[{"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1101/2025.10.09.680955"}],"oa_version":"Preprint","oa":1,"project":[{"_id":"ebb66355-77a9-11ec-83b8-b8ac210a4dae","grant_number":"101041551","name":"Development and Evolution of Tetrapod Motor Circuits"},{"name":"A Tale of Two Circuits: Rostrocaudal spinal cord patterning during the swim-to-limb transition of Xenopus metamorphosis","grant_number":"27229","_id":"907b765e-16d5-11f0-9cad-fef108a945b1"}],"acknowledgement":"We would like to thank the members of the Sweeney Lab for discussion and support; Andrey\r\nBydanov for technical assistance with single-cell sequencing processing; and Jay Bikoff,\r\nNikos Konstantinides, Maria Tosches, and Graziana Gatto for comments on the manuscript. \r\nThis research was supported by: Horizon Europe ERC Starting Grant 101041551 (L.B.S,\r\nY.I., S.P.); Special Research Program (SFB) of the Austrian Science Fund (FWF) F7814-B\r\n(L.B.S., S.P., E.M.T); Austrian Science Fund (FWF) 10.55776/COE16 (L.B.S., Y.I., E.M.T.);\r\nAustrian Academy of Sciences DOC Fellowship 27229 (S.P.); ERC Advanced Grant 742046\r\n(E.M.T.); NIH award R24 OD031956 (L.P.); and in part by the Intramural Research\r\nProgram of the National Institutes of Health (NIH) through 1ZIA NS003153 to A.J.L.\r\nThe contributions of the NIH author are considered Works of the United States\r\nGovernment. The findings and conclusions presented in this paper are those of\r\nthe authors and do not necessarily reflect the views of the NIH or the U.S. Department\r\nof Health and Human Services. ","OA_place":"repository","_id":"21920","author":[{"last_name":"Ignatyev","full_name":"Ignatyev, Yuri","first_name":"Yuri"},{"last_name":"Papadopoulos","first_name":"Stavros","full_name":"Papadopoulos, Stavros","id":"40606b92-f128-11eb-9611-bf66a98cfa5c"},{"last_name":"Soretić","full_name":"Soretić, Mateja","first_name":"Mateja"},{"orcid":"0000-0003-1732-1559","full_name":"Yeung, Jake","last_name":"Yeung","id":"123012b2-db30-11eb-b4d8-a35840c0551b","first_name":"Jake"},{"first_name":"Tzi-Yang","full_name":"Lin, Tzi-Yang","last_name":"Lin"},{"full_name":"Tanaka, Elly M","first_name":"Elly M","last_name":"Tanaka"},{"full_name":"Peshkin, Leonid","last_name":"Peshkin","first_name":"Leonid"},{"last_name":"Levine","full_name":"Levine, Ariel J","first_name":"Ariel J"},{"full_name":"Gabitto, Mariano I","last_name":"Gabitto","first_name":"Mariano I"},{"orcid":"0000-0001-9242-5601","first_name":"Lora Beatrice Jaeger","full_name":"Sweeney, Lora Beatrice Jaeger","id":"56BE8254-C4F0-11E9-8E45-0B23E6697425","last_name":"Sweeney"}],"publication":"bioRxiv","date_published":"2025-10-11T00:00:00Z","OA_type":"green","title":"Innovations in spinal cord cell type heterogeneity across vertebrate evolution","article_processing_charge":"No","tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","image":"/images/cc_by_nc_nd.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)"},"type":"preprint","date_created":"2026-05-27T06:54:04Z","year":"2025","doi":"10.1101/2025.10.09.680955","day":"11","date_updated":"2026-05-27T07:25:41Z","corr_author":"1","abstract":[{"lang":"eng","text":"Vertebrates display remarkable diversity of sensorimotor behaviors, each adapted to distinct ecological and survival demands. This diversity raises fundamental questions about the evolutionary origin of motor control: do conserved spinal circuits underlie these behaviors, and how have they diverged across species. Recent studies detail spinal cell-type architecture in mammals but comparable, high-resolution atlases of the non-mammalian spinal cord are lacking. Here, we compare spinal cord cell types between fish, frogs, mice and humans, spanning ∼450 million years of evolution. Across species, we define highly conserved programs of cell type specification that segregate spinal neurons into nearly identical cardinal classes during development. This contrasts with adult stages, when spinal cell-type composition selectively diverges for excitatory neuron subpopulations. Using spatial transcriptomics, we localize this species divergence to the superficial, dorsal spinal cord, where variant neuropeptide expression defines mammalian-specific cell types. The most dorsal spinal cord thus emerges as a recently evolved hub for sensory integration in mammals, a neospinal cord analogous to the neocortex.</jats:p>"}],"publication_status":"submitted","citation":{"ama":"Ignatyev Y, Papadopoulos S, Soretić M, et al. Innovations in spinal cord cell type heterogeneity across vertebrate evolution. <i>bioRxiv</i>. doi:<a href=\"https://doi.org/10.1101/2025.10.09.680955\">10.1101/2025.10.09.680955</a>","short":"Y. Ignatyev, S. Papadopoulos, M. Soretić, J. Yeung, T.-Y. Lin, E.M. Tanaka, L. Peshkin, A.J. Levine, M.I. Gabitto, L.B. Sweeney, BioRxiv (n.d.).","mla":"Ignatyev, Yuri, et al. “Innovations in Spinal Cord Cell Type Heterogeneity across Vertebrate Evolution.” <i>BioRxiv</i>, doi:<a href=\"https://doi.org/10.1101/2025.10.09.680955\">10.1101/2025.10.09.680955</a>.","chicago":"Ignatyev, Yuri, Stavros Papadopoulos, Mateja Soretić, Jake Yeung, Tzi-Yang Lin, Elly M Tanaka, Leonid Peshkin, Ariel J Levine, Mariano I Gabitto, and Lora B. Sweeney. “Innovations in Spinal Cord Cell Type Heterogeneity across Vertebrate Evolution.” <i>BioRxiv</i>, n.d. <a href=\"https://doi.org/10.1101/2025.10.09.680955\">https://doi.org/10.1101/2025.10.09.680955</a>.","ieee":"Y. Ignatyev <i>et al.</i>, “Innovations in spinal cord cell type heterogeneity across vertebrate evolution,” <i>bioRxiv</i>. .","apa":"Ignatyev, Y., Papadopoulos, S., Soretić, M., Yeung, J., Lin, T.-Y., Tanaka, E. M., … Sweeney, L. B. (n.d.). Innovations in spinal cord cell type heterogeneity across vertebrate evolution. <i>bioRxiv</i>. <a href=\"https://doi.org/10.1101/2025.10.09.680955\">https://doi.org/10.1101/2025.10.09.680955</a>","ista":"Ignatyev Y, Papadopoulos S, Soretić M, Yeung J, Lin T-Y, Tanaka EM, Peshkin L, Levine AJ, Gabitto MI, Sweeney LB. Innovations in spinal cord cell type heterogeneity across vertebrate evolution. bioRxiv, <a href=\"https://doi.org/10.1101/2025.10.09.680955\">10.1101/2025.10.09.680955</a>."},"fulldoi":"https://doi.org/10.1101/2025.10.09.680955","month":"10","language":[{"iso":"eng"}],"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","status":"public","department":[{"_id":"LoSw"},{"_id":"ScienComp"}]},{"oa_version":"Published Version","acknowledgement":"We thank the animal house staff of the Tata Institute of Fundamental Research, Mumbai (TIFR), for their excellent support; Gordon Fishell (Harvard Medical School, USA), and Goichi Miyoshi (Gunma University, Japan) for the Foxg1 floxed mouse line; Hiroshi Kawasaki (Kanazawa University, Japan) for the plasmids pCAG-FGF8 and pCAG-sFgfr3c; Soo Kyung Lee (University at Buffalo, The State University of New York, USA) for the Foxg1lox/lox genotyping primers and protocol. We thank Deepak Modi and Vainav Patel (National Institute for Research in Reproductive and Child Health, NIRRCH, Mumbai, India) for the use of the NIRRCH FACS Facility, and the staff of the NIRRCH and TIFR FACS facilities for their assistance. We thank Denis Jabaudon (University of Geneva, Switzerland) for his critical comments on the manuscript and members of the Jabaudon lab for helpful discussions. This work was funded by the Department of Atomic Energy (DAE), Govt. of India (Project Identification no. RTI4003,\r\nDAE OM no. 1303/2/2019/R&D-II/DAE/2079). ","_id":"14647","external_id":{"pmid":["40085500"]},"author":[{"first_name":"Mahima","full_name":"Bose, Mahima","last_name":"Bose"},{"first_name":"Varun","full_name":"Suresh, Varun","last_name":"Suresh"},{"full_name":"Mishra, Urvi","last_name":"Mishra","first_name":"Urvi"},{"full_name":"Talwar, Ishita","first_name":"Ishita","last_name":"Talwar"},{"first_name":"Anuradha","last_name":"Yadav","full_name":"Yadav, Anuradha"},{"last_name":"Biswas","full_name":"Biswas, Shiona","first_name":"Shiona"},{"orcid":"0000-0003-2279-1061","last_name":"Hippenmeyer","full_name":"Hippenmeyer, Simon","id":"37B36620-F248-11E8-B48F-1D18A9856A87","first_name":"Simon"},{"first_name":"Shubha","last_name":"Tole","full_name":"Tole, Shubha"}],"publication":"eLife","scopus_import":"1","file_date_updated":"2025-04-03T11:19:26Z","date_published":"2025-03-14T00:00:00Z","title":"Dual role of FOXG1 in regulating gliogenesis in the developing neocortex via the FGF signalling pathway","publication_identifier":{"eissn":["2050-084X"]},"type":"journal_article","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"article_processing_charge":"Yes","volume":13,"date_created":"2023-12-06T13:07:01Z","day":"14","date_updated":"2025-05-14T11:41:52Z","abstract":[{"text":"In the developing vertebrate central nervous system, neurons and glia typically arise\r\nsequentially from common progenitors. Here, we report that the transcription factor Forkhead\r\nBox G1 (Foxg1) regulates gliogenesis in the mouse neocortex via distinct cell-autonomous roles in progenitors and postmitotic neurons that regulate different aspects of the gliogenic FGF signalling pathway. We demonstrate that loss of Foxg1 in cortical progenitors at neurogenic stages causes premature astrogliogenesis. We identify a novel FOXG1 target, the pro-gliogenic FGF pathway component Fgfr3, which is suppressed by FOXG1 cell-autonomously to maintain neurogenesis. Furthermore, FOXG1 can also suppress premature astrogliogenesis triggered by the augmentation of FGF signalling. We identify a second novel function of FOXG1 in regulating the expression of gliogenic cues in newborn neocortical upper-layer neurons. Loss of FOXG1 in postmitotic neurons non-autonomously enhances gliogenesis in the progenitors via FGF signalling. These results fit well with the model that newborn neurons secrete cues that trigger progenitors to produce the next wave of cell types, astrocytes. If FGF signalling is attenuated in Foxg1 null progenitors, they progress to oligodendrocyte production. Therefore, loss of FOXG1 transitions the progenitor to a gliogenic state, producing either astrocytes or oligodendrocytes depending on FGF signalling levels. Our results uncover how FOXG1 integrates extrinsic signalling via the FGF pathway to regulate the sequential generation of neurons, astrocytes, and oligodendrocytes in the cerebral cortex. ","lang":"eng"}],"fulldoi":"https://doi.org/10.7554/elife.101851.3","language":[{"iso":"eng"}],"month":"03","has_accepted_license":"1","department":[{"_id":"SiHi"}],"status":"public","oa":1,"OA_place":"publisher","article_type":"original","article_number":"101851","pmid":1,"file":[{"file_name":"2025_eLife_Bose.pdf","date_updated":"2025-04-03T11:19:26Z","checksum":"64a6a6f86e24b21fe72c7a7fd6056fed","file_id":"19467","success":1,"creator":"dernst","access_level":"open_access","content_type":"application/pdf","file_size":17462771,"relation":"main_file","date_created":"2025-04-03T11:19:26Z"}],"intvolume":"        13","OA_type":"gold","publisher":"eLife Sciences Publications","ddc":["570"],"quality_controlled":"1","year":"2025","doi":"10.7554/elife.101851.3","publication_status":"published","citation":{"chicago":"Bose, Mahima, Varun Suresh, Urvi Mishra, Ishita Talwar, Anuradha Yadav, Shiona Biswas, Simon Hippenmeyer, and Shubha Tole. “Dual Role of FOXG1 in Regulating Gliogenesis in the Developing Neocortex via the FGF Signalling Pathway.” <i>ELife</i>. eLife Sciences Publications, 2025. <a href=\"https://doi.org/10.7554/elife.101851.3\">https://doi.org/10.7554/elife.101851.3</a>.","mla":"Bose, Mahima, et al. “Dual Role of FOXG1 in Regulating Gliogenesis in the Developing Neocortex via the FGF Signalling Pathway.” <i>ELife</i>, vol. 13, 101851, eLife Sciences Publications, 2025, doi:<a href=\"https://doi.org/10.7554/elife.101851.3\">10.7554/elife.101851.3</a>.","ista":"Bose M, Suresh V, Mishra U, Talwar I, Yadav A, Biswas S, Hippenmeyer S, Tole S. 2025. Dual role of FOXG1 in regulating gliogenesis in the developing neocortex via the FGF signalling pathway. eLife. 13, 101851.","ieee":"M. Bose <i>et al.</i>, “Dual role of FOXG1 in regulating gliogenesis in the developing neocortex via the FGF signalling pathway,” <i>eLife</i>, vol. 13. eLife Sciences Publications, 2025.","apa":"Bose, M., Suresh, V., Mishra, U., Talwar, I., Yadav, A., Biswas, S., … Tole, S. (2025). Dual role of FOXG1 in regulating gliogenesis in the developing neocortex via the FGF signalling pathway. <i>ELife</i>. eLife Sciences Publications. <a href=\"https://doi.org/10.7554/elife.101851.3\">https://doi.org/10.7554/elife.101851.3</a>","short":"M. Bose, V. Suresh, U. Mishra, I. Talwar, A. Yadav, S. Biswas, S. Hippenmeyer, S. Tole, ELife 13 (2025).","ama":"Bose M, Suresh V, Mishra U, et al. Dual role of FOXG1 in regulating gliogenesis in the developing neocortex via the FGF signalling pathway. <i>eLife</i>. 