[{"article_type":"original","date_updated":"2025-09-30T11:13:47Z","acknowledgement":"The authors thank members of their laboratories who provided feedback on earlier versions of this manuscript, including A. Jourdon, V. Mariano, T. L. Li, N. Caporale, E. Villa and M. Sutcliffe.","status":"public","quality_controlled":"1","title":"A framework for neural organoids, assembloids and transplantation studies","external_id":{"pmid":["39653126"],"isi":["001437461900001"]},"page":"315-320","type":"journal_article","doi":"10.1038/s41586-024-08487-6","citation":{"ama":"Pașca SP, Arlotta P, Bateup HS, et al. A framework for neural organoids, assembloids and transplantation studies. <i>Nature</i>. 2025;639(8054):315-320. doi:<a href=\"https://doi.org/10.1038/s41586-024-08487-6\">10.1038/s41586-024-08487-6</a>","ista":"Pașca SP, Arlotta P, Bateup HS, Camp JG, Cappello S, Gage FH, Knoblich JA, Kriegstein AR, Lancaster MA, Ming GL, Novarino G, Okano H, Parmar M, Park IH, Reiner O, Song H, Studer L, Takahashi J, Temple S, Testa G, Treutlein B, Vaccarino FM, Vanderhaeghen P, Young-Pearse T. 2025. A framework for neural organoids, assembloids and transplantation studies. Nature. 639(8054), 315–320.","short":"S.P. Pașca, P. Arlotta, H.S. Bateup, J.G. Camp, S. Cappello, F.H. Gage, J.A. Knoblich, A.R. Kriegstein, M.A. Lancaster, G.L. Ming, G. Novarino, H. Okano, M. Parmar, I.H. Park, O. Reiner, H. Song, L. Studer, J. Takahashi, S. Temple, G. Testa, B. Treutlein, F.M. Vaccarino, P. Vanderhaeghen, T. Young-Pearse, Nature 639 (2025) 315–320.","chicago":"Pașca, Sergiu P., Paola Arlotta, Helen S. Bateup, J. Gray Camp, Silvia Cappello, Fred H. Gage, Jürgen A. Knoblich, et al. “A Framework for Neural Organoids, Assembloids and Transplantation Studies.” <i>Nature</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41586-024-08487-6\">https://doi.org/10.1038/s41586-024-08487-6</a>.","apa":"Pașca, S. P., Arlotta, P., Bateup, H. S., Camp, J. G., Cappello, S., Gage, F. H., … Young-Pearse, T. (2025). A framework for neural organoids, assembloids and transplantation studies. <i>Nature</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41586-024-08487-6\">https://doi.org/10.1038/s41586-024-08487-6</a>","ieee":"S. P. Pașca <i>et al.</i>, “A framework for neural organoids, assembloids and transplantation studies,” <i>Nature</i>, vol. 639, no. 8054. Springer Nature, pp. 315–320, 2025.","mla":"Pașca, Sergiu P., et al. “A Framework for Neural Organoids, Assembloids and Transplantation Studies.” <i>Nature</i>, vol. 639, no. 8054, Springer Nature, 2025, pp. 315–20, doi:<a href=\"https://doi.org/10.1038/s41586-024-08487-6\">10.1038/s41586-024-08487-6</a>."},"publication_identifier":{"issn":["0028-0836"],"eissn":["1476-4687"]},"month":"03","pmid":1,"date_published":"2025-03-13T00:00:00Z","isi":1,"day":"13","abstract":[{"lang":"eng","text":"As the field of neural organoids and assembloids expands, there is an emergent need for guidance and advice on designing, conducting and reporting experiments to increase the reproducibility and utility of these models. In this Perspective, we present a framework for the experimental process that encompasses ensuring the quality and integrity of human pluripotent stem cells, characterizing and manipulating neural cells in vitro, transplantation techniques and considerations for modelling human development, evolution and disease. As with all scientific endeavours, we advocate for rigorous experimental designs tailored to explicit scientific questions as well as transparent methodologies and data sharing to provide useful knowledge for current research practices and for developing regulatory standards."}],"oa_version":"None","OA_type":"closed access","publication_status":"published","year":"2025","volume":639,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publication":"Nature","issue":"8054","intvolume":"       639","department":[{"_id":"GaNo"}],"author":[{"last_name":"Pașca","full_name":"Pașca, Sergiu P.","first_name":"Sergiu P."},{"full_name":"Arlotta, Paola","last_name":"Arlotta","first_name":"Paola"},{"last_name":"Bateup","full_name":"Bateup, Helen S.","first_name":"Helen S."},{"first_name":"J. Gray","last_name":"Camp","full_name":"Camp, J. Gray"},{"first_name":"Silvia","last_name":"Cappello","full_name":"Cappello, Silvia"},{"first_name":"Fred H.","last_name":"Gage","full_name":"Gage, Fred H."},{"first_name":"Jürgen A.","last_name":"Knoblich","full_name":"Knoblich, Jürgen A."},{"full_name":"Kriegstein, Arnold R.","last_name":"Kriegstein","first_name":"Arnold R."},{"first_name":"Madeline A.","full_name":"Lancaster, Madeline A.","last_name":"Lancaster"},{"first_name":"Guo Li","last_name":"Ming","full_name":"Ming, Guo Li"},{"orcid":"0000-0002-7673-7178","first_name":"Gaia","id":"3E57A680-F248-11E8-B48F-1D18A9856A87","full_name":"Novarino, Gaia","last_name":"Novarino"},{"first_name":"Hideyuki","last_name":"Okano","full_name":"Okano, Hideyuki"},{"full_name":"Parmar, Malin","last_name":"Parmar","first_name":"Malin"},{"last_name":"Park","full_name":"Park, In Hyun","first_name":"In Hyun"},{"full_name":"Reiner, Orly","last_name":"Reiner","first_name":"Orly"},{"first_name":"Hongjun","last_name":"Song","full_name":"Song, Hongjun"},{"last_name":"Studer","full_name":"Studer, Lorenz","first_name":"Lorenz"},{"first_name":"Jun","last_name":"Takahashi","full_name":"Takahashi, Jun"},{"last_name":"Temple","full_name":"Temple, Sally","first_name":"Sally"},{"first_name":"Giuseppe","full_name":"Testa, Giuseppe","last_name":"Testa"},{"full_name":"Treutlein, Barbara","last_name":"Treutlein","first_name":"Barbara"},{"first_name":"Flora M.","last_name":"Vaccarino","full_name":"Vaccarino, Flora M."},{"first_name":"Pierre","full_name":"Vanderhaeghen, Pierre","last_name":"Vanderhaeghen"},{"last_name":"Young-Pearse","full_name":"Young-Pearse, Tracy","first_name":"Tracy"}],"date_created":"2025-03-23T23:01:27Z","scopus_import":"1","article_processing_charge":"No","language":[{"iso":"eng"}],"_id":"19444","publisher":"Springer Nature"},{"abstract":[{"text":"In reconfiguration, we are given two solutions to a graph problem, such as Vertex Cover or Dominating Set, with each solution represented by a placement of tokens on vertices of the graph. Our task is to reconfigure one into the other using small steps while ensuring the intermediate configurations of tokens are also valid solutions. The two commonly studied settings are Token Jumping and Token Sliding, which allows moving a single token to an arbitrary or an adjacent vertex, respectively.\r\n\r\nWe introduce new rules that generalize Token Jumping, parameterized by the number of tokens allowed to move at once and by the maximum distance of each move. Our main contribution is identifying minimal rules that allow reconfiguring any possible given solution into any other for Independent Set, Vertex Cover, and Dominating Set. For each minimal rule, we also provide an efficient algorithm that finds a corresponding reconfiguration sequence.\r\n\r\nWe further focus on the rule that allows each token to move to an adjacent vertex in a single step. This natural variant turns out to be the minimal rule that guarantees reconfigurability for Vertex Cover. We determine the computational complexity of deciding whether a (shortest) reconfiguration sequence exists under this rule for the three studied problems. While reachability for Vertex Cover is shown to be in P, finding a shortest sequence is shown to be NP-complete. For Independent Set and Dominating Set, even reachability is shown to be PSPACE-complete.","lang":"eng"}],"arxiv":1,"oa_version":"Preprint","day":"20","isi":1,"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2411.12582","open_access":"1"}],"date_published":"2025-02-20T00:00:00Z","month":"02","publication_identifier":{"eissn":["1611-3349"],"isbn":["9789819628445"],"issn":["0302-9743"]},"citation":{"mla":"Křišťan, Jan Matyáš, and Jakub Svoboda. “Reconfiguration Using Generalized Token Jumping.” <i>19th International Conference and Workshops on Algorithms and Computation</i>, vol. 15411, Springer Nature, 2025, pp. 244–65, doi:<a href=\"https://doi.org/10.1007/978-981-96-2845-2_16\">10.1007/978-981-96-2845-2_16</a>.","ieee":"J. M. Křišťan and J. Svoboda, “Reconfiguration using generalized token jumping,” in <i>19th International Conference and Workshops on Algorithms and Computation</i>, Chengdu, China, 2025, vol. 15411, pp. 244–265.","chicago":"Křišťan, Jan Matyáš, and Jakub Svoboda. “Reconfiguration Using Generalized Token Jumping.” In <i>19th International Conference and Workshops on Algorithms and Computation</i>, 15411:244–65. Springer Nature, 2025. <a href=\"https://doi.org/10.1007/978-981-96-2845-2_16\">https://doi.org/10.1007/978-981-96-2845-2_16</a>.","apa":"Křišťan, J. M., &#38; Svoboda, J. (2025). Reconfiguration using generalized token jumping. In <i>19th International Conference and Workshops on Algorithms and Computation</i> (Vol. 15411, pp. 244–265). Chengdu, China: Springer Nature. <a href=\"https://doi.org/10.1007/978-981-96-2845-2_16\">https://doi.org/10.1007/978-981-96-2845-2_16</a>","ama":"Křišťan JM, Svoboda J. Reconfiguration using generalized token jumping. In: <i>19th International Conference and Workshops on Algorithms and Computation</i>. Vol 15411. Springer Nature; 2025:244-265. doi:<a href=\"https://doi.org/10.1007/978-981-96-2845-2_16\">10.1007/978-981-96-2845-2_16</a>","short":"J.M. Křišťan, J. Svoboda, in:, 19th International Conference and Workshops on Algorithms and Computation, Springer Nature, 2025, pp. 244–265.","ista":"Křišťan JM, Svoboda J. 2025. Reconfiguration using generalized token jumping. 19th International Conference and Workshops on Algorithms and Computation. WALCOM: International Conference and Workshops on Algorithms and Computation, LNCS, vol. 15411, 244–265."},"doi":"10.1007/978-981-96-2845-2_16","type":"conference","page":"244-265","external_id":{"arxiv":["2411.12582"],"isi":["001537885900016"]},"title":"Reconfiguration using generalized token jumping","OA_place":"repository","quality_controlled":"1","status":"public","alternative_title":["LNCS"],"acknowledgement":"J. M. Křišťan acknowledges the support of the Czech Science Foundation Grant No. 24-12046S. This work was supported by the Grant Agency of the Czech Technical University in Prague, grant No. SGS23/205/OHK3/3T/18. J. Svoboda acknowledges the support of the ERC CoG 863818 (ForM-SMArt) grant.","date_updated":"2025-09-30T11:14:33Z","publisher":"Springer Nature","language":[{"iso":"eng"}],"_id":"19445","article_processing_charge":"No","scopus_import":"1","date_created":"2025-03-23T23:01:27Z","author":[{"first_name":"Jan Matyáš","full_name":"Křišťan, Jan Matyáš","last_name":"Křišťan"},{"last_name":"Svoboda","full_name":"Svoboda, Jakub","first_name":"Jakub","id":"130759D2-D7DD-11E9-87D2-DE0DE6697425","orcid":"0000-0002-1419-3267"}],"department":[{"_id":"KrCh"}],"project":[{"name":"Formal Methods for Stochastic Models: Algorithms and Applications","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","grant_number":"863818","call_identifier":"H2020"}],"conference":{"name":"WALCOM: International Conference and Workshops on Algorithms and Computation","location":"Chengdu, China","end_date":"2025-03-02","start_date":"2025-02-28"},"intvolume":"     15411","publication":"19th International Conference and Workshops on Algorithms and Computation","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","volume":15411,"year":"2025","publication_status":"published","ec_funded":1,"oa":1,"OA_type":"green"},{"file":[{"date_created":"2025-03-25T07:49:04Z","file_size":1553502,"file_id":"19454","content_type":"application/pdf","creator":"dernst","checksum":"1217207c254553154faa065964990988","relation":"main_file","access_level":"open_access","date_updated":"2025-03-25T07:49:04Z","success":1,"file_name":"2025_PNAS_Chiossi.pdf"}],"pmid":1,"date_published":"2025-03-10T00:00:00Z","isi":1,"day":"10","oa_version":"Published Version","abstract":[{"lang":"eng","text":"A key feature of biological and artificial neural networks is the progressive refinement of their neural representations with experience. In neuroscience, this fact has inspired several recent studies in sensory and motor systems. However, less is known about how higher associational cortical areas, such as the hippocampus, modify representations throughout the learning of complex tasks. Here, we focus on associative learning, a process that requires forming a connection between the representations of different variables for appropriate behavioral response. We trained rats in a space-context associative task and monitored hippocampal neural activity throughout the entire learning period, over several days. This allowed us to assess changes in the representations of context, movement direction, and position, as well as their relationship to behavior. We identified a hierarchical representational structure in the encoding of these three task variables that was preserved throughout learning. Nevertheless, we also observed changes at the lower levels of the hierarchy where context was encoded. These changes were local in neural activity space and restricted to physical positions where context identification was necessary for correct decision-making, supporting better context decoding and contextual code compression. Our results demonstrate that the hippocampal code not only accommodates hierarchical relationships between different variables but also enables efficient learning through minimal changes in neural activity space. Beyond the hippocampus, our work reveals a representation learning mechanism that might be implemented in other biological and artificial networks performing similar tasks."