]},"scopus_import":"1","intvolume":"        11","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","oa_version":"Published Version","article_number":"100395","abstract":[{"lang":"eng","text":"We present nsCouette, a highly scalable software tool to solve the Navier–Stokes equations for incompressible fluid flow between differentially heated and independently rotating, concentric cylinders. It is based on a pseudospectral spatial discretization and dynamic time-stepping. It is implemented in modern Fortran with a hybrid MPI-OpenMP parallelization scheme and thus designed to compute turbulent flows at high Reynolds and Rayleigh numbers. An additional GPU implementation (C-CUDA) for intermediate problem sizes and a version for pipe flow (nsPipe) are also provided."}],"volume":11,"date_created":"2020-01-26T23:00:35Z","article_type":"original","month":"01","date_updated":"2026-04-02T14:16:50Z","_id":"7364","citation":{"ieee":"J. M. Lopez Alonso, D. Feldmann, M. Rampp, A. Vela-Martín, L. Shi, and M. Avila, “nsCouette – A high-performance code for direct numerical simulations of turbulent Taylor–Couette flow,” <i>SoftwareX</i>, vol. 11. Elsevier, 2020.","mla":"Lopez Alonso, Jose M., et al. “NsCouette – A High-Performance Code for Direct Numerical Simulations of Turbulent Taylor–Couette Flow.” <i>SoftwareX</i>, vol. 11, 100395, Elsevier, 2020, doi:<a href=\"https://doi.org/10.1016/j.softx.2019.100395\">10.1016/j.softx.2019.100395</a>.","ama":"Lopez Alonso JM, Feldmann D, Rampp M, Vela-Martín A, Shi L, Avila M. nsCouette – A high-performance code for direct numerical simulations of turbulent Taylor–Couette flow. <i>SoftwareX</i>. 2020;11. doi:<a href=\"https://doi.org/10.1016/j.softx.2019.100395\">10.1016/j.softx.2019.100395</a>","ista":"Lopez Alonso JM, Feldmann D, Rampp M, Vela-Martín A, Shi L, Avila M. 2020. nsCouette – A high-performance code for direct numerical simulations of turbulent Taylor–Couette flow. SoftwareX. 11, 100395.","apa":"Lopez Alonso, J. M., Feldmann, D., Rampp, M., Vela-Martín, A., Shi, L., &#38; Avila, M. (2020). nsCouette – A high-performance code for direct numerical simulations of turbulent Taylor–Couette flow. <i>SoftwareX</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.softx.2019.100395\">https://doi.org/10.1016/j.softx.2019.100395</a>","short":"J.M. Lopez Alonso, D. Feldmann, M. Rampp, A. Vela-Martín, L. Shi, M. Avila, SoftwareX 11 (2020).","chicago":"Lopez Alonso, Jose M, Daniel Feldmann, Markus Rampp, Alberto Vela-Martín, Liang Shi, and Marc Avila. “NsCouette – A High-Performance Code for Direct Numerical Simulations of Turbulent Taylor–Couette Flow.” <i>SoftwareX</i>. Elsevier, 2020. <a href=\"https://doi.org/10.1016/j.softx.2019.100395\">https://doi.org/10.1016/j.softx.2019.100395</a>."},"corr_author":"1","publisher":"Elsevier","language":[{"iso":"eng"}],"file":[{"content_type":"application/pdf","relation":"main_file","date_updated":"2020-07-14T12:47:56Z","access_level":"open_access","file_name":"2020_SoftwareX_Lopez.pdf","date_created":"2020-01-27T07:32:46Z","checksum":"2af1a1a3cc33557b345145276f221668","file_size":679707,"file_id":"7365","creator":"dernst"}],"year":"2020","ddc":["000"],"publication":"SoftwareX","publication_identifier":{"eissn":["2352-7110"]},"quality_controlled":"1","article_processing_charge":"No","title":"nsCouette – A high-performance code for direct numerical simulations of turbulent Taylor–Couette flow","author":[{"last_name":"Lopez Alonso","id":"40770848-F248-11E8-B48F-1D18A9856A87","first_name":"Jose M","full_name":"Lopez Alonso, Jose M","orcid":"0000-0002-0384-2022"},{"first_name":"Daniel","last_name":"Feldmann","full_name":"Feldmann, Daniel"},{"full_name":"Rampp, Markus","last_name":"Rampp","first_name":"Markus"},{"full_name":"Vela-Martín, Alberto","last_name":"Vela-Martín","first_name":"Alberto"},{"full_name":"Shi, Liang","first_name":"Liang","id":"374A3F1A-F248-11E8-B48F-1D18A9856A87","last_name":"Shi"},{"full_name":"Avila, Marc","last_name":"Avila","first_name":"Marc"}],"isi":1,"arxiv":1,"has_accepted_license":"1","type":"journal_article","date_published":"2020-01-17T00:00:00Z"},{"date_published":"2020-01-29T00:00:00Z","type":"journal_article","isi":1,"arxiv":1,"title":"Decomposing