2025;13. doi:<a href=\"https://doi.org/10.7554/elife.101851.3\">10.7554/elife.101851.3</a>"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"title":"Multiplicative auction algorithm for approximate maximum weight bipartite matching","publication_identifier":{"issn":["0025-5610"],"eissn":["1436-4646"]},"date_published":"2025-03-01T00:00:00Z","arxiv":1,"external_id":{"isi":["001176048100003"],"arxiv":["2301.09217"]},"publication":"Mathematical Programming","author":[{"first_name":"Da Wei","full_name":"Zheng, Da Wei","last_name":"Zheng"},{"first_name":"Monika H","last_name":"Henzinger","full_name":"Henzinger, Monika H","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","orcid":"0000-0002-5008-6530"}],"scopus_import":"1","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2301.09217","open_access":"1"}],"oa_version":"Preprint","acknowledgement":"The first author thanks Chandra Chekuri for useful discussions about this paper. This work was done in part at the University of Vienna. This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant agreement No. 101019564 “The Design of Modern Fully Dynamic Data Structures (MoDynStruct)” and from the Austrian Science Fund (FWF) project “Fast Algorithms for a Reactive Network Layer (ReactNet)”, P 33775-N, with additional funding from the netidee SCIENCE Stiftung, 2020–2024.","_id":"15121","language":[{"iso":"eng"}],"month":"03","status":"public","department":[{"_id":"MoHe"}],"day":"01","date_updated":"2025-09-09T12:39:58Z","abstract":[{"lang":"eng","text":"We present an auction algorithm using multiplicative instead of constant weight updates to compute a (1-E)-approximate maximum weight matching (MWM) in a bipartite graph with n vertices and m edges in time 0(mE-1), beating the running time of the fastest known approximation algorithm of Duan and Pettie [JACM ’14] that runs in 0(mE-1 log E-1). Our algorithm is very simple and it can be extended to give a dynamic data structure that maintains a (1-E)-approximate maximum weight matching under (1) one-sided vertex deletions (with incident edges) and (2) one-sided vertex insertions (with incident edges sorted by weight) to the other side. The total time time used is 0(mE-1), where m is the sum of the number of initially existing and inserted edges."}],"fulldoi":"https://doi.org/10.1007/s10107-024-02066-3","date_created":"2024-03-17T23:00:58Z","volume":210,"type":"journal_article","article_processing_charge":"No","intvolume":"       210","OA_type":"green","publisher":"Springer Nature","article_type":"original","project":[{"name":"The design and evaluation of modern fully dynamic data structures","_id":"bd9ca328-d553-11ed-ba76-dc4f890cfe62","grant_number":"101019564","call_identifier":"H2020"},{"grant_number":"P33775","_id":"bd9e3a2e-d553-11ed-ba76-8aa684ce17fe","name":"Fast Algorithms for a Reactive Network Layer"}],"related_material":{"record":[{"status":"public","id":"13236","relation":"earlier_version"}]},"oa":1,"OA_place":"repository","isi":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","publication_status":"published","citation":{"apa":"Zheng, D. W., &#38; Henzinger, M. (2025). Multiplicative auction algorithm for approximate maximum weight bipartite matching. <i>Mathematical Programming</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s10107-024-02066-3\">https://doi.org/10.1007/s10107-024-02066-3</a>","ieee":"D. W. Zheng and M. Henzinger, “Multiplicative auction algorithm for approximate maximum weight bipartite matching,” <i>Mathematical Programming</i>, vol. 210. Springer Nature, pp. 881–894, 2025.","ista":"Zheng DW, Henzinger M. 2025. Multiplicative auction algorithm for approximate maximum weight bipartite matching. Mathematical Programming. 210, 881–894.","mla":"Zheng, Da Wei, and Monika Henzinger. “Multiplicative Auction Algorithm for Approximate Maximum Weight Bipartite Matching.” <i>Mathematical Programming</i>, vol. 210, Springer Nature, 2025, pp. 881–94, doi:<a href=\"https://doi.org/10.1007/s10107-024-02066-3\">10.1007/s10107-024-02066-3</a>.","chicago":"Zheng, Da Wei, and Monika Henzinger. “Multiplicative Auction Algorithm for Approximate Maximum Weight Bipartite Matching.” <i>Mathematical Programming</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1007/s10107-024-02066-3\">https://doi.org/10.1007/s10107-024-02066-3</a>.","ama":"Zheng DW, Henzinger M. Multiplicative auction algorithm for approximate maximum weight bipartite matching. <i>Mathematical Programming</i>. 2025;210:881-894. doi:<a href=\"https://doi.org/10.1007/s10107-024-02066-3\">10.1007/s10107-024-02066-3</a>","short":"D.W. Zheng, M. Henzinger, Mathematical Programming 210 (2025) 881–894."},"doi":"10.1007/s10107-024-02066-3","year":"2025","page":"881-894","ec_funded":1,"quality_controlled":"1"},{"day":"01","date_updated":"2025-05-19T13:54:31Z","abstract":[{"text":"We prove a universal mesoscopic central limit theorem for linear eigenvalue statistics of a Wigner-type matrix inside the bulk of the spectrum with compactly supported twice continuously differentiable test functions. The main novel ingredient is an optimal local law for the two-point function $T(z,\\zeta)$  and a general class of related quantities involving two resolvents at nearby spectral parameters.","lang":"eng"},{"lang":"fre","text":"On établit un théorème limite central universel pour les statistiques linéaires mésoscopiques des valeurs propres d’une matrice de type Wigner au milieu du spectre, avec des fonctions de classe \r\n et à support compact. La principale nouveauté de cette approche est qu’elle repose sur une loi locale optimale pour la fonction à deux points $T(z,\\zeta)$ , ainsi que pour une classe plus générale d’observables impliquant deux résolvantes évaluées en des paramètres proches."}],"fulldoi":"https://doi.org/10.1214/23-AIHP1438","month":"02","language":[{"iso":"eng"}],"department":[{"_id":"GradSch"},{"_id":"LaEr"}],"status":"public","article_processing_charge":"No","type":"journal_article","date_created":"2024-03-20T09:41:04Z","volume":61,"date_published":"2025-02-01T00:00:00Z","arxiv":1,"title":"Mesoscopic eigenvalue statistics for Wigner-type matrices","publication_identifier":{"issn":["0246-0203"]},"oa_version":"Preprint","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2301.01712","open_access":"1"}],"acknowledgement":"I would like to express my gratitude to László Erdős for suggesting the project and supervising my work. I am also thankful to Yuanyuan Xu and Oleksii Kolupaiev for many helpful discussions. Furthermore, I am grateful to Guillaume Dubach for translating the abstract into French.\r\nThe author was supported by the ERC Advanced Grant “RMTBeyond” No. 101020331.","_id":"15128","external_id":{"arxiv":["2301.01712"],"isi":["001427953600004"]},"publication":"Annales de l'institut Henri Poincare (B) Probability and Statistics","scopus_import":"1","author":[{"full_name":"Riabov, Volodymyr","id":"1949f904-edfb-11eb-afb5-e2dfddabb93b","first_name":"Volodymyr","last_name":"Riabov"}],"corr_author":"1","publication_status":"published","citation":{"apa":"Riabov, V. (2025). Mesoscopic eigenvalue statistics for Wigner-type matrices. <i>Annales de l’institut Henri Poincare (B) Probability and Statistics</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/23-AIHP1438\">https://doi.org/10.1214/23-AIHP1438</a>","ieee":"V. Riabov, “Mesoscopic eigenvalue statistics for Wigner-type matrices,” <i>Annales de l’institut Henri Poincare (B) Probability and Statistics</i>, vol. 61, no. 1. Institute of Mathematical Statistics, pp. 129–154, 2025.","ista":"Riabov V. 2025. Mesoscopic eigenvalue statistics for Wigner-type matrices. Annales de l’institut Henri Poincare (B) Probability and Statistics. 61(1), 129–154.","mla":"Riabov, Volodymyr. “Mesoscopic Eigenvalue Statistics for Wigner-Type Matrices.” <i>Annales de l’institut Henri Poincare (B) Probability and Statistics</i>, vol. 61, no. 1, Institute of Mathematical Statistics, 2025, pp. 129–54, doi:<a href=\"https://doi.org/10.1214/23-AIHP1438\">10.1214/23-AIHP1438</a>.","chicago":"Riabov, Volodymyr. “Mesoscopic Eigenvalue Statistics for Wigner-Type Matrices.” <i>Annales de l’institut Henri Poincare (B) Probability and Statistics</i>. Institute of Mathematical Statistics, 2025. <a href=\"https://doi.org/10.1214/23-AIHP1438\">https://doi.org/10.1214/23-AIHP1438</a>.","short":"V. Riabov, Annales de l’institut Henri Poincare (B) Probability and Statistics 61 (2025) 129–154.","ama":"Riabov V. Mesoscopic eigenvalue statistics for Wigner-type matrices. <i>Annales de l’institut Henri Poincare (B) Probability and Statistics</i>. 2025;61(1):129-154. doi:<a href=\"https://doi.org/10.1214/23-AIHP1438\">10.1214/23-AIHP1438</a>"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","doi":"10.1214/23-AIHP1438","year":"2025","ec_funded":1,"page":"129-154","OA_type":"green","intvolume":"        61","issue":"1","publisher":"Institute of Mathematical Statistics","oa":1,"project":[{"name":"Random matrices beyond Wigner-Dyson-Mehta","grant_number":"101020331","_id":"62796744-2b32-11ec-9570-940b20777f1d","call_identifier":"H2020"}],"isi":1,"OA_place":"repository","article_type":"original"},{"year":"2025","doi":"10.1007/s10703-024-00447-0","ec_funded":1,"page":"3-48","ddc":["000"],"quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","PlanS_conform":"1","publication_status":"published","citation":{"ama":"Bartocci E, Ferrere T, Henzinger TA, Nickovic D, Oliveira da Costa A. Information-flow interfaces. <i>Formal Methods in System Design</i>. 2025;66:3-48. doi:<a href=\"https://doi.org/10.1007/s10703-024-00447-0\">10.1007/s10703-024-00447-0</a>","short":"E. Bartocci, T. Ferrere, T.A. Henzinger, D. Nickovic, A. Oliveira da Costa, Formal Methods in System Design 66 (2025) 3–48.","chicago":"Bartocci, Ezio, Thomas Ferrere, Thomas A Henzinger, Dejan Nickovic, and Ana Oliveira da Costa. “Information-Flow Interfaces.” <i>Formal Methods in System Design</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1007/s10703-024-00447-0\">https://doi.org/10.1007/s10703-024-00447-0</a>.","mla":"Bartocci, Ezio, et al. “Information-Flow Interfaces.” <i>Formal Methods in System Design</i>, vol. 66, Springer Nature, 2025, pp. 3–48, doi:<a href=\"https://doi.org/10.1007/s10703-024-00447-0\">10.1007/s10703-024-00447-0</a>.","ista":"Bartocci E, Ferrere T, Henzinger TA, Nickovic D, Oliveira da Costa A. 2025. Information-flow interfaces. Formal Methods in System Design. 66, 3–48.","ieee":"E. Bartocci, T. Ferrere, T. A. Henzinger, D. Nickovic, and A. Oliveira da Costa, “Information-flow interfaces,” <i>Formal Methods in System Design</i>, vol. 66. Springer Nature, pp. 3–48, 2025.","apa":"Bartocci, E., Ferrere, T., Henzinger, T. A., Nickovic, D., &#38; Oliveira da Costa, A. (2025). Information-flow interfaces. <i>Formal Methods in System Design</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s10703-024-00447-0\">https://doi.org/10.1007/s10703-024-00447-0</a>"},"article_type":"original","oa":1,"project":[{"grant_number":"101020093","_id":"62781420-2b32-11ec-9570-8d9b63373d4d","name":"Vigilant Algorithmic Monitoring of Software","call_identifier":"H2020"},{"name":"Interface Theory for Security and Privacy","_id":"34a1b658-11ca-11ed-8bc3-c75229f0241e","grant_number":"F8502"}],"related_material":{"record":[{"id":"11355","relation":"shorter_version","status":"public"}]},"OA_place":"publisher","isi":1,"intvolume":"        66","OA_type":"hybrid","publisher":"Springer Nature","file":[{"date_created":"2025-12-30T06:50:12Z","file_size":3860690,"relation":"main_file","content_type":"application/pdf","success":1,"access_level":"open_access","creator":"dernst","checksum":"244a71a916103b8ea08e9d0bab32bcd9","file_id":"20879","date_updated":"2025-12-30T06:50:12Z","file_name":"2025_FormalMethodsSysDesign_Bartocci.pdf"}],"date_created":"2024-06-02T22:00:57Z","volume":66,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"type":"journal_article","article_processing_charge":"Yes (via OA deal)","language":[{"iso":"eng"}],"month":"05","has_accepted_license":"1","status":"public","department":[{"_id":"ToHe"}],"date_updated":"2025-12-30T06:50:51Z","day":"01","abstract":[{"lang":"eng","text":"Contract-based design is a promising methodology for taming the complexity of developing sophisticated systems. A formal contract distinguishes between assumptions, which are constraints that the designer of a component puts on the environments in which the component can be used safely, and guarantees, which are promises that the designer asks from the team that implements the component. A theory of formal contracts can be formalized as an interface theory, which supports the composition and refinement of both assumptions and guarantees. Although there is a rich landscape of contract-based design methods that address functional and extra-functional properties, we present the first interface theory designed to ensure system-wide security properties. Our framework provides a refinement relation and a composition operation that support both incremental design and independent implementability. We develop our theory for both stateless and stateful interfaces. Additionally, we introduce information-flow contracts where assumptions and guarantees are sets of flow relations. We use these contracts to illustrate how to enrich information-flow interfaces with a semantic view. We illustrate the applicability of our framework with two examples inspired by the automotive domain."