}],"type":"journal_article","doi":"10.1073/pnas.2417025122","citation":{"apa":"Chiossi, H. S. C., Nardin, M., Tkačik, G., &#38; Csicsvari, J. L. (2025). Learning reshapes the hippocampal representation hierarchy. <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.2417025122\">https://doi.org/10.1073/pnas.2417025122</a>","chicago":"Chiossi, Heloisa S. C., Michele Nardin, Gašper Tkačik, and Jozsef L Csicsvari. “Learning Reshapes the Hippocampal Representation Hierarchy.” <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences, 2025. <a href=\"https://doi.org/10.1073/pnas.2417025122\">https://doi.org/10.1073/pnas.2417025122</a>.","short":"H.S.C. Chiossi, M. Nardin, G. Tkačik, J.L. Csicsvari, Proceedings of the National Academy of Sciences 122 (2025).","ama":"Chiossi HSC, Nardin M, Tkačik G, Csicsvari JL. Learning reshapes the hippocampal representation hierarchy. <i>Proceedings of the National Academy of Sciences</i>. 2025;122(11). doi:<a href=\"https://doi.org/10.1073/pnas.2417025122\">10.1073/pnas.2417025122</a>","ista":"Chiossi HSC, Nardin M, Tkačik G, Csicsvari JL. 2025. Learning reshapes the hippocampal representation hierarchy. Proceedings of the National Academy of Sciences. 122(11), e2417025122.","mla":"Chiossi, Heloisa S. C., et al. “Learning Reshapes the Hippocampal Representation Hierarchy.” <i>Proceedings of the National Academy of Sciences</i>, vol. 122, no. 11, e2417025122, National Academy of Sciences, 2025, doi:<a href=\"https://doi.org/10.1073/pnas.2417025122\">10.1073/pnas.2417025122</a>.","ieee":"H. S. C. Chiossi, M. Nardin, G. Tkačik, and J. L. Csicsvari, “Learning reshapes the hippocampal representation hierarchy,” <i>Proceedings of the National Academy of Sciences</i>, vol. 122, no. 11. National Academy of Sciences, 2025."},"publication_identifier":{"issn":["0027-8424"],"eissn":["1091-6490"]},"month":"03","status":"public","quality_controlled":"1","OA_place":"publisher","title":"Learning reshapes the hippocampal representation hierarchy","APC_amount":"3317,75 EUR","external_id":{"pmid":["40063792"],"isi":["001459499500001"]},"article_type":"original","tmp":{"image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)"},"ddc":["570"],"date_updated":"2026-05-06T13:12:01Z","acknowledgement":"We would like to thank Rebecca Morse for performing the recordings in one of the animals under the supervision of H.S.C.C., Jago Wallenschus for the technical support, especially with maze design, Wiktor Mlynarski for the advice and discussions and Andrea Cumpelik for suggestions during the writing. M.N. was supported by the Howard Hughes Medical Institute. H.S.C.C. received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 665385.","date_created":"2025-03-25T07:38:35Z","related_material":{"record":[{"id":"18991","relation":"research_data","status":"public"}],"link":[{"url":"https://github.com/hchiossi/hpc-hierarchy","relation":"software"}]},"scopus_import":"1","article_processing_charge":"Yes (in subscription journal)","language":[{"iso":"eng"}],"_id":"19453","publisher":"National Academy of Sciences","article_number":"e2417025122","project":[{"name":"International IST Doctoral Program","call_identifier":"H2020","grant_number":"665385","_id":"2564DBCA-B435-11E9-9278-68D0E5697425"}],"department":[{"_id":"GaTk"},{"_id":"JoCs"}],"author":[{"orcid":"0009-0004-2973-278X","first_name":"Heloisa","id":"2BBA502C-F248-11E8-B48F-1D18A9856A87","last_name":"Chiossi","full_name":"Chiossi, Heloisa"},{"orcid":"0000-0001-8849-6570","id":"30BD0376-F248-11E8-B48F-1D18A9856A87","first_name":"Michele","full_name":"Nardin, Michele","last_name":"Nardin"},{"full_name":"Tkačik, Gašper","last_name":"Tkačik","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","first_name":"Gašper","orcid":"0000-0002-6699-1455"},{"last_name":"Csicsvari","full_name":"Csicsvari, Jozsef L","first_name":"Jozsef L","id":"3FA14672-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5193-4036"}],"publication":"Proceedings of the National Academy of Sciences","issue":"11","corr_author":"1","intvolume":"       122","has_accepted_license":"1","OA_type":"hybrid","oa":1,"ec_funded":1,"publication_status":"published","year":"2025","file_date_updated":"2025-03-25T07:49:04Z","volume":122,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"publication_status":"published","OA_type":"closed access","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","volume":26,"year":"2025","publication":"Nature Reviews Molecular Cell Biology","corr_author":"1","intvolume":"        26","department":[{"_id":"CaBe"}],"article_number":"415","author":[{"orcid":"0000-0003-0893-7036","first_name":"Carrie A","id":"2CB9DFE2-F248-11E8-B48F-1D18A9856A87","full_name":"Bernecky, Carrie A","last_name":"Bernecky"}],"article_processing_charge":"No","scopus_import":"1","date_created":"2025-03-31T10:07:22Z","publisher":"Springer Nature","_id":"19465","language":[{"iso":"eng"}],"article_type":"letter_note","date_updated":"2025-09-30T11:20:36Z","quality_controlled":"1","status":"public","external_id":{"isi":["001455740100001"],"pmid":["40155512"]},"title":"Understanding the machinery that reads the genome","type":"journal_article","doi":"10.1038/s41580-025-00844-1","month":"06","citation":{"mla":"Bernecky, Carrie. “Understanding the Machinery That Reads the Genome.” <i>Nature Reviews Molecular Cell Biology</i>, vol. 26, 415, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1038/s41580-025-00844-1\">10.1038/s41580-025-00844-1</a>.","ieee":"C. Bernecky, “Understanding the machinery that reads the genome,” <i>Nature Reviews Molecular Cell Biology</i>, vol. 26. Springer Nature, 2025.","chicago":"Bernecky, Carrie. “Understanding the Machinery That Reads the Genome.” <i>Nature Reviews Molecular Cell Biology</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41580-025-00844-1\">https://doi.org/10.1038/s41580-025-00844-1</a>.","apa":"Bernecky, C. (2025). Understanding the machinery that reads the genome. <i>Nature Reviews Molecular Cell Biology</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41580-025-00844-1\">https://doi.org/10.1038/s41580-025-00844-1</a>","ama":"Bernecky C. Understanding the machinery that reads the genome. <i>Nature Reviews Molecular Cell Biology</i>. 2025;26. doi:<a href=\"https://doi.org/10.1038/s41580-025-00844-1\">10.1038/s41580-025-00844-1</a>","ista":"Bernecky C. 2025. Understanding the machinery that reads the genome. Nature Reviews Molecular Cell Biology. 26, 415.","short":"C. Bernecky, Nature Reviews Molecular Cell Biology 26 (2025)."},"publication_identifier":{"eissn":["1471-0080"],"issn":["1471-0072"]},"isi":1,"pmid":1,"date_published":"2025-06-01T00:00:00Z","oa_version":"None","day":"01"},{"status":"public","OA_place":"publisher","quality_controlled":"1","title":"Latent Ewald summation for machine learning of long-range interactions","external_id":{"isi":["001453622900002"],"arxiv":["2408.15165"]},"article_type":"original","ddc":["000"],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"date_updated":"2025-09-30T11:31:47Z","acknowledgement":"B. C. thanks David Limmer for providing the water slab dataset, and Carolin Faller for the NaCl dataset.","file":[{"file_id":"19528","content_type":"application/pdf","date_created":"2025-04-08T09:34:58Z","file_size":1608315,"date_updated":"2025-04-08T09:34:58Z","file_name":"2025_npjCompMaterials_Cheng.pdf","success":1,"creator":"dernst","checksum":"cc99b7407a12139d9b2d8457961935ae","relation":"main_file","access_level":"open_access"}],"isi":1,"date_published":"2025-03-26T00:00:00Z","day":"26","abstract":[{"lang":"eng","text":"Machine learning interatomic potentials (MLIPs) often neglect long-range interactions, such as electrostatic and dispersion forces. In this work, we introduce a straightforward and efficient method to account for long-range interactions by learning a hidden variable from local atomic descriptors and applying an Ewald summation to this variable. We demonstrate that in systems including charged and polar molecular dimers, bulk water, and water-vapor interface, standard short-ranged MLIPs can lead to unphysical predictions even when employing message passing. The long-range models effectively eliminate these artifacts, with only about twice the computational cost of short-range MLIPs."}],"arxiv":1,"oa_version":"Published Version","DOAJ_listed":"1","doi":"10.1038/s41524-025-01577-7","type":"journal_article","month":"03","publication_identifier":{"eissn":["2057-3960"]},"citation":{"ista":"Cheng B. 2025. Latent Ewald summation for machine learning of long-range interactions. npj Computational Materials. 11, 80.","ama":"Cheng B. Latent Ewald summation for machine learning of long-range interactions. <i>npj Computational Materials</i>. 2025;11. doi:<a href=\"https://doi.org/10.1038/s41524-025-01577-7\">10.1038/s41524-025-01577-7</a>","short":"B. Cheng, Npj Computational Materials 11 (2025).","apa":"Cheng, B. (2025). Latent Ewald summation for machine learning of long-range interactions. <i>Npj Computational Materials</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41524-025-01577-7\">https://doi.org/10.1038/s41524-025-01577-7</a>","chicago":"Cheng, Bingqing. “Latent Ewald Summation for Machine Learning of Long-Range Interactions.” <i>Npj Computational Materials</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41524-025-01577-7\">https://doi.org/10.1038/s41524-025-01577-7</a>.","ieee":"B. Cheng, “Latent Ewald summation for machine learning of long-range interactions,” <i>npj Computational Materials</i>, vol. 11. Springer Nature, 2025.","mla":"Cheng, Bingqing. “Latent Ewald Summation for Machine Learning of Long-Range Interactions.” <i>Npj Computational Materials</i>, vol. 11, 80, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1038/s41524-025-01577-7\">10.1038/s41524-025-01577-7</a>."