[{"title":"Unified Hanani Tutte theorem","date_created":"2018-12-11T11:48:32Z","oa_version":"Published Version","publication_identifier":{"issn":["1077-8926"]},"file":[{"file_id":"5853","creator":"dernst","date_updated":"2020-07-14T12:48:06Z","relation":"main_file","file_name":"2017_ElectrCombi_Fulek.pdf","checksum":"ef320cff0f062051e858f929be6a3581","date_created":"2019-01-18T14:04:08Z","file_size":236944,"content_type":"application/pdf","access_level":"open_access"}],"publication_status":"published","publist_id":"6859","article_processing_charge":"No","corr_author":"1","publisher":"International Press","volume":24,"author":[{"full_name":"Fulek, Radoslav","last_name":"Fulek","id":"39F3FFE4-F248-11E8-B48F-1D18A9856A87","first_name":"Radoslav","orcid":"0000-0001-8485-1774"},{"first_name":"Jan","last_name":"Kynčl","full_name":"Kynčl, Jan"},{"first_name":"Dömötör","last_name":"Pálvölgyi","full_name":"Pálvölgyi, Dömötör"}],"month":"07","department":[{"_id":"UlWa"}],"article_type":"original","project":[{"grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme"}],"oa":1,"doi":"10.37236/6663","date_published":"2017-07-28T00:00:00Z","intvolume":"        24","article_number":"P3.18","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["000"],"year":"2017","citation":{"short":"R. Fulek, J. Kynčl, D. Pálvölgyi, Electronic Journal of Combinatorics 24 (2017).","ieee":"R. Fulek, J. Kynčl, and D. Pálvölgyi, “Unified Hanani Tutte theorem,” <i>Electronic Journal of Combinatorics</i>, vol. 24, no. 3. International Press, 2017.","mla":"Fulek, Radoslav, et al. “Unified Hanani Tutte Theorem.” <i>Electronic Journal of Combinatorics</i>, vol. 24, no. 3, P3.18, International Press, 2017, doi:<a href=\"https://doi.org/10.37236/6663\">10.37236/6663</a>.","apa":"Fulek, R., Kynčl, J., &#38; Pálvölgyi, D. (2017). Unified Hanani Tutte theorem. <i>Electronic Journal of Combinatorics</i>. International Press. <a href=\"https://doi.org/10.37236/6663\">https://doi.org/10.37236/6663</a>","ista":"Fulek R, Kynčl J, Pálvölgyi D. 2017. Unified Hanani Tutte theorem. Electronic Journal of Combinatorics. 24(3), P3.18.","ama":"Fulek R, Kynčl J, Pálvölgyi D. Unified Hanani Tutte theorem. <i>Electronic Journal of Combinatorics</i>. 2017;24(3). doi:<a href=\"https://doi.org/10.37236/6663\">10.37236/6663</a>","chicago":"Fulek, Radoslav, Jan Kynčl, and Dömötör Pálvölgyi. “Unified Hanani Tutte Theorem.” <i>Electronic Journal of Combinatorics</i>. International Press, 2017. <a href=\"https://doi.org/10.37236/6663\">https://doi.org/10.37236/6663</a>."},"day":"28","has_accepted_license":"1","_id":"795","language":[{"iso":"eng"}],"abstract":[{"text":"We introduce a common generalization of the strong Hanani–Tutte theorem and the weak Hanani–Tutte theorem: if a graph G has a drawing D in the plane where every pair of independent edges crosses an even number of times, then G has a planar drawing preserving the rotation of each vertex whose incident edges cross each other evenly in D. The theorem is implicit in the proof of the strong Hanani–Tutte theorem by Pelsmajer, Schaefer and Štefankovič. We give a new, somewhat simpler proof.","lang":"eng"}],"quality_controlled":"1","type":"journal_article","issue":"3","ec_funded":1,"scopus_import":"1","status":"public","date_updated":"2025-07-10T11:54:52Z","publication":"Electronic Journal of Combinatorics","file_date_updated":"2020-07-14T12:48:06Z"},{"publication_status":"published","publist_id":"6857","arxiv":1,"publication_identifier":{"issn":["0003-6951"]},"title":"Al transmon qubits on silicon on insulator for quantum device integration","date_created":"2018-12-11T11:48:33Z","oa_version":"Submitted Version","doi":"10.1063/1.4994661","oa":1,"acknowledgement":"This work was supported by the AFOSR MURI Quantum Photonic Matter (Grant No. 16RT0696), the AFOSR MURI Wiring Quantum Networks with Mechanical Transducers (Grant No. FA9550-15-1-0015), the Institute for Quantum Information and Matter, an NSF Physics Frontiers Center (Grant No. PHY-1125565) with the support of the Gordon and Betty Moore Foundation, and the Kavli Nanoscience Institute at Caltech. A.J.K. acknowledges the IQIM Postdoctoral Fellowship.","author":[{"last_name":"Keller","full_name":"Keller, Andrew J","first_name":"Andrew J"},{"last_name":"Dieterle","full_name":"Dieterle, Paul","first_name":"Paul"},{"first_name":"Michael","last_name":"Fang","full_name":"Fang, Michael"},{"first_name":"Brett","last_name":"Berger","full_name":"Berger, Brett"},{"full_name":"Fink, Johannes M","last_name":"Fink","first_name":"Johannes M","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8112-028X"},{"last_name":"Painter","full_name":"Painter, Oskar","first_name":"Oskar"}],"volume":111,"department":[{"_id":"JoFi"}],"month":"07","article_processing_charge":"No","publisher":"American Institute of Physics","external_id":{"arxiv":["1703.10195"],"isi":["000406779700031"]},"_id":"796","abstract":[{"lang":"eng","text":"We present the fabrication and characterization of an aluminum transmon qubit on a silicon-on-insulator substrate. Key to the qubit fabrication is the use of an anhydrous hydrofluoric vapor process which selectively removes the lossy silicon oxide buried underneath the silicon device layer. For a 5.6 GHz qubit measured dispersively by a 7.1 GHz resonator, we find T1 = 3.5 μs and T∗2 = 2.2 μs. This process in principle permits the co-fabrication of silicon photonic and mechanical elements, providing a route towards chip-scale integration of electro-opto-mechanical transducers for quantum networking of superconducting microwave quantum circuits. The additional processing steps are compatible with established fabrication techniques for aluminum transmon qubits on silicon."}],"language":[{"iso":"eng"}],"quality_controlled":"1","type":"journal_article","citation":{"apa":"Keller, A. J., Dieterle, P., Fang, M., Berger, B., Fink, J. M., &#38; Painter, O. (2017). Al transmon qubits on silicon on insulator for quantum device integration. <i>Applied Physics Letters</i>. American Institute of Physics. <a href=\"https://doi.org/10.1063/1.4994661\">https://doi.org/10.1063/1.4994661</a>","short":"A.J. Keller, P. Dieterle, M. Fang, B. Berger, J.M. Fink, O. Painter, Applied Physics Letters 111 (2017).","ieee":"A. J. Keller, P. Dieterle, M. Fang, B. Berger, J. M. Fink, and O. Painter, “Al transmon qubits on silicon on insulator for quantum device integration,” <i>Applied Physics Letters</i>, vol. 111, no. 4. American Institute of Physics, 2017.","mla":"Keller, Andrew J., et al. “Al Transmon Qubits on Silicon on Insulator for Quantum Device Integration.” <i>Applied Physics Letters</i>, vol. 111, no. 4, 042603, American Institute of Physics, 2017, doi:<a href=\"https://doi.org/10.1063/1.4994661\">10.1063/1.4994661</a>.","chicago":"Keller, Andrew J, Paul Dieterle, Michael Fang, Brett Berger, Johannes M Fink, and Oskar Painter. “Al Transmon Qubits on Silicon on Insulator for Quantum Device Integration.” <i>Applied Physics Letters</i>. American Institute of Physics, 2017. <a href=\"https://doi.org/10.1063/1.4994661\">https://doi.org/10.1063/1.4994661</a>.","ista":"Keller AJ, Dieterle P, Fang M, Berger B, Fink JM, Painter O. 2017. Al transmon qubits on silicon on insulator for quantum device integration. Applied Physics Letters. 111(4), 042603.","ama":"Keller AJ, Dieterle P, Fang M, Berger B, Fink JM, Painter O. Al transmon qubits on silicon on insulator for quantum device integration. <i>Applied Physics Letters</i>. 2017;111(4). doi:<a href=\"https://doi.org/10.1063/1.4994661\">10.1063/1.4994661</a>"},"day":"01","intvolume":"       111","article_number":"042603","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2017","date_published":"2017-07-01T00:00:00Z","main_file_link":[{"url":"https://arxiv.org/abs/1703.10195","open_access":"1"}],"publication":"Applied Physics Letters","date_updated":"2025-06-04T09:48:41Z","isi":1,"status":"public","issue":"4","scopus_import":"1"},{"intvolume":"        48","year":"2017","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_published":"2017-05-01T00:00:00Z","date_created":"2018-12-11T11:48:33Z","title":"Photonenblockade aufgelöst","oa_version":"None","language":[{"iso":"eng"}],"_id":"797","abstract":[{"lang":"ger","text":"Phasenübergänge helfen beim Verständnis von Vielteilchensystemen in der Festkörperphysik und Fluiddynamik bis hin zur Teilchenphysik. Unserer internationalen Kollaboration ist es gelungen, einen neuartigen Phasenübergang in einem Quantensystem zu beobachten [1]. In einem Mikrowellenresonator konnte erstmals die spontane Zustandsänderung von undurchsichtig zu transparent nachgewiesen werden."}],"publist_id":"6856","type":"journal_article","quality_controlled":"1","publication_status":"published","day":"01","citation":{"mla":"Fink, Johannes M. “Photonenblockade Aufgelöst.” <i>Physik in Unserer Zeit</i>, vol. 48, no. 3, Wiley, 2017, pp. 111–13, doi:<a href=\"https://doi.org/10.1002/piuz.201770305\">10.1002/piuz.201770305</a>.","short":"J.M. Fink, Physik in Unserer Zeit 48 (2017) 111–113.","ieee":"J. M. Fink, “Photonenblockade aufgelöst,” <i>Physik in unserer Zeit</i>, vol. 48, no. 3. Wiley, pp. 111–113, 2017.","apa":"Fink, J. M. (2017). Photonenblockade aufgelöst. <i>Physik in Unserer Zeit</i>. Wiley. <a href=\"https://doi.org/10.1002/piuz.201770305\">https://doi.org/10.1002/piuz.201770305</a>","ama":"Fink JM. Photonenblockade aufgelöst. <i>Physik in unserer Zeit</i>. 2017;48(3):111-113. doi:<a href=\"https://doi.org/10.1002/piuz.201770305\">10.1002/piuz.201770305</a>","ista":"Fink JM. 2017. Photonenblockade aufgelöst. Physik in unserer Zeit. 48(3), 111–113.","chicago":"Fink, Johannes M. “Photonenblockade Aufgelöst.” <i>Physik in Unserer Zeit</i>. Wiley, 2017. <a href=\"https://doi.org/10.1002/piuz.201770305\">https://doi.org/10.1002/piuz.201770305</a>."