}],"fulldoi":"https://doi.org/10.1007/s10703-024-00447-0","external_id":{"arxiv":["2002.06465"],"isi":["001230084200001"]},"publication":"Formal Methods in System Design","author":[{"last_name":"Bartocci","full_name":"Bartocci, Ezio","first_name":"Ezio"},{"full_name":"Ferrere, Thomas","id":"40960E6E-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas","last_name":"Ferrere","orcid":"0000-0001-5199-3143"},{"orcid":"0000-0002-2985-7724","first_name":"Thomas A","last_name":"Henzinger","full_name":"Henzinger, Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Nickovic, Dejan","first_name":"Dejan","id":"41BCEE5C-F248-11E8-B48F-1D18A9856A87","last_name":"Nickovic"},{"orcid":"0000-0002-8741-5799","last_name":"Oliveira da Costa","first_name":"Ana","full_name":"Oliveira da Costa, Ana","id":"f347ec37-6676-11ee-b395-a888cb7b4fb4"}],"scopus_import":"1","oa_version":"Published Version","acknowledgement":"This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 956123 and it was funded in part by the Austrian Science Fund (FWF) project W1255-N23, by the Austrian FWF project ZK-35, by the FWF project SpyCoDe 10.55776/F85 and by the ERC-2020-AdG 101020093. This paper extends the text and the results of the manuscript published at FASE 2022 [1].","_id":"17094","title":"Information-flow interfaces","publication_identifier":{"eissn":["1572-8102"],"issn":["0925-9856"]},"file_date_updated":"2025-12-30T06:50:12Z","date_published":"2025-05-01T00:00:00Z","arxiv":1},{"ddc":["510"],"quality_controlled":"1","doi":"10.1016/j.dam.2024.10.002","year":"2025","ec_funded":1,"page":"506-511","publication_status":"published","citation":{"chicago":"Anastos, Michael, Simona Boyadzhiyska, Silas Rathke, and Juanjo Rué. “On the Chromatic Number of Powers of Subdivisions of Graphs.” <i>Discrete Applied Mathematics</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.dam.2024.10.002\">https://doi.org/10.1016/j.dam.2024.10.002</a>.","mla":"Anastos, Michael, et al. “On the Chromatic Number of Powers of Subdivisions of Graphs.” <i>Discrete Applied Mathematics</i>, vol. 360, Elsevier, 2025, pp. 506–11, doi:<a href=\"https://doi.org/10.1016/j.dam.2024.10.002\">10.1016/j.dam.2024.10.002</a>.","ista":"Anastos M, Boyadzhiyska S, Rathke S, Rué J. 2025. On the chromatic number of powers of subdivisions of graphs. Discrete Applied Mathematics. 360, 506–511.","apa":"Anastos, M., Boyadzhiyska, S., Rathke, S., &#38; Rué, J. (2025). On the chromatic number of powers of subdivisions of graphs. <i>Discrete Applied Mathematics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.dam.2024.10.002\">https://doi.org/10.1016/j.dam.2024.10.002</a>","ieee":"M. Anastos, S. Boyadzhiyska, S. Rathke, and J. Rué, “On the chromatic number of powers of subdivisions of graphs,” <i>Discrete Applied Mathematics</i>, vol. 360. Elsevier, pp. 506–511, 2025.","ama":"Anastos M, Boyadzhiyska S, Rathke S, Rué J. On the chromatic number of powers of subdivisions of graphs. <i>Discrete Applied Mathematics</i>. 2025;360:506-511. doi:<a href=\"https://doi.org/10.1016/j.dam.2024.10.002\">10.1016/j.dam.2024.10.002</a>","short":"M. Anastos, S. Boyadzhiyska, S. Rathke, J. Rué, Discrete Applied Mathematics 360 (2025) 506–511."},"corr_author":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","isi":1,"OA_place":"publisher","project":[{"call_identifier":"H2020","name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","grant_number":"101034413"}],"oa":1,"article_type":"original","file":[{"date_updated":"2025-01-13T09:25:59Z","file_name":"2025_DiscreteApplMath_Anastos.pdf","access_level":"open_access","creator":"dernst","success":1,"file_id":"18836","checksum":"bd20a13e56b3ea01daf5e7aca5247c60","relation":"main_file","file_size":441060,"content_type":"application/pdf","date_created":"2025-01-13T09:25:59Z"}],"OA_type":"hybrid","intvolume":"       360","publisher":"Elsevier","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"type":"journal_article","article_processing_charge":"Yes (in subscription journal)","volume":360,"date_created":"2024-10-27T23:01:44Z","abstract":[{"text":"For a given graph G=(V,E), we define its \\emph{nth subdivision} as the graph obtained from G by replacing every edge by a path of length n. We also define the \\emph{mth power} of G as the graph on vertex set V where we connect every pair of vertices at distance at most m in G. In this paper, we study the chromatic number of powers of subdivisions of graphs and resolve the case m=n asymptotically. In particular, our result confirms a conjecture of Mozafari-Nia and Iradmusa in the case m=n=3 in a strong sense.","lang":"eng"}],"fulldoi":"https://doi.org/10.1016/j.dam.2024.10.002","day":"15","date_updated":"2025-04-14T07:54:56Z","status":"public","department":[{"_id":"MaKw"}],"month":"01","language":[{"iso":"eng"}],"has_accepted_license":"1","acknowledgement":"This work was initiated at the annual workshop of the Combinatorics and Graph Theory group of Freie Universität Berlin in Wilhelmsaue in September 2023. The authors would like to thank the institution for enabling this research. Finally, the fourth author would like to thank Tibor Szabó and the Combinatorics and Graph Theory group at Freie Universität Berlin for their hospitality during the research visit. Additionally, we thank Moharram Iradmusa for bringing the papers [5], [7] to our attention. Finally, we thank the anonymous referees for their suggestions on the manuscript, which have improved the quality of the document.\r\nM.A.: This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 101034413 .\r\nS.B.: The research leading to these results was supported by EPSRC, UK, grant no. EP/V048287/1. There are no additional data beyond that contained within the main manuscript.\r\nS.R.: Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany’s Excellence Strategy – The Berlin Mathematics Research Center MATH+ (EXC-2046/1, project ID: 390685689).\r\nJ.R. acknowledges the support of the Grant PID2020-113082GB-I00 funded by MICIU/AEI/10.13039/501100011033, Spain, and the Severo Ochoa and María de Maeztu Program for Centers and Units of Excellence in R&D, Spain (CEX2020-001084-M).","_id":"18478","oa_version":"Published Version","external_id":{"arxiv":["2404.05542"],"isi":["001343647000001"]},"scopus_import":"1","author":[{"first_name":"Michael","id":"0b2a4358-bb35-11ec-b7b9-e3279b593dbb","full_name":"Anastos, Michael","last_name":"Anastos"},{"last_name":"Boyadzhiyska","full_name":"Boyadzhiyska, Simona","first_name":"Simona"},{"full_name":"Rathke, Silas","first_name":"Silas","last_name":"Rathke"},{"first_name":"Juanjo","full_name":"Rué, Juanjo","last_name":"Rué"}],"publication":"Discrete Applied Mathematics","file_date_updated":"2025-01-13T09:25:59Z","date_published":"2025-01-15T00:00:00Z","arxiv":1,"title":"On the chromatic number of powers of subdivisions of graphs","publication_identifier":{"issn":["0166-218X"]}},{"oa_version":"None","_id":"18529","scopus_import":"1","author":[{"first_name":"Yichao","full_name":"Zhang, Yichao","last_name":"Zhang"},{"full_name":"Wang, Jiasheng","last_name":"Wang","first_name":"Jiasheng"},{"last_name":"Wen","first_name":"Guanghui","full_name":"Wen, Guanghui"},{"last_name":"Guan","first_name":"Jihong","full_name":"Guan, Jihong"},{"last_name":"Zhou","first_name":"Shuigeng","full_name":"Zhou, Shuigeng"},{"full_name":"Chen, Guanrong","first_name":"Guanrong","last_name":"Chen"},{"last_name":"Chatterjee","first_name":"Krishnendu","full_name":"Chatterjee, Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X"},{"full_name":"Perc, Matjaz","last_name":"Perc","first_name":"Matjaz"}],"publication":"IEEE Transactions on Network Science and Engineering","external_id":{"isi":["001385382200040"]},"date_published":"2025-01-01T00:00:00Z","publication_identifier":{"eissn":["2327-4697"]},"title":"Limitation of time promotes cooperation in structured collaboration systems","article_processing_charge":"No","type":"journal_article","volume":12,"date_created":"2024-11-10T23:02:00Z","date_updated":"2025-02-27T12:35:48Z","day":"01","fulldoi":"https://doi.org/10.1109/TNSE.2024.3481434","abstract":[{"lang":"eng","text":"Temporal networks are obtained from time-dependent interactions among individuals, whereas the interactions can be emails, phone calls, face-to-face meetings, or work collaboration. In this article, a temporal game framework is established, in which interactions among rational individuals are embedded into two-player games in a time-dependent manner. This allows studying the time-dependent complexity and variability of interactions, and the way they affect prosocial behaviors. Based on this simple mathematical model, it is found that the level of cooperation is promoted when the time of collaboration is equally limited for every individual. This observation is confirmed by a series of systematic human experiments on over 1,400 subjects, forming a foundation for comprehensively describing human temporal interactions in collaboration. The research results reveal an important incentive for human cooperation, leading to a better understanding of a fascinating aspect of human nature in society."}],"month":"01","language":[{"iso":"eng"}],"status":"public","department":[{"_id":"KrCh"}],"isi":1,"article_type":"original","issue":"1","publisher":"IEEE","OA_type":"closed access","intvolume":"        12","quality_controlled":"1","page":"4-12","year":"2025","doi":"10.1109/TNSE.2024.3481434","citation":{"ista":"Zhang Y, Wang J, Wen G, Guan J, Zhou S, Chen G, Chatterjee K, Perc M. 2025. Limitation of time promotes cooperation in structured collaboration systems. IEEE Transactions on Network Science and Engineering. 12(1), 4–12.","ieee":"Y. Zhang <i>et al.</i>, “Limitation of time promotes cooperation in structured collaboration systems,” <i>IEEE Transactions on Network Science and Engineering</i>, vol. 12, no. 1. IEEE, pp. 4–12, 2025.","apa":"Zhang, Y., Wang, J., Wen, G., Guan, J., Zhou, S., Chen, G., … Perc, M. (2025). Limitation of time promotes cooperation in structured collaboration systems. <i>IEEE Transactions on Network Science and Engineering</i>. IEEE. <a href=\"https://doi.org/10.1109/TNSE.2024.3481434\">https://doi.org/10.1109/TNSE.2024.3481434</a>","chicago":"Zhang, Yichao, Jiasheng Wang, Guanghui Wen, Jihong Guan, Shuigeng Zhou, Guanrong Chen, Krishnendu Chatterjee, and Matjaz Perc. “Limitation of Time Promotes Cooperation in Structured Collaboration Systems.” <i>IEEE Transactions on Network Science and Engineering</i>. IEEE, 2025. <a href=\"https://doi.org/10.1109/TNSE.2024.3481434\">https://doi.org/10.1109/TNSE.2024.3481434</a>.","mla":"Zhang, Yichao, et al. “Limitation of Time Promotes Cooperation in Structured Collaboration Systems.” <i>IEEE Transactions on Network Science and Engineering</i>, vol. 12, no. 1, IEEE, 2025, pp. 4–12, doi:<a href=\"https://doi.org/10.1109/TNSE.2024.3481434\">10.1109/TNSE.2024.3481434</a>.","ama":"Zhang Y, Wang J, Wen G, et al. Limitation of time promotes cooperation in structured collaboration systems. <i>IEEE Transactions on Network Science and Engineering</i>. 2025;12(1):4-12. doi:<a href=\"https://doi.org/10.1109/TNSE.2024.3481434\">10.1109/TNSE.2024.3481434</a>","short":"Y. Zhang, J. Wang, G. Wen, J. Guan, S. Zhou, G. Chen, K. Chatterjee, M. Perc, IEEE Transactions on Network Science and Engineering 12 (2025) 4–12."},"publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"short":"M. Verma, A. Kumar, V.K. Thakur, A. Maurya, S. Kumar, S. Singh, S.K. Srivastav, Journal of Sol-Gel Science and Technology 113 (2025) 356–373.","ama":"Verma M, Kumar A, Thakur VK, et al. Efficient and rapid sunlight-driven photocatalytic degradation of methylene blue dye using multiferroic BiFeO3 nanoparticles. <i>Journal of Sol-Gel Science and Technology</i>. 