},"publication":"npj Computational Materials","corr_author":"1","intvolume":"        11","oa":1,"OA_type":"gold","has_accepted_license":"1","publication_status":"published","file_date_updated":"2025-04-08T09:34:58Z","year":"2025","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","volume":11,"date_created":"2025-04-06T22:01:32Z","article_processing_charge":"Yes","scopus_import":"1","language":[{"iso":"eng"}],"_id":"19495","publisher":"Springer Nature","article_number":"80","department":[{"_id":"BiCh"}],"author":[{"orcid":"0000-0002-3584-9632","id":"cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9","first_name":"Bingqing","full_name":"Cheng, Bingqing","last_name":"Cheng"}]},{"intvolume":"       310","corr_author":"1","publication":"Mathematische Zeitschrift","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","volume":310,"year":"2025","publication_status":"published","oa":1,"OA_type":"green","publisher":"Springer Nature","language":[{"iso":"eng"}],"_id":"19496","article_processing_charge":"No","scopus_import":"1","date_created":"2025-04-06T22:01:32Z","author":[{"first_name":"Mathieu","id":"7d296fbe-e2c6-11ee-84d3-d5c2945f9a57","last_name":"Helfter","full_name":"Helfter, Mathieu"}],"department":[{"_id":"VaKa"}],"article_number":"15","external_id":{"isi":["001450830300001"],"arxiv":["2206.05231"]},"title":"Scales","OA_place":"repository","quality_controlled":"1","status":"public","date_updated":"2025-09-30T11:31:00Z","article_type":"original","arxiv":1,"abstract":[{"text":"We introduce the notions of scale for sets and measures on metric space by generalizing the usual notions of dimension. Several versions of scales are introduced such as Hausdorff, packing, box, local and quantization. They are defined for different growth, allowing a refined study of infinite dimensional spaces. We prove general theorems comparing the different versions of scales. They are applied to describe geometries of ergodic decompositions, of the Wiener measure and from functional spaces. The first application solves a problem of Berger on the notions of emergence (2020); the second lies in the geometry of the Wiener measure and extends the work of Dereich–Lifshits (2005); the last refines Kolmogorov–Tikhomirov (1958) study on finitely differentiable functions.","lang":"eng"}],"oa_version":"Preprint","day":"01","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2206.05231"}],"isi":1,"date_published":"2025-05-01T00:00:00Z","month":"05","citation":{"ama":"Helfter M. Scales. <i>Mathematische Zeitschrift</i>. 2025;310. doi:<a href=\"https://doi.org/10.1007/s00209-025-03719-5\">10.1007/s00209-025-03719-5</a>","ista":"Helfter M. 2025. Scales. Mathematische Zeitschrift. 310, 15.","short":"M. Helfter, Mathematische Zeitschrift 310 (2025).","apa":"Helfter, M. (2025). Scales. <i>Mathematische Zeitschrift</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s00209-025-03719-5\">https://doi.org/10.1007/s00209-025-03719-5</a>","chicago":"Helfter, Mathieu. “Scales.” <i>Mathematische Zeitschrift</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1007/s00209-025-03719-5\">https://doi.org/10.1007/s00209-025-03719-5</a>.","ieee":"M. Helfter, “Scales,” <i>Mathematische Zeitschrift</i>, vol. 310. Springer Nature, 2025.","mla":"Helfter, Mathieu. “Scales.” <i>Mathematische Zeitschrift</i>, vol. 310, 15, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1007/s00209-025-03719-5\">10.1007/s00209-025-03719-5</a>."},"publication_identifier":{"issn":["0025-5874"],"eissn":["1432-1823"]},"type":"journal_article","doi":"10.1007/s00209-025-03719-5"},{"OA_type":"green","oa":1,"publication_status":"published","year":"2025","volume":42,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publication":"Classical and Quantum Gravity","issue":"7","intvolume":"        42","article_number":"075007","department":[{"_id":"ZoHa"}],"author":[{"first_name":"Ágnes","full_name":"Kis-Tóth, Ágnes","last_name":"Kis-Tóth"},{"full_name":"Haiman, Zoltán","last_name":"Haiman","id":"7c006e8c-cc0d-11ee-8322-cb904ef76f36","orcid":"0000-0003-3633-5403","first_name":"Zoltán"},{"full_name":"Frei, Zsolt","last_name":"Frei","first_name":"Zsolt"}],"date_created":"2025-04-06T22:01:32Z","scopus_import":"1","article_processing_charge":"No","_id":"19497","language":[{"iso":"eng"}],"publisher":"IOP Publishing","article_type":"original","date_updated":"2025-09-30T11:30:11Z","acknowledgement":"We thank Chengcheng Xin and Girish Kulkarni for useful discussions. ZH gratefully acknowledges the hospitality of Eötvös University during an extended sabbatical visit, where this work began. ZH acknowledges support from NSF Grant AST-2006176 and NASA Grants 80NSSC22K0822 and 80NSSC24K0440. ZF acknowledges support from the Hungarian National Research, Development and Innovation Office (NKFIH) through the Institutional Excellence Program No. TKP2021-NKTA-64.","status":"public","quality_controlled":"1","OA_place":"repository","title":"Can quasars, triggered by mergers, account for NANOGrav’s stochastic gravitational wave background?","external_id":{"arxiv":["2412.12726"],"isi":["001448904700001"]},"doi":"10.1088/1361-6382/adbda6","type":"journal_article","citation":{"ieee":"Á. Kis-Tóth, Z. Haiman, and Z. Frei, “Can quasars, triggered by mergers, account for NANOGrav’s stochastic gravitational wave background?,” <i>Classical and Quantum Gravity</i>, vol. 42, no. 7. IOP Publishing, 2025.","mla":"Kis-Tóth, Ágnes, et al. “Can Quasars, Triggered by Mergers, Account for NANOGrav’s Stochastic Gravitational Wave Background?” <i>Classical and Quantum Gravity</i>, vol. 42, no. 7, 075007, IOP Publishing, 2025, doi:<a href=\"https://doi.org/10.1088/1361-6382/adbda6\">10.1088/1361-6382/adbda6</a>.","ama":"Kis-Tóth Á, Haiman Z, Frei Z. Can quasars, triggered by mergers, account for NANOGrav’s stochastic gravitational wave background? <i>Classical and Quantum Gravity</i>. 2025;42(7). doi:<a href=\"https://doi.org/10.1088/1361-6382/adbda6\">10.1088/1361-6382/adbda6</a>","ista":"Kis-Tóth Á, Haiman Z, Frei Z. 2025. Can quasars, triggered by mergers, account for NANOGrav’s stochastic gravitational wave background? Classical and Quantum Gravity. 42(7), 075007.","short":"Á. Kis-Tóth, Z. Haiman, Z. Frei, Classical and Quantum Gravity 42 (2025).","chicago":"Kis-Tóth, Ágnes, Zoltán Haiman, and Zsolt Frei. “Can Quasars, Triggered by Mergers, Account for NANOGrav’s Stochastic Gravitational Wave Background?” <i>Classical and Quantum Gravity</i>. IOP Publishing, 2025. <a href=\"https://doi.org/10.1088/1361-6382/adbda6\">https://doi.org/10.1088/1361-6382/adbda6</a>.","apa":"Kis-Tóth, Á., Haiman, Z., &#38; Frei, Z. (2025). Can quasars, triggered by mergers, account for NANOGrav’s stochastic gravitational wave background? <i>Classical and Quantum Gravity</i>. IOP Publishing. <a href=\"https://doi.org/10.1088/1361-6382/adbda6\">https://doi.org/10.1088/1361-6382/adbda6</a>"},"publication_identifier":{"eissn":["1361-6382"],"issn":["0264-9381"]},"month":"04","date_published":"2025-04-04T00:00:00Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2412.12726"}],"isi":1,"day":"04","arxiv":1,"oa_version":"Preprint","abstract":[{"lang":"eng","text":"The stochastic gravitational wave (GW) background recently discovered by several pulsar timing array experiments is consistent with arising from a population of coalescing super-massive black hole binaries. The amplitude of the background is somewhat higher than expected in most previous population models or from the local mass density observations. Such binaries are expected to be produced in galaxy mergers, which are also thought to trigger bright quasar activity. Under the assumptions that (i) a fraction fbin∼1 of all quasars are associated with mergers, (ii) the typical quasar lifetime is tQ∼108 yr, and (iii) adopting Eddington ratios fEdd∼0.25 for the luminosity of quasars, we compute the GW background associated directly with the empirically measured quasar luminosity function. This approach bypasses the need to model the cosmological evolution of black holes or galaxy mergers from simulations or semi-analytical models. We find the amplitude matching the value measured by NANOGrav. Our results are consistent with most quasars being associated with black hole binaries and being the sources of the GW background, and imply a joint constraint on tQ, fEdd and the typical mass ratio q≡M2/M1. The signal in this case would be dominated by relatively distant ∼109M⊙ sources at z≈2−3, at the peak of quasar activity. Similarly to other models, our results remain in tension with the local super-massive black hole mass density."}]},{"corr_author":"1","intvolume":"       122","publication":"Proceedings of the National Academy of Sciences","issue":"12","file_date_updated":"2025-04-07T11:42:22Z","year":"2025","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","volume":122,"oa":1,"has_accepted_license":"1","OA_type":"hybrid","publication_status":"published","ec_funded":1,"language":[{"iso":"eng"}],"_id":"19499","publisher":"National Academy of Sciences","related_material":{"link":[{"url":"https://github.com/smml1996/algorithm_synthesis","relation":"software"},{"relation":"press_release","description":"News on ISTA website","url":"https://ista.ac.at/en/news/hardware-optimal-quantum-algorithms/"}]},"date_created":"2025-04-06T22:01:32Z","article_processing_charge":"Yes (in subscription journal)","scopus_import":"1","author":[{"full_name":"Muroya Lei, Stefanie","last_name":"Muroya Lei","first_name":"Stefanie","id":"a376de31-8972-11ed-ae7b-d0251c13c8ff"},{"full_name":"Chatterjee, Krishnendu","last_name":"Chatterjee","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","first_name":"Krishnendu","orcid":"0000-0002-4561-241X"},{"id":"40876CD8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2985-7724","first_name":"Thomas A","full_name":"Henzinger, Thomas A","last_name":"Henzinger"}],"article_number":"e2419273122","department":[{"_id":"KrCh"},{"_id":"ToHe"}],"project":[{"grant_number":"863818","call_identifier":"H2020","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","name":"Formal Methods for Stochastic Models: Algorithms and Applications"}],"title":"Hardware-optimal quantum algorithms","external_id":{"isi":["001459435600001"],"pmid":["40106357"]},"status":"public","OA_place":"publisher","quality_controlled":"1","date_updated":"2026-04-28T13:41:14Z","acknowledgement":"We thank the reviewers. In particular, they inspired us to analyze the reset and state-preparation problems, to compute optimal qubit mappings, and to apply our method to a quantum error correction scheme that includes both bitflip and phaseflip corrections. We also thank Raimundo Saona and Marek Chalupa for their time spent in insightful discussions. This research was partially supported by the European Research Council CoG 863818 (ForM-SMArt) grant.","article_type":"original","ddc":["000"],"tmp":{"image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)"},"day":"25","abstract":[{"text":"Quantum hardware is inherently fragile and noisy. We find that the accuracy of traditional quantum error correction algorithms can be improved depending on the hardware. Given different hardware specifications, we automatically synthesize hardware-optimal algorithms for parity correction, qubit resetting, and GHZ (Greenberger–Horne–Zeilinger) state preparation. Using stochastic techniques from computer science, our method presents a computational tool to compute exact accuracy guarantees and synthesize optimal algorithms that are often different from traditional ones. We also show that improvements can be gained with respect to the Qiskit transpiler as we compute the hardware-optimal qubit mapping for the GHZ state-preparation problem.","lang":"eng"}],"oa_version":"Published Version","file":[{"success":1,"file_name":"2025_PNAS_Muroya.pdf","date_updated":"2025-04-07T11:42:22Z","relation":"main_file","access_level":"open_access","creator":"dernst","checksum":"83501b8a65ee5fdd3f5604fc28eddc22","content_type":"application/pdf","file_id":"19524","date_created":"2025-04-07T11:42:22Z","file_size":6805668}],"isi":1,"pmid":1,"date_published":"2025-03-25T00:00:00Z","month":"03","publication_identifier":{"eissn":["1091-6490"],"issn":["0027-8424"]},"citation":{"chicago":"Muroya Lei, Stefanie, Krishnendu Chatterjee, and Thomas A Henzinger. “Hardware-Optimal Quantum Algorithms.” <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences, 2025. <a href=\"https://doi.org/10.1073/pnas.2419273122\">https://doi.org/10.1073/pnas.2419273122</a>.","apa":"Muroya Lei, S., Chatterjee, K., &#38; Henzinger, T. A. (2025). Hardware-optimal quantum algorithms. <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences. <a href=\"https://doi.org/10.1073/pnas.2419273122\">https://doi.org/10.1073/pnas.2419273122</a>","ama":"Muroya Lei S, Chatterjee K, Henzinger TA. Hardware-optimal quantum algorithms. <i>Proceedings of the National Academy of Sciences</i>. 2025;122(12). doi:<a href=\"https://doi.org/10.1073/pnas.2419273122\">10.1073/pnas.2419273122</a>","short":"S. Muroya Lei, K. Chatterjee, T.A. Henzinger, Proceedings of the National Academy of Sciences 122 (2025).","ista":"Muroya Lei S, Chatterjee K, Henzinger TA. 2025. Hardware-optimal quantum algorithms. Proceedings of the National Academy of Sciences. 