},"corr_author":"1","article_processing_charge":"No","publisher":"Wiley","status":"public","page":"111 - 113","issue":"3","doi":"10.1002/piuz.201770305","publication":"Physik in unserer Zeit","date_updated":"2024-10-09T20:57:34Z","author":[{"orcid":"0000-0001-8112-028X","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","first_name":"Johannes M","last_name":"Fink","full_name":"Fink, Johannes M"}],"volume":48,"article_type":"original","department":[{"_id":"JoFi"}],"month":"05"},{"publication_identifier":{"issn":["2041-1723"]},"oa_version":"Published Version","title":"Mechanical on chip microwave circulator","date_created":"2018-12-11T11:48:33Z","publication_status":"published","publist_id":"6855","file":[{"file_name":"IST-2017-867-v1+1_s41467-017-01304-x.pdf","checksum":"b68dafa71d1834c23b742cd9987a3d5f","relation":"main_file","creator":"system","date_updated":"2020-07-14T12:48:06Z","file_id":"5145","access_level":"open_access","date_created":"2018-12-12T10:15:25Z","file_size":1467696,"content_type":"application/pdf"}],"publisher":"Nature Publishing Group","article_processing_charge":"Yes (in subscription journal)","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"corr_author":"1","pubrep_id":"867","oa":1,"doi":"10.1038/s41467-017-01304-x","month":"10","department":[{"_id":"JoFi"}],"project":[{"grant_number":"732894","call_identifier":"H2020","_id":"257EB838-B435-11E9-9278-68D0E5697425","name":"Hybrid Optomechanical Technologies"},{"name":"Microwave-to-Optical Quantum Link: Quantum Teleportation and Quantum Illumination with cavity Optomechanics","_id":"258047B6-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"707438"}],"author":[{"id":"2D25E1F6-F248-11E8-B48F-1D18A9856A87","first_name":"Shabir","orcid":"0000-0003-0415-1423","last_name":"Barzanjeh","full_name":"Barzanjeh, Shabir"},{"orcid":"0000-0001-6613-1378","first_name":"Matthias","id":"45598606-F248-11E8-B48F-1D18A9856A87","full_name":"Wulf, Matthias","last_name":"Wulf"},{"full_name":"Peruzzo, Matilda","last_name":"Peruzzo","id":"3F920B30-F248-11E8-B48F-1D18A9856A87","first_name":"Matilda","orcid":"0000-0002-3415-4628"},{"first_name":"Mahmoud","full_name":"Kalaee, Mahmoud","last_name":"Kalaee"},{"first_name":"Paul","full_name":"Dieterle, Paul","last_name":"Dieterle"},{"full_name":"Painter, Oskar","last_name":"Painter","first_name":"Oskar"},{"first_name":"Johannes M","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8112-028X","last_name":"Fink","full_name":"Fink, Johannes M"}],"volume":8,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["539"],"year":"2017","article_number":"1304","intvolume":"         8","date_published":"2017-10-16T00:00:00Z","quality_controlled":"1","type":"journal_article","external_id":{"isi":["000412999700021"]},"_id":"798","language":[{"iso":"eng"}],"abstract":[{"text":"Nonreciprocal circuit elements form an integral part of modern measurement and communication systems. Mathematically they require breaking of time-reversal symmetry, typically achieved using magnetic materials and more recently using the quantum Hall effect, parametric permittivity modulation or Josephson nonlinearities. Here we demonstrate an on-chip magnetic-free circulator based on reservoir-engineered electromechanic interactions. Directional circulation is achieved with controlled phase-sensitive interference of six distinct electro-mechanical signal conversion paths. The presented circulator is compact, its silicon-on-insulator platform is compatible with both superconducting qubits and silicon photonics, and its noise performance is close to the quantum limit. With a high dynamic range, a tunable bandwidth of up to 30 MHz and an in situ reconfigurability as beam splitter or wavelength converter, it could pave the way for superconducting qubit processors with multiplexed on-chip signal processing and readout.","lang":"eng"}],"citation":{"ama":"Barzanjeh S, Wulf M, Peruzzo M, et al. Mechanical on chip microwave circulator. <i>Nature Communications</i>. 2017;8(1). doi:<a href=\"https://doi.org/10.1038/s41467-017-01304-x\">10.1038/s41467-017-01304-x</a>","ista":"Barzanjeh S, Wulf M, Peruzzo M, Kalaee M, Dieterle P, Painter O, Fink JM. 2017. Mechanical on chip microwave circulator. Nature Communications. 8(1), 1304.","chicago":"Barzanjeh, Shabir, Matthias Wulf, Matilda Peruzzo, Mahmoud Kalaee, Paul Dieterle, Oskar Painter, and Johannes M Fink. “Mechanical on Chip Microwave Circulator.” <i>Nature Communications</i>. Nature Publishing Group, 2017. <a href=\"https://doi.org/10.1038/s41467-017-01304-x\">https://doi.org/10.1038/s41467-017-01304-x</a>.","mla":"Barzanjeh, Shabir, et al. “Mechanical on Chip Microwave Circulator.” <i>Nature Communications</i>, vol. 8, no. 1, 1304, Nature Publishing Group, 2017, doi:<a href=\"https://doi.org/10.1038/s41467-017-01304-x\">10.1038/s41467-017-01304-x</a>.","short":"S. Barzanjeh, M. Wulf, M. Peruzzo, M. Kalaee, P. Dieterle, O. Painter, J.M. Fink, Nature Communications 8 (2017).","ieee":"S. Barzanjeh <i>et al.</i>, “Mechanical on chip microwave circulator,” <i>Nature Communications</i>, vol. 8, no. 1. Nature Publishing Group, 2017.","apa":"Barzanjeh, S., Wulf, M., Peruzzo, M., Kalaee, M., Dieterle, P., Painter, O., &#38; Fink, J. M. (2017). Mechanical on chip microwave circulator. <i>Nature Communications</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/s41467-017-01304-x\">https://doi.org/10.1038/s41467-017-01304-x</a>"},"day":"16","has_accepted_license":"1","status":"public","scopus_import":"1","license":"https://creativecommons.org/licenses/by/4.0/","ec_funded":1,"issue":"1","file_date_updated":"2020-07-14T12:48:06Z","isi":1,"date_updated":"2025-07-10T11:54:54Z","publication":"Nature Communications"},{"scopus_import":"1","issue":"10","status":"public","isi":1,"date_updated":"2025-07-10T11:54:55Z","publication":"Plant and Cell Physiology","file_date_updated":"2020-07-14T12:48:06Z","date_published":"2017-08-21T00:00:00Z","year":"2017","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["581"],"intvolume":"        58","article_number":"1801-1811","has_accepted_license":"1","citation":{"short":"S. Kitakura, M. Adamowski, Y. Matsuura, L. Santuari, H. Kouno, K. Arima, C. Hardtke, J. Friml, T. Kakimoto, H. Tanaka, Plant and Cell Physiology 58 (2017).","ieee":"S. Kitakura <i>et al.</i>, “BEN3/BIG2 ARF GEF is involved in brefeldin a-sensitive trafficking at the trans-Golgi network/early endosome in Arabidopsis thaliana,” <i>Plant and Cell Physiology</i>, vol. 58, no. 10. Oxford University Press, 2017.","mla":"Kitakura, Saeko, et al. “BEN3/BIG2 ARF GEF Is Involved in Brefeldin a-Sensitive Trafficking at the Trans-Golgi Network/Early Endosome in Arabidopsis Thaliana.” <i>Plant and Cell Physiology</i>, vol. 58, no. 10, 1801–1811, Oxford University Press, 2017, doi:<a href=\"https://doi.org/10.1093/pcp/pcx118\">10.1093/pcp/pcx118</a>.","apa":"Kitakura, S., Adamowski, M., Matsuura, Y., Santuari, L., Kouno, H., Arima, K., … Tanaka, H. (2017). BEN3/BIG2 ARF GEF is involved in brefeldin a-sensitive trafficking at the trans-Golgi network/early endosome in Arabidopsis thaliana. <i>Plant and Cell Physiology</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/pcp/pcx118\">https://doi.org/10.1093/pcp/pcx118</a>","ista":"Kitakura S, Adamowski M, Matsuura Y, Santuari L, Kouno H, Arima K, Hardtke C, Friml J, Kakimoto T, Tanaka H. 2017. BEN3/BIG2 ARF GEF is involved in brefeldin a-sensitive trafficking at the trans-Golgi network/early endosome in Arabidopsis thaliana. Plant and Cell Physiology. 58(10), 1801–1811.","ama":"Kitakura S, Adamowski M, Matsuura Y, et al. BEN3/BIG2 ARF GEF is involved in brefeldin a-sensitive trafficking at the trans-Golgi network/early endosome in Arabidopsis thaliana. <i>Plant and Cell Physiology</i>. 2017;58(10). doi:<a href=\"https://doi.org/10.1093/pcp/pcx118\">10.1093/pcp/pcx118</a>","chicago":"Kitakura, Saeko, Maciek Adamowski, Yuki Matsuura, Luca Santuari, Hirotaka Kouno, Kohei Arima, Christian Hardtke, Jiří Friml, Tatsuo Kakimoto, and Hirokazu Tanaka. “BEN3/BIG2 ARF GEF Is Involved in Brefeldin a-Sensitive Trafficking at the Trans-Golgi Network/Early Endosome in Arabidopsis Thaliana.” <i>Plant and Cell Physiology</i>. Oxford University Press, 2017. <a href=\"https://doi.org/10.1093/pcp/pcx118\">https://doi.org/10.1093/pcp/pcx118</a>."},"day":"21","type":"journal_article","quality_controlled":"1","_id":"799","abstract":[{"text":"Membrane traffic at the trans-Golgi network (TGN) is crucial for correctly distributing various membrane proteins to their destination. Polarly localized auxin efflux proteins, including PIN-FORMED1 (PIN1), are dynamically transported between the endosomes and the plasma membrane (PM) in the plant cells. The intracellular trafficking of PIN1 protein is sensitive to a fungal toxin brefeldin A (BFA), which is known to inhibit guanine-nucleotide exchange factors for ADP ribosylation factors (ARF GEFs) such as GNOM. However, the molecular details of the BFA-sensitive trafficking pathway have not been revealed fully. In a previous study, we have identified an Arabidopsis mutant BFA-visualized endocytic trafficking defective 3 (ben3) which exhibited reduced sensitivity to BFA in terms of BFA-induced intracellular PIN1 agglomeration. Here, we show that BEN3 encodes a member of BIG family ARF GEFs, BIG2. Fluorescent proteins tagged BEN3/BIG2 co-localized with markers for TGN / early endosome (EE). Inspection of conditionally induced de novo synthesized PIN1 confirmed that its secretion to the PM is BFA-sensitive and established BEN3/BIG2 as a crucial component of this BFA action at the level of TGN/EE. Furthermore, ben3 mutation alleviated BFA-induced agglomeration of another TGN-localized ARF GEF BEN1/MIN7. Taken together our results suggest that BEN3/BIG2 is an ARF GEF component, which confers BFA sensitivity to the TGN/EE in Arabidopsis.","lang":"eng"}],"language":[{"iso":"eng"}],"external_id":{"pmid":["29016942"],"isi":["000413220400019"]},"pmid":1,"publisher":"Oxford University Press","article_processing_charge":"No","department":[{"_id":"JiFr"}],"month":"08","volume":58,"author":[{"full_name":"Kitakura, Saeko","last_name":"Kitakura","first_name":"Saeko"},{"full_name":"Adamowski, Maciek","last_name":"Adamowski","first_name":"Maciek","id":"45F536D2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6463-5257"},{"first_name":"Yuki","full_name":"Matsuura, Yuki","last_name":"Matsuura"},{"first_name":"Luca","full_name":"Santuari, Luca","last_name":"Santuari"},{"full_name":"Kouno, Hirotaka","last_name":"Kouno","first_name":"Hirotaka"},{"last_name":"Arima","full_name":"Arima, Kohei","first_name":"Kohei"},{"first_name":"Christian","full_name":"Hardtke, Christian","last_name":"Hardtke"},{"id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jirí","orcid":"0000-0002-8302-7596","full_name":"Friml, Jirí","last_name":"Friml"},{"full_name":"Kakimoto, Tatsuo","last_name":"Kakimoto","first_name":"Tatsuo"},{"first_name":"Hirokazu","last_name":"Tanaka","full_name":"Tanaka, Hirokazu"}],"pubrep_id":"1009","doi":"10.1093/pcp/pcx118","oa":1,"oa_version":"Submitted Version","date_created":"2018-12-11T11:48:34Z","title":"BEN3/BIG2 ARF GEF is involved in brefeldin a-sensitive trafficking at the trans-Golgi network/early endosome in Arabidopsis thaliana","publication_identifier":{"issn":["0032-0781"]},"file":[{"relation":"main_file","date_updated":"2020-07-14T12:48:06Z","file_id":"6333","creator":"dernst","file_name":"2017_PlantCellPhysio_Kitakura.pdf","checksum":"bd3e3a94d55416739cbb19624bb977f8","file_size":1352913,"date_created":"2019-04-17T07:52:34Z","content_type":"application/pdf","access_level":"open_access"}],"publist_id":"6854","publication_status":"published"},{"publication_identifier":{"issn":["2041-1723"]},"oa_version":"Published Version","date_created":"2018-12-11T11:48:34Z","title":"Distance-dependent inhibition facilitates focality of gamma oscillations in the dentate gyrus","publist_id":"6853","publication_status":"published","file":[{"date_created":"2018-12-12T10:15:17Z","file_size":4261832,"content_type":"application/pdf","access_level":"open_access","relation":"main_file","date_updated":"2020-07-14T12:48:07Z","file_id":"5135","creator":"system","file_name":"IST-2017-914-v1+1_s41467-017-00936-3.pdf","checksum":"7e2c7621afd5f802338e92e8619f024d"}],"publisher":"Nature Publishing Group","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"article_processing_charge":"No","pubrep_id":"914","oa":1,"doi":"10.1038/s41467-017-00936-3","project":[{"grant_number":"268548","_id":"25C0F108-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"Nanophysiology of fast-spiking, parvalbumin-expressing GABAergic