2025;113:356-373. doi:<a href=\"https://doi.org/10.1007/s10971-024-06607-2\">10.1007/s10971-024-06607-2</a>","chicago":"Verma, Madhu, Ajay Kumar, Vijay Kumar Thakur, Akanksha Maurya, Sachin Kumar, Saurabh Singh, and Simant Kumar Srivastav. “Efficient and Rapid Sunlight-Driven Photocatalytic Degradation of Methylene Blue Dye Using Multiferroic BiFeO3 Nanoparticles.” <i>Journal of Sol-Gel Science and Technology</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1007/s10971-024-06607-2\">https://doi.org/10.1007/s10971-024-06607-2</a>.","mla":"Verma, Madhu, et al. “Efficient and Rapid Sunlight-Driven Photocatalytic Degradation of Methylene Blue Dye Using Multiferroic BiFeO3 Nanoparticles.” <i>Journal of Sol-Gel Science and Technology</i>, vol. 113, Springer Nature, 2025, pp. 356–73, doi:<a href=\"https://doi.org/10.1007/s10971-024-06607-2\">10.1007/s10971-024-06607-2</a>.","ista":"Verma M, Kumar A, Thakur VK, Maurya A, Kumar S, Singh S, Srivastav SK. 2025. Efficient and rapid sunlight-driven photocatalytic degradation of methylene blue dye using multiferroic BiFeO3 nanoparticles. Journal of Sol-Gel Science and Technology. 113, 356–373.","ieee":"M. Verma <i>et al.</i>, “Efficient and rapid sunlight-driven photocatalytic degradation of methylene blue dye using multiferroic BiFeO3 nanoparticles,” <i>Journal of Sol-Gel Science and Technology</i>, vol. 113. Springer Nature, pp. 356–373, 2025.","apa":"Verma, M., Kumar, A., Thakur, V. K., Maurya, A., Kumar, S., Singh, S., &#38; Srivastav, S. K. (2025). Efficient and rapid sunlight-driven photocatalytic degradation of methylene blue dye using multiferroic BiFeO3 nanoparticles. <i>Journal of Sol-Gel Science and Technology</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s10971-024-06607-2\">https://doi.org/10.1007/s10971-024-06607-2</a>"},"publication_status":"published","page":"356-373","year":"2025","doi":"10.1007/s10971-024-06607-2","quality_controlled":"1","publisher":"Springer Nature","intvolume":"       113","OA_type":"closed access","article_type":"original","isi":1,"status":"public","department":[{"_id":"MaIb"}],"month":"02","language":[{"iso":"eng"}],"fulldoi":"https://doi.org/10.1007/s10971-024-06607-2","abstract":[{"text":"The current investigation presents a facile and cost-effective sol-gel approach for the synthesis of phase-pure multiferroic bismuth ferrite (BiFeO3) nanoparticles (BFO NPs) by using propylene glycol as a complexing agent, intended for use as a photocatalyst to efficiently degrade organic dyes in aqueous solutions under natural sunlight. Characterization techniques, including thermogravimetric analysis (TGA), Fourier transform infrared spectroscopy (FT-IR), and X-ray diffraction (XRD), elucidated a plausible reaction pathway for the formation of phase-pure BFO NPs. Rietveld refinement of the XRD data, in conjunction with transmission electron microscopy (TEM) and Raman spectroscopy, confirmed the synthesis of single-phase BFO NPs at 400 °C, displaying a space group of R3c and an average crystallite size of 25 nm. UV–visible diffuse reflectance spectroscopy revealed an absorption cut-off wavelength near 590 nm, corresponding to a band gap of 2.08 eV, indicating the capability of BFO NPs to absorb visible light within the 400–590 nm range. BFO NPs have shown efficient and rapid photocatalytic degradation of methylene blue (MB) in acidic, neutral, and basic pH conditions under natural sunlight. This is attributed to the intrinsic ferroelectric and ferromagnetic ordering present in synthesized BFO NPs which facilitates the separation and migration of photoinduced charges through band bending phenomena at the interface.","lang":"eng"}],"day":"01","date_updated":"2025-05-19T14:00:43Z","date_created":"2024-11-17T23:01:47Z","volume":113,"type":"journal_article","article_processing_charge":"No","publication_identifier":{"eissn":["1573-4846"],"issn":["0928-0707"]},"title":"Efficient and rapid sunlight-driven photocatalytic degradation of methylene blue dye using multiferroic BiFeO3 nanoparticles","date_published":"2025-02-01T00:00:00Z","scopus_import":"1","publication":"Journal of Sol-Gel Science and Technology","author":[{"full_name":"Verma, Madhu","last_name":"Verma","first_name":"Madhu"},{"first_name":"Ajay","last_name":"Kumar","full_name":"Kumar, Ajay"},{"last_name":"Thakur","first_name":"Vijay Kumar","full_name":"Thakur, Vijay Kumar"},{"full_name":"Maurya, Akanksha","last_name":"Maurya","first_name":"Akanksha"},{"last_name":"Kumar","first_name":"Sachin","full_name":"Kumar, Sachin"},{"full_name":"Singh, Saurabh","id":"12d625da-9cb3-11ed-9667-af09d37d3f0a","first_name":"Saurabh","last_name":"Singh","orcid":"0000-0003-2209-5269"},{"last_name":"Srivastav","first_name":"Simant Kumar","full_name":"Srivastav, Simant Kumar"}],"external_id":{"isi":["001348590700001"]},"_id":"18558","acknowledgement":"Simant Kumar Srivastav greatly acknowledges the University Grant Commission (UGC), New Delhi, India for providing BSR start-up grant to carry out this research work.\r\nThis research was supported by start-up grant of the University Grant Commission (UGC), New Delhi, India through project no F-30-500/2019 (BSR).","oa_version":"None"},{"ddc":["514","510"],"quality_controlled":"1","year":"2025","doi":"10.1007/s12346-024-01144-3","ec_funded":1,"publication_status":"published","citation":{"ieee":"M. Lipiński, K. Mischaikow, and M. Mrozek, “Morse predecomposition of an invariant set,” <i>Qualitative Theory of Dynamical Systems</i>, vol. 24, no. 1. Springer Nature, 2025.","apa":"Lipiński, M., Mischaikow, K., &#38; Mrozek, M. (2025). Morse predecomposition of an invariant set. <i>Qualitative Theory of Dynamical Systems</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s12346-024-01144-3\">https://doi.org/10.1007/s12346-024-01144-3</a>","ista":"Lipiński M, Mischaikow K, Mrozek M. 2025. Morse predecomposition of an invariant set. Qualitative Theory of Dynamical Systems. 24(1), 5.","mla":"Lipiński, Michał, et al. “Morse Predecomposition of an Invariant Set.” <i>Qualitative Theory of Dynamical Systems</i>, vol. 24, no. 1, 5, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1007/s12346-024-01144-3\">10.1007/s12346-024-01144-3</a>.","chicago":"Lipiński, Michał, Konstantin Mischaikow, and Marian Mrozek. “Morse Predecomposition of an Invariant Set.” <i>Qualitative Theory of Dynamical Systems</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1007/s12346-024-01144-3\">https://doi.org/10.1007/s12346-024-01144-3</a>.","short":"M. Lipiński, K. Mischaikow, M. Mrozek, Qualitative Theory of Dynamical Systems 24 (2025).","ama":"Lipiński M, Mischaikow K, Mrozek M. Morse predecomposition of an invariant set. <i>Qualitative Theory of Dynamical Systems</i>. 2025;24(1). doi:<a href=\"https://doi.org/10.1007/s12346-024-01144-3\">10.1007/s12346-024-01144-3</a>"},"corr_author":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","isi":1,"OA_place":"publisher","oa":1,"project":[{"call_identifier":"H2020","grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","name":"IST-BRIDGE: International postdoctoral program"}],"article_type":"original","article_number":"5","file":[{"checksum":"73309a57cc798d696caa57b6aa1467d8","file_id":"18595","success":1,"access_level":"open_access","creator":"mlipinsk","file_name":"2025_predecomposition.pdf","date_updated":"2024-11-28T06:52:38Z","date_created":"2024-11-28T06:52:38Z","content_type":"application/pdf","file_size":1483668,"relation":"main_file"}],"intvolume":"        24","OA_type":"hybrid","publisher":"Springer Nature","issue":"1","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"article_processing_charge":"Yes (via OA deal)","type":"journal_article","date_created":"2024-11-24T23:01:47Z","volume":24,"abstract":[{"lang":"eng","text":"Motivated by the study of recurrent orbits and dynamics within a Morse set of a Morse decomposition we introduce the concept of Morse predecomposition of an isolated invariant set within the setting of both combinatorial and classical dynamical systems. While Morse decomposition summarizes solely the gradient part of a dynamical system, the developed generalization extends to the recurrent component as well. In particular, a chain recurrent set, which is indecomposable in terms of Morse decomposition, can be represented more finely in the Morse predecomposition framework. This generalization is achieved by forgoing the poset structure inherent to Morse decomposition and relaxing the notion of connection between Morse sets (elements of Morse decomposition) in favor of what we term ’links’. We prove that a Morse decomposition is a special case of Morse predecomposition indexed by a poset. Additionally, we show how a Morse predecomposition may be condensed back to retrieve a Morse decomposition."}],"fulldoi":"https://doi.org/10.1007/s12346-024-01144-3","date_updated":"2025-04-14T07:54:56Z","day":"01","department":[{"_id":"UlWa"}],"status":"public","month":"02","language":[{"iso":"eng"}],"has_accepted_license":"1","acknowledgement":"M.L. acknowledge support by the Dioscuri program initiated by the Max Planck Society, jointly managed with the National Science Centre (Poland), and mutually funded by the Polish Ministry of Science and Higher Education and the German Federal Ministry of Education and Research. M.L. also acknowledges that this project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413. Research of M.M. is partially supported by the Polish National Science Center under Opus Grant No. 2019/35/B/ST1/00874. The work of K.M. was partially supported by the National Science Foundation under awards DMS-1839294 and HDR TRIPODS award CCF-1934924, DARPA contract HR0011-16-2-0033, National Institutes of Health award R01 GM126555, Air Force Office of Scientific Research under award numbers FA9550-23-1-0011, AWD00010853-MOD002 and MURI FA9550-23-1-0400. K.M. was also supported by a grant from the Simons Foundation. Open access funding provided by Institute of Science and Technology (IST Austria). ","_id":"18580","oa_version":"Published Version","external_id":{"isi":["001356000500005"],"arxiv":["2312.08013"]},"author":[{"id":"dfffb474-4317-11ee-8f5c-fe3fc95a425e","last_name":"Lipiński","first_name":"Michał","full_name":"Lipiński, Michał","orcid":"0000-0001-9789-9750"},{"last_name":"Mischaikow","full_name":"Mischaikow, Konstantin","first_name":"Konstantin"},{"first_name":"Marian","last_name":"Mrozek","full_name":"Mrozek, Marian"}],"scopus_import":"1","publication":"Qualitative Theory of Dynamical Systems","file_date_updated":"2024-11-28T06:52:38Z","date_published":"2025-02-01T00:00:00Z","arxiv":1,"title":"Morse predecomposition of an invariant set","publication_identifier":{"eissn":["1662-3592"],"issn":["1575-5460"]}},{"file":[{"content_type":"application/pdf","relation":"main_file","file_size":4443183,"date_created":"2025-04-16T09:02:05Z","file_name":"2025_PlantComm_Wei.pdf","date_updated":"2025-04-16T09:02:05Z","checksum":"7b0e4511e43cc0da06730c3edb7c1167","file_id":"19575","success":1,"access_level":"open_access","creator":"dernst"}],"OA_type":"gold","intvolume":"         6","issue":"1","publisher":"Elsevier","isi":1,"OA_place":"publisher","oa":1,"pmid":1,"article_type":"original","article_number":"101181","publication_status":"published","citation":{"chicago":"Wei, H, H Zhu, W Ying, H Janssens, M Kvasnica, JM Winne, Y Gao, et al. “Structural Insights into Brassinosteroid Export Mediated by the Arabidopsis ABC Transporter ABCB1.” <i>Plant Communications</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.xplc.2024.101181\">https://doi.org/10.1016/j.xplc.2024.101181</a>.","mla":"Wei, H., et al. “Structural Insights into Brassinosteroid Export Mediated by the Arabidopsis ABC Transporter ABCB1.” <i>Plant Communications</i>, vol. 6, no. 1, 101181, Elsevier, 2025, doi:<a href=\"https://doi.org/10.1016/j.xplc.2024.101181\">10.1016/j.xplc.2024.101181</a>.","ista":"Wei H, Zhu H, Ying W, Janssens H, Kvasnica M, Winne J, Gao Y, Friml J, Ma Q, Tan S, Liu X, Russinova E, Sun L. 2025. Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1. Plant Communications. 6(1), 101181.","apa":"Wei, H., Zhu, H., Ying, W., Janssens, H., Kvasnica, M., Winne, J., … Sun, L. (2025). Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1. <i>Plant Communications</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.xplc.2024.101181\">https://doi.org/10.1016/j.xplc.2024.101181</a>","ieee":"H. Wei <i>et al.</i>, “Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1,” <i>Plant Communications</i>, vol. 6, no. 1. Elsevier, 2025.","short":"H. Wei, H. Zhu, W. Ying, H. Janssens, M. Kvasnica, J. Winne, Y. Gao, J. Friml, Q. Ma, S. Tan, X. Liu, E. Russinova, L. Sun, Plant Communications 6 (2025).","ama":"Wei H, Zhu H, Ying W, et al. Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1. <i>Plant Communications</i>. 