122(12), e2419273122.","mla":"Muroya Lei, Stefanie, et al. “Hardware-Optimal Quantum Algorithms.” <i>Proceedings of the National Academy of Sciences</i>, vol. 122, no. 12, e2419273122, National Academy of Sciences, 2025, doi:<a href=\"https://doi.org/10.1073/pnas.2419273122\">10.1073/pnas.2419273122</a>.","ieee":"S. Muroya Lei, K. Chatterjee, and T. A. Henzinger, “Hardware-optimal quantum algorithms,” <i>Proceedings of the National Academy of Sciences</i>, vol. 122, no. 12. National Academy of Sciences, 2025."},"doi":"10.1073/pnas.2419273122","type":"journal_article"},{"date_published":"2025-03-20T00:00:00Z","isi":1,"file":[{"content_type":"application/pdf","file_id":"19523","file_size":1366865,"date_created":"2025-04-07T11:21:13Z","success":1,"file_name":"2025_DocumentaMathematica_Erdoes.pdf","date_updated":"2025-04-07T11:21:13Z","relation":"main_file","access_level":"open_access","creator":"dernst","checksum":"97a02d18c05f2b9f2048747b140e7d43"}],"DOAJ_listed":"1","oa_version":"Published Version","arxiv":1,"abstract":[{"text":"We consider the Brown measure of the free circular Brownian motion,  a+t√x , with an arbitrary initial condition  a , i.e.  a  is a general non-normal operator and  x  is a circular element  ∗ -free from  a . We prove that, under a mild assumption on  a , the density of the Brown measure has one of the following two types of behavior around each point on the boundary of its support -- either (i) sharp cut, i.e. a jump discontinuity along the boundary, or (ii) quadratic decay at certain critical points on the boundary. Our result is in direct analogy with the previously known phenomenon for the spectral density of free semicircular Brownian motion, whose singularities are either a square-root edge or a cubic cusp. We also provide several examples and counterexamples, one of which shows that our assumption on  a  is necessary.","lang":"eng"}],"day":"20","doi":"10.4171/DM/999","type":"journal_article","citation":{"short":"L. Erdös, H.C. Ji, Documenta Mathematica 30 (2025) 417–453.","ista":"Erdös L, Ji HC. 2025. Density of Brown measure of free circular Brownian motion. Documenta Mathematica. 30(2), 417–453.","ama":"Erdös L, Ji HC. Density of Brown measure of free circular Brownian motion. <i>Documenta Mathematica</i>. 2025;30(2):417-453. doi:<a href=\"https://doi.org/10.4171/DM/999\">10.4171/DM/999</a>","apa":"Erdös, L., &#38; Ji, H. C. (2025). Density of Brown measure of free circular Brownian motion. <i>Documenta Mathematica</i>. EMS Press. <a href=\"https://doi.org/10.4171/DM/999\">https://doi.org/10.4171/DM/999</a>","chicago":"Erdös, László, and Hong Chang Ji. “Density of Brown Measure of Free Circular Brownian Motion.” <i>Documenta Mathematica</i>. EMS Press, 2025. <a href=\"https://doi.org/10.4171/DM/999\">https://doi.org/10.4171/DM/999</a>.","ieee":"L. Erdös and H. C. Ji, “Density of Brown measure of free circular Brownian motion,” <i>Documenta Mathematica</i>, vol. 30, no. 2. EMS Press, pp. 417–453, 2025.","mla":"Erdös, László, and Hong Chang Ji. “Density of Brown Measure of Free Circular Brownian Motion.” <i>Documenta Mathematica</i>, vol. 30, no. 2, EMS Press, 2025, pp. 417–53, doi:<a href=\"https://doi.org/10.4171/DM/999\">10.4171/DM/999</a>."},"publication_identifier":{"eissn":["1431-0643"],"issn":["1431-0635"]},"month":"03","quality_controlled":"1","OA_place":"publisher","status":"public","external_id":{"isi":["001450119900005"],"arxiv":["2307.08626"]},"page":"417-453","title":"Density of Brown measure of free circular Brownian motion","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"ddc":["510"],"article_type":"original","acknowledgement":"We thank Ping Zhong for pointing out references [15,19] and providing helpful comments. We also thank the anonymous referee for many valuable comments and proposals to streamline the presentation. This work was partially supported by ERC Advanced Grant “RMTBeyond” No. 10102033.","date_updated":"2025-09-30T11:28:02Z","scopus_import":"1","article_processing_charge":"Yes","date_created":"2025-04-06T22:01:32Z","publisher":"EMS Press","language":[{"iso":"eng"}],"_id":"19500","project":[{"name":"Random matrices beyond Wigner-Dyson-Mehta","grant_number":"101020331","_id":"62796744-2b32-11ec-9570-940b20777f1d","call_identifier":"H2020"}],"department":[{"_id":"LaEr"}],"author":[{"orcid":"0000-0001-5366-9603","first_name":"László","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","full_name":"Erdös, László","last_name":"Erdös"},{"first_name":"Hong Chang","full_name":"Ji, Hong Chang","last_name":"Ji"}],"issue":"2","publication":"Documenta Mathematica","intvolume":"        30","corr_author":"1","ec_funded":1,"publication_status":"published","has_accepted_license":"1","OA_type":"gold","oa":1,"volume":30,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","year":"2025","file_date_updated":"2025-04-07T11:21:13Z"},{"arxiv":1,"oa_version":"Preprint","abstract":[{"text":"Alkali dimers, Ak2, located on the surface of a helium nanodroplet, are set into rotation through the polarizability interaction with a nonresonant 1-ps-long laser pulse. The time-dependent degree of alignment is recorded using femtosecond-probe-pulse-induced Coulomb explosion into a pair of Ak+ fragment ions. The results, obtained for Na2, K2, and Rb2 in both the ground state 11Σ+g and the lowest-lying triplet state 13Σ+u, exhibit distinct, periodic revivals with a gradually decreasing amplitude. The dynamics differ from that expected for dimers had they behaved as free rotors. Numerically, we solve the time-dependent rotational Schrödinger equation, including an effective mean-field potential to describe the interaction between the dimer and the droplet. The experimental and simulated alignment dynamics agree well and their comparison enables us to determine the effective rotational constants of the alkali dimers with the exception of Rb2(13Σ+u) that only exhibits a prompt alignment peak but no subsequent revivals. For Na2(13Σ+u), K2(11Σ+g), K2(13Σ+u) and Rb2(11Σ+g), the alignment dynamics are well-described by a 2D rotor model. We ascribe this to a significant confinement of the internuclear axis of these dimers, induced by the orientation-dependent droplet-dimer interaction, to the tangential plane of their residence point on the droplet.","lang":"eng"}],"day":"21","date_published":"2025-03-21T00:00:00Z","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2502.14521"}],"isi":1,"publication_identifier":{"eissn":["2469-9934"],"issn":["2469-9926"]},"citation":{"short":"H.H. Kristensen, L. Kranabetter, A. Ghazaryan, C.A. Schouder, E. Hansen, F. Jensen, R.E. Zillich, M. Lemeshko, H. Stapelfeldt, Physical Review A 111 (2025).","ista":"Kristensen HH, Kranabetter L, Ghazaryan A, Schouder CA, Hansen E, Jensen F, Zillich RE, Lemeshko M, Stapelfeldt H. 2025. Nonadiabatic laser-induced alignment dynamics of alkali-metal dimers on the surface of a helium droplet. Physical Review A. 111(3), 033114.","ama":"Kristensen HH, Kranabetter L, Ghazaryan A, et al. Nonadiabatic laser-induced alignment dynamics of alkali-metal dimers on the surface of a helium droplet. <i>Physical Review A</i>. 2025;111(3). doi:<a href=\"https://doi.org/10.1103/PhysRevA.111.033114\">10.1103/PhysRevA.111.033114</a>","apa":"Kristensen, H. H., Kranabetter, L., Ghazaryan, A., Schouder, C. A., Hansen, E., Jensen, F., … Stapelfeldt, H. (2025). Nonadiabatic laser-induced alignment dynamics of alkali-metal dimers on the surface of a helium droplet. <i>Physical Review A</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevA.111.033114\">https://doi.org/10.1103/PhysRevA.111.033114</a>","chicago":"Kristensen, Henrik H., Lorenz Kranabetter, Areg Ghazaryan, Constant A. Schouder, Emil Hansen, Frank Jensen, Robert E. Zillich, Mikhail Lemeshko, and Henrik Stapelfeldt. “Nonadiabatic Laser-Induced Alignment Dynamics of Alkali-Metal Dimers on the Surface of a Helium Droplet.” <i>Physical Review A</i>. American Physical Society, 2025. <a href=\"https://doi.org/10.1103/PhysRevA.111.033114\">https://doi.org/10.1103/PhysRevA.111.033114</a>.","ieee":"H. H. Kristensen <i>et al.</i>, “Nonadiabatic laser-induced alignment dynamics of alkali-metal dimers on the surface of a helium droplet,” <i>Physical Review A</i>, vol. 111, no. 3. American Physical Society, 2025.","mla":"Kristensen, Henrik H., et al. “Nonadiabatic Laser-Induced Alignment Dynamics of Alkali-Metal Dimers on the Surface of a Helium Droplet.” <i>Physical Review A</i>, vol. 111, no. 3, 033114, American Physical Society, 2025, doi:<a href=\"https://doi.org/10.1103/PhysRevA.111.033114\">10.1103/PhysRevA.111.033114</a>."},"month":"03","type":"journal_article","doi":"10.1103/PhysRevA.111.033114","external_id":{"arxiv":["2502.14521"],"isi":["001459727400007"]},"title":"Nonadiabatic laser-induced alignment dynamics of alkali-metal dimers on the surface of a helium droplet","quality_controlled":"1","OA_place":"repository","status":"public","acknowledgement":"H.S. acknowledges support from the Villum Foundation through a Villum Investigator Grant No. 25886. We thank Jan Thøgersen for expert help with the optics and the laser system.","date_updated":"2025-09-30T11:27:25Z","article_type":"original","publisher":"American Physical Society","language":[{"iso":"eng"}],"_id":"19502","scopus_import":"1","article_processing_charge":"No","date_created":"2025-04-06T22:01:32Z","author":[{"first_name":"Henrik H.","full_name":"Kristensen, Henrik H.","last_name":"Kristensen"},{"first_name":"Lorenz","full_name":"Kranabetter, Lorenz","last_name":"Kranabetter"},{"first_name":"Areg","id":"4AF46FD6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9666-3543","last_name":"Ghazaryan","full_name":"Ghazaryan, Areg"},{"full_name":"Schouder, Constant A.","last_name":"Schouder","first_name":"Constant A."},{"first_name":"Emil","full_name":"Hansen, Emil","last_name":"Hansen"},{"first_name":"Frank","full_name":"Jensen, Frank","last_name":"Jensen"},{"full_name":"Zillich, Robert E.","last_name":"Zillich","first_name":"Robert E."},{"id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6990-7802","first_name":"Mikhail","last_name":"Lemeshko","full_name":"Lemeshko, Mikhail"},{"first_name":"Henrik","full_name":"Stapelfeldt, Henrik","last_name":"Stapelfeldt"}],"department":[{"_id":"MiLe"}],"article_number":"033114","intvolume":"       111","issue":"3","publication":"Physical Review A","volume":111,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","year":"2025","publication_status":"published","OA_type":"green","oa":1},{"page":"559-564","external_id":{"isi":["001449245700001"],"arxiv":["2310.08449"]},"title":"A note on digraph splitting","OA_place":"publisher","quality_controlled":"1","status":"public","acknowledgement":"Funded by SNSF Ambizione grant No. 216071. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No, 101034413. Funded by SNSF grant CRSII5, 173721.","date_updated":"2025-09-30T11:26:00Z","ddc":["510"],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_type":"original","abstract":[{"lang":"eng","text":"A tantalizing open problem, posed independently by Stiebitz in 1995 and by Alon in 1996 and again in 2006, asks whether for every pair of integers  s,t≥1 there exists a finite number  F(s,t)\r\nsuch that the vertex set of every digraph of minimum out-degree at least  F(s,t) can be partitioned into non-empty parts  A  and  B  such that the subdigraphs induced on  A\r\n  and  B  have minimum out-degree at least  s  and  t , respectively.\r\nIn this short note, we prove that if  F(2,2)  exists, then all the numbers  F(s,t)  with  s,t≥1\r\n  exist and satisfy  F(s,t)=Θ(s+t) . In consequence, the problem of Alon and Stiebitz reduces to the case  s=t=2 . Moreover, the numbers  F(s,t)  with  s,t≥2  either all exist and grow linearly, or all of them do not exist."