interneurons"}],"month":"10","department":[{"_id":"PeJo"}],"author":[{"last_name":"Strüber","full_name":"Strüber, Michael","first_name":"Michael"},{"first_name":"Jonas","full_name":"Sauer, Jonas","last_name":"Sauer"},{"orcid":"0000-0001-5001-4804","id":"353C1B58-F248-11E8-B48F-1D18A9856A87","first_name":"Peter M","last_name":"Jonas","full_name":"Jonas, Peter M"},{"last_name":"Bartos","full_name":"Bartos, Marlene","first_name":"Marlene"}],"volume":8,"year":"2017","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["571"],"article_number":"758","intvolume":"         8","date_published":"2017-10-02T00:00:00Z","type":"journal_article","quality_controlled":"1","abstract":[{"text":"Gamma oscillations (30–150 Hz) in neuronal networks are associated with the processing and recall of information. We measured local field potentials in the dentate gyrus of freely moving mice and found that gamma activity occurs in bursts, which are highly heterogeneous in their spatial extensions, ranging from focal to global coherent events. Synaptic communication among perisomatic-inhibitory interneurons (PIIs) is thought to play an important role in the generation of hippocampal gamma patterns. However, how neuronal circuits can generate synchronous oscillations at different spatial scales is unknown. We analyzed paired recordings in dentate gyrus slices and show that synaptic signaling at interneuron-interneuron synapses is distance dependent. Synaptic strength declines whereas the duration of inhibitory signals increases with axonal distance among interconnected PIIs. Using neuronal network modeling, we show that distance-dependent inhibition generates multiple highly synchronous focal gamma bursts allowing the network to process complex inputs in parallel in flexibly organized neuronal centers.","lang":"eng"}],"_id":"800","language":[{"iso":"eng"}],"external_id":{"isi":["000412053100004"]},"has_accepted_license":"1","day":"02","citation":{"chicago":"Strüber, Michael, Jonas Sauer, Peter M Jonas, and Marlene Bartos. “Distance-Dependent Inhibition Facilitates Focality of Gamma Oscillations in the Dentate Gyrus.” <i>Nature Communications</i>. Nature Publishing Group, 2017. <a href=\"https://doi.org/10.1038/s41467-017-00936-3\">https://doi.org/10.1038/s41467-017-00936-3</a>.","ista":"Strüber M, Sauer J, Jonas PM, Bartos M. 2017. Distance-dependent inhibition facilitates focality of gamma oscillations in the dentate gyrus. Nature Communications. 8(1), 758.","ama":"Strüber M, Sauer J, Jonas PM, Bartos M. Distance-dependent inhibition facilitates focality of gamma oscillations in the dentate gyrus. <i>Nature Communications</i>. 2017;8(1). doi:<a href=\"https://doi.org/10.1038/s41467-017-00936-3\">10.1038/s41467-017-00936-3</a>","apa":"Strüber, M., Sauer, J., Jonas, P. M., &#38; Bartos, M. (2017). Distance-dependent inhibition facilitates focality of gamma oscillations in the dentate gyrus. <i>Nature Communications</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/s41467-017-00936-3\">https://doi.org/10.1038/s41467-017-00936-3</a>","short":"M. Strüber, J. Sauer, P.M. Jonas, M. Bartos, Nature Communications 8 (2017).","ieee":"M. Strüber, J. Sauer, P. M. Jonas, and M. Bartos, “Distance-dependent inhibition facilitates focality of gamma oscillations in the dentate gyrus,” <i>Nature Communications</i>, vol. 8, no. 1. Nature Publishing Group, 2017.","mla":"Strüber, Michael, et al. “Distance-Dependent Inhibition Facilitates Focality of Gamma Oscillations in the Dentate Gyrus.” <i>Nature Communications</i>, vol. 8, no. 1, 758, Nature Publishing Group, 2017, doi:<a href=\"https://doi.org/10.1038/s41467-017-00936-3\">10.1038/s41467-017-00936-3</a>."},"status":"public","scopus_import":"1","ec_funded":1,"issue":"1","file_date_updated":"2020-07-14T12:48:07Z","isi":1,"publication":"Nature Communications","date_updated":"2025-07-10T11:54:59Z"},{"acknowledged_ssus":[{"_id":"Bio"}],"isi":1,"publication":"Cell","date_updated":"2025-07-10T11:55:00Z","file_date_updated":"2020-07-14T12:48:08Z","scopus_import":"1","issue":"5","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","page":"956 - 972","status":"public","has_accepted_license":"1","day":"24","citation":{"mla":"Samwer, Matthias, et al. “DNA Cross-Bridging Shapes a Single Nucleus from a Set of Mitotic Chromosomes.” <i>Cell</i>, vol. 170, no. 5, Cell Press, 2017, pp. 956–72, doi:<a href=\"https://doi.org/10.1016/j.cell.2017.07.038\">10.1016/j.cell.2017.07.038</a>.","ieee":"M. Samwer <i>et al.</i>, “DNA cross-bridging shapes a single nucleus from a set of mitotic chromosomes,” <i>Cell</i>, vol. 170, no. 5. Cell Press, pp. 956–972, 2017.","short":"M. Samwer, M. Schneider, R. Hoefler, P.S. Schmalhorst, J. Jude, J. Zuber, D. Gerlic, Cell 170 (2017) 956–972.","apa":"Samwer, M., Schneider, M., Hoefler, R., Schmalhorst, P. S., Jude, J., Zuber, J., &#38; Gerlic, D. (2017). DNA cross-bridging shapes a single nucleus from a set of mitotic chromosomes. <i>Cell</i>. Cell Press. <a href=\"https://doi.org/10.1016/j.cell.2017.07.038\">https://doi.org/10.1016/j.cell.2017.07.038</a>","ama":"Samwer M, Schneider M, Hoefler R, et al. DNA cross-bridging shapes a single nucleus from a set of mitotic chromosomes. <i>Cell</i>. 2017;170(5):956-972. doi:<a href=\"https://doi.org/10.1016/j.cell.2017.07.038\">10.1016/j.cell.2017.07.038</a>","ista":"Samwer M, Schneider M, Hoefler R, Schmalhorst PS, Jude J, Zuber J, Gerlic D. 2017. DNA cross-bridging shapes a single nucleus from a set of mitotic chromosomes. Cell. 170(5), 956–972.","chicago":"Samwer, Matthias, Maximilian Schneider, Rudolf Hoefler, Philipp S Schmalhorst, Julian Jude, Johannes Zuber, and Daniel Gerlic. “DNA Cross-Bridging Shapes a Single Nucleus from a Set of Mitotic Chromosomes.” <i>Cell</i>. Cell Press, 2017. <a href=\"https://doi.org/10.1016/j.cell.2017.07.038\">https://doi.org/10.1016/j.cell.2017.07.038</a>."},"type":"journal_article","quality_controlled":"1","_id":"803","abstract":[{"text":"Eukaryotic cells store their chromosomes in a single nucleus. This is important to maintain genomic integrity, as chromosomes packaged into separate nuclei (micronuclei) are prone to massive DNA damage. During mitosis, higher eukaryotes disassemble their nucleus and release individualized chromosomes for segregation. How numerous chromosomes subsequently reform a single nucleus has remained unclear. Using image-based screening of human cells, we identified barrier-to-autointegration factor (BAF) as a key factor guiding membranes to form a single nucleus. Unexpectedly, nuclear assembly does not require BAF?s association with inner nuclear membrane proteins but instead relies on BAF?s ability to bridge distant DNA sites. Live-cell imaging and in vitro reconstitution showed that BAF enriches around the mitotic chromosome ensemble to induce a densely cross-bridged chromatin layer that is mechanically stiff and limits membranes to the surface. Our study reveals that BAF-mediated changes in chromosome mechanics underlie nuclear assembly with broad implications for proper genome function.","lang":"eng"}],"language":[{"iso":"eng"}],"external_id":{"isi":["000408372400014"]},"date_published":"2017-08-24T00:00:00Z","year":"2017","ddc":["570"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":"       170","department":[{"_id":"CaHe"}],"month":"08","author":[{"first_name":"Matthias","full_name":"Samwer, Matthias","last_name":"Samwer"},{"first_name":"Maximilian","full_name":"Schneider, Maximilian","last_name":"Schneider"},{"first_name":"Rudolf","full_name":"Hoefler, Rudolf","last_name":"Hoefler"},{"last_name":"Schmalhorst","full_name":"Schmalhorst, Philipp S","first_name":"Philipp S","id":"309D50DA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5795-0133"},{"full_name":"Jude, Julian","last_name":"Jude","first_name":"Julian"},{"full_name":"Zuber, Johannes","last_name":"Zuber","first_name":"Johannes"},{"last_name":"Gerlic","full_name":"Gerlic, Daniel","first_name":"Daniel"}],"volume":170,"oa":1,"doi":"10.1016/j.cell.2017.07.038","publisher":"Cell Press","tmp":{"image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode"},"article_processing_charge":"No","file":[{"content_type":"application/pdf","date_created":"2019-01-18T13:45:40Z","file_size":17666637,"access_level":"open_access","relation":"main_file","file_id":"5852","date_updated":"2020-07-14T12:48:08Z","creator":"dernst","checksum":"64897b0c5373f22273f598e4672c60ff","file_name":"2017_Cell_Samwer.pdf"}],"publist_id":"6848","publication_status":"published","oa_version":"Published Version","title":"DNA cross-bridging shapes a single nucleus from a set of mitotic chromosomes","date_created":"2018-12-11T11:48:35Z","publication_identifier":{"issn":["0092-8674"]}},{"publication_status":"published","publist_id":"6847","publication_identifier":{"issn":["1549-9618"]},"arxiv":1,"title":"Overcoming the limitations of the MARTINI force field in simulations of polysaccharides","date_created":"2018-12-11T11:48:35Z","oa_version":"Submitted Version","doi":"10.1021/acs.jctc.7b00374","oa":1,"acknowledgement":"P.S.S. was supported by research fellowship 2811/1-1 from the German Research Foundation (DFG), and M.S. was supported by EMBO Long Term Fellowship ALTF 187-2013 and Grant GC65-32 from the  Interdisciplinary Centre for Mathematical and Computational Modelling (ICM), University of Warsaw, Poland. The authors thank Antje Potthast, Marek Cieplak, Tomasz Włodarski, and Damien Thompson for fruitful discussions and the IST Austria Scientific Computing Facility for support.","author":[{"last_name":"Schmalhorst","full_name":"Schmalhorst, Philipp S","orcid":"0000-0002-5795-0133","first_name":"Philipp S","id":"309D50DA-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Deluweit, Felix","last_name":"Deluweit","first_name":"Felix"},{"first_name":"Roger","full_name":"Scherrers, Roger","last_name":"Scherrers"},{"full_name":"Heisenberg, Carl-Philipp J","last_name":"Heisenberg","first_name":"Carl-Philipp J","id":"39427864-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0912-4566"},{"id":"2F74BCDE-F248-11E8-B48F-1D18A9856A87","first_name":"Mateusz K","full_name":"Sikora, Mateusz K","last_name":"Sikora"}],"volume":13,"month":"10","department":[{"_id":"CaHe"}],"article_processing_charge":"No","corr_author":"1","publisher":"American Chemical Society","external_id":{"arxiv":["1704.03773"],"isi":["000412965700036"]},"_id":"804","abstract":[{"lang":"eng","text":"Polysaccharides (carbohydrates) are key regulators of a large number of cell biological processes. However, precise biochemical or genetic manipulation of these often complex structures is laborious and hampers experimental structure–function studies. Molecular Dynamics (MD) simulations provide a valuable alternative tool to generate and test hypotheses on saccharide function. Yet, currently used MD force fields often overestimate the aggregation propensity of polysaccharides, affecting the usability of those simulations. Here we tested MARTINI, a popular coarse-grained (CG) force field for biological macromolecules, for its ability to accurately represent molecular forces between saccharides. To this end, we calculated a thermodynamic solution property, the second virial coefficient of the osmotic pressure (B22). Comparison with light scattering experiments revealed a nonphysical aggregation of a prototypical polysaccharide in MARTINI, pointing at an imbalance of the nonbonded solute–solute, solute–water, and water–water interactions. This finding also applies to smaller oligosaccharides which were all found to aggregate in simulations even at moderate concentrations, well below their solubility limit. Finally, we explored the influence of the Lennard-Jones (LJ) interaction between saccharide molecules and propose a simple scaling of the LJ interaction strength that makes MARTINI more reliable for the simulation of saccharides."