information into copying versus transformation","author":[{"first_name":"Artemy","last_name":"Kolchinsky","full_name":"Kolchinsky, Artemy"},{"full_name":"Corominas-Murtra, Bernat","id":"43BE2298-F248-11E8-B48F-1D18A9856A87","first_name":"Bernat","last_name":"Corominas-Murtra","orcid":"0000-0001-9806-5643"}],"article_processing_charge":"No","publication_identifier":{"eissn":["1742-5662"]},"quality_controlled":"1","publication":"Journal of the Royal Society Interface","year":"2020","acknowledgement":"AK was supported by Grant No. FQXi-RFP-1622 from the FQXi foundation, and Grant No. CHE-1648973 from the U.S.\r\nNational Science Foundation. AK would like to thank the Santa Fe Institute for supporting this research. The authors\r\nthank Jordi Fortuny, Rudolf Hanel, Joshua Garland, and Blai Vidiella for helpful discussions, as well as the anonymous\r\nreviewers for their insightful suggestions. ","publisher":"The Royal Society","language":[{"iso":"eng"}],"month":"01","_id":"7431","date_updated":"2026-04-02T14:17:25Z","citation":{"chicago":"Kolchinsky, Artemy, and Bernat Corominas-Murtra. “Decomposing Information into Copying versus Transformation.” <i>Journal of the Royal Society Interface</i>. The Royal Society, 2020. <a href=\"https://doi.org/10.1098/rsif.2019.0623\">https://doi.org/10.1098/rsif.2019.0623</a>.","ama":"Kolchinsky A, Corominas-Murtra B. Decomposing information into copying versus transformation. <i>Journal of the Royal Society Interface</i>. 2020;17(162). doi:<a href=\"https://doi.org/10.1098/rsif.2019.0623\">10.1098/rsif.2019.0623</a>","mla":"Kolchinsky, Artemy, and Bernat Corominas-Murtra. “Decomposing Information into Copying versus Transformation.” <i>Journal of the Royal Society Interface</i>, vol. 17, no. 162, 0623, The Royal Society, 2020, doi:<a href=\"https://doi.org/10.1098/rsif.2019.0623\">10.1098/rsif.2019.0623</a>.","ieee":"A. Kolchinsky and B. Corominas-Murtra, “Decomposing information into copying versus transformation,” <i>Journal of the Royal Society Interface</i>, vol. 17, no. 162. The Royal Society, 2020.","apa":"Kolchinsky, A., &#38; Corominas-Murtra, B. (2020). Decomposing information into copying versus transformation. <i>Journal of the Royal Society Interface</i>. The Royal Society. <a href=\"https://doi.org/10.1098/rsif.2019.0623\">https://doi.org/10.1098/rsif.2019.0623</a>","short":"A. Kolchinsky, B. Corominas-Murtra, Journal of the Royal Society Interface 17 (2020).","ista":"Kolchinsky A, Corominas-Murtra B. 2020. Decomposing information into copying versus transformation. Journal of the Royal Society Interface. 17(162), 0623."},"volume":17,"date_created":"2020-02-02T23:01:03Z","article_type":"original","article_number":"0623","abstract":[{"text":"In many real-world systems, information can be transmitted in two qualitatively different ways: by copying or by transformation. Copying occurs when messages are transmitted without modification, e.g. when an offspring receives an unaltered copy of a gene from its parent. Transformation occurs when messages are modified systematically during transmission, e.g. when mutational biases occur during genetic replication. Standard information-theoretic measures do not distinguish these two modes of information transfer, although they may reflect different mechanisms and have different functional consequences. Starting from a few simple axioms, we derive a decomposition of mutual information into the information transmitted by copying versus the information transmitted by transformation. We begin with a decomposition that applies when the source and destination of the channel have the same set of messages and a notion of message identity exists. We then generalize our decomposition to other kinds of channels, which can involve different source and destination sets and broader notions of similarity. In addition, we show that copy information can be interpreted as the minimal work needed by a physical copying process, which is relevant for understanding the physics of