}],"arxiv":1,"oa_version":"Published Version","day":"01","isi":1,"date_published":"2025-07-01T00:00:00Z","file":[{"creator":"dernst","checksum":"98491e59b4f0d05d69f608bbd5706f1a","relation":"main_file","access_level":"open_access","date_updated":"2025-08-05T12:54:06Z","success":1,"file_name":"2025_CombProbComputing_Christoph.pdf","file_size":188818,"date_created":"2025-08-05T12:54:06Z","file_id":"20135","content_type":"application/pdf"}],"month":"07","citation":{"mla":"Christoph, Micha, et al. “A Note on Digraph Splitting.” <i>Combinatorics Probability and Computing</i>, vol. 34, no. 4, Cambridge University Press, 2025, pp. 559–64, doi:<a href=\"https://doi.org/10.1017/S0963548325000045\">10.1017/S0963548325000045</a>.","ieee":"M. Christoph, K. H. Petrova, and R. Steiner, “A note on digraph splitting,” <i>Combinatorics Probability and Computing</i>, vol. 34, no. 4. Cambridge University Press, pp. 559–564, 2025.","apa":"Christoph, M., Petrova, K. H., &#38; Steiner, R. (2025). A note on digraph splitting. <i>Combinatorics Probability and Computing</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/S0963548325000045\">https://doi.org/10.1017/S0963548325000045</a>","chicago":"Christoph, Micha, Kalina H Petrova, and Raphael Steiner. “A Note on Digraph Splitting.” <i>Combinatorics Probability and Computing</i>. Cambridge University Press, 2025. <a href=\"https://doi.org/10.1017/S0963548325000045\">https://doi.org/10.1017/S0963548325000045</a>.","short":"M. Christoph, K.H. Petrova, R. Steiner, Combinatorics Probability and Computing 34 (2025) 559–564.","ama":"Christoph M, Petrova KH, Steiner R. A note on digraph splitting. <i>Combinatorics Probability and Computing</i>. 2025;34(4):559-564. doi:<a href=\"https://doi.org/10.1017/S0963548325000045\">10.1017/S0963548325000045</a>","ista":"Christoph M, Petrova KH, Steiner R. 2025. A note on digraph splitting. Combinatorics Probability and Computing. 34(4), 559–564."},"publication_identifier":{"eissn":["1469-2163"],"issn":["0963-5483"]},"type":"journal_article","doi":"10.1017/S0963548325000045","intvolume":"        34","issue":"4","publication":"Combinatorics Probability and Computing","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","volume":34,"file_date_updated":"2025-08-05T12:54:06Z","year":"2025","publication_status":"published","ec_funded":1,"oa":1,"OA_type":"hybrid","has_accepted_license":"1","publisher":"Cambridge University Press","language":[{"iso":"eng"}],"_id":"19503","article_processing_charge":"Yes (in subscription journal)","scopus_import":"1","date_created":"2025-04-06T22:01:32Z","author":[{"first_name":"Micha","full_name":"Christoph, Micha","last_name":"Christoph"},{"first_name":"Kalina H","id":"554ff4e4-f325-11ee-b0c4-a10dbd523381","last_name":"Petrova","full_name":"Petrova, Kalina H"},{"first_name":"Raphael","last_name":"Steiner","full_name":"Steiner, Raphael"}],"department":[{"_id":"MaKw"}],"project":[{"name":"IST-BRIDGE: International postdoctoral program","grant_number":"101034413","call_identifier":"H2020","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}]},{"file_date_updated":"2025-08-05T12:49:36Z","year":"2025","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","volume":9,"oa":1,"OA_type":"hybrid","has_accepted_license":"1","publication_status":"published","intvolume":"         9","publication":"Nature Astronomy","author":[{"full_name":"Wang, Weichen","last_name":"Wang","first_name":"Weichen"},{"full_name":"Cantalupo, Sebastiano","last_name":"Cantalupo","first_name":"Sebastiano"},{"first_name":"Antonio","full_name":"Pensabene, Antonio","last_name":"Pensabene"},{"last_name":"Galbiati","full_name":"Galbiati, Marta","first_name":"Marta"},{"first_name":"Andrea","full_name":"Travascio, Andrea","last_name":"Travascio"},{"full_name":"Steidel, Charles C.","last_name":"Steidel","first_name":"Charles C."},{"first_name":"Michael V.","full_name":"Maseda, Michael V.","last_name":"Maseda"},{"full_name":"Pezzulli, Gabriele","last_name":"Pezzulli","first_name":"Gabriele"},{"full_name":"De Beer, Stephanie","last_name":"De Beer","first_name":"Stephanie"},{"last_name":"Fossati","full_name":"Fossati, Matteo","first_name":"Matteo"},{"first_name":"Michele","full_name":"Fumagalli, Michele","last_name":"Fumagalli"},{"first_name":"Sofia G.","full_name":"Gallego, Sofia G.","last_name":"Gallego"},{"full_name":"Lazeyras, Titouan","last_name":"Lazeyras","first_name":"Titouan"},{"first_name":"Ruari","full_name":"Mackenzie, Ruari","last_name":"Mackenzie"},{"last_name":"Matthee","full_name":"Matthee, Jorryt J","first_name":"Jorryt J","id":"7439a258-f3c0-11ec-9501-9df22fe06720","orcid":"0000-0003-2871-127X"},{"first_name":"Themiya","full_name":"Nanayakkara, Themiya","last_name":"Nanayakkara"},{"last_name":"Quadri","full_name":"Quadri, Giada","first_name":"Giada"}],"department":[{"_id":"JoMa"}],"language":[{"iso":"eng"}],"_id":"19504","publisher":"Springer Nature","date_created":"2025-04-06T22:01:32Z","article_processing_charge":"No","scopus_import":"1","date_updated":"2025-09-30T11:25:14Z","acknowledgement":"We thank B. Wang, P. Madau, M. Dotti, A. de la Vega, Y. Guo, C. Bacchini, Z. Cai, C. Conselice, A. Dekel, S. Faber, F. Fraternali, L. Ho, F. Jiang, S. Kassin, D. Koo, N. Mandelker, S. Mao and D. Xu for the valuable and insightful discussions regarding the research topics relevant to this paper. This project was supported by the European Research Council (ERC) Consolidator Grant no. 864361 (CosmicWeb). A.P. acknowledges the support from Fondazione Cariplo grant no. 2020-0902. M.V.M. acknowledges funding from NASA by means of HST-GO-17065. T.N. acknowledges support from Australian Research Council Laureate Fellowship FL180100060. This work is based in part on observations made with the NASA/ESA/CSA James Webb Space Telescope. The data were obtained from the Mikulski Archive for Space Telescopes at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127 for JWST. These observations are associated with programme no. 1835. Support for programme no. 1835 was provided by NASA through a grant from the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127. This research is based on observations made with the NASA/ESA Hubble Space Telescope obtained from the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-26555. These observations are associated with programme 17065. ALMA is a partnership of ESO (representing its member states), NSF (USA) and NINS (Japan), together with NRC (Canada), MOST and ASIAA (Taiwan), and KASI (Republic of Korea), in cooperation with the Republic of Chile. The Joint ALMA Observatory is operated by ESO, AUI/NRAO and NAOJ. The scientific results reported in this article are based in part on observations made by the Chandra X-ray Observatory. This work is also based on observations collected at the European Southern Observatory under ESO programme 110.23ZX.","article_type":"original","ddc":["520"],"tmp":{"image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)"},"title":"A giant disk galaxy two billion years after the Big Bang","page":"710-719","external_id":{"arxiv":["2409.17956"],"isi":["001447477100001"],"pmid":["40417329"]},"status":"public","OA_place":"publisher","quality_controlled":"1","month":"03","citation":{"apa":"Wang, W., Cantalupo, S., Pensabene, A., Galbiati, M., Travascio, A., Steidel, C. C., … Quadri, G. (2025). A giant disk galaxy two billion years after the Big Bang. <i>Nature Astronomy</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41550-025-02500-2\">https://doi.org/10.1038/s41550-025-02500-2</a>","chicago":"Wang, Weichen, Sebastiano Cantalupo, Antonio Pensabene, Marta Galbiati, Andrea Travascio, Charles C. Steidel, Michael V. Maseda, et al. “A Giant Disk Galaxy Two Billion Years after the Big Bang.” <i>Nature Astronomy</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41550-025-02500-2\">https://doi.org/10.1038/s41550-025-02500-2</a>.","ista":"Wang W, Cantalupo S, Pensabene A, Galbiati M, Travascio A, Steidel CC, Maseda MV, Pezzulli G, De Beer S, Fossati M, Fumagalli M, Gallego SG, Lazeyras T, Mackenzie R, Matthee JJ, Nanayakkara T, Quadri G. 2025. A giant disk galaxy two billion years after the Big Bang. Nature Astronomy. 9, 710–719.","ama":"Wang W, Cantalupo S, Pensabene A, et al. A giant disk galaxy two billion years after the Big Bang. <i>Nature Astronomy</i>. 2025;9:710-719. doi:<a href=\"https://doi.org/10.1038/s41550-025-02500-2\">10.1038/s41550-025-02500-2</a>","short":"W. Wang, S. Cantalupo, A. Pensabene, M. Galbiati, A. Travascio, C.C. Steidel, M.V. Maseda, G. Pezzulli, S. De Beer, M. Fossati, M. Fumagalli, S.G. Gallego, T. Lazeyras, R. Mackenzie, J.J. Matthee, T. Nanayakkara, G. Quadri, Nature Astronomy 9 (2025) 710–719.","mla":"Wang, Weichen, et al. “A Giant Disk Galaxy Two Billion Years after the Big Bang.” <i>Nature Astronomy</i>, vol. 9, Springer Nature, 2025, pp. 710–19, doi:<a href=\"https://doi.org/10.1038/s41550-025-02500-2\">10.1038/s41550-025-02500-2</a>.","ieee":"W. Wang <i>et al.</i>, “A giant disk galaxy two billion years after the Big Bang,” <i>Nature Astronomy</i>, vol. 9. Springer Nature, pp. 710–719, 2025."},"publication_identifier":{"eissn":["2397-3366"]},"doi":"10.1038/s41550-025-02500-2","type":"journal_article","day":"17","abstract":[{"lang":"eng","text":"Observational studies have shown that galaxy disks were already in place in the first few billion years of the Universe. The early disks detected so far, with typical half-light radii of 3 kpc at stellar masses around 1011 M⊙ for redshift z ≈ 3, are significantly smaller than today’s disks with similar masses, which is in agreement with expectations from current galaxy models. Here we report observations of a giant disk at z = 3.25, when the Universe was only two billion years old, with a half-light radius of 9.6 kpc and stellar mass of (math formular). This galaxy is larger than any other kinematically confirmed disks at similar epochs and is surprisingly similar to today’s largest disks with regard to size and mass. James Webb Space Telescope imaging and spectroscopy reveal its spiral morphology and a rotational velocity consistent with a local Tully–Fisher relationship. Multiwavelength observations show that it lies in an exceptionally dense environment, where the galaxy number density is more than ten times higher than the cosmic average and mergers are frequent. The discovery of such a giant disk suggests the presence of favourable physical conditions for large-disk formation in dense environments in the early Universe, which may include efficient accretion of gas carrying coherent angular momentum and non-destructive mergers between exceptionally gas-rich progenitor galaxies."}],"oa_version":"Published Version","arxiv":1,"file":[{"date_created":"2025-08-05T12:49:36Z","file_size":4912850,"file_id":"20134","content_type":"application/pdf","checksum":"a0e65fe3374bd755b18ba03fd5e42a3f","creator":"dernst","access_level":"open_access","relation":"main_file","date_updated":"2025-08-05T12:49:36Z","success":1,"file_name":"2025_NatureAstronomy_Wang.pdf"}],"isi":1,"date_published":"2025-03-17T00:00:00Z","pmid":1},{"author":[{"full_name":"Agresti, Antonio","last_name":"Agresti","id":"673cd0cc-9b9a-11eb-b144-88f30e1fbb72","orcid":"0000-0002-9573-2962","first_name":"Antonio"},{"full_name":"Hieber, Matthias","last_name":"Hieber","first_name":"Matthias"},{"last_name":"Hussein","full_name":"Hussein, Amru","first_name":"Amru"},{"full_name":"Saal, Martin","last_name":"Saal","first_name":"Martin"}],"project":[{"name":"Bridging Scales in Random Materials","grant_number":"948819","call_identifier":"H2020","_id":"0aa76401-070f-11eb-9043-b5bb049fa26d"}],"department":[{"_id":"JuFi"}],"publisher":"Institute of Mathematical Statistics","_id":"19505","language":[{"iso":"eng"}],"scopus_import":"1","article_processing_charge":"No","date_created":"2025-04-06T22:01:32Z","volume":35,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","year":"2025","ec_funded":1,"publication_status":"published","OA_type":"green","oa":1,"intvolume":"        35","issue":"1","publication":"Annals of Applied Probability","publication_identifier":{"issn":["1050-5164"]},"citation":{"ama":"Agresti A, Hieber M, Hussein A, Saal M. The stochastic primitive equations with nonisothermal turbulent pressure. <i>Annals of Applied Probability</i>. 2025;35(1):635-700. doi:<a href=\"https://doi.org/10.1214/24-AAP2124\">10.1214/24-AAP2124</a>","ista":"Agresti A, Hieber M, Hussein A, Saal M. 2025. The stochastic primitive equations with nonisothermal turbulent pressure. Annals of Applied Probability. 