2025;6(1). doi:<a href=\"https://doi.org/10.1016/j.xplc.2024.101181\">10.1016/j.xplc.2024.101181</a>"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["580"],"quality_controlled":"1","year":"2025","doi":"10.1016/j.xplc.2024.101181","file_date_updated":"2025-04-16T09:02:05Z","date_published":"2025-01-13T00:00:00Z","title":"Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1","publication_identifier":{"issn":["2590-3462"]},"acknowledgement":"We thank the Cryo-EM Center of the University of Science and Technology of China for the EM facility support. We thank Yaowei Wang, Yongming Luo, and Nemanja Vukašinović (VIB-UGhent, Belgium) for useful discussions and technical support. L.S. is supported by an Outstanding Young Scholar Award from the Qiu Shi Science and Technologies Foundation and a Young Scholar Award from the Cyrus Tang Foundation. No conflict of interest is declared.","_id":"18619","oa_version":"Published Version","external_id":{"pmid":["39497419"],"isi":["001416757300001"]},"author":[{"first_name":"H","last_name":"Wei","full_name":"Wei, H"},{"full_name":"Zhu, H","last_name":"Zhu","first_name":"H"},{"full_name":"Ying, W","last_name":"Ying","first_name":"W"},{"full_name":"Janssens, H","last_name":"Janssens","first_name":"H"},{"full_name":"Kvasnica, M","last_name":"Kvasnica","first_name":"M"},{"full_name":"Winne, JM","first_name":"JM","last_name":"Winne"},{"first_name":"Y","full_name":"Gao, Y","last_name":"Gao"},{"orcid":"0000-0002-8302-7596","full_name":"Friml, Jiří","first_name":"Jiří","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Q","full_name":"Ma, Q","last_name":"Ma"},{"last_name":"Tan","first_name":"S","full_name":"Tan, S"},{"full_name":"Liu, X","first_name":"X","last_name":"Liu"},{"last_name":"Russinova","first_name":"E","full_name":"Russinova, E"},{"first_name":"L","full_name":"Sun, L","last_name":"Sun"}],"scopus_import":"1","publication":"Plant Communications","abstract":[{"lang":"eng","text":"Brassinosteroids (BRs) are steroidal phytohormones indispensable for plant growth, development, and responses to environmental stresses. The export of bioactive BRs to the apoplast is essential for BR signalling initiation, which requires binding of BR molecule to the extracellular domains of the plasma membrane-localized receptor complex. We have previously shown that the Arabidopsis thaliana ATP-binding cassette (ABC) transporter, ABCB19, functions as a BR exporter, and together with its close homologue, ABCB1, positively regulate BR signalling. Here, we demonstrate that ABCB1 is another BR transporter. The ATP hydrolysis activity of ABCB1 was stimulated by bioactive BRs, and its transport activity was confirmed in proteoliposomes and protoplasts. Structures of ABCB1 in substrate-unbound (apo), brassinolide (BL)-bound, and ATP plus BL-bound states were determined. In the BL-bound structure, BL was bound to the hydrophobic cavity formed by the transmembrane domain, and triggered local conformational changes. Together, our data provide additional insights into the ABC transporter-mediated BR export."}],"fulldoi":"https://doi.org/10.1016/j.xplc.2024.101181","date_updated":"2025-05-19T14:02:01Z","day":"13","department":[{"_id":"JiFr"}],"status":"public","month":"01","language":[{"iso":"eng"}],"has_accepted_license":"1","DOAJ_listed":"1","type":"journal_article","tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","image":"/images/cc_by_nc_nd.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)"},"article_processing_charge":"Yes","volume":6,"date_created":"2024-12-04T11:21:16Z"},{"OA_type":"green","intvolume":"       461","publisher":"Elsevier","article_type":"original","article_number":"110055","project":[{"name":"Alpha Shape Theory Extended","_id":"266A2E9E-B435-11E9-9278-68D0E5697425","grant_number":"788183","call_identifier":"H2020"},{"name":"Mathematics, Computer Science","_id":"268116B8-B435-11E9-9278-68D0E5697425","grant_number":"Z00342","call_identifier":"FWF"},{"_id":"2561EBF4-B435-11E9-9278-68D0E5697425","grant_number":"I02979-N35","name":"Persistence and stability of geometric complexes","call_identifier":"FWF"}],"oa":1,"OA_place":"repository","isi":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","publication_status":"published","citation":{"mla":"Edelsbrunner, Herbert, et al. “Order-2 Delaunay Triangulations Optimize Angles.” <i>Advances in Mathematics</i>, vol. 461, 110055, Elsevier, 2025, doi:<a href=\"https://doi.org/10.1016/j.aim.2024.110055\">10.1016/j.aim.2024.110055</a>.","chicago":"Edelsbrunner, Herbert, Alexey Garber, and Morteza Saghafian. “Order-2 Delaunay Triangulations Optimize Angles.” <i>Advances in Mathematics</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.aim.2024.110055\">https://doi.org/10.1016/j.aim.2024.110055</a>.","ieee":"H. Edelsbrunner, A. Garber, and M. Saghafian, “Order-2 Delaunay triangulations optimize angles,” <i>Advances in Mathematics</i>, vol. 461. Elsevier, 2025.","apa":"Edelsbrunner, H., Garber, A., &#38; Saghafian, M. (2025). Order-2 Delaunay triangulations optimize angles. <i>Advances in Mathematics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.aim.2024.110055\">https://doi.org/10.1016/j.aim.2024.110055</a>","ista":"Edelsbrunner H, Garber A, Saghafian M. 2025. Order-2 Delaunay triangulations optimize angles. Advances in Mathematics. 461, 110055.","ama":"Edelsbrunner H, Garber A, Saghafian M. Order-2 Delaunay triangulations optimize angles. <i>Advances in Mathematics</i>. 2025;461. doi:<a href=\"https://doi.org/10.1016/j.aim.2024.110055\">10.1016/j.aim.2024.110055</a>","short":"H. Edelsbrunner, A. Garber, M. Saghafian, Advances in Mathematics 461 (2025)."},"doi":"10.1016/j.aim.2024.110055","year":"2025","ec_funded":1,"quality_controlled":"1","title":"Order-2 Delaunay triangulations optimize angles","publication_identifier":{"eissn":["1090-2082"],"issn":["0001-8708"]},"arxiv":1,"date_published":"2025-02-01T00:00:00Z","external_id":{"arxiv":["2310.18238"],"isi":["001370682500001"]},"author":[{"first_name":"Herbert","full_name":"Edelsbrunner, Herbert","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","last_name":"Edelsbrunner","orcid":"0000-0002-9823-6833"},{"last_name":"Garber","full_name":"Garber, Alexey","first_name":"Alexey"},{"full_name":"Saghafian, Morteza","id":"f86f7148-b140-11ec-9577-95435b8df824","last_name":"Saghafian","first_name":"Morteza"}],"scopus_import":"1","publication":"Advances in Mathematics","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2310.18238"}],"oa_version":"Preprint","acknowledgement":"Work by the first and third authors is partially supported by the European Research Council (ERC), grant no. 788183, by the Wittgenstein Prize, Austrian Science Fund (FWF), grant no. Z 342-N31, and by the DFG Collaborative Research Center TRR 109, Austrian Science Fund (FWF), grant no. I 02979-N35. Work by the second author is partially supported by the Alexander von Humboldt Foundation.","_id":"18626","month":"02","language":[{"iso":"eng"}],"status":"public","department":[{"_id":"HeEd"}],"day":"01","date_updated":"2025-04-15T07:16:53Z","abstract":[{"text":"The local angle property of the (order-1) Delaunay triangulations of a generic set in R2\r\n asserts that the sum of two angles opposite a common edge is less than π. This paper extends this property to higher order and uses it to generalize two classic properties from order-1 to order-2: (1) among the complete level-2 hypertriangulations of a generic point set in R2, the order-2 Delaunay triangulation lexicographically maximizes the sorted angle vector; (2) among the maximal level-2 hypertriangulations of a generic point set in R2, the order-2 Delaunay triangulation is the only one that has the local angle property. We also use our method of establishing (2) to give a new short proof of the angle vector optimality for the (order-1) Delaunay triangulation. For order-1, both properties have been instrumental in numerous applications of Delaunay triangulations, and we expect that their generalization will make order-2 Delaunay triangulations more attractive to applications as well.","lang":"eng"}],"fulldoi":"https://doi.org/10.1016/j.aim.2024.110055","volume":461,"date_created":"2024-12-08T23:01:54Z","article_processing_charge":"No","type":"journal_article"},{"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"article_processing_charge":"Yes (via OA deal)","type":"journal_article","volume":9,"date_created":"2024-12-08T23:01:56Z","day":"01","date_updated":"2025-05-19T14:01:21Z","fulldoi":"https://doi.org/10.1038/s41550-024-02424-3","abstract":[{"text":"Within the established framework of structure formation, galaxies start as systems of low stellar mass and gradually grow into far more massive galaxies. The existence of massive galaxies in the first billion years of the Universe, as suggested by recent observations, seems to challenge this model, as such galaxies would require highly efficient conversion of baryons into stars. An even greater challenge in this epoch is the existence of massive galaxies that have already ceased forming stars. However, robust detections of early massive quiescent galaxies have been challenging due to the coarse wavelength sampling of photometric surveys. Here we report the spectroscopic confirmation with the James Webb Space Telescope of the quiescent galaxy RUBIES-EGS-QG-1 at redshift z = 4.90, 1.2 billion years after the Big Bang. Deep stellar absorption features in the spectrum reveal that the stellar mass of the galaxy of 1011 M⊙ formed in a short 200 Myr burst of star formation, after which star formation activity dropped rapidly and persistently. According to current galaxy formation models, systems with such rapid stellar mass growth and early quenching are too rare to plausibly occur in the small area probed spectroscopically with JWST. Instead, the discovery of RUBIES-EGS-QG-1 implies that early massive quiescent galaxies can be quenched earlier or exhaust gas available for star formation more efficiently than assumed at present.","lang":"eng"}],"has_accepted_license":"1","month":"02","language":[{"iso":"eng"}],"department":[{"_id":"JoMa"}],"status":"public","oa_version":"Published Version","_id":"18631","acknowledgement":"We thank V. Buat, D. Burgarella and J. Zavala for sharing their NOEMA data and constraints on the dust-obscured star formation of RUBIES-EGS-QG-1. This work is partially based on observations carried out under project number W20CK with the IRAM NOEMA Interferometer. IRAM is supported by INSU/CNRS (France), MPG (Germany) and IGN (Spain). We thank C. Lagos for providing measurements from the SHARK simulation. This research was supported by the International Space Science Institute (ISSI) in Bern, through ISSI International Team Project No. 562. M.V.M., J.L. and B.W. acknowledge funding support from NASA through JWST-GO-4233. The Cosmic Dawn Center is funded by the Danish National Research Foundation (Grant No. DNRF140 to G.B., P.A.O. and K.E.W.). This work has received funding from the Swiss State Secretariat for Education, Research and Innovation (Contract No. MB22.00072) and the Swiss National Science Foundation (Project Grant No. 200020_207349 to P.A.O.). Support for this work was provided by the Brinson Foundation through a Brinson Prize Fellowship grant (D.J.S.). K.A.S. is a NHFP Hubble Fellow. Support for this work was provided by NASA through the NASA Hubble Fellowship Grant No. HST-HF2-51515.001-A awarded by the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Incorporated, under NASA contract NAS 5-26555 (R.P.N.). This work is based on observations made with the NASA/ESA/CSA JWST. The data were obtained from the Mikulski Archive for Space Telescopes at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127 for JWST. The observations in this work are associated with programmes ERS-1345, GO-2234, DDT-2750 and GO-4233. We gratefully acknowledge the CEERS and DDT-2750 teams for developing their observing programme with a zero-exclusive-access period. Open access funding provided by Max Planck Society.","scopus_import":"1","author":[{"full_name":"De Graaff, Anna","first_name":"Anna","last_name":"De Graaff"},{"first_name":"David J.","full_name":"Setton, David J.","last_name":"Setton"},{"last_name":"Brammer","full_name":"Brammer, Gabriel","first_name":"Gabriel"},{"last_name":"Cutler","full_name":"Cutler, Sam","first_name":"Sam"},{"full_name":"Suess, Katherine A.","first_name":"Katherine A.","last_name":"Suess"},{"first_name":"Ivo","full_name":"Labbé, Ivo","last_name":"Labbé"},{"first_name":"Joel","last_name":"Leja","full_name":"Leja, Joel"},{"full_name":"Weibel, Andrea","last_name":"Weibel","first_name":"Andrea"},{"last_name":"Maseda","full_name":"Maseda, Michael V.","first_name":"Michael V."