replication. We use the proposed decomposition to explore a model of amino acid substitution rates. Our results apply to any system in which the fidelity of copying, rather than simple predictability, is of critical relevance.","lang":"eng"}],"pmid":1,"oa_version":"Preprint","intvolume":"        17","scopus_import":"1","external_id":{"pmid":["31964273"],"arxiv":["1903.10693"],"isi":["000538369800002"]},"oa":1,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1903.10693"}],"issue":"162","doi":"10.1098/rsif.2019.0623","department":[{"_id":"EdHa"}],"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","day":"29","publication_status":"published","status":"public"},{"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1811.06448"}],"oa":1,"issue":"2","day":"10","doi":"10.1088/1361-6544/ab5174","department":[{"_id":"JuFi"}],"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","status":"public","publication_status":"published","abstract":[{"lang":"eng","text":"The evolution of finitely many particles obeying Langevin dynamics is described by Dean–Kawasaki equations, a class of stochastic equations featuring a non-Lipschitz multiplicative noise in divergence form. We derive a regularised Dean–Kawasaki model based on second order Langevin dynamics by analysing a system of particles interacting via a pairwise potential. Key tools of our analysis are the propagation of chaos and Simon's compactness criterion. The model we obtain is a small-noise stochastic perturbation of the undamped McKean–Vlasov equation. We also provide a high-probability result for existence and uniqueness for our model."}],"date_created":"2020-04-05T22:00:49Z","volume":33,"article_type":"original","oa_version":"Preprint","intvolume":"        33","external_id":{"isi":["000508175400001"],"arxiv":["1811.06448"]},"scopus_import":"1","year":"2020","month":"01","citation":{"short":"F. Cornalba, T. Shardlow, J. Zimmer, Nonlinearity 33 (2020) 864–891.","apa":"Cornalba, F., Shardlow, T., &#38; Zimmer, J. (2020). From weakly interacting particles to a regularised Dean-Kawasaki model. <i>Nonlinearity</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/1361-6544/ab5174\">https://doi.org/10.1088/1361-6544/ab5174</a>","ista":"Cornalba F, Shardlow T, Zimmer J. 2020. From weakly interacting particles to a regularised Dean-Kawasaki model. Nonlinearity. 33(2), 864–891.","mla":"Cornalba, Federico, et al. “From Weakly Interacting Particles to a Regularised Dean-Kawasaki Model.” <i>Nonlinearity</i>, vol. 33, no. 2, IOP Publishing, 2020, pp. 864–91, doi:<a href=\"https://doi.org/10.1088/1361-6544/ab5174\">10.1088/1361-6544/ab5174</a>.","ama":"Cornalba F, Shardlow T, Zimmer J. From weakly interacting particles to a regularised Dean-Kawasaki model. <i>Nonlinearity</i>. 2020;33(2):864-891. doi:<a href=\"https://doi.org/10.1088/1361-6544/ab5174\">10.1088/1361-6544/ab5174</a>","ieee":"F. Cornalba, T. Shardlow, and J. Zimmer, “From weakly interacting particles to a regularised Dean-Kawasaki model,” <i>Nonlinearity</i>, vol. 33, no. 2. IOP Publishing, pp. 864–891, 2020.","chicago":"Cornalba, Federico, Tony Shardlow, and Johannes Zimmer. “From Weakly Interacting Particles to a Regularised Dean-Kawasaki Model.” <i>Nonlinearity</i>. IOP Publishing, 2020. <a href=\"https://doi.org/10.1088/1361-6544/ab5174\">https://doi.org/10.1088/1361-6544/ab5174</a>."},"_id":"7637","page":"864-891","date_updated":"2026-04-02T14:26:08Z","publisher":"IOP Publishing","language":[{"iso":"eng"}],"type":"journal_article","date_published":"2020-01-10T00:00:00Z","title":"From weakly interacting particles to a regularised Dean-Kawasaki model","author":[{"full_name":"Cornalba, Federico","id":"2CEB641C-A400-11E9-A717-D712E6697425","first_name":"Federico","last_name":"Cornalba","orcid":"0000-0002-6269-5149"},{"full_name":"Shardlow, Tony","first_name":"Tony","last_name":"Shardlow"},{"last_name":"Zimmer","first_name":"Johannes","full_name":"Zimmer, Johannes"}],"isi":1,"arxiv":1,"publication_identifier":{"eissn":["1361-6544"],"issn":["0951-7715"]},"quality_controlled":"1","article_processing_charge":"No","publication":"Nonlinearity"}]