35(1), 635–700.","short":"A. Agresti, M. Hieber, A. Hussein, M. Saal, Annals of Applied Probability 35 (2025) 635–700.","chicago":"Agresti, Antonio, Matthias Hieber, Amru Hussein, and Martin Saal. “The Stochastic Primitive Equations with Nonisothermal Turbulent Pressure.” <i>Annals of Applied Probability</i>. Institute of Mathematical Statistics, 2025. <a href=\"https://doi.org/10.1214/24-AAP2124\">https://doi.org/10.1214/24-AAP2124</a>.","apa":"Agresti, A., Hieber, M., Hussein, A., &#38; Saal, M. (2025). The stochastic primitive equations with nonisothermal turbulent pressure. <i>Annals of Applied Probability</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/24-AAP2124\">https://doi.org/10.1214/24-AAP2124</a>","ieee":"A. Agresti, M. Hieber, A. Hussein, and M. Saal, “The stochastic primitive equations with nonisothermal turbulent pressure,” <i>Annals of Applied Probability</i>, vol. 35, no. 1. Institute of Mathematical Statistics, pp. 635–700, 2025.","mla":"Agresti, Antonio, et al. “The Stochastic Primitive Equations with Nonisothermal Turbulent Pressure.” <i>Annals of Applied Probability</i>, vol. 35, no. 1, Institute of Mathematical Statistics, 2025, pp. 635–700, doi:<a href=\"https://doi.org/10.1214/24-AAP2124\">10.1214/24-AAP2124</a>."},"month":"02","type":"journal_article","doi":"10.1214/24-AAP2124","abstract":[{"text":"In this paper, we introduce and study the primitive equations with non-isothermal turbulent pressure and transport noise. They are derived from the Navier–Stokes equations by employing stochastic versions of the Boussinesq and the hydrostatic approximations. The temperature dependence of the turbulent pressure can be seen as a consequence of an additive noise acting on the small vertical dynamics. For such a model we prove global well-posedness in H^1 where the noise is considered in both the Itô and Stratonovich formulations. Compared to previous variants of the primitive equations, the one considered here presents a more intricate coupling between the velocity field and the temperature. The corresponding analysis is seriously more involved than in the deterministic setting. Finally, the continuous dependence on the initial data and the energy estimates proven here are new, even in the case of isothermal turbulent pressure.","lang":"eng"}],"oa_version":"Preprint","arxiv":1,"day":"01","date_published":"2025-02-01T00:00:00Z","isi":1,"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2210.05973","open_access":"1"}],"acknowledgement":"The first author thanks Umberto Pappalettera for helpful suggestions on Section 2 and for bringing to his attention the reference [56]. The first author is grateful to Marco Romito for helpful comments related to Remarks 2.1 and 2.2. Finally, the first author thanks Caterina Balzotti for her support in creating the picture.\r\nAntonio Agresti has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No 948819). Antonio Agresti is a member of GNAMPA (INδAM).\r\nMatthias Hieber gratefully acknowledges the support by the Deutsche Forschungsgemeinschaft (DFG) through the Research Unit 5528—project number 500072446.\r\nAmru Hussein has been supported by Deutsche Forschungsgemeinschaft (DFG)—project\r\nnumber 508634462 and by MathApp—Mathematics Applied to Real-World Problems—part\r\nof the Research Initiative of the Federal State of Rhineland-Palatinate, Germany.\r\nMartin Saal has been supported by Deutsche Forschungsgemeinschaft (DFG)—project\r\nnumber 429483464.","date_updated":"2025-09-30T11:23:58Z","article_type":"original","external_id":{"isi":["001434322900016"],"arxiv":["2210.05973"]},"page":"635-700","title":"The stochastic primitive equations with nonisothermal turbulent pressure","quality_controlled":"1","OA_place":"repository","status":"public"},{"article_processing_charge":"Yes (via OA deal)","scopus_import":"1","related_material":{"link":[{"description":"News on ISTA website","relation":"press_release","url":"https://ista.ac.at/en/news/how-sleep-keeps-our-memories-fresh/"}]},"date_created":"2025-04-06T22:01:32Z","publisher":"Elsevier","language":[{"iso":"eng"}],"_id":"19506","department":[{"_id":"JoCs"}],"project":[{"_id":"257A4776-B435-11E9-9278-68D0E5697425","grant_number":"281511","call_identifier":"FP7","name":"Memory-related information processing in neuronal circuits of the hippocampus and entorhinal cortex"},{"name":"Interneuro plasticity during spatial learning","grant_number":"I 3713-B27","_id":"2654F984-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"}],"author":[{"full_name":"Bollmann, Lars","last_name":"Bollmann","first_name":"Lars","id":"47AD3038-F248-11E8-B48F-1D18A9856A87"},{"id":"361CC00E-F248-11E8-B48F-1D18A9856A87","first_name":"Peter","full_name":"Baracskay, Peter","last_name":"Baracskay"},{"full_name":"Stella, Federico","last_name":"Stella","orcid":"0000-0001-9439-3148","first_name":"Federico","id":"39AF1E74-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Csicsvari, Jozsef L","last_name":"Csicsvari","first_name":"Jozsef L","id":"3FA14672-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5193-4036"}],"issue":"9","publication":"Neuron","corr_author":"1","intvolume":"       113","publication_status":"published","PlanS_conform":"1","ec_funded":1,"oa":1,"has_accepted_license":"1","OA_type":"hybrid","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","volume":113,"file_date_updated":"2025-08-05T12:43:44Z","year":"2025","isi":1,"date_published":"2025-05-07T00:00:00Z","pmid":1,"file":[{"file_size":27047730,"date_created":"2025-08-05T12:43:44Z","content_type":"application/pdf","file_id":"20133","access_level":"open_access","relation":"main_file","checksum":"5e57852a45a78a751dd3a5e807bf015f","creator":"dernst","success":1,"file_name":"2025_Neuron_Bollmann.pdf","date_updated":"2025-08-05T12:43:44Z"}],"abstract":[{"text":"Hippocampal reactivation of waking neuronal assemblies in sleep is a key initial step of systems consolidation. Nevertheless, it is unclear whether reactivated assemblies are static or whether they reorganize gradually over prolonged sleep. We tracked reactivated CA1 assembly patterns over ∼20 h of sleep/rest periods and related them to assemblies seen before or after in a spatial learning paradigm using rats. We found that reactivated assembly patterns were gradually transformed and started to resemble those seen in the subsequent recall session. Periods of rapid eye movement (REM) sleep and non-REM (NREM) had antagonistic roles: whereas NREM accelerated the assembly drift, REM countered it. Moreover, only a subset of rate-changing pyramidal cells contributed to the drift, whereas stable-firing-rate cells maintained unaltered reactivation patterns. Our data suggest that prolonged sleep promotes the spontaneous reorganization of spatial assemblies, which can contribute to daily cognitive map changes or encoding new learning situations.","lang":"eng"}],"oa_version":"Published Version","day":"07","doi":"10.1016/j.neuron.2025.02.025","type":"journal_article","month":"05","publication_identifier":{"issn":["0896-6273"],"eissn":["1097-4199"]},"citation":{"ieee":"L. Bollmann, P. Baracskay, F. Stella, and J. L. Csicsvari, “Sleep stages antagonistically modulate reactivation drift,” <i>Neuron</i>, vol. 113, no. 9. Elsevier, p. 1446–1459.e6, 2025.","mla":"Bollmann, Lars, et al. “Sleep Stages Antagonistically Modulate Reactivation Drift.” <i>Neuron</i>, vol. 113, no. 9, Elsevier, 2025, p. 1446–1459.e6, doi:<a href=\"https://doi.org/10.1016/j.neuron.2025.02.025\">10.1016/j.neuron.2025.02.025</a>.","short":"L. Bollmann, P. Baracskay, F. Stella, J.L. Csicsvari, Neuron 113 (2025) 1446–1459.e6.","ama":"Bollmann L, Baracskay P, Stella F, Csicsvari JL. Sleep stages antagonistically modulate reactivation drift. <i>Neuron</i>. 2025;113(9):1446-1459.e6. doi:<a href=\"https://doi.org/10.1016/j.neuron.2025.02.025\">10.1016/j.neuron.2025.02.025</a>","ista":"Bollmann L, Baracskay P, Stella F, Csicsvari JL. 2025. Sleep stages antagonistically modulate reactivation drift. Neuron. 113(9), 1446–1459.e6.","apa":"Bollmann, L., Baracskay, P., Stella, F., &#38; Csicsvari, J. L. (2025). Sleep stages antagonistically modulate reactivation drift. <i>Neuron</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.neuron.2025.02.025\">https://doi.org/10.1016/j.neuron.2025.02.025</a>","chicago":"Bollmann, Lars, Peter Baracskay, Federico Stella, and Jozsef L Csicsvari. “Sleep Stages Antagonistically Modulate Reactivation Drift.” <i>Neuron</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.neuron.2025.02.025\">https://doi.org/10.1016/j.neuron.2025.02.025</a>."},"OA_place":"publisher","quality_controlled":"1","status":"public","page":"1446-1459.e6","external_id":{"pmid":["40132588"],"isi":["001510440400001"]},"title":"Sleep stages antagonistically modulate reactivation drift","ddc":["570"],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"article_type":"original","acknowledgement":"We thank Andrea Cumpelik, Lisa Genzel, and Freya Ólafsdóttir for comments on an earlier version of the manuscript. This work was supported by the European Research Council (281511) and Austrian Science Fund (FWF I3713).","date_updated":"2026-04-28T13:39:22Z"},{"department":[{"_id":"EdHa"}],"author":[{"first_name":"Marianne S.","last_name":"Andersen","full_name":"Andersen, Marianne S."},{"first_name":"Svetlana","full_name":"Ulyanchenko, Svetlana","last_name":"Ulyanchenko"},{"first_name":"Pawel J.","full_name":"Schweiger, Pawel J.","last_name":"Schweiger"},{"first_name":"Edouard B","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6005-1561","last_name":"Hannezo","full_name":"Hannezo, Edouard B"},{"last_name":"Simons","full_name":"Simons, Benjamin D.","first_name":"Benjamin D."},{"full_name":"Jensen, Kim B.","last_name":"Jensen","first_name":"Kim B."}],"article_processing_charge":"No","scopus_import":"1","date_created":"2025-04-06T22:01:32Z","publisher":"Elsevier","_id":"19507","language":[{"iso":"eng"}],"publication_status":"published","oa":1,"OA_type":"hybrid","has_accepted_license":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":145,"file_date_updated":"2025-12-29T14:13:01Z","year":"2025","issue":"9","publication":"Journal of Investigative Dermatology","intvolume":"       145","corr_author":"1","doi":"10.1016/j.jid.2025.01.034","type":"journal_article","month":"09","publication_identifier":{"issn":["0022-202X"],"eissn":["1523-1747"]},"citation":{"ieee":"M. S. Andersen, S. Ulyanchenko, P. J. Schweiger, E. B. Hannezo, B. D. Simons, and K. B. Jensen, “Spatiotemporal switches in progenitor cell fate govern upper hair follicle growth and maintenance,” <i>Journal of Investigative Dermatology</i>, vol. 145, no. 9. Elsevier, p. 2191–2202.e5, 2025.","mla":"Andersen, Marianne S., et al. “Spatiotemporal Switches in Progenitor Cell Fate Govern Upper Hair Follicle Growth and Maintenance.” <i>Journal of Investigative Dermatology</i>, vol. 145, no. 9, Elsevier, 2025, p. 2191–2202.e5, doi:<a href=\"https://doi.org/10.1016/j.jid.2025.01.034\">10.1016/j.jid.2025.01.034</a>.","ama":"Andersen MS, Ulyanchenko S, Schweiger PJ, Hannezo EB, Simons BD, Jensen KB. Spatiotemporal switches in progenitor cell fate govern upper hair follicle growth and maintenance. <i>Journal of Investigative Dermatology</i>. 2025;145(9):2191-2202.e5. doi:<a href=\"https://doi.org/10.1016/j.jid.2025.01.034\">10.1016/j.jid.2025.01.034</a>","ista":"Andersen MS, Ulyanchenko S, Schweiger PJ, Hannezo EB, Simons BD, Jensen KB. 2025. Spatiotemporal switches in progenitor cell fate govern upper hair follicle growth and maintenance. Journal of Investigative Dermatology. 145(9), 2191–2202.e5.","short":"M.S. Andersen, S. Ulyanchenko, P.J. Schweiger, E.B. Hannezo, B.D. Simons, K.B. Jensen, Journal of Investigative Dermatology 145 (2025) 2191–2202.e5.","apa":"Andersen, M. S., Ulyanchenko, S., Schweiger, P. J., Hannezo, E. B., Simons, B. D., &#38; Jensen, K. B. (2025). Spatiotemporal switches in progenitor cell fate govern upper hair follicle growth and maintenance. <i>Journal of Investigative Dermatology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jid.2025.01.034\">https://doi.org/10.1016/j.jid.2025.01.034</a>","chicago":"Andersen, Marianne S., Svetlana Ulyanchenko, Pawel J. Schweiger, Edouard B Hannezo, Benjamin D. Simons, and Kim B. Jensen. “Spatiotemporal Switches in Progenitor Cell Fate Govern Upper Hair Follicle Growth and Maintenance.” <i>Journal of Investigative Dermatology</i>. Elsevier, 2025. <a href=\"https://doi.org/10.1016/j.jid.2025.01.034\">https://doi.org/10.1016/j.jid.2025.01.034</a>."