}],"language":[{"iso":"eng"}],"quality_controlled":"1","type":"journal_article","citation":{"chicago":"Schmalhorst, Philipp S, Felix Deluweit, Roger Scherrers, Carl-Philipp J Heisenberg, and Mateusz K Sikora. “Overcoming the Limitations of the MARTINI Force Field in Simulations of Polysaccharides.” <i>Journal of Chemical Theory and Computation</i>. American Chemical Society, 2017. <a href=\"https://doi.org/10.1021/acs.jctc.7b00374\">https://doi.org/10.1021/acs.jctc.7b00374</a>.","ista":"Schmalhorst PS, Deluweit F, Scherrers R, Heisenberg C-PJ, Sikora MK. 2017. Overcoming the limitations of the MARTINI force field in simulations of polysaccharides. Journal of Chemical Theory and Computation. 13(10), 5039–5053.","ama":"Schmalhorst PS, Deluweit F, Scherrers R, Heisenberg C-PJ, Sikora MK. Overcoming the limitations of the MARTINI force field in simulations of polysaccharides. <i>Journal of Chemical Theory and Computation</i>. 2017;13(10):5039-5053. doi:<a href=\"https://doi.org/10.1021/acs.jctc.7b00374\">10.1021/acs.jctc.7b00374</a>","apa":"Schmalhorst, P. S., Deluweit, F., Scherrers, R., Heisenberg, C.-P. J., &#38; Sikora, M. K. (2017). Overcoming the limitations of the MARTINI force field in simulations of polysaccharides. <i>Journal of Chemical Theory and Computation</i>. American Chemical Society. <a href=\"https://doi.org/10.1021/acs.jctc.7b00374\">https://doi.org/10.1021/acs.jctc.7b00374</a>","short":"P.S. Schmalhorst, F. Deluweit, R. Scherrers, C.-P.J. Heisenberg, M.K. Sikora, Journal of Chemical Theory and Computation 13 (2017) 5039–5053.","ieee":"P. S. Schmalhorst, F. Deluweit, R. Scherrers, C.-P. J. Heisenberg, and M. K. Sikora, “Overcoming the limitations of the MARTINI force field in simulations of polysaccharides,” <i>Journal of Chemical Theory and Computation</i>, vol. 13, no. 10. American Chemical Society, pp. 5039–5053, 2017.","mla":"Schmalhorst, Philipp S., et al. “Overcoming the Limitations of the MARTINI Force Field in Simulations of Polysaccharides.” <i>Journal of Chemical Theory and Computation</i>, vol. 13, no. 10, American Chemical Society, 2017, pp. 5039–53, doi:<a href=\"https://doi.org/10.1021/acs.jctc.7b00374\">10.1021/acs.jctc.7b00374</a>."},"day":"10","intvolume":"        13","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2017","date_published":"2017-10-10T00:00:00Z","main_file_link":[{"url":"https://arxiv.org/abs/1704.03773","open_access":"1"}],"publication":"Journal of Chemical Theory and Computation","date_updated":"2025-06-04T09:49:02Z","isi":1,"acknowledged_ssus":[{"_id":"ScienComp"}],"page":"5039 - 5053","status":"public","issue":"10","scopus_import":"1"},{"_id":"805","abstract":[{"text":"During corticogenesis, distinct classes of neurons are born from progenitor cells located in the ventricular and subventricular zones, from where they migrate towards the pial surface to assemble into highly organized layer-specific circuits. However, the precise and coordinated transcriptional network activity defining neuronal identity is still not understood. Here, we show that genetic depletion of the basic helix-loop-helix (bHLH) transcription factor E2A splice variant E47 increased the number of Tbr1-positive deep layer and Satb2-positive upper layer neurons at E14.5, while depletion of the alternatively spliced E12 variant did not affect layer-specific neurogenesis. While ChIP-Seq identified a big overlap for E12- and E47-specific binding sites in embryonic NSCs, including sites at the cyclin-dependent kinase inhibitor (CDKI) Cdkn1c gene locus, RNA-Seq revealed a unique transcriptional regulation by each splice variant. E47 activated the expression of the CDKI Cdkn1c through binding to a distal enhancer. Finally, overexpression of E47 in embryonic NSCs in vitro impaired neurite outgrowth and E47 overexpression in vivo by in utero electroporation disturbed proper layer-specific neurogenesis and upregulated p57(KIP2) expression. Overall, this study identified E2A target genes in embryonic NSCs and demonstrates that E47 regulates neuronal differentiation via p57(KIP2).","lang":"eng"}],"language":[{"iso":"eng"}],"external_id":{"isi":["000414025600007"]},"type":"journal_article","publist_id":"6846","quality_controlled":"1","publication_status":"published","citation":{"chicago":"Pfurr, Sabrina, Yu Chu, Christian Bohrer, Franziska Greulich, Robert J Beattie, Könül Mammadzada, Miriam Hils, et al. “The E2A Splice Variant E47 Regulates the Differentiation of Projection Neurons via P57(KIP2) during Cortical Development.” <i>Development</i>. Company of Biologists, 2017. <a href=\"https://doi.org/10.1242/dev.145698\">https://doi.org/10.1242/dev.145698</a>.","ama":"Pfurr S, Chu Y, Bohrer C, et al. The E2A splice variant E47 regulates the differentiation of projection neurons via p57(KIP2) during cortical development. <i>Development</i>. 2017;144:3917-3931. doi:<a href=\"https://doi.org/10.1242/dev.145698\">10.1242/dev.145698</a>","ista":"Pfurr S, Chu Y, Bohrer C, Greulich F, Beattie RJ, Mammadzada K, Hils M, Arnold S, Taylor V, Schachtrup K, Uhlenhaut NH, Schachtrup C. 2017. The E2A splice variant E47 regulates the differentiation of projection neurons via p57(KIP2) during cortical development. Development. 144, 3917–3931.","apa":"Pfurr, S., Chu, Y., Bohrer, C., Greulich, F., Beattie, R. J., Mammadzada, K., … Schachtrup, C. (2017). The E2A splice variant E47 regulates the differentiation of projection neurons via p57(KIP2) during cortical development. <i>Development</i>. Company of Biologists. <a href=\"https://doi.org/10.1242/dev.145698\">https://doi.org/10.1242/dev.145698</a>","mla":"Pfurr, Sabrina, et al. “The E2A Splice Variant E47 Regulates the Differentiation of Projection Neurons via P57(KIP2) during Cortical Development.” <i>Development</i>, vol. 144, Company of Biologists, 2017, pp. 3917–31, doi:<a href=\"https://doi.org/10.1242/dev.145698\">10.1242/dev.145698</a>.","ieee":"S. Pfurr <i>et al.</i>, “The E2A splice variant E47 regulates the differentiation of projection neurons via p57(KIP2) during cortical development,” <i>Development</i>, vol. 144. Company of Biologists, pp. 3917–3931, 2017.","short":"S. Pfurr, Y. Chu, C. Bohrer, F. Greulich, R.J. Beattie, K. Mammadzada, M. Hils, S. Arnold, V. Taylor, K. Schachtrup, N.H. Uhlenhaut, C. Schachtrup, Development 144 (2017) 3917–3931."},"day":"31","intvolume":"       144","year":"2017","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","date_published":"2017-10-31T00:00:00Z","title":"The E2A splice variant E47 regulates the differentiation of projection neurons via p57(KIP2) during cortical development","date_created":"2018-12-11T11:48:36Z","oa_version":"None","doi":"10.1242/dev.145698","date_updated":"2023-09-26T16:20:09Z","publication":"Development","author":[{"first_name":"Sabrina","full_name":"Pfurr, Sabrina","last_name":"Pfurr"},{"first_name":"Yu","full_name":"Chu, Yu","last_name":"Chu"},{"first_name":"Christian","full_name":"Bohrer, Christian","last_name":"Bohrer"},{"last_name":"Greulich","full_name":"Greulich, Franziska","first_name":"Franziska"},{"last_name":"Beattie","full_name":"Beattie, Robert J","id":"2E26DF60-F248-11E8-B48F-1D18A9856A87","first_name":"Robert J","orcid":"0000-0002-8483-8753"},{"first_name":"Könül","last_name":"Mammadzada","full_name":"Mammadzada, Könül"},{"full_name":"Hils, Miriam","last_name":"Hils","first_name":"Miriam"},{"full_name":"Arnold, Sebastian","last_name":"Arnold","first_name":"Sebastian"},{"first_name":"Verdon","last_name":"Taylor","full_name":"Taylor, Verdon"},{"first_name":"Kristina","full_name":"Schachtrup, Kristina","last_name":"Schachtrup"},{"last_name":"Uhlenhaut","full_name":"Uhlenhaut, N Henriette","first_name":"N Henriette"},{"first_name":"Christian","full_name":"Schachtrup, Christian","last_name":"Schachtrup"}],"volume":144,"month":"10","isi":1,"department":[{"_id":"SiHi"}],"article_processing_charge":"No","publisher":"Company of Biologists","status":"public","page":"3917 - 3931","scopus_import":"1"},{"isi":1,"date_updated":"2025-07-10T11:55:08Z","publication":"PNAS","scopus_import":"1","issue":"40","ec_funded":1,"status":"public","page":"10666 - 10671","day":"03","citation":{"apa":"de Vos, M., Zagórski, M. P., Mcnally, A., &#38; Bollenbach, M. T. (2017). Interaction networks, ecological stability, and collective antibiotic tolerance in polymicrobial infections. <i>PNAS</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.1713372114\">https://doi.org/10.1073/pnas.1713372114</a>","mla":"de Vos, Marjon, et al. “Interaction Networks, Ecological Stability, and Collective Antibiotic Tolerance in Polymicrobial Infections.” <i>PNAS</i>, vol. 114, no. 40, National Academy of Sciences, 2017, pp. 10666–71, doi:<a href=\"https://doi.org/10.1073/pnas.1713372114\">10.1073/pnas.1713372114</a>.","short":"M. de Vos, M.P. Zagórski, A. Mcnally, M.T. Bollenbach, PNAS 114 (2017) 10666–10671.","ieee":"M. de Vos, M. P. Zagórski, A. Mcnally, and M. T. Bollenbach, “Interaction networks, ecological stability, and collective antibiotic tolerance in polymicrobial infections,” <i>PNAS</i>, vol. 114, no. 40. National Academy of Sciences, pp. 10666–10671, 2017.","chicago":"Vos, Marjon de, Marcin P Zagórski, Alan Mcnally, and Mark Tobias Bollenbach. “Interaction Networks, Ecological Stability, and Collective Antibiotic Tolerance in Polymicrobial Infections.” <i>PNAS</i>. National Academy of Sciences, 2017. <a href=\"https://doi.org/10.1073/pnas.1713372114\">https://doi.org/10.1073/pnas.1713372114</a>.","ama":"de Vos M, Zagórski MP, Mcnally A, Bollenbach MT. Interaction networks, ecological stability, and collective antibiotic tolerance in polymicrobial infections. <i>PNAS</i>. 2017;114(40):10666-10671. doi:<a href=\"https://doi.org/10.1073/pnas.1713372114\">10.1073/pnas.1713372114</a>","ista":"de Vos M, Zagórski MP, Mcnally A, Bollenbach MT. 2017. Interaction networks, ecological stability, and collective antibiotic tolerance in polymicrobial infections. PNAS. 114(40), 10666–10671."