},{"last_name":"Whitaker","full_name":"Whitaker, Katherine E.","first_name":"Katherine E."},{"full_name":"Bezanson, Rachel","first_name":"Rachel","last_name":"Bezanson"},{"full_name":"Boogaard, Leindert A.","first_name":"Leindert A.","last_name":"Boogaard"},{"first_name":"Nikko J.","last_name":"Cleri","full_name":"Cleri, Nikko J."},{"last_name":"De Lucia","full_name":"De Lucia, Gabriella","first_name":"Gabriella"},{"first_name":"Marijn","last_name":"Franx","full_name":"Franx, Marijn"},{"full_name":"Greene, Jenny E.","first_name":"Jenny E.","last_name":"Greene"},{"first_name":"Michaela","full_name":"Hirschmann, Michaela","last_name":"Hirschmann"},{"last_name":"Matthee","first_name":"Jorryt J","full_name":"Matthee, Jorryt J","id":"7439a258-f3c0-11ec-9501-9df22fe06720","orcid":"0000-0003-2871-127X"},{"full_name":"Mcconachie, Ian","last_name":"Mcconachie","first_name":"Ian"},{"first_name":"Rohan P.","last_name":"Naidu","full_name":"Naidu, Rohan P."},{"full_name":"Oesch, Pascal A.","last_name":"Oesch","first_name":"Pascal A."},{"first_name":"Sedona H.","full_name":"Price, Sedona H.","last_name":"Price"},{"first_name":"Hans Walter","full_name":"Rix, Hans Walter","last_name":"Rix"},{"first_name":"Francesco","full_name":"Valentino, Francesco","last_name":"Valentino"},{"last_name":"Wang","full_name":"Wang, Bingjie","first_name":"Bingjie"},{"last_name":"Williams","full_name":"Williams, Christina C.","first_name":"Christina C."}],"publication":"Nature Astronomy","external_id":{"pmid":["39990236"],"isi":["001420347200001"]},"date_published":"2025-02-01T00:00:00Z","file_date_updated":"2025-04-16T08:53:59Z","publication_identifier":{"eissn":["2397-3366"]},"title":"Efficient formation of a massive quiescent galaxy at redshift 4.9","quality_controlled":"1","ddc":["520"],"page":"280-292","doi":"10.1038/s41550-024-02424-3","year":"2025","citation":{"short":"A. De Graaff, D.J. Setton, G. Brammer, S. Cutler, K.A. Suess, I. Labbé, J. Leja, A. Weibel, M.V. Maseda, K.E. Whitaker, R. Bezanson, L.A. Boogaard, N.J. Cleri, G. De Lucia, M. Franx, J.E. Greene, M. Hirschmann, J.J. Matthee, I. Mcconachie, R.P. Naidu, P.A. Oesch, S.H. Price, H.W. Rix, F. Valentino, B. Wang, C.C. Williams, Nature Astronomy 9 (2025) 280–292.","ama":"De Graaff A, Setton DJ, Brammer G, et al. Efficient formation of a massive quiescent galaxy at redshift 4.9. <i>Nature Astronomy</i>. 2025;9:280-292. doi:<a href=\"https://doi.org/10.1038/s41550-024-02424-3\">10.1038/s41550-024-02424-3</a>","chicago":"De Graaff, Anna, David J. Setton, Gabriel Brammer, Sam Cutler, Katherine A. Suess, Ivo Labbé, Joel Leja, et al. “Efficient Formation of a Massive Quiescent Galaxy at Redshift 4.9.” <i>Nature Astronomy</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41550-024-02424-3\">https://doi.org/10.1038/s41550-024-02424-3</a>.","mla":"De Graaff, Anna, et al. “Efficient Formation of a Massive Quiescent Galaxy at Redshift 4.9.” <i>Nature Astronomy</i>, vol. 9, Springer Nature, 2025, pp. 280–92, doi:<a href=\"https://doi.org/10.1038/s41550-024-02424-3\">10.1038/s41550-024-02424-3</a>.","ista":"De Graaff A, Setton DJ, Brammer G, Cutler S, Suess KA, Labbé I, Leja J, Weibel A, Maseda MV, Whitaker KE, Bezanson R, Boogaard LA, Cleri NJ, De Lucia G, Franx M, Greene JE, Hirschmann M, Matthee JJ, Mcconachie I, Naidu RP, Oesch PA, Price SH, Rix HW, Valentino F, Wang B, Williams CC. 2025. Efficient formation of a massive quiescent galaxy at redshift 4.9. Nature Astronomy. 9, 280–292.","ieee":"A. De Graaff <i>et al.</i>, “Efficient formation of a massive quiescent galaxy at redshift 4.9,” <i>Nature Astronomy</i>, vol. 9. Springer Nature, pp. 280–292, 2025.","apa":"De Graaff, A., Setton, D. J., Brammer, G., Cutler, S., Suess, K. A., Labbé, I., … Williams, C. C. (2025). Efficient formation of a massive quiescent galaxy at redshift 4.9. <i>Nature Astronomy</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41550-024-02424-3\">https://doi.org/10.1038/s41550-024-02424-3</a>"},"publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"OA_place":"publisher","isi":1,"article_type":"original","pmid":1,"file":[{"date_created":"2025-04-16T08:53:59Z","file_size":2034513,"relation":"main_file","content_type":"application/pdf","success":1,"access_level":"open_access","creator":"dernst","checksum":"fb9109951dfe72f08c04c72cd7cfba69","file_id":"19574","date_updated":"2025-04-16T08:53:59Z","file_name":"2025_NatureAstronomy_deGraaff.pdf"}],"publisher":"Springer Nature","OA_type":"hybrid","intvolume":"         9"},{"article_processing_charge":"Yes (via OA deal)","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"type":"journal_article","date_created":"2024-12-08T23:01:56Z","volume":298,"day":"01","date_updated":"2025-04-14T07:27:49Z","fulldoi":"https://doi.org/10.1002/mana.202400169","abstract":[{"text":"For an arbitrary dimension (Formula presented.), we study: the polyharmonic Gaussian field (Formula presented.) on the discrete torus (Formula presented.), that is the random field whose law on (Formula presented.) given by (Formula presented.) where (Formula presented.) is the Lebesgue measure and (Formula presented.) is the discrete Laplacian; the associated discrete Liouville quantum gravity (LQG) measure associated with it, that is, the random measure on (Formula presented.) (Formula presented.) where (Formula presented.) is a regularity parameter. As (Formula presented.), we prove convergence of the fields (Formula presented.) to the polyharmonic Gaussian field (Formula presented.) on the continuous torus (Formula presented.), as well as convergence of the random measures (Formula presented.) to the LQG measure (Formula presented.) on (Formula presented.), for all (Formula presented.). ","lang":"eng"}],"has_accepted_license":"1","language":[{"iso":"eng"}],"month":"01","department":[{"_id":"JaMa"}],"status":"public","oa_version":"Published Version","_id":"18632","acknowledgement":"KTS is grateful to Christoph Thiele for valuable discussions and helpful references. LDS is grateful to Nathanaël Berestycki for valuable discussions on Gaussian Multiplicative Chaoses. The authors are grateful to an anonymous reviewer for suggestions which improved the presentation.\r\nThe authors gratefully acknowledge funding by the Deutsche Forschungsgemeinschaft through the project ‘Random Riemannian Geometry’ within the SPP 2265 ‘Random Geometric Systems.'\r\nLDS gratefully acknowledges financial support from the European Research Council (grant agreement No. 716117, awarded to J. Maas) and from the Austrian Science Fund (FWF). His research was funded by the Austrian Science Fund (FWF) project 10.55776/F65 and project 10.55776/ESP208.\r\nRH, EK, and KTS gratefully acknowledge funding by the Hausdorff Center for Mathematics (project ID 390685813), and through project B03 within the CRC 1060 (project ID 211504053). RH and KTS also gratefully acknowledges financial support from the European Research Council through the ERC AdG ‘RicciBounds’ (grant agreement 694405).\r\nOpen access funding enabled and organized by Projekt DEAL.","publication":"Mathematische Nachrichten","author":[{"orcid":"0000-0002-9881-6870","last_name":"Dello Schiavo","full_name":"Dello Schiavo, Lorenzo","id":"ECEBF480-9E4F-11EA-B557-B0823DDC885E","first_name":"Lorenzo"},{"first_name":"Ronan","last_name":"Herry","full_name":"Herry, Ronan"},{"full_name":"Kopfer, Eva","first_name":"Eva","last_name":"Kopfer"},{"first_name":"Karl Theodor","last_name":"Sturm","full_name":"Sturm, Karl Theodor"}],"scopus_import":"1","external_id":{"isi":["001366948500001"],"arxiv":["2302.02963"]},"arxiv":1,"date_published":"2025-01-01T00:00:00Z","file_date_updated":"2025-01-13T10:34:42Z","publication_identifier":{"issn":["0025-584X"],"eissn":["1522-2616"]},"title":"Polyharmonic fields and Liouville quantum gravity measures on tori of arbitrary dimension: From discrete to continuous","quality_controlled":"1","ddc":["510"],"page":"244-281","ec_funded":1,"doi":"10.1002/mana.202400169","year":"2025","citation":{"ama":"Dello Schiavo L, Herry R, Kopfer E, Sturm KT. Polyharmonic fields and Liouville quantum gravity measures on tori of arbitrary dimension: From discrete to continuous. <i>Mathematische Nachrichten</i>. 2025;298(1):244-281. doi:<a href=\"https://doi.org/10.1002/mana.202400169\">10.1002/mana.202400169</a>","short":"L. Dello Schiavo, R. Herry, E. Kopfer, K.T. Sturm, Mathematische Nachrichten 298 (2025) 244–281.","ista":"Dello Schiavo L, Herry R, Kopfer E, Sturm KT. 2025. Polyharmonic fields and Liouville quantum gravity measures on tori of arbitrary dimension: From discrete to continuous. Mathematische Nachrichten. 298(1), 244–281.","ieee":"L. Dello Schiavo, R. Herry, E. Kopfer, and K. T. Sturm, “Polyharmonic fields and Liouville quantum gravity measures on tori of arbitrary dimension: From discrete to continuous,” <i>Mathematische Nachrichten</i>, vol. 298, no. 1. Wiley, pp. 244–281, 2025.","apa":"Dello Schiavo, L., Herry, R., Kopfer, E., &#38; Sturm, K. T. (2025). Polyharmonic fields and Liouville quantum gravity measures on tori of arbitrary dimension: From discrete to continuous. <i>Mathematische Nachrichten</i>. Wiley. <a href=\"https://doi.org/10.1002/mana.202400169\">https://doi.org/10.1002/mana.202400169</a>","chicago":"Dello Schiavo, Lorenzo, Ronan Herry, Eva Kopfer, and Karl Theodor Sturm. “Polyharmonic Fields and Liouville Quantum Gravity Measures on Tori of Arbitrary Dimension: From Discrete to Continuous.” <i>Mathematische Nachrichten</i>. Wiley, 2025. <a href=\"https://doi.org/10.1002/mana.202400169\">https://doi.org/10.1002/mana.202400169</a>.","mla":"Dello Schiavo, Lorenzo, et al. “Polyharmonic Fields and Liouville Quantum Gravity Measures on Tori of Arbitrary Dimension: From Discrete to Continuous.” <i>Mathematische Nachrichten</i>, vol. 298, no. 1, Wiley, 2025, pp. 244–81, doi:<a href=\"https://doi.org/10.1002/mana.202400169\">10.1002/mana.202400169</a>."},"publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"project":[{"name":"Optimal Transport and Stochastic Dynamics","grant_number":"716117","_id":"256E75B8-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"},{"name":"Taming Complexity in Partial Differential Systems","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2","grant_number":"F6504"},{"name":"Configuration Spaces over Non-Smooth Spaces","grant_number":"E208","_id":"34dbf174-11ca-11ed-8bc3-afe9d43d4b9c"}],"OA_place":"publisher","isi":1,"article_type":"original","file":[{"date_updated":"2025-01-13T10:34:42Z","file_name":"2025_MathNachrichten_DelloSchiavo.pdf","creator":"dernst","access_level":"open_access","success":1,"file_id":"18838","checksum":"1dc50d156feb777c86d779fb1c9ac875","file_size":1734511,"relation":"main_file","content_type":"application/pdf","date_created":"2025-01-13T10:34:42Z"}],"issue":"1","publisher":"Wiley","OA_type":"hybrid","intvolume":"       298"},{"date_published":"2025-03-03T00:00:00Z","file_date_updated":"2025-02-28T16:50:39Z","title":"Light-microscopy based connectomic reconstruction of mammalian brain tissue","oa_version":"Published Version","_id":"18697","author":[{"orcid":"0000-0001-8559-3973","last_name":"Danzl","full_name":"Danzl, Johann G","first_name":"Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87"},{"id":"46E28B80-F248-11E8-B48F-1D18A9856A87","last_name":"Lyudchik","full_name":"Lyudchik, Julia","first_name":"Julia"},{"last_name":"Kreuzinger","first_name":"Caroline","id":"382077BA-F248-11E8-B48F-1D18A9856A87","full_name":"Kreuzinger, Caroline"}],"date_updated":"2026-04-28T13:33:34Z","day":"03","fulldoi":"https://doi.org/10.15479/AT:ISTA:18697","abstract":[{"text":"The information-processing capability of the brain’s cellular network depends on the physical wiring pattern between neurons and their molecular and functional characteristics. 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Electrochemical impedance spectroscopy analysis emphasizes material’s excellent structural integrity. This is attributed to the crystalline phases present in the matrix."}],"fulldoi":"https://doi.org/10.1016/j.matlet.2024.137869","date_updated":"2025-05-19T14:05:22Z","day":"01","department":[{"_id":"MaIb"}],"status":"public","month":"03","language":[{"iso":"eng"}],"type":"journal_article","article_processing_charge":"No","volume":382,"date_created":"2024-12-22T23:01:47Z"},{"publication_status":"published","citation":{"chicago":"Shu, Haibo, Mingjun Zhao, Shaoqing Lu, Shanhong Wan, Aziz Genç, Lulu Huang, Maria Ibáñez, Khak Ho Lim, Min Hong, and Yu Liu. “Influence of Surface Engineering on the Transport Properties of Lead Sulfide Nanomaterials.” <i>Journal of Colloid and Interface Science</i>. 