},"isi":1,"date_published":"2025-09-01T00:00:00Z","pmid":1,"file":[{"file_size":7301679,"date_created":"2025-12-29T14:13:01Z","file_id":"20874","content_type":"application/pdf","creator":"dernst","checksum":"a2b313de3cacb53f20f2b91c42612ad9","relation":"main_file","access_level":"open_access","date_updated":"2025-12-29T14:13:01Z","success":1,"file_name":"2025_JourInvestigativeDerma_Andersen.pdf"}],"oa_version":"Published Version","abstract":[{"lang":"eng","text":"The epidermis provides a protective barrier against hostile environments. However, our knowledge of how this barrier forms during development and is subsequently maintained remains incomplete. The infundibulum is a cylindrical epidermal tissue compartment that serves as an outlet for hair follicles protruding from the skin and the excretion of the sebaceous glands that are essential for proper skin function. In this study, we applied quantitative fate mapping to address how infundibulum are maintained during adulthood. We demonstrate that progenitors build and maintain tissues through stochastic cell fate choices. Long-term analysis identified a preferential transient contribution from cells initially located at the bottom of the structure to the maintenance of the tissue, with bursts of local progenitor expansion associated with the phases of hair growth. Beyond providing compartment-wide insights into progenitor cell dynamics in infundibulum, these findings demonstrate how spatiotemporal regulation controls transient progenitor dominance."}],"day":"01","ddc":["570"],"tmp":{"image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)"},"article_type":"original","acknowledgement":"We thank the members of the Jensen Laboratory for experimental and technical advice, the imaging facilities at reNEW, and animal caretakers for expert assistance. This work was supported by the Lundbeck Foundation (R105-A9755 to KBJ) and the Leo Pharma Foundation (LF-OC-20-000169). The Novo Nordisk Foundation Center for Stem Cell Medicine was supported by a Novo Nordisk Foundation grant (NNF21CC0073729). B.D.S. was supported by the Wellcome Trust (219478/Z/19/Z) and a Royal Society EP Abraham Research Professorship (RP/R1/180165 and RP\\R\\231004). Figure elements were adapted from Bio-Render. KBJ is the lead contact and guarantor of this study.","date_updated":"2025-12-29T14:13:43Z","OA_place":"publisher","quality_controlled":"1","status":"public","page":"2191-2202.e5","external_id":{"isi":["001604396400001"],"pmid":["40010488"]},"title":"Spatiotemporal switches in progenitor cell fate govern upper hair follicle growth and maintenance"},{"day":"14","abstract":[{"lang":"eng","text":"NRF2 is a transcription factor responsible for coordinating the expression of over a thousand cytoprotective genes. Although NRF2 is constitutively expressed, its stability is modulated by the redox-sensitive protein KEAP1 and other conditional binding partner regulators. The new era of NRF2 research has highlighted the cooperation between NRF2 and PIN1 in modifying its cytoprotective effect. Despite numerous studies, the understanding of the PIN1-NRF2 interaction remains limited. Herein, we described the binding interaction of PIN1 and three different 14-mer long phospho-peptides mimicking NRF2 protein using computer-based, biophysical, and biochemical approaches. According to our computational analyses, the residues positioned in the WW domain of PIN1 (Ser16, Arg17, Ser18, Tyr23, Ser32, Gln33, and Trp34) were found to be crucial for PIN1-NRF2 interactions. Biophysical FP assays were used to verify the computational prediction. The data demonstrated that Pintide, a peptide predominantly interacting with the PIN1 WW-domain, led to a significant reduction in the binding affinity of the NRF2 mimicking peptides. Moreover, we evaluated the impact of known PIN1 inhibitors (juglone, KPT-6566, and EGCG) on the PIN1-NRF2 interaction. Among the inhibitors, KPT-6566 showed the most potent inhibitory effect on PIN1-NRF2 interaction within an IC<jats:sub>50</jats:sub> range of 0.3–1.4 µM. Furthermore, our mass spectrometry analyses showed that KPT-6566 appeared to covalently modify PIN1 via conjugate addition, rather than disulfide exchange of the sulfonyl-acetate moiety. Altogether, such inhibitors would also be highly valuable molecular probes for further investigation of PIN1 regulation of NRF2 in the cellular context and potentially pave the way for drug molecules that specifically inhibit the cytoprotective effects of NRF2 in cancer."}],"oa_version":"Published Version","DOAJ_listed":"1","file":[{"file_name":"2025_ScientificReports_Ozleyen.pdf","success":1,"date_updated":"2025-04-10T06:21:11Z","relation":"main_file","access_level":"open_access","creator":"dernst","checksum":"6124a10402a67b66364cfa9350d35b4b","content_type":"application/pdf","file_id":"19537","date_created":"2025-04-10T06:21:11Z","file_size":5333058}],"isi":1,"pmid":1,"date_published":"2025-03-14T00:00:00Z","month":"03","publication_identifier":{"eissn":["2045-2322"]},"citation":{"mla":"Ozleyen, Adem, et al. “Identification and Inhibition of PIN1-NRF2 Protein–Protein Interactions through Computational and Biophysical Approaches.” <i>Scientific Reports</i>, vol. 15, 8907, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1038/s41598-025-89342-0\">10.1038/s41598-025-89342-0</a>.","ieee":"A. Ozleyen, G. N. Duran, S. Dönmez, M. Ozbil, R. G. Doveston, and T. B. Tumer, “Identification and inhibition of PIN1-NRF2 protein–protein interactions through computational and biophysical approaches,” <i>Scientific Reports</i>, vol. 15. Springer Nature, 2025.","apa":"Ozleyen, A., Duran, G. N., Dönmez, S., Ozbil, M., Doveston, R. G., &#38; Tumer, T. B. (2025). Identification and inhibition of PIN1-NRF2 protein–protein interactions through computational and biophysical approaches. <i>Scientific Reports</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41598-025-89342-0\">https://doi.org/10.1038/s41598-025-89342-0</a>","chicago":"Ozleyen, Adem, Gizem Nur Duran, Serhat Dönmez, Mehmet Ozbil, Richard G. Doveston, and Tugba Boyunegmez Tumer. “Identification and Inhibition of PIN1-NRF2 Protein–Protein Interactions through Computational and Biophysical Approaches.” <i>Scientific Reports</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41598-025-89342-0\">https://doi.org/10.1038/s41598-025-89342-0</a>.","ista":"Ozleyen A, Duran GN, Dönmez S, Ozbil M, Doveston RG, Tumer TB. 2025. Identification and inhibition of PIN1-NRF2 protein–protein interactions through computational and biophysical approaches. Scientific Reports. 15, 8907.","short":"A. Ozleyen, G.N. Duran, S. Dönmez, M. Ozbil, R.G. Doveston, T.B. Tumer, Scientific Reports 15 (2025).","ama":"Ozleyen A, Duran GN, Dönmez S, Ozbil M, Doveston RG, Tumer TB. Identification and inhibition of PIN1-NRF2 protein–protein interactions through computational and biophysical approaches. <i>Scientific Reports</i>. 2025;15. doi:<a href=\"https://doi.org/10.1038/s41598-025-89342-0\">10.1038/s41598-025-89342-0</a>"},"doi":"10.1038/s41598-025-89342-0","type":"journal_article","title":"Identification and inhibition of PIN1-NRF2 protein–protein interactions through computational and biophysical approaches","external_id":{"isi":["001445507400002"],"pmid":["40087364"]},"status":"public","OA_place":"publisher","quality_controlled":"1","date_updated":"2025-09-30T11:33:37Z","acknowledgement":"The authors would like to thank the Ministry of National Education of Republic of Türkiye within the scope of the YLSY scholarship program for funding (AO). This article is based upon work from COST Action CA20121, supported by COST (European Cooperation in Science and Technology) (www.cost.eu) (https://benbedphar.org/about-benbedphar/). The molecular dynamics simulations reported in this paper were performed at TUBITAK ULAKBIM, High Performance and Grid Computing Center (TRUBA resources). The authors thank Dr Sharad Mistry for his support in acquiring and processing the MS data.","article_type":"original","ddc":["570"],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"language":[{"iso":"eng"}],"_id":"19529","publisher":"Springer Nature","date_created":"2025-04-08T11:12:20Z","article_processing_charge":"Yes","scopus_import":"1","author":[{"first_name":"Adem","last_name":"Ozleyen","full_name":"Ozleyen, Adem"},{"first_name":"Gizem Nur","full_name":"Duran, Gizem Nur","last_name":"Duran"},{"id":"7c624079-3200-11ee-973b-9fcc8a575580","first_name":"Serhat","last_name":"Dönmez","full_name":"Dönmez, Serhat"},{"first_name":"Mehmet","last_name":"Ozbil","full_name":"Ozbil, Mehmet"},{"last_name":"Doveston","full_name":"Doveston, Richard G.","first_name":"Richard G."},{"last_name":"Tumer","full_name":"Tumer, Tugba Boyunegmez","first_name":"Tugba Boyunegmez"}],"article_number":"8907","department":[{"_id":"LeSa"}],"intvolume":"        15","publication":"Scientific Reports","file_date_updated":"2025-04-10T06:21:11Z","year":"2025","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","volume":15,"oa":1,"OA_type":"gold","has_accepted_license":"1","publication_status":"published"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","volume":10,"file_date_updated":"2025-04-10T06:12:49Z","year":"2025","publication_status":"published","oa":1,"OA_type":"gold","has_accepted_license":"1","corr_author":"1","intvolume":"        10","publication":"npj Quantum Materials","author":[{"id":"5e9a6931-eb97-11eb-a6c2-e96f7058d77a","first_name":"Abhishek","last_name":"Shiva Kumar","full_name":"Shiva Kumar, Abhishek"},{"full_name":"Maslov, Mikhail","last_name":"Maslov","orcid":"0000-0003-4074-2570","id":"2E65BB0E-F248-11E8-B48F-1D18A9856A87","first_name":"Mikhail"},{"id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","first_name":"Mikhail","orcid":"0000-0002-6990-7802","last_name":"Lemeshko","full_name":"Lemeshko, Mikhail"},{"id":"37D278BC-F248-11E8-B48F-1D18A9856A87","first_name":"Artem","orcid":"0000-0003-0393-5525","last_name":"Volosniev","full_name":"Volosniev, Artem"},{"last_name":"Alpichshev","full_name":"Alpichshev, Zhanybek","first_name":"Zhanybek","id":"45E67A2A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7183-5203"}],"department":[{"_id":"GradSch"},{"_id":"ZhAl"},{"_id":"MiLe"}],"project":[{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"}],"article_number":"37","publisher":"Springer Nature","_id":"19531","language":[{"iso":"eng"}],"article_processing_charge":"Yes","scopus_import":"1","related_material":{"link":[{"relation":"software","url":"https://git.ista.ac.at/mmaslov/dirac_pauli_LHP"}]},"date_created":"2025-04-08T18:13:06Z","date_updated":"2026-05-06T13:06:08Z","ddc":["530"],"tmp":{"image":"/images/cc_by_nc_nd.png","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)"},"article_type":"original","APC_amount":"3054 EUR","external_id":{"isi":["001459830100002"]},"title":"Massive Dirac-Pauli physics in lead-halide perovskites","OA_place":"publisher","quality_controlled":"1","status":"public","month":"04","citation":{"ieee":"A. Shiva Kumar, M. Maslov, M. Lemeshko, A. Volosniev, and Z. Alpichshev, “Massive Dirac-Pauli physics in lead-halide perovskites,” <i>npj Quantum Materials</i>, vol. 10. Springer Nature, 2025.","mla":"Shiva Kumar, Abhishek, et al. “Massive Dirac-Pauli Physics in Lead-Halide Perovskites.” <i>Npj Quantum Materials</i>, vol. 10, 37, Springer Nature, 2025, doi:<a href=\"https://doi.org/10.1038/s41535-025-00754-7\">10.1038/s41535-025-00754-7</a>.","ama":"Shiva Kumar A, Maslov M, Lemeshko M, Volosniev A, Alpichshev Z. Massive Dirac-Pauli physics in lead-halide perovskites. <i>npj Quantum Materials</i>. 2025;10. doi:<a href=\"https://doi.org/10.1038/s41535-025-00754-7\">10.1038/s41535-025-00754-7</a>","short":"A. Shiva Kumar, M. Maslov, M. Lemeshko, A. Volosniev, Z. Alpichshev, Npj Quantum Materials 10 (2025).","ista":"Shiva Kumar A, Maslov M, Lemeshko M, Volosniev A, Alpichshev Z. 2025. Massive Dirac-Pauli physics in lead-halide perovskites. npj Quantum Materials. 