},"quality_controlled":"1","type":"journal_article","external_id":{"isi":["000412130500061"],"pmid":["28923953"]},"_id":"822","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"Polymicrobial infections constitute small ecosystems that accommodate several bacterial species. Commonly, these bacteria are investigated in isolation. However, it is unknown to what extent the isolates interact and whether their interactions alter bacterial growth and ecosystem resilience in the presence and absence of antibiotics. We quantified the complete ecological interaction network for 72 bacterial isolates collected from 23 individuals diagnosed with polymicrobial urinary tract infections and found that most interactions cluster based on evolutionary relatedness. Statistical network analysis revealed that competitive and cooperative reciprocal interactions are enriched in the global network, while cooperative interactions are depleted in the individual host community networks. A population dynamics model parameterized by our measurements suggests that interactions restrict community stability, explaining the observed species diversity of these communities. We further show that the clinical isolates frequently protect each other from clinically relevant antibiotics. Together, these results highlight that ecological interactions are crucial for the growth and survival of bacteria in polymicrobial infection communities and affect their assembly and resilience. "}],"main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5635929/","open_access":"1"}],"date_published":"2017-10-03T00:00:00Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2017","intvolume":"       114","department":[{"_id":"ToBo"}],"month":"10","project":[{"_id":"25E83C2C-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"303507","name":"Optimality principles in responses to antibiotics"},{"call_identifier":"FWF","_id":"25E9AF9E-B435-11E9-9278-68D0E5697425","grant_number":"P27201-B22","name":"Revealing the mechanisms underlying drug interactions"}],"volume":114,"author":[{"first_name":"Marjon","id":"3111FFAC-F248-11E8-B48F-1D18A9856A87","last_name":"De Vos","full_name":"De Vos, Marjon"},{"orcid":"0000-0001-7896-7762","first_name":"Marcin P","id":"343DA0DC-F248-11E8-B48F-1D18A9856A87","last_name":"Zagórski","full_name":"Zagórski, Marcin P"},{"full_name":"Mcnally, Alan","last_name":"Mcnally","first_name":"Alan"},{"full_name":"Bollenbach, Mark Tobias","last_name":"Bollenbach","id":"3E6DB97A-F248-11E8-B48F-1D18A9856A87","first_name":"Mark Tobias","orcid":"0000-0003-4398-476X"}],"doi":"10.1073/pnas.1713372114","oa":1,"pmid":1,"publisher":"National Academy of Sciences","article_processing_charge":"No","corr_author":"1","publication_status":"published","publist_id":"6827","oa_version":"Submitted Version","title":"Interaction networks, ecological stability, and collective antibiotic tolerance in polymicrobial infections","date_created":"2018-12-11T11:48:41Z","publication_identifier":{"issn":["0027-8424"]}},{"article_processing_charge":"No","publisher":"IOP Publishing","author":[{"first_name":"Simona","last_name":"Colabrese","full_name":"Colabrese, Simona"},{"last_name":"De Martino","full_name":"De Martino, Daniele","id":"3FF5848A-F248-11E8-B48F-1D18A9856A87","first_name":"Daniele","orcid":"0000-0002-5214-4706"},{"first_name":"Luca","full_name":"Leuzzi, Luca","last_name":"Leuzzi"},{"first_name":"Enzo","last_name":"Marinari","full_name":"Marinari, Enzo"}],"volume":2017,"project":[{"name":"International IST Postdoc Fellowship Programme","call_identifier":"FP7","_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734"}],"month":"09","department":[{"_id":"GaTk"}],"oa":1,"doi":"10.1088/1742-5468/aa85c3","title":"Phase transitions in integer linear problems","date_created":"2018-12-11T11:48:41Z","oa_version":"Submitted Version","publication_identifier":{"issn":["1742-5468"]},"arxiv":1,"publist_id":"6826","publication_status":"published","ec_funded":1,"issue":"9","scopus_import":"1","status":"public","date_updated":"2025-06-04T08:08:31Z","publication":" Journal of Statistical Mechanics: Theory and Experiment","isi":1,"date_published":"2017-09-26T00:00:00Z","main_file_link":[{"url":"https://arxiv.org/abs/1705.06303","open_access":"1"}],"article_number":"093404","intvolume":"      2017","year":"2017","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"mla":"Colabrese, Simona, et al. “Phase Transitions in Integer Linear Problems.” <i> Journal of Statistical Mechanics: Theory and Experiment</i>, vol. 2017, no. 9, 093404, IOP Publishing, 2017, doi:<a href=\"https://doi.org/10.1088/1742-5468/aa85c3\">10.1088/1742-5468/aa85c3</a>.","short":"S. Colabrese, D. De Martino, L. Leuzzi, E. Marinari,  Journal of Statistical Mechanics: Theory and Experiment 2017 (2017).","ieee":"S. Colabrese, D. De Martino, L. Leuzzi, and E. Marinari, “Phase transitions in integer linear problems,” <i> Journal of Statistical Mechanics: Theory and Experiment</i>, vol. 2017, no. 9. IOP Publishing, 2017.","apa":"Colabrese, S., De Martino, D., Leuzzi, L., &#38; Marinari, E. (2017). Phase transitions in integer linear problems. <i> Journal of Statistical Mechanics: Theory and Experiment</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/1742-5468/aa85c3\">https://doi.org/10.1088/1742-5468/aa85c3</a>","ama":"Colabrese S, De Martino D, Leuzzi L, Marinari E. Phase transitions in integer linear problems. <i> Journal of Statistical Mechanics: Theory and Experiment</i>. 2017;2017(9). doi:<a href=\"https://doi.org/10.1088/1742-5468/aa85c3\">10.1088/1742-5468/aa85c3</a>","ista":"Colabrese S, De Martino D, Leuzzi L, Marinari E. 2017. Phase transitions in integer linear problems.  Journal of Statistical Mechanics: Theory and Experiment. 2017(9), 093404.","chicago":"Colabrese, Simona, Daniele De Martino, Luca Leuzzi, and Enzo Marinari. “Phase Transitions in Integer Linear Problems.” <i> Journal of Statistical Mechanics: Theory and Experiment</i>. IOP Publishing, 2017. <a href=\"https://doi.org/10.1088/1742-5468/aa85c3\">https://doi.org/10.1088/1742-5468/aa85c3</a>."},"day":"26","_id":"823","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"The resolution of a linear system with positive integer variables is a basic yet difficult computational problem with many applications. We consider sparse uncorrelated random systems parametrised by the density c and the ratio α=N/M between number of variables N and number of constraints M. By means of ensemble calculations we show that the space of feasible solutions endows a Van-Der-Waals phase diagram in the plane (c, α). We give numerical evidence that the associated computational problems become more difficult across the critical point and in particular in the coexistence region."}],"external_id":{"arxiv":["1705.06303"],"isi":["000411842900001"]},"type":"journal_article","quality_controlled":"1"},{"quality_controlled":"1","type":"journal_article","external_id":{"arxiv":["1703.10484"],"isi":["000408326300001"]},"abstract":[{"text":"In shear flows at transitional Reynolds numbers, localized patches of turbulence, known as puffs, coexist with the laminar flow. Recently, Avila et al. (Phys. Rev. Lett., vol. 110, 2013, 224502) discovered two spatially localized relative periodic solutions for pipe flow, which appeared in a saddle-node bifurcation at low Reynolds number. Combining slicing methods for continuous symmetry reduction with Poincaré sections for the first time in a shear flow setting, we compute and visualize the unstable manifold of the lower-branch solution and show that it extends towards the neighbourhood of the upper-branch solution. Surprisingly, this connection even persists far above the bifurcation point and appears to mediate the first stage of the puff generation: amplification of streamwise localized fluctuations. When the state-space trajectories on the unstable manifold reach the vicinity of the upper branch, corresponding fluctuations expand in space and eventually take the usual shape of a puff.","lang":"eng"}],"_id":"824","language":[{"iso":"eng"}],"citation":{"chicago":"Budanur, Nazmi B, and Björn Hof. “Heteroclinic Path to Spatially Localized Chaos in Pipe Flow.” <i>Journal of Fluid Mechanics</i>. Cambridge University Press, 2017. <a href=\"https://doi.org/10.1017/jfm.2017.516\">https://doi.org/10.1017/jfm.2017.516</a>.","ista":"Budanur NB, Hof B. 2017. Heteroclinic path to spatially localized chaos in pipe flow. Journal of Fluid Mechanics. 827, R1.","ama":"Budanur NB, Hof B. Heteroclinic path to spatially localized chaos in pipe flow. <i>Journal of Fluid Mechanics</i>. 2017;827. doi:<a href=\"https://doi.org/10.1017/jfm.2017.516\">10.1017/jfm.2017.516</a>","apa":"Budanur, N. B., &#38; Hof, B. (2017). Heteroclinic path to spatially localized chaos in pipe flow. <i>Journal of Fluid Mechanics</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/jfm.2017.516\">https://doi.org/10.1017/jfm.2017.516</a>","ieee":"N. B. Budanur and B. Hof, “Heteroclinic path to spatially localized chaos in pipe flow,” <i>Journal of Fluid Mechanics</i>, vol. 827. Cambridge University Press, 2017.","short":"N.B. Budanur, B. Hof, Journal of Fluid Mechanics 827 (2017).","mla":"Budanur, Nazmi B., and Björn Hof. “Heteroclinic Path to Spatially Localized Chaos in Pipe Flow.” <i>Journal of Fluid Mechanics</i>, vol. 827, R1, Cambridge University Press, 2017, doi:<a href=\"https://doi.org/10.1017/jfm.2017.516\">10.1017/jfm.2017.516</a>."},"day":"18","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2017","intvolume":"       827","article_number":"R1","main_file_link":[{"url":"https://arxiv.org/abs/1703.10484","open_access":"1"}],"date_published":"2017-08-18T00:00:00Z","isi":1,"date_updated":"2025-06-04T09:49:26Z","publication":"Journal of Fluid Mechanics","status":"public","scopus_import":"1","publication_status":"published","publist_id":"6824","arxiv":1,"publication_identifier":{"issn":["0022-1120"]},"oa_version":"Submitted Version","date_created":"2018-12-11T11:48:42Z","title":"Heteroclinic path to spatially localized chaos in pipe flow","oa":1,"doi":"10.1017/jfm.2017.516","department":[{"_id":"BjHo"}],"month":"08","author":[{"full_name":"Budanur, Nazmi B","last_name":"Budanur","orcid":"0000-0003-0423-5010","first_name":"Nazmi B","id":"3EA1010E-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0003-2057-2754","first_name":"Björn","id":"3A374330-F248-11E8-B48F-1D18A9856A87","full_name":"Hof, Björn","last_name":"Hof"}],"volume":827,"publisher":"Cambridge University Press","article_processing_charge":"No"},{"intvolume":"     10424","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2017","date_published":"2017-07-28T00:00:00Z","main_file_link":[{"url":"https://arxiv.org/abs/1705.02045","open_access":"1"}],"external_id":{"arxiv":["1705.02045"],"isi":["000432085900032"]},"_id":"833","language":[{"iso":"eng"}],"abstract":[{"text":"We present an efficient algorithm to compute Euler characteristic curves of gray scale images of arbitrary dimension. In various applications the Euler characteristic curve is used as a descriptor of an image. Our algorithm is the first streaming algorithm for Euler characteristic curves. The usage of streaming removes the necessity to store the entire image in RAM. Experiments show that our implementation handles terabyte scale images on commodity hardware. Due to lock-free parallelism, it scales well with the number of processor cores. Additionally, we put the concept of the Euler characteristic curve in the wider context of computational topology. In particular, we explain the connection with persistence diagrams.","lang":"eng"}],"quality_controlled":"1","type":"conference","day":"28","citation":{"ieee":"T. Heiss and H. Wagner, “Streaming algorithm for Euler characteristic curves of multidimensional images,” presented at the CAIP: Computer Analysis of Images and Patterns, Ystad, Sweden, 2017, vol. 10424, pp. 397–409.","short":"T. Heiss, H. Wagner, in:, M. Felsberg, A. Heyden, N. Krüger (Eds.), Springer, 2017, pp. 397–409.","mla":"Heiss, Teresa, and Hubert Wagner. <i>Streaming Algorithm for Euler Characteristic Curves of Multidimensional Images</i>. Edited by Michael Felsberg et al., vol. 10424, Springer, 2017, pp. 397–409, doi:<a href=\"https://doi.org/10.1007/978-3-319-64689-3_32\">10.1007/978-3-319-64689-3_32</a>.","apa":"Heiss, T., &#38; Wagner, H. (2017). Streaming algorithm for Euler characteristic curves of multidimensional images. In M. Felsberg, A. Heyden, &#38; N. Krüger (Eds.) (Vol. 10424, pp. 397–409). Presented at the CAIP: Computer Analysis of Images and Patterns, Ystad, Sweden: Springer. <a href=\"https://doi.org/10.1007/978-3-319-64689-3_32\">https://doi.org/10.1007/978-3-319-64689-3_32</a>","ista":"Heiss T, Wagner H. 2017. Streaming algorithm for Euler characteristic curves of multidimensional images. CAIP: Computer Analysis of Images and Patterns, LNCS, vol. 10424, 397–409.","ama":"Heiss T, Wagner H. Streaming algorithm for Euler characteristic curves of multidimensional images. In: Felsberg M, Heyden A, Krüger N, eds. Vol 10424. Springer; 2017:397-409. doi:<a href=\"https://doi.org/10.1007/978-3-319-64689-3_32\">10.1007/978-3-319-64689-3_32</a>","chicago":"Heiss, Teresa, and Hubert Wagner. “Streaming Algorithm for Euler Characteristic Curves of Multidimensional Images.” edited by Michael Felsberg, Anders Heyden, and Norbert Krüger, 10424:397–409. Springer, 2017. <a href=\"https://doi.org/10.1007/978-3-319-64689-3_32\">https://doi.org/10.1007/978-3-319-64689-3_32</a>."