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The molecular complexes facilitate the incorporation of Cu into the PbS matrix and leads to the formation of nanoscale defects, dislocations, and strain fields while optimizing the charge carrier transport. The structural modulations enhance the phonon scattering and lead to a significant reduction in lattice thermal conductivity of 0.60 W m−1K−1 at 867 K in the PbS-Cu2S system. Simultaneously, the Cu incorporation improves electrical conductivity by increasing both carrier concentration and mobility with carefully optimized the content of Cu2S molecular complexes. These synergistic modifications yield a peak figure-of-merit (zT) of 1.05 at 867 K for the PbS-1.0 %Cu2S sample, representing an almost twofold enhancement in TE performance compared to pristine PbS. This work highlights the effectiveness of surface treatment in overcoming the intrinsic limitations of PbS-based materials and presents a promising strategy for the development of high-efficiency TE systems.","lang":"eng"}],"fulldoi":"https://doi.org/10.1016/j.jcis.2024.12.067","date_updated":"2025-05-19T14:03:54Z","day":"01","department":[{"_id":"MaIb"}],"status":"public","month":"04","language":[{"iso":"eng"}],"type":"journal_article","article_processing_charge":"No","volume":683,"date_created":"2024-12-29T23:01:56Z","date_published":"2025-04-01T00:00:00Z","title":"Influence of surface engineering on the transport properties of lead sulfide nanomaterials","publication_identifier":{"issn":["0021-9797"],"eissn":["1095-7103"]},"acknowledgement":"Y.L. acknowledges funding from the National Natural Science Foundation of China (NSFC) (Grants No. 22209034), the Innovation and Entrepreneurship Project of Overseas Returnees in Anhui Province (Grant No. 2022LCX002) and the Fundamental Research Funds for the Central Universities (JZ2024HGTB0239). M.I. acknowledges financial support from ISTA and the Werner Siemens Foundation. K.H.L. acknowledges financial support from the National Natural Science Foundation of China (NSFC) (Grant No. 22208293). M.H acknowledges funding from Australian Research Council (FT230100316 and IH200100035) and iLAuNCH, Trailblazer Universities Program. L. H. and S. W. acknowledge the Fundamental Research Funds for the Central Universities (JZ2023HGTA0179, JZ2024HGTA0170).","_id":"18707","oa_version":"None","external_id":{"pmid":["39706089"],"isi":["001393340800001"]},"scopus_import":"1","author":[{"full_name":"Shu, Haibo","last_name":"Shu","first_name":"Haibo"},{"full_name":"Zhao, Mingjun","last_name":"Zhao","first_name":"Mingjun"},{"full_name":"Lu, Shaoqing","last_name":"Lu","first_name":"Shaoqing"},{"full_name":"Wan, Shanhong","last_name":"Wan","first_name":"Shanhong"},{"last_name":"Genç","full_name":"Genç, Aziz","first_name":"Aziz"},{"full_name":"Huang, Lulu","first_name":"Lulu","last_name":"Huang"},{"last_name":"Ibáñez","first_name":"Maria","full_name":"Ibáñez, Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5013-2843"},{"first_name":"Khak Ho","full_name":"Lim, Khak Ho","last_name":"Lim"},{"full_name":"Hong, Min","first_name":"Min","last_name":"Hong"},{"orcid":"0000-0001-7313-6740","first_name":"Yu","last_name":"Liu","id":"2A70014E-F248-11E8-B48F-1D18A9856A87","full_name":"Liu, Yu"}],"publication":"Journal of Colloid and Interface Science"},{"_id":"18712","oa_version":"Published Version","related_material":{"record":[{"status":"public","id":"19876","relation":"used_in_publication"}]},"oa":1,"author":[{"orcid":"0000-0001-6395-386X","id":"455235B8-F248-11E8-B48F-1D18A9856A87","full_name":"Surendranadh, Parvathy","last_name":"Surendranadh","first_name":"Parvathy"},{"last_name":"Sachdeva","first_name":"Himani","full_name":"Sachdeva, Himani"}],"file_date_updated":"2025-01-02T12:30:39Z","date_published":"2025-01-07T00:00:00Z","file":[{"date_updated":"2025-01-02T12:30:27Z","file_name":"Codes.zip","access_level":"open_access","creator":"psurendr","success":1,"file_id":"18722","checksum":"9c5f91876014706990a0728c3675cd2a","file_size":326835,"relation":"main_file","content_type":"application/zip","date_created":"2025-01-02T12:30:27Z"},{"relation":"main_file","file_size":620,"content_type":"text/plain","date_created":"2025-01-02T12:30:39Z","date_updated":"2025-01-02T12:30:39Z","file_name":"ReadMe.txt","creator":"psurendr","access_level":"open_access","success":1,"file_id":"18723","checksum":"47fe98b7cc526e634e42de58f5eae288"}],"title":"Mathematica notebook and Fortran code for 'Effect of assortative mating and sexual selection on polygenic barriers to gene flow'","publisher":"Institute of Science and Technology Austria","article_processing_charge":"No","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"ddc":["576"],"type":"research_data","doi":"10.15479/AT:ISTA:17344","year":"2025","date_created":"2025-01-01T15:28:27Z","abstract":[{"text":"This file contains the code associated with the manuscript 'Effect of assortative mating and sexual selection on polygenic barriers to gene flow'. ","lang":"eng"}],"citation":{"chicago":"Surendranadh, Parvathy, and Himani Sachdeva. “Mathematica Notebook and Fortran Code for ‘Effect of Assortative Mating and Sexual Selection on Polygenic Barriers to Gene Flow.’” Institute of Science and Technology Austria, 2025. <a href=\"https://doi.org/10.15479/AT:ISTA:17344\">https://doi.org/10.15479/AT:ISTA:17344</a>.","mla":"Surendranadh, Parvathy, and Himani Sachdeva. <i>Mathematica Notebook and Fortran Code for “Effect of Assortative Mating and Sexual Selection on Polygenic Barriers to Gene Flow.”</i> Institute of Science and Technology Austria, 2025, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:17344\">10.15479/AT:ISTA:17344</a>.","ista":"Surendranadh P, Sachdeva H. 2025. Mathematica notebook and Fortran code for ‘Effect of assortative mating and sexual selection on polygenic barriers to gene flow’, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:17344\">10.15479/AT:ISTA:17344</a>.","apa":"Surendranadh, P., &#38; Sachdeva, H. (2025). Mathematica notebook and Fortran code for “Effect of assortative mating and sexual selection on polygenic barriers to gene flow.” Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:17344\">https://doi.org/10.15479/AT:ISTA:17344</a>","ieee":"P. Surendranadh and H. Sachdeva, “Mathematica notebook and Fortran code for ‘Effect of assortative mating and sexual selection on polygenic barriers to gene flow.’” Institute of Science and Technology Austria, 2025.","short":"P. Surendranadh, H. Sachdeva, (2025).","ama":"Surendranadh P, Sachdeva H. Mathematica notebook and Fortran code for “Effect of assortative mating and sexual selection on polygenic barriers to gene flow.” 2025. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:17344\">10.15479/AT:ISTA:17344</a>"},"fulldoi":"https://doi.org/10.15479/AT:ISTA:17344","corr_author":"1","date_updated":"2025-12-30T08:44:12Z","day":"07","status":"public","department":[{"_id":"GradSch"},{"_id":"NiBa"}],"acknowledged_ssus":[{"_id":"ScienComp"}],"month":"01","user_id":"9947682f-b9fa-11ee-9c4a-b3ffaafe6614","has_accepted_license":"1"},{"date_created":"2025-01-05T23:01:55Z","volume":125,"article_processing_charge":"Yes (in subscription journal)","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"type":"journal_article","has_accepted_license":"1","month":"03","language":[{"iso":"eng"}],"status":"public","department":[{"_id":"MaKw"}],"day":"01","date_updated":"2025-05-19T14:06:00Z","fulldoi":"https://doi.org/10.1016/j.ejc.2024.104104","abstract":[{"lang":"eng","text":"We continue a line of research which studies which hereditary families of digraphs have bounded dichromatic number. For a class of digraphs  C, a hero in  C  is any digraph  H\r\n  such that  H -free digraphs in  C  have bounded dichromatic number. We show that if  F\r\n  is an oriented star of degree at least five, the only heroes for the class of  F -free digraphs are transitive tournaments. For oriented stars  F  of degree exactly four, we show the only heroes in  F -free digraphs are transitive tournaments, or possibly special joins of transitive tournaments. Aboulker et al. characterized the set of heroes of  {H,K1+P2→} -free digraphs almost completely, and we show the same characterization for the class of  {H,rK1+P3→} -free digraphs. Lastly, we show that if we forbid two \"valid\" orientations of brooms, then every transitive tournament is a hero for this class of digraphs."}],"author":[{"last_name":"Carbonero","full_name":"Carbonero, Alvaro","first_name":"Alvaro"},{"last_name":"Koerts","full_name":"Koerts, Hidde","first_name":"Hidde"},{"last_name":"Moore","id":"6dc1a1be-bf1c-11ed-8d2b-d044840f49d6","first_name":"Benjamin","full_name":"Moore, Benjamin"},{"first_name":"Sophie","full_name":"Spirkl, Sophie","last_name":"Spirkl"}],"scopus_import":"1","publication":"European Journal of Combinatorics","external_id":{"isi":["001400113700001"],"arxiv":["2306.04710"]},"oa_version":"Published Version","_id":"18753","acknowledgement":"We thank the anonymous referees for their careful proofreading which helped improve the presentation of this paper. We also thank one of the anonymous referees for pointing out our construction implies Theorem 1.7!\r\nBenjamin Moore finished this project while a postdoctoral researcher at Charles University, and was supported by project 22-17398S (Flows and cycles in graphs on surfaces) of the Czech Science Foundation. Benjamin Moore is currently funded by RANDSTRUCT No. 101076777, and appreciates the gracious support. We acknowledge the support of the Natural Sciences and Engineering Research Council of Canada (NSERC), [funding reference number RGPIN-2020-03912]. Cette recherche a été financée par le Conseil de recherches en sciences naturelles et en génie du Canada (CRSNG), [numéro de référence RGPIN-2020-03912]. This project was funded in part by the Government of Ontario .","publication_identifier":{"issn":["0195-6698"]},"title":"On heroes in digraphs with forbidden induced forests","date_published":"2025-03-01T00:00:00Z","arxiv":1,"file_date_updated":"2025-04-16T09:16:25Z","doi":"10.1016/j.ejc.2024.104104","year":"2025","quality_controlled":"1","ddc":["510"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","corr_author":"1","citation":{"chicago":"Carbonero, Alvaro, Hidde Koerts, Benjamin Moore, and Sophie Spirkl. “On Heroes in Digraphs with Forbidden Induced Forests.” <i>European Journal of Combinatorics</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.ejc.2024.104104\">https://doi.org/10.1016/j.ejc.2024.104104</a>.","mla":"Carbonero, Alvaro, et al. “On Heroes in Digraphs with Forbidden Induced Forests.” <i>European Journal of Combinatorics</i>, vol. 125, 104104, Elsevier, 2025, doi:<a href=\"https://doi.org/10.1016/j.ejc.2024.104104\">10.1016/j.ejc.2024.104104</a>.","ista":"Carbonero A, Koerts H, Moore B, Spirkl S. 2025. On heroes in digraphs with forbidden induced forests. European Journal of Combinatorics. 125, 104104.","apa":"Carbonero, A., Koerts, H., Moore, B., &#38; Spirkl, S. (2025). On heroes in digraphs with forbidden induced forests. <i>European Journal of Combinatorics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ejc.2024.104104\">https://doi.org/10.1016/j.ejc.2024.104104</a>","ieee":"A. Carbonero, H. Koerts, B. Moore, and S. Spirkl, “On heroes in digraphs with forbidden induced forests,” <i>European Journal of Combinatorics</i>, vol. 125. Elsevier, 2025.","short":"A. Carbonero, H. Koerts, B. Moore, S. Spirkl, European Journal of Combinatorics 125 (2025).","ama":"Carbonero A, Koerts H, Moore B, Spirkl S. On heroes in digraphs with forbidden induced forests. <i>European Journal of Combinatorics</i>. 2025;125. doi:<a href=\"https://doi.org/10.1016/j.ejc.2024.104104\">10.1016/j.ejc.2024.104104</a>"},"publication_status":"published","article_number":"104104","article_type":"original","oa":1,"project":[{"name":"Randomness and structure in combinatorics","grant_number":"101076777","_id":"bd95085b-d553-11ed-ba76-e55d3349be45"}],"isi":1,"OA_place":"publisher","publisher":"Elsevier","OA_type":"hybrid","intvolume":"       125","file":[{"relation":"main_file","file_size":1110657,"content_type":"application/pdf","date_created":"2025-04-16T09:16:25Z","date_updated":"2025-04-16T09:16:25Z","file_name":"2025_EuropJournCombinatorics_Carbonero.pdf","creator":"dernst","access_level":"open_access","success":1,"file_id":"19577","checksum":"2c75f78f40ebb93d16fe3765bda2905a"}]},{"file_date_updated":"2025-01-08T09:26:42Z","date_published":"2025-01-02T00:00:00Z","title":"DNA methylation-based predictors of metabolic traits in Scottish and Singaporean cohorts","publication_identifier":{"issn":["0002-9297"],"eissn":["1537-6605"]},"_id":"18754","oa_version":"Published Version","external_id":{"pmid":["39706196"],"isi":["001412498600001"]},"publication":"American Journal of Human Genetics","scopus_import":"1","author":[{"full_name":"Smith, Hannah M.","first_name":"Hannah M.","last_name":"Smith"},{"full_name":"Ng, Hong Kiat","last_name":"Ng","first_name":"Hong Kiat"},{"full_name":"Moodie, Joanna E.","first_name":"Joanna E.","last_name":"Moodie"},{"full_name":"Gadd, Danni A.","last_name":"Gadd","first_name":"Danni A."