},"page":"397 - 409","status":"public","scopus_import":"1","editor":[{"full_name":"Felsberg, Michael","last_name":"Felsberg","first_name":"Michael"},{"first_name":"Anders","last_name":"Heyden","full_name":"Heyden, Anders"},{"first_name":"Norbert","full_name":"Krüger, Norbert","last_name":"Krüger"}],"date_updated":"2025-06-04T09:54:22Z","isi":1,"publication_identifier":{"issn":["0302-9743"]},"arxiv":1,"alternative_title":["LNCS"],"title":"Streaming algorithm for Euler characteristic curves of multidimensional images","date_created":"2018-12-11T11:48:45Z","oa_version":"Submitted Version","publication_status":"published","conference":{"location":"Ystad, Sweden","end_date":"2017-08-24","start_date":"2017-08-22","name":"CAIP: Computer Analysis of Images and Patterns"},"publist_id":"6815","article_processing_charge":"No","corr_author":"1","publisher":"Springer","oa":1,"doi":"10.1007/978-3-319-64689-3_32","volume":10424,"author":[{"orcid":"0000-0002-1780-2689","id":"4879BB4E-F248-11E8-B48F-1D18A9856A87","first_name":"Teresa","full_name":"Heiss, Teresa","last_name":"Heiss"},{"full_name":"Wagner, Hubert","last_name":"Wagner","id":"379CA8B8-F248-11E8-B48F-1D18A9856A87","first_name":"Hubert"}],"month":"07","department":[{"_id":"HeEd"}]},{"publication_identifier":{"issn":["2469-9950"]},"arxiv":1,"oa_version":"Submitted Version","title":"Thouless energy and multifractality across the many-body localization transition","date_created":"2018-12-11T11:48:45Z","publist_id":"6814","publication_status":"published","publisher":"American Physical Society","article_processing_charge":"No","acknowledgement":"We   acknowledge   useful   discussions with V. Kravtsov, T. Grover, and R. Vasseur.  M.S. was supported by Gordon and Betty Moore Foundation’s EPiQS Initiative through Grant GBMF4307.  M.S. and D.A.  acknowledge  hospitality  of  KITP,  where  parts  of this work were completed (supported in part by the National Science Foundation under Grant No. NSF PHY11-25915)","oa":1,"doi":"10.1103/PhysRevB.96.104201","month":"09","department":[{"_id":"MaSe"}],"volume":96,"author":[{"full_name":"Serbyn, Maksym","last_name":"Serbyn","orcid":"0000-0002-2399-5827","first_name":"Maksym","id":"47809E7E-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Papic","full_name":"Zlatko, Papic","last_name":"Zlatko"},{"full_name":"Abanin, Dmitry","last_name":"Abanin","first_name":"Dmitry"}],"year":"2017","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_number":"104201","intvolume":"        96","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1610.02389"}],"date_published":"2017-09-06T00:00:00Z","type":"journal_article","quality_controlled":"1","language":[{"iso":"eng"}],"_id":"834","abstract":[{"text":"Thermal and many-body localized phases are separated by a dynamical phase transition of a new kind. We analyze the distribution of off-diagonal matrix elements of local operators across this transition in two different models of disordered spin chains. We show that the behavior of matrix elements can be used to characterize the breakdown of thermalization and to extract the many-body Thouless energy. We find that upon increasing the disorder strength the system enters a critical region around the many-body localization transition. The properties of the system in this region are: (i) the Thouless energy becomes smaller than the level spacing, (ii) the matrix elements show critical dependence on the energy difference, and (iii) the matrix elements, viewed as amplitudes of a fictitious wave function, exhibit strong multifractality. This critical region decreases with the system size, which we interpret as evidence for a diverging correlation length at the many-body localization transition. Our findings show that the correlation length becomes larger than the accessible system sizes in a broad range of disorder strength values and shed light on the critical behavior near the many-body localization transition.","lang":"eng"}],"external_id":{"isi":["000409429300004"],"arxiv":["1610.02389"]},"day":"06","citation":{"ista":"Serbyn M, Zlatko P, Abanin D. 2017. Thouless energy and multifractality across the many-body localization transition. Physical Review B - Condensed Matter and Materials Physics. 96(10), 104201.","ama":"Serbyn M, Zlatko P, Abanin D. Thouless energy and multifractality across the many-body localization transition. <i>Physical Review B - Condensed Matter and Materials Physics</i>. 2017;96(10). doi:<a href=\"https://doi.org/10.1103/PhysRevB.96.104201\">10.1103/PhysRevB.96.104201</a>","chicago":"Serbyn, Maksym, Papic Zlatko, and Dmitry Abanin. “Thouless Energy and Multifractality across the Many-Body Localization Transition.” <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society, 2017. <a href=\"https://doi.org/10.1103/PhysRevB.96.104201\">https://doi.org/10.1103/PhysRevB.96.104201</a>.","ieee":"M. Serbyn, P. Zlatko, and D. Abanin, “Thouless energy and multifractality across the many-body localization transition,” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 96, no. 10. American Physical Society, 2017.","short":"M. Serbyn, P. Zlatko, D. Abanin, Physical Review B - Condensed Matter and Materials Physics 96 (2017).","mla":"Serbyn, Maksym, et al. “Thouless Energy and Multifractality across the Many-Body Localization Transition.” <i>Physical Review B - Condensed Matter and Materials Physics</i>, vol. 96, no. 10, 104201, American Physical Society, 2017, doi:<a href=\"https://doi.org/10.1103/PhysRevB.96.104201\">10.1103/PhysRevB.96.104201</a>.","apa":"Serbyn, M., Zlatko, P., &#38; Abanin, D. (2017). Thouless energy and multifractality across the many-body localization transition. <i>Physical Review B - Condensed Matter and Materials Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevB.96.104201\">https://doi.org/10.1103/PhysRevB.96.104201</a>"},"status":"public","scopus_import":"1","issue":"10","isi":1,"publication":"Physical Review B - Condensed Matter and Materials Physics","date_updated":"2025-06-04T09:55:57Z"},{"article_processing_charge":"No","publisher":"Springer","doi":"10.1007/978-3-319-56932-1_8","volume":198,"author":[{"full_name":"Ethier, Marc","last_name":"Ethier","first_name":"Marc"},{"orcid":"0000-0002-3536-9866","id":"4483EF78-F248-11E8-B48F-1D18A9856A87","first_name":"Grzegorz","last_name":"Jablonski","full_name":"Jablonski, Grzegorz"},{"first_name":"Marian","last_name":"Mrozek","full_name":"Mrozek, Marian"}],"project":[{"name":"Topological Complex Systems","_id":"255D761E-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"318493"}],"month":"07","department":[{"_id":"HeEd"}],"publication_identifier":{"isbn":["978-331956930-7"]},"title":"Finding eigenvalues of self-maps with the Kronecker canonical form","date_created":"2018-12-11T11:48:46Z","alternative_title":["PROMS"],"oa_version":"None","publist_id":"6812","publication_status":"published","conference":{"location":"Kalamata, Greece","end_date":"2015-07-23","start_date":"2015-07-20","name":"ACA: Applications of Computer Algebra"},"status":"public","page":"119 - 136","ec_funded":1,"scopus_import":"1","publication":"Special Sessions in Applications of Computer Algebra","date_updated":"2025-04-15T08:37:55Z","isi":1,"intvolume":"       198","year":"2017","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","date_published":"2017-07-27T00:00:00Z","language":[{"iso":"eng"}],"_id":"836","abstract":[{"lang":"eng","text":"Recent research has examined how to study the topological features of a continuous self-map by means of the persistence of the eigenspaces, for given eigenvalues, of the endomorphism induced in homology over a field. This raised the question of how to select dynamically significant eigenvalues. The present paper aims to answer this question, giving an algorithm that computes the persistence of eigenspaces for every eigenvalue simultaneously, also expressing said eigenspaces as direct sums of “finite” and “singular” subspaces."}],"external_id":{"isi":["000434088200008"]},"type":"conference","quality_controlled":"1","citation":{"ista":"Ethier M, Jablonski G, Mrozek M. 2017. Finding eigenvalues of self-maps with the Kronecker canonical form. Special Sessions in Applications of Computer Algebra. ACA: Applications of Computer Algebra, PROMS, vol. 198, 119–136.","ama":"Ethier M, Jablonski G, Mrozek M. Finding eigenvalues of self-maps with the Kronecker canonical form. In: <i>Special Sessions in Applications of Computer Algebra</i>. Vol 198. Springer; 2017:119-136. doi:<a href=\"https://doi.org/10.1007/978-3-319-56932-1_8\">10.1007/978-3-319-56932-1_8</a>","chicago":"Ethier, Marc, Grzegorz Jablonski, and Marian Mrozek. “Finding Eigenvalues of Self-Maps with the Kronecker Canonical Form.” In <i>Special Sessions in Applications of Computer Algebra</i>, 198:119–36. Springer, 2017. <a href=\"https://doi.org/10.1007/978-3-319-56932-1_8\">https://doi.org/10.1007/978-3-319-56932-1_8</a>.","short":"M. Ethier, G. Jablonski, M. Mrozek, in:, Special Sessions in Applications of Computer Algebra, Springer, 2017, pp. 119–136.","ieee":"M. Ethier, G. Jablonski, and M. Mrozek, “Finding eigenvalues of self-maps with the Kronecker canonical form,” in <i>Special Sessions in Applications of Computer Algebra</i>, Kalamata, Greece, 2017, vol. 198, pp. 119–136.","mla":"Ethier, Marc, et al. “Finding Eigenvalues of Self-Maps with the Kronecker Canonical Form.” <i>Special Sessions in Applications of Computer Algebra</i>, vol. 198, Springer, 2017, pp. 119–36, doi:<a href=\"https://doi.org/10.1007/978-3-319-56932-1_8\">10.1007/978-3-319-56932-1_8</a>.","apa":"Ethier, M., Jablonski, G., &#38; Mrozek, M. (2017). Finding eigenvalues of self-maps with the Kronecker canonical form. In <i>Special Sessions in Applications of Computer Algebra</i> (Vol. 198, pp. 119–136). Kalamata, Greece: Springer. <a href=\"https://doi.org/10.1007/978-3-319-56932-1_8\">https://doi.org/10.1007/978-3-319-56932-1_8</a>"},"day":"27"},{"doi":"10.1201/9781315119601","department":[{"_id":"HeEd"}],"month":"11","author":[{"full_name":"Edelsbrunner, Herbert","last_name":"Edelsbrunner","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","first_name":"Herbert","orcid":"0000-0002-9823-6833"},{"last_name":"Koehl","full_name":"Koehl, Patrice","first_name":"Patrice"}],"date_updated":"2023-10-16T11:15:22Z","publication":"Handbook of Discrete and Computational Geometry, Third Edition","page":"1709 - 1735","status":"public","publisher":"Taylor & Francis","article_processing_charge":"No","scopus_import":"1","editor":[{"last_name":"Toth","full_name":"Toth, Csaba","first_name":"Csaba"},{"last_name":"O'Rourke","full_name":"O'Rourke, Joseph","first_name":"Joseph"},{"last_name":"Goodman","full_name":"Goodman, Jacob","first_name":"Jacob"}],"series_title":"Handbook of Discrete and Computational Geometry","publication_status":"published","quality_controlled":"1","type":"book_chapter","publist_id":"7970","language":[{"iso":"eng"}],"_id":"84","abstract":[{"lang":"eng","text":"The advent of high-throughput technologies and the concurrent advances in information sciences have led to a data revolution in biology. This revolution is most significant in molecular biology, with an increase in the number and scale of the “omics” projects over the last decade. Genomics projects, for example, have produced impressive advances in our knowledge of the information concealed into genomes, from the many genes that encode for the proteins that are responsible for most if not all cellular functions, to the noncoding regions that are now known to provide regulatory functions. Proteomics initiatives help to decipher the role of post-translation modifications on the protein structures and provide maps of protein-protein interactions, while functional genomics is the field that attempts to make use of the data produced by these projects to understand protein functions. The biggest challenge today is to assimilate the wealth of information provided by these initiatives into a conceptual framework that will help us decipher life. For example, the current views of the relationship between protein structure and function remain fragmented. We know of their sequences, more and more about their structures, we have information on their biological activities, but we have difficulties connecting this dotted line into an informed whole. We lack the experimental and computational tools for directly studying protein structure, function, and dynamics at the molecular and supra-molecular levels. In this chapter, we review some of the current developments in building the computational tools that are needed, focusing on the role that geometry and topology play in these efforts. One of our goals is to raise the general awareness about the importance of geometric methods in elucidating the mysterious foundations of our very existence. Another goal is the broadening of what we consider a geometric algorithm. There is plenty of valuable no-man’s-land between combinatorial and numerical algorithms, and it seems opportune to explore this land with a computational-geometric frame of mind."}],"day":"09","citation":{"ieee":"H. Edelsbrunner and P. Koehl, “Computational topology for structural molecular biology,” in <i>Handbook of Discrete and Computational Geometry, Third Edition</i>, C. Toth, J. O’Rourke, and J. Goodman, Eds. Taylor &#38; Francis, 2017, pp. 1709–1735.","short":"H. Edelsbrunner, P. Koehl, in:, C. Toth, J. O’Rourke, J. Goodman (Eds.), Handbook of Discrete and Computational Geometry, Third Edition, Taylor &#38; Francis, 2017, pp. 1709–1735.","mla":"Edelsbrunner, Herbert, and Patrice Koehl. “Computational Topology for Structural Molecular Biology.” <i>Handbook of Discrete and Computational Geometry, Third Edition</i>, edited by Csaba Toth et al., Taylor &#38; Francis, 2017, pp. 1709–35, doi:<a href=\"https://doi.org/10.1201/9781315119601\">10.1201/9781315119601</a>.","apa":"Edelsbrunner, H., &#38; Koehl, P. (2017). Computational topology for structural molecular biology. In C. Toth, J. O’Rourke, &#38; J. Goodman (Eds.), <i>Handbook of Discrete and Computational Geometry, Third Edition</i> (pp. 1709–1735). Taylor &#38; Francis. <a href=\"https://doi.org/10.1201/9781315119601\">https://doi.org/10.1201/9781315119601</a>","ista":"Edelsbrunner H, Koehl P. 2017.Computational topology for structural molecular biology. In: Handbook of Discrete and Computational Geometry, Third Edition. , 1709–1735.","ama":"Edelsbrunner H, Koehl P. Computational topology for structural molecular biology. In: Toth C, O’Rourke J, Goodman J, eds. <i>Handbook of Discrete and Computational Geometry, Third Edition</i>. Handbook of Discrete and Computational Geometry. Taylor &#38; Francis; 2017:1709-1735. doi:<a href=\"https://doi.org/10.1201/9781315119601\">10.1201/9781315119601</a>","chicago":"Edelsbrunner, Herbert, and Patrice Koehl. “Computational Topology for Structural Molecular Biology.” In <i>Handbook of Discrete and Computational Geometry, Third Edition</i>, edited by Csaba Toth, Joseph O’Rourke, and Jacob Goodman, 1709–35. Handbook of Discrete and Computational Geometry. Taylor &#38; Francis, 2017. <a href=\"https://doi.org/10.1201/9781315119601\">https://doi.org/10.1201/9781315119601</a>."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"eisbn":["9781498711425"]},"year":"2017","oa_version":"None","date_created":"2018-12-11T11:44:32Z","title":"Computational topology for structural molecular biology","date_published":"2017-11-09T00:00:00Z"},{"citation":{"ista":"Akopyan A, Vysotsky V. 2017. On the lengths of curves passing through boundary points of a planar convex shape. The American Mathematical Monthly. 124(7), 588–596.","ama":"Akopyan A, Vysotsky V. On the lengths of curves passing through boundary points of a planar convex shape. <i>The American Mathematical Monthly</i>. 2017;124(7):588-596. doi:<a href=\"https://doi.org/10.4169/amer.math.monthly.124.7.588\">10.4169/amer.math.monthly.124.7.588</a>","chicago":"Akopyan, Arseniy, and Vladislav Vysotsky. “On the Lengths of Curves Passing through Boundary Points of a Planar Convex Shape.” <i>The American Mathematical Monthly</i>. Mathematical Association of America, 2017. <a href=\"https://doi.org/10.4169/amer.math.monthly.124.7.588\">https://doi.org/10.4169/amer.math.monthly.124.7.588</a>.","short":"A. Akopyan, V. Vysotsky, The American Mathematical Monthly 124 (2017) 588–596.","ieee":"A. Akopyan and V. Vysotsky, “On the lengths of curves passing through boundary points of a planar convex shape,” <i>The American Mathematical Monthly</i>, vol. 124, no. 7. Mathematical Association of America, pp. 588–596, 2017.","mla":"Akopyan, Arseniy, and Vladislav Vysotsky. “On the Lengths of Curves Passing through Boundary Points of a Planar Convex Shape.” <i>The American Mathematical Monthly</i>, vol. 124, no. 7, Mathematical Association of America, 2017, pp. 588–96, doi:<a href=\"https://doi.org/10.4169/amer.math.monthly.124.7.588\">10.4169/amer.math.monthly.124.7.588</a>.","apa":"Akopyan, A., &#38; Vysotsky, V. (2017). On the lengths of curves passing through boundary points of a planar convex shape. <i>The American Mathematical Monthly</i>. Mathematical Association of America. <a href=\"https://doi.org/10.4169/amer.math.monthly.124.7.588\">https://doi.org/10.4169/amer.math.monthly.124.7.588</a>"},"day":"01","_id":"909","abstract":[{"text":"We study the lengths of curves passing through a fixed number of points on the boundary of a convex shape in the plane. We show that, for any convex shape K, there exist four points on the boundary of K such that the length of any curve passing through these points is at least half of the perimeter of K. It is also shown that the same statement does not remain valid with the additional constraint that the points are extreme points of K. Moreover, the factor &amp;#xbd; cannot be achieved with any fixed number of extreme points. We conclude the paper with a few other inequalities related to the perimeter of a convex shape.","lang":"eng"}],"language":[{"iso":"eng"}],"external_id":{"arxiv":["1605.07997"],"isi":["000413947300002"]},"type":"journal_article","quality_controlled":"1","date_published":"2017-01-01T00:00:00Z","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1605.07997"}],"intvolume":"       124","year":"2017","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication":"The American Mathematical Monthly","date_updated":"2025-07-10T12:01:35Z","isi":1,"ec_funded":1,"issue":"7","scopus_import":"1","page":"588 - 596","status":"public","publist_id":"6534","publication_status":"published","date_created":"2018-12-11T11:49:09Z","title":"On the lengths of curves passing through boundary points of a planar convex shape","oa_version":"Submitted Version","arxiv":1,"publication_identifier":{"issn":["0002-9890"]},"volume":124,"author":[{"id":"430D2C90-F248-11E8-B48F-1D18A9856A87","first_name":"Arseniy","orcid":"0000-0002-2548-617X","full_name":"Akopyan, Arseniy","last_name":"Akopyan"},{"first_name":"Vladislav","last_name":"Vysotsky","full_name":"Vysotsky, Vladislav"}],"project":[{"name":"International IST Postdoc Fellowship Programme","_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"291734"}],"article_type":"original","department":[{"_id":"HeEd"}],"month":"01","oa":1,"doi":"10.4169/amer.math.monthly.124.7.588","article_processing_charge":"No","publisher":"Mathematical Association of America"},{"has_accepted_license":"1","citation":{"apa":"Novak, S., &#38; Barton, N. H. (2017). When does frequency-independent selection maintain genetic variation? <i>Genetics</i>. Genetics Society of America. <a href=\"https://doi.org/10.1534/genetics.117.300129\">https://doi.org/10.1534/genetics.117.300129</a>","ieee":"S. Novak and N. H. Barton, “When does frequency-independent selection maintain genetic variation?,” <i>Genetics</i>, vol. 207, no. 2. Genetics Society of America, pp. 653–668, 2017.","short":"S. Novak, N.H. Barton, Genetics 207 (2017) 653–668.","mla":"Novak, Sebastian, and Nicholas H. Barton. “When Does Frequency-Independent Selection Maintain Genetic Variation?” <i>Genetics</i>, vol. 207, no. 2, Genetics Society of America, 2017, pp. 653–68, doi:<a href=\"https://doi.org/10.1534/genetics.117.300129\">10.1534/genetics.117.300129</a>.","chicago":"Novak, Sebastian, and Nicholas H Barton. “When Does Frequency-Independent Selection Maintain Genetic Variation?” <i>Genetics</i>. Genetics Society of America, 2017. <a href=\"https://doi.org/10.1534/genetics.117.300129\">https://doi.org/10.1534/genetics.117.300129</a>.","ista":"Novak S, Barton NH. 2017. When does frequency-independent selection maintain genetic variation? Genetics. 207(2), 653–668.","ama":"Novak S, Barton NH. When does frequency-independent selection maintain genetic variation? <i>Genetics</i>. 