},{"full_name":"Mccartney, Daniel L.","last_name":"Mccartney","first_name":"Daniel L."},{"full_name":"Bernabeu, Elena","first_name":"Elena","last_name":"Bernabeu"},{"full_name":"Campbell, Archie","first_name":"Archie","last_name":"Campbell"},{"last_name":"Redmond","full_name":"Redmond, Paul","first_name":"Paul"},{"last_name":"Taylor","full_name":"Taylor, Adele","first_name":"Adele"},{"first_name":"Danielle","last_name":"Page","full_name":"Page, Danielle"},{"last_name":"Corley","full_name":"Corley, Janie","first_name":"Janie"},{"last_name":"Harris","full_name":"Harris, Sarah E.","first_name":"Sarah E."},{"full_name":"Tay, Darwin","first_name":"Darwin","last_name":"Tay"},{"first_name":"Ian J.","full_name":"Deary, Ian J.","last_name":"Deary"},{"first_name":"Kathryn L.","full_name":"Evans, Kathryn L.","last_name":"Evans"},{"id":"E5D42276-F5DA-11E9-8E24-6303E6697425","full_name":"Robinson, Matthew Richard","first_name":"Matthew Richard","last_name":"Robinson","orcid":"0000-0001-8982-8813"},{"first_name":"John C.","full_name":"Chambers, John C.","last_name":"Chambers"},{"last_name":"Loh","first_name":"Marie","full_name":"Loh, Marie"},{"last_name":"Cox","first_name":"Simon R.","full_name":"Cox, Simon R."},{"first_name":"Riccardo E.","full_name":"Marioni, Riccardo E.","last_name":"Marioni"},{"first_name":"Robert F.","full_name":"Hillary, Robert F.","last_name":"Hillary"}],"abstract":[{"text":"Exploring the molecular correlates of metabolic health measures may identify their shared and unique biological processes and pathways. Molecular proxies of these traits may also provide a more objective approach to their measurement. Here, DNA methylation (DNAm) data were used in epigenome-wide association studies (EWASs) and for training epigenetic scores (EpiScores) of six metabolic traits: body mass index (BMI), body fat percentage, waist-hip ratio, and blood-based measures of glucose, high-density lipoprotein cholesterol, and total cholesterol in >17,000 volunteers from the Generation Scotland (GS) cohort. We observed a maximum of 12,033 significant findings (p < 3.6 × 10−8) for BMI in a marginal linear regression EWAS. By contrast, a joint and conditional Bayesian penalized regression approach yielded 27 high-confidence associations with BMI. EpiScores trained in GS performed well in both Scottish and Singaporean test cohorts (Lothian Birth Cohort 1936 [LBC1936] and Health for Life in Singapore [HELIOS]). The EpiScores for BMI and total cholesterol performed best in HELIOS, explaining 20.8% and 7.1% of the variance in the measured traits, respectively. The corresponding results in LBC1936 were 14.4% and 3.2%, respectively. Differences were observed in HELIOS for body fat, where the EpiScore explained ∼9% of the variance in Chinese and Malay -subgroups but ∼3% in the Indian subgroup. The EpiScores also correlated with cognitive function in LBC1936 (standardized βrange: 0.08–0.12, false discovery rate p [pFDR] < 0.05). Accounting for the correlation structure across the methylome can vastly affect the number of lead findings in EWASs. The EpiScores of metabolic traits are broadly applicable across populations and can reflect differences in cognition.","lang":"eng"}],"fulldoi":"https://doi.org/10.1016/j.ajhg.2024.11.012","day":"02","date_updated":"2025-02-27T12:38:23Z","department":[{"_id":"MaRo"}],"status":"public","month":"01","language":[{"iso":"eng"}],"has_accepted_license":"1","article_processing_charge":"No","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"type":"journal_article","date_created":"2025-01-05T23:01:56Z","volume":112,"file":[{"file_name":"2025_AJHG_Smith.pdf","date_updated":"2025-01-08T09:26:42Z","checksum":"891d120554f07da2c35d38388c29a690","file_id":"18776","success":1,"access_level":"open_access","creator":"dernst","content_type":"application/pdf","file_size":2266488,"relation":"main_file","date_created":"2025-01-08T09:26:42Z"}],"intvolume":"       112","OA_type":"hybrid","publisher":"Elsevier","issue":"1","isi":1,"OA_place":"publisher","related_material":{"link":[{"url":"https://github.com/marioni-group/Metabolic_trait","relation":"software"}]},"oa":1,"pmid":1,"article_type":"original","publication_status":"published","citation":{"chicago":"Smith, Hannah M., Hong Kiat Ng, Joanna E. Moodie, Danni A. Gadd, Daniel L. Mccartney, Elena Bernabeu, Archie Campbell, et al. “DNA Methylation-Based Predictors of Metabolic Traits in Scottish and Singaporean Cohorts.” <i>American Journal of Human Genetics</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.ajhg.2024.11.012\">https://doi.org/10.1016/j.ajhg.2024.11.012</a>.","mla":"Smith, Hannah M., et al. “DNA Methylation-Based Predictors of Metabolic Traits in Scottish and Singaporean Cohorts.” <i>American Journal of Human Genetics</i>, vol. 112, no. 1, Elsevier, 2025, pp. 106–15, doi:<a href=\"https://doi.org/10.1016/j.ajhg.2024.11.012\">10.1016/j.ajhg.2024.11.012</a>.","ista":"Smith HM, Ng HK, Moodie JE, Gadd DA, Mccartney DL, Bernabeu E, Campbell A, Redmond P, Taylor A, Page D, Corley J, Harris SE, Tay D, Deary IJ, Evans KL, Robinson MR, Chambers JC, Loh M, Cox SR, Marioni RE, Hillary RF. 2025. DNA methylation-based predictors of metabolic traits in Scottish and Singaporean cohorts. American Journal of Human Genetics. 112(1), 106–115.","apa":"Smith, H. M., Ng, H. K., Moodie, J. E., Gadd, D. A., Mccartney, D. L., Bernabeu, E., … Hillary, R. F. (2025). DNA methylation-based predictors of metabolic traits in Scottish and Singaporean cohorts. <i>American Journal of Human Genetics</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ajhg.2024.11.012\">https://doi.org/10.1016/j.ajhg.2024.11.012</a>","ieee":"H. M. Smith <i>et al.</i>, “DNA methylation-based predictors of metabolic traits in Scottish and Singaporean cohorts,” <i>American Journal of Human Genetics</i>, vol. 112, no. 1. Elsevier, pp. 106–115, 2025.","ama":"Smith HM, Ng HK, Moodie JE, et al. DNA methylation-based predictors of metabolic traits in Scottish and Singaporean cohorts. <i>American Journal of Human Genetics</i>. 2025;112(1):106-115. doi:<a href=\"https://doi.org/10.1016/j.ajhg.2024.11.012\">10.1016/j.ajhg.2024.11.012</a>","short":"H.M. Smith, H.K. Ng, J.E. Moodie, D.A. Gadd, D.L. Mccartney, E. Bernabeu, A. Campbell, P. Redmond, A. Taylor, D. Page, J. Corley, S.E. Harris, D. Tay, I.J. Deary, K.L. Evans, M.R. Robinson, J.C. Chambers, M. Loh, S.R. Cox, R.E. Marioni, R.F. Hillary, American Journal of Human Genetics 112 (2025) 106–115."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["570"],"quality_controlled":"1","doi":"10.1016/j.ajhg.2024.11.012","year":"2025","page":"106-115"},{"article_processing_charge":"No","type":"book_chapter","series_title":"MIMB","volume":2886,"date_created":"2025-01-07T08:36:47Z","day":"03","date_updated":"2025-04-14T07:43:46Z","place":"New York, NY","abstract":[{"text":"Mosaic Analysis with Double Markers (MADM) represents a mouse genetic approach coupling differential fluorescent labeling to genetic manipulations in dividing cells and their lineages. MADM uniquely enables the generation and visualization of individual control or homozygous mutant cells in a heterozygous genetic environment. Among its diverse applications, MADM has been used to dissect cell-autonomous gene functions important for cortical development and neural development in general. The high cellular resolution offered by MADM also permits the analysis of transcriptomic changes of individual cells upon genetic manipulations. In this chapter, we describe an experimental protocol combining the generation and isolation of MADM-labeled cells with downstream single-cell RNA-sequencing technologies to probe cell-type specific phenotypes due to genetic mutations at single-cell resolution.","lang":"eng"}],"fulldoi":"https://doi.org/10.1007/978-1-0716-4310-5_7","language":[{"iso":"eng"}],"month":"01","acknowledged_ssus":[{"_id":"Bio"}],"status":"public","department":[{"_id":"SiHi"}],"oa_version":"None","acknowledgement":"We thank all Hippenmeyer lab members for support and discussions. Experimental steps described were optimized with support provided by the Imaging & Optics Facility (IOF) and Preclinical Facility (PCF) at ISTA, Vienna BioCenter Core Facilities (VBCF), and Christoph Bock lab at Center for Molecular Medicine (CeMM). G.C. received funding from European Commission (IST plus postdoctoral fellowship). This work was supported by ISTA institutional funds: The Austrian Science Fund Special Research Programmes (FWF SFB F78 Neuro Stem Modulation) to S.H.","_id":"18765","external_id":{"pmid":["39745639"]},"scopus_import":"1","publication":"Lineage Tracing","author":[{"orcid":"0000-0001-8457-2572","id":"471195F6-F248-11E8-B48F-1D18A9856A87","first_name":"Giselle T","full_name":"Cheung, Giselle T","last_name":"Cheung"},{"id":"48EA0138-F248-11E8-B48F-1D18A9856A87","full_name":"Pauler, Florian","first_name":"Florian","last_name":"Pauler","orcid":"0000-0002-7462-0048"},{"orcid":"0000-0003-2279-1061","full_name":"Hippenmeyer, Simon","id":"37B36620-F248-11E8-B48F-1D18A9856A87","last_name":"Hippenmeyer","first_name":"Simon"}],"editor":[{"first_name":"Jorge","full_name":"Garcia-Marques, Jorge","last_name":"Garcia-Marques"},{"full_name":"Lee, Tzumin","first_name":"Tzumin","last_name":"Lee"}],"date_published":"2025-01-03T00:00:00Z","title":"Probing Cell-Type Specificity of Mutant Phenotype at Transcriptomic Level Using Mosaic Analysis with Double Markers (MADM)","publication_identifier":{"issn":["1064-3745"],"isbn":["9781071643099"],"eisbn":["9781071643105"],"eissn":["1940-6029"]},"quality_controlled":"1","doi":"10.1007/978-1-0716-4310-5_7","year":"2025","page":"139-151","ec_funded":1,"corr_author":"1","publication_status":"published","citation":{"ieee":"G. T. Cheung, F. Pauler, and S. Hippenmeyer, “Probing Cell-Type Specificity of Mutant Phenotype at Transcriptomic Level Using Mosaic Analysis with Double Markers (MADM),” in <i>Lineage Tracing</i>, vol. 2886, J. Garcia-Marques and T. Lee, Eds. New York, NY: Springer Nature, 2025, pp. 139–151.","apa":"Cheung, G. T., Pauler, F., &#38; Hippenmeyer, S. (2025). Probing Cell-Type Specificity of Mutant Phenotype at Transcriptomic Level Using Mosaic Analysis with Double Markers (MADM). In J. Garcia-Marques &#38; T. Lee (Eds.), <i>Lineage Tracing</i> (Vol. 2886, pp. 139–151). New York, NY: Springer Nature. <a href=\"https://doi.org/10.1007/978-1-0716-4310-5_7\">https://doi.org/10.1007/978-1-0716-4310-5_7</a>","ista":"Cheung GT, Pauler F, Hippenmeyer S. 2025.Probing Cell-Type Specificity of Mutant Phenotype at Transcriptomic Level Using Mosaic Analysis with Double Markers (MADM). In: Lineage Tracing. Methods in Molecular Biology, vol. 2886, 139–151.","mla":"Cheung, Giselle T., et al. “Probing Cell-Type Specificity of Mutant Phenotype at Transcriptomic Level Using Mosaic Analysis with Double Markers (MADM).” <i>Lineage Tracing</i>, edited by Jorge Garcia-Marques and Tzumin Lee, vol. 2886, Springer Nature, 2025, pp. 139–51, doi:<a href=\"https://doi.org/10.1007/978-1-0716-4310-5_7\">10.1007/978-1-0716-4310-5_7</a>.","chicago":"Cheung, Giselle T, Florian Pauler, and Simon Hippenmeyer. “Probing Cell-Type Specificity of Mutant Phenotype at Transcriptomic Level Using Mosaic Analysis with Double Markers (MADM).” In <i>Lineage Tracing</i>, edited by Jorge Garcia-Marques and Tzumin Lee, 2886:139–51. MIMB. New York, NY: Springer Nature, 2025. <a href=\"https://doi.org/10.1007/978-1-0716-4310-5_7\">https://doi.org/10.1007/978-1-0716-4310-5_7</a>.","ama":"Cheung GT, Pauler F, Hippenmeyer S. Probing Cell-Type Specificity of Mutant Phenotype at Transcriptomic Level Using Mosaic Analysis with Double Markers (MADM). In: Garcia-Marques J, Lee T, eds. <i>Lineage Tracing</i>. Vol 2886. MIMB. New York, NY: Springer Nature; 2025:139-151. doi:<a href=\"https://doi.org/10.1007/978-1-0716-4310-5_7\">10.1007/978-1-0716-4310-5_7</a>","short":"G.T. Cheung, F. Pauler, S. Hippenmeyer, in:, J. Garcia-Marques, T. Lee (Eds.), Lineage Tracing, Springer Nature, New York, NY, 2025, pp. 139–151."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","project":[{"call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411"}],"pmid":1,"alternative_title":["Methods in Molecular Biology"],"OA_type":"closed access","intvolume":"      2886","publisher":"Springer Nature"}]