2017;207(2):653-668. doi:<a href=\"https://doi.org/10.1534/genetics.117.300129\">10.1534/genetics.117.300129</a>"},"day":"01","_id":"910","abstract":[{"text":"Frequency-independent selection is generally considered as a force that acts to reduce the genetic variation in evolving populations, yet rigorous arguments for this idea are scarce. When selection fluctuates in time, it is unclear whether frequency-independent selection may maintain genetic polymorphism without invoking additional mechanisms. We show that constant frequency-independent selection with arbitrary epistasis on a well-mixed haploid population eliminates genetic variation if we assume linkage equilibrium between alleles. To this end, we introduce the notion of frequency-independent selection at the level of alleles, which is sufficient to prove our claim and contains the notion of frequency-independent selection on haploids. When selection and recombination are weak but of the same order, there may be strong linkage disequilibrium; numerical calculations show that stable equilibria are highly unlikely. Using the example of a diallelic two-locus model, we then demonstrate that frequency-independent selection that fluctuates in time can maintain stable polymorphism if linkage disequilibrium changes its sign periodically. We put our findings in the context of results from the existing literature and point out those scenarios in which the possible role of frequency-independent selection in maintaining genetic variation remains unclear.\r\n","lang":"eng"}],"language":[{"iso":"eng"}],"external_id":{"isi":["000412232600019"]},"type":"journal_article","quality_controlled":"1","date_published":"2017-10-01T00:00:00Z","intvolume":"       207","year":"2017","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","ddc":["576"],"date_updated":"2025-04-15T08:22:21Z","publication":"Genetics","isi":1,"file_date_updated":"2020-07-14T12:48:15Z","issue":"2","ec_funded":1,"scopus_import":"1","page":"653 - 668","status":"public","file":[{"access_level":"open_access","file_size":494268,"date_created":"2018-12-12T10:17:12Z","content_type":"application/pdf","file_name":"IST-2018-974-v1+1_manuscript.pdf","checksum":"f7c32dabf52e6d9e709d9203761e39fd","creator":"system","relation":"main_file","date_updated":"2020-07-14T12:48:15Z","file_id":"5264"}],"publist_id":"6533","publication_status":"published","title":"When does frequency-independent selection maintain genetic variation?","date_created":"2018-12-11T11:49:09Z","oa_version":"Submitted Version","volume":207,"author":[{"orcid":"0000-0002-2519-824X","first_name":"Sebastian","id":"461468AE-F248-11E8-B48F-1D18A9856A87","full_name":"Novak, Sebastian","last_name":"Novak"},{"last_name":"Barton","full_name":"Barton, Nicholas H","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","first_name":"Nicholas H","orcid":"0000-0002-8548-5240"}],"project":[{"name":"Speed of Adaptation in Population Genetics and Evolutionary Computation","call_identifier":"FP7","_id":"25B1EC9E-B435-11E9-9278-68D0E5697425","grant_number":"618091"}],"department":[{"_id":"NiBa"}],"month":"10","doi":"10.1534/genetics.117.300129","oa":1,"pubrep_id":"974","corr_author":"1","article_processing_charge":"No","publisher":"Genetics Society of America"},{"publication_identifier":{"issn":["0022-2488"]},"arxiv":1,"date_created":"2018-12-11T11:49:10Z","title":"A lower bound for the BCS functional with boundary conditions at infinity","oa_version":"Submitted Version","publication_status":"published","publist_id":"6531","article_processing_charge":"No","corr_author":"1","publisher":"AIP Publishing","oa":1,"doi":"10.1063/1.4996580","volume":58,"author":[{"full_name":"Deuchert, Andreas","last_name":"Deuchert","id":"4DA65CD0-F248-11E8-B48F-1D18A9856A87","first_name":"Andreas","orcid":"0000-0003-3146-6746"}],"department":[{"_id":"RoSe"}],"month":"08","project":[{"grant_number":"694227","_id":"25C6DC12-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"Analysis of quantum many-body systems"}],"intvolume":"        58","article_number":"081901","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2017","date_published":"2017-08-01T00:00:00Z","main_file_link":[{"url":"https://arxiv.org/abs/1703.04616","open_access":"1"}],"external_id":{"arxiv":["1703.04616"],"isi":["000409197200015"]},"_id":"912","language":[{"iso":"eng"}],"abstract":[{"lang":"eng","text":"We consider a many-body system of fermionic atoms interacting via a local pair potential and subject to an external potential within the framework of Bardeen-Cooper-Schrieffer (BCS) theory. We measure the free energy of the whole sample with respect to the free energy of a reference state which allows us to define a BCS functional with boundary conditions at infinity. Our main result is a lower bound for this energy functional in terms of expressions that typically appear in Ginzburg-Landau functionals.\r\n"}],"quality_controlled":"1","type":"journal_article","citation":{"chicago":"Deuchert, Andreas. “A Lower Bound for the BCS Functional with Boundary Conditions at Infinity.” <i> Journal of Mathematical Physics</i>. AIP Publishing, 2017. <a href=\"https://doi.org/10.1063/1.4996580\">https://doi.org/10.1063/1.4996580</a>.","ama":"Deuchert A. A lower bound for the BCS functional with boundary conditions at infinity. <i> Journal of Mathematical Physics</i>. 2017;58(8). doi:<a href=\"https://doi.org/10.1063/1.4996580\">10.1063/1.4996580</a>","ista":"Deuchert A. 2017. A lower bound for the BCS functional with boundary conditions at infinity.  Journal of Mathematical Physics. 58(8), 081901.","apa":"Deuchert, A. (2017). A lower bound for the BCS functional with boundary conditions at infinity. <i> Journal of Mathematical Physics</i>. AIP Publishing. <a href=\"https://doi.org/10.1063/1.4996580\">https://doi.org/10.1063/1.4996580</a>","mla":"Deuchert, Andreas. “A Lower Bound for the BCS Functional with Boundary Conditions at Infinity.” <i> Journal of Mathematical Physics</i>, vol. 58, no. 8, 081901, AIP Publishing, 2017, doi:<a href=\"https://doi.org/10.1063/1.4996580\">10.1063/1.4996580</a>.","short":"A. Deuchert,  Journal of Mathematical Physics 58 (2017).","ieee":"A. Deuchert, “A lower bound for the BCS functional with boundary conditions at infinity,” <i> Journal of Mathematical Physics</i>, vol. 58, no. 8. AIP Publishing, 2017."},"day":"01","status":"public","issue":"8","ec_funded":1,"scopus_import":"1","publication":" Journal of Mathematical Physics","date_updated":"2025-06-04T08:19:58Z","isi":1},{"pubrep_id":"849","acknowledgement":"We thank two anonymous reviewers for helpful suggestions on the manuscript.","oa":1,"doi":"10.1098/rsos.170547","department":[{"_id":"SyCr"}],"month":"07","volume":4,"author":[{"full_name":"Giehr, Julia","last_name":"Giehr","first_name":"Julia"},{"last_name":"Grasse","full_name":"Grasse, Anna V","first_name":"Anna V","id":"406F989C-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Sylvia","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2193-3868","full_name":"Cremer, Sylvia","last_name":"Cremer"},{"first_name":"Jürgen","last_name":"Heinze","full_name":"Heinze, Jürgen"},{"last_name":"Schrempf","full_name":"Schrempf, Alexandra","first_name":"Alexandra"}],"publisher":"Royal Society, The","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"article_processing_charge":"No","related_material":{"record":[{"status":"public","id":"9853","relation":"research_data"}]},"publist_id":"6527","publication_status":"published","file":[{"file_id":"4684","date_updated":"2020-07-14T12:48:15Z","relation":"main_file","creator":"system","file_name":"IST-2017-849-v1+1_2017_Grasse_Cremer_AntQueens.pdf","checksum":"351ae5e7a37e6e7d9295cd41146c4190","file_size":530412,"date_created":"2018-12-12T10:08:24Z","content_type":"application/pdf","access_level":"open_access"}],"publication_identifier":{"issn":["2054-5703"]},"oa_version":"Published Version","title":"Ant queens increase their reproductive efforts after pathogen infection","date_created":"2018-12-11T11:49:10Z","file_date_updated":"2020-07-14T12:48:15Z","isi":1,"date_updated":"2025-07-10T12:01:39Z","publication":"Royal Society Open Science","status":"public","scopus_import":"1","issue":"7","type":"journal_article","quality_controlled":"1","abstract":[{"lang":"eng","text":"Infections with potentially lethal pathogens may negatively affect an individual’s lifespan and decrease its reproductive value. The terminal investment hypothesis predicts that individuals faced with a reduced survival should invest more into reproduction instead of maintenance and growth. Several studies suggest that individuals are indeed able to estimate their body condition and to increase their reproductive effort with approaching death, while other studies gave ambiguous results. We investigate whether queens of a perennial social insect (ant) are able to boost their reproduction following infection with an obligate killing pathogen. Social insect queens are special with regard to reproduction and aging, as they outlive conspecific non-reproductive workers. Moreover, in the ant Cardiocondyla obscurior, fecundity increases with queen age. However, it remained unclear whether this reflects negative reproductive senescence or terminal investment in response to approaching death. Here, we test whether queens of C. obscurior react to infection with the entomopathogenic fungus Metarhizium brunneum by an increased egg-laying rate. We show that a fungal infection triggers a reinforced investment in reproduction in queens. This adjustment of the reproductive rate by ant queens is consistent with predictions of the terminal investment hypothesis and is reported for the first time in a social insect."}],"_id":"914","language":[{"iso":"eng"}],"external_id":{"isi":["000406670000025"]},"has_accepted_license":"1","citation":{"chicago":"Giehr, Julia, Anna V Grasse, Sylvia Cremer, Jürgen Heinze, and Alexandra Schrempf. “Ant Queens Increase Their Reproductive Efforts after Pathogen Infection.” <i>Royal Society Open Science</i>. Royal Society, The, 2017. <a href=\"https://doi.org/10.1098/rsos.170547\">https://doi.org/10.1098/rsos.170547</a>.","ista":"Giehr J, Grasse AV, Cremer S, Heinze J, Schrempf A. 2017. Ant queens increase their reproductive efforts after pathogen infection. Royal Society Open Science. 4(7), 170547.","ama":"Giehr J, Grasse AV, Cremer S, Heinze J, Schrempf A. Ant queens increase their reproductive efforts after pathogen infection. <i>Royal Society Open Science</i>. 2017;4(7). doi:<a href=\"https://doi.org/10.1098/rsos.170547\">10.1098/rsos.170547</a>","apa":"Giehr, J., Grasse, A. V., Cremer, S., Heinze, J., &#38; Schrempf, A. (2017). Ant queens increase their reproductive efforts after pathogen infection. <i>Royal Society Open Science</i>. Royal Society, The. <a href=\"https://doi.org/10.1098/rsos.170547\">https://doi.org/10.1098/rsos.170547</a>","short":"J. Giehr, A.V. Grasse, S. Cremer, J. Heinze, A. Schrempf, Royal Society Open Science 4 (2017).","ieee":"J. Giehr, A. V. Grasse, S. Cremer, J. Heinze, and A. Schrempf, “Ant queens increase their reproductive efforts after pathogen infection,” <i>Royal Society Open Science</i>, vol. 4, no. 7. Royal Society, The, 2017.","mla":"Giehr, Julia, et al. “Ant Queens Increase Their Reproductive Efforts after Pathogen Infection.” <i>Royal Society Open Science</i>, vol. 4, no. 7, 170547, Royal Society, The, 2017, doi:<a href=\"https://doi.org/10.1098/rsos.170547\">10.1098/rsos.170547</a>."},"day":"05","year":"2017","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["576","592"],"intvolume":"         4","article_number":"170547","date_published":"2017-07-05T00:00:00Z"}]