10, 37.","chicago":"Shiva Kumar, Abhishek, Mikhail Maslov, Mikhail Lemeshko, Artem Volosniev, and Zhanybek Alpichshev. “Massive Dirac-Pauli Physics in Lead-Halide Perovskites.” <i>Npj Quantum Materials</i>. Springer Nature, 2025. <a href=\"https://doi.org/10.1038/s41535-025-00754-7\">https://doi.org/10.1038/s41535-025-00754-7</a>.","apa":"Shiva Kumar, A., Maslov, M., Lemeshko, M., Volosniev, A., &#38; Alpichshev, Z. (2025). Massive Dirac-Pauli physics in lead-halide perovskites. <i>Npj Quantum Materials</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41535-025-00754-7\">https://doi.org/10.1038/s41535-025-00754-7</a>"},"publication_identifier":{"eissn":["2397-4648"]},"type":"journal_article","doi":"10.1038/s41535-025-00754-7","abstract":[{"lang":"eng","text":"In standard quantum electrodynamics (QED), the so-called non-minimal (Pauli) coupling is suppressed for elementary particles and has no physical implications. Here, we show that the Pauli term naturally appears in a known family of Dirac materials—the lead-halide perovskites, suggesting a novel playground for the study of analog QED effects. We outline measurable manifestations of the Pauli term in the phenomena pertaining to (i) relativistic corrections to bound states (ii) the Klein paradox, and (iii) spin effects in scattering. In particular, we demonstrate that (a) the binding energy of an electron in the vicinity of a positively charged defect is noticeably decreased due to the polarizability of lead ions and the appearance of a Darwin-like term, (b) strong spin-orbit coupling due to the Pauli term affects the exciton states, and (c) scattering of an electron off an energy barrier with broken mirror symmetry produces spin polarization in the outgoing current. Our study adds to the understanding of quantum phenomena in lead-halide perovskites and paves the way for tabletop simulations of analog Dirac-Pauli equations."}],"oa_version":"Published Version","DOAJ_listed":"1","day":"04","isi":1,"date_published":"2025-04-04T00:00:00Z","file":[{"date_created":"2025-04-10T06:12:49Z","file_size":592092,"file_id":"19536","content_type":"application/pdf","creator":"dernst","checksum":"08b1a94b362bb65482887e50020810e5","relation":"main_file","access_level":"open_access","date_updated":"2025-04-10T06:12:49Z","success":1,"file_name":"2025_njpQuantumMaterials_Kumar.pdf"}]},{"citation":{"apa":"Glasgow, M., Kwan, M. A., Sah, A., &#38; Sawhney, M. (2025). A central limit theorem for the matching number of a sparse random graph. <i>Journal of the London Mathematical Society</i>. Wiley. <a href=\"https://doi.org/10.1112/jlms.70101\">https://doi.org/10.1112/jlms.70101</a>","chicago":"Glasgow, Margalit, Matthew Alan Kwan, Ashwin Sah, and Mehtaab Sawhney. “A Central Limit Theorem for the Matching Number of a Sparse Random Graph.” <i>Journal of the London Mathematical Society</i>. Wiley, 2025. <a href=\"https://doi.org/10.1112/jlms.70101\">https://doi.org/10.1112/jlms.70101</a>.","short":"M. Glasgow, M.A. Kwan, A. Sah, M. Sawhney, Journal of the London Mathematical Society 111 (2025).","ista":"Glasgow M, Kwan MA, Sah A, Sawhney M. 2025. A central limit theorem for the matching number of a sparse random graph. Journal of the London Mathematical Society. 111(4), e70101.","ama":"Glasgow M, Kwan MA, Sah A, Sawhney M. A central limit theorem for the matching number of a sparse random graph. <i>Journal of the London Mathematical Society</i>. 2025;111(4). doi:<a href=\"https://doi.org/10.1112/jlms.70101\">10.1112/jlms.70101</a>","mla":"Glasgow, Margalit, et al. “A Central Limit Theorem for the Matching Number of a Sparse Random Graph.” <i>Journal of the London Mathematical Society</i>, vol. 111, no. 4, e70101, Wiley, 2025, doi:<a href=\"https://doi.org/10.1112/jlms.70101\">10.1112/jlms.70101</a>.","ieee":"M. Glasgow, M. A. Kwan, A. Sah, and M. Sawhney, “A central limit theorem for the matching number of a sparse random graph,” <i>Journal of the London Mathematical Society</i>, vol. 111, no. 4. Wiley, 2025."},"publication_identifier":{"issn":["0024-6107"],"eissn":["1469-7750"]},"month":"04","type":"journal_article","doi":"10.1112/jlms.70101","abstract":[{"lang":"eng","text":"In 1981, Karp and Sipser proved a law of large numbers for the matching number of a sparse Erdős–Rényi random graph, in an influential paper pioneering the so-called differential equation method for analysis of random graph processes. Strengthening this classical result, and answering a question of Aronson, Frieze and Pittel, we prove a central limit theorem in the same setting: the fluctuations in the matching number of a sparse random graph are asymptotically Gaussian. Our new contribution is to prove this central limit theorem in the subcritical and critical regimes, according to a celebrated algorithmic phase transition first observed by Karp and Sipser. Indeed, in the supercritical regime, a central limit theorem has recently been proved in the PhD thesis of Kreačić, using a stochastic generalisation of the differential equation method (comparing the so-called Karp–Sipser process to a system of stochastic differential equations). Our proof builds on these methods, and introduces new techniques to handle certain degeneracies present in the subcritical and critical cases. Curiously, our new techniques lead to a non-constructive result: we are able to characterise the fluctuations of the matching number around its mean, despite these fluctuations being much smaller than the error terms in our best estimates of the mean. We also prove a central limit theorem for the rank of the adjacency matrix of a sparse random graph."}],"arxiv":1,"oa_version":"Published Version","day":"01","date_published":"2025-04-01T00:00:00Z","isi":1,"file":[{"file_size":392208,"date_created":"2025-04-15T13:18:43Z","file_id":"19564","content_type":"application/pdf","checksum":"69ce9feaf64e776b99f3afd1041b1b11","creator":"dernst","access_level":"open_access","relation":"main_file","date_updated":"2025-04-15T13:18:43Z","file_name":"2025_JourLondMathSoc_Glasgow.pdf","success":1}],"acknowledgement":"We would like to thank Christina Goldschmidt and Eleonora Kreačić for insightful discussions and clarifications about their work in the thesis [26]. Matthew Kwan was supported by ERC Starting Grant ‘RANDSTRUCT’ No. 101076777. Ashwin Sah and Mehtaab Sawhney were supported by NSF Graduate Research Fellowship Program DGE-2141064. Ashwin Sah was supported by the PD Soros Fellowship.\r\nOpen access funding provided by Institute of Science and Technology Austria/KEMÖ.","date_updated":"2025-09-30T11:35:55Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","short":"CC BY-NC (4.0)","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","image":"/images/cc_by_nc.png"},"ddc":["510"],"article_type":"original","external_id":{"isi":["001473087200024"],"arxiv":["2402.05851"]},"title":"A central limit theorem for the matching number of a sparse random graph","quality_controlled":"1","OA_place":"publisher","status":"public","author":[{"last_name":"Glasgow","full_name":"Glasgow, Margalit","first_name":"Margalit"},{"full_name":"Kwan, Matthew Alan","last_name":"Kwan","id":"5fca0887-a1db-11eb-95d1-ca9d5e0453b3","orcid":"0000-0002-4003-7567","first_name":"Matthew Alan"},{"first_name":"Ashwin","last_name":"Sah","full_name":"Sah, Ashwin"},{"first_name":"Mehtaab","last_name":"Sawhney","full_name":"Sawhney, Mehtaab"}],"project":[{"name":"Randomness and structure in combinatorics","grant_number":"101076777","_id":"bd95085b-d553-11ed-ba76-e55d3349be45"}],"department":[{"_id":"MaKw"}],"article_number":"e70101","publisher":"Wiley","_id":"19554","language":[{"iso":"eng"}],"scopus_import":"1","article_processing_charge":"Yes (via OA deal)","date_created":"2025-04-13T22:01:19Z","volume":111,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","year":"2025","file_date_updated":"2025-04-15T13:18:43Z","publication_status":"published","has_accepted_license":"1","OA_type":"hybrid","oa":1,"corr_author":"1","intvolume":"       111","issue":"4","publication":"Journal of the London Mathematical Society"},{"author":[{"id":"81dc668a-19fa-11f0-bf31-d56534059ef3","first_name":"Darja","full_name":"Rohden, Darja","last_name":"Rohden"},{"first_name":"Giorgia","last_name":"Toscano","full_name":"Toscano, Giorgia"},{"orcid":"0000-0002-9350-7606","first_name":"Paul","id":"7B541462-FAF6-11E9-A490-E8DFE5697425","full_name":"Schanda, Paul","last_name":"Schanda"},{"first_name":"Roman J.","last_name":"Lichtenecker","full_name":"Lichtenecker, Roman J."}],"project":[{"name":"AlloSpace. The emergence and mechanisms of allostery","grant_number":"I05812","_id":"eb9c82eb-77a9-11ec-83b8-aadd536561cf"}],"department":[{"_id":"PaSc"}],"article_number":"e202500408","publisher":"Wiley","_id":"19555","language":[{"iso":"eng"}],"scopus_import":"1","article_processing_charge":"Yes (in subscription journal)","date_created":"2025-04-13T22:01:19Z","volume":31,"user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","year":"2025","file_date_updated":"2025-08-05T12:59:24Z","PlanS_conform":"1","publication_status":"published","OA_type":"hybrid","has_accepted_license":"1","oa":1,"intvolume":"        31","corr_author":"1","issue":"24","publication":"Chemistry - A European Journal","citation":{"ieee":"D. Rohden, G. Toscano, P. Schanda, and R. J. Lichtenecker, “Synthesis of selectively 13C/2H/15N- labeled arginine to probe protein conformation and interaction by NMR spectroscopy,” <i>Chemistry - A European Journal</i>, vol. 31, no. 24. Wiley, 2025.","mla":"Rohden, Darja, et al. “Synthesis of Selectively 13C/2H/15N- Labeled Arginine to Probe Protein Conformation and Interaction by NMR Spectroscopy.” <i>Chemistry - A European Journal</i>, vol. 31, no. 24, e202500408, Wiley, 2025, doi:<a href=\"https://doi.org/10.1002/chem.202500408\">10.1002/chem.202500408</a>.","ista":"Rohden D, Toscano G, Schanda P, Lichtenecker RJ. 2025. Synthesis of selectively 13C/2H/15N- labeled arginine to probe protein conformation and interaction by NMR spectroscopy. Chemistry - A European Journal. 31(24), e202500408.","ama":"Rohden D, Toscano G, Schanda P, Lichtenecker RJ. Synthesis of selectively 13C/2H/15N- labeled arginine to probe protein conformation and interaction by NMR spectroscopy. <i>Chemistry - A European Journal</i>. 2025;31(24). doi:<a href=\"https://doi.org/10.1002/chem.202500408\">10.1002/chem.202500408</a>","short":"D. Rohden, G. Toscano, P. Schanda, R.J. Lichtenecker, Chemistry - A European Journal 31 (2025).","chicago":"Rohden, Darja, Giorgia Toscano, Paul Schanda, and Roman J. Lichtenecker. “Synthesis of Selectively 13C/2H/15N- Labeled Arginine to Probe Protein Conformation and Interaction by NMR Spectroscopy.” <i>Chemistry - A European Journal</i>. Wiley, 2025. <a href=\"https://doi.org/10.1002/chem.202500408\">https://doi.org/10.1002/chem.202500408</a>.","apa":"Rohden, D., Toscano, G., Schanda, P., &#38; Lichtenecker, R. J. (2025). Synthesis of selectively 13C/2H/15N- labeled arginine to probe protein conformation and interaction by NMR spectroscopy. <i>Chemistry - A European Journal</i>. Wiley. <a href=\"https://doi.org/10.1002/chem.202500408\">https://doi.org/10.1002/chem.202500408</a>"},"publication_identifier":{"issn":["0947-6539"],"eissn":["1521-3765"]},"month":"04","type":"journal_article","doi":"10.1002/chem.202500408","abstract":[{"lang":"eng","text":"The charged arginine side chain is unique in determining many innate properties of proteins, contributing to stability and interaction surfaces, and directing allosteric regulation and enzymatic catalysis. NMR experiments can be used to reveal these processes at the molecular level, but it often requires selective insertion of carbon-13, nitrogen-15, and deuterium at defined atomic positions. We introduce a method to endow arginine residues with defined isotope patterns, combining synthetic organic chemistry and cell-based protein overexpression. The resulting proteins feature NMR active spin systems with optimized relaxation pathways leading to simplified NMR spectra with a sensitive response to changes in the chemical environment of the nuclei observed."}],"acknowledged_ssus":[{"_id":"NMR"}],"oa_version":"Published Version","day":"25","pmid":1,"date_published":"2025-04-25T00:00:00Z","isi":1,"file":[{"file_id":"20136","content_type":"application/pdf","date_created":"2025-08-05T12:59:24Z","file_size":2840681,"date_updated":"2025-08-05T12:59:24Z","success":1,"file_name":"2025_ChemistryEur_Rohden.pdf","checksum":"e3788628644b5aac666cf079b05f8fa7","creator":"dernst","access_level":"open_access","relation":"main_file"}],"acknowledgement":"We thank Lea Marie Becker for assistance with python scripts used to analyze the labeling efficiency, and Undina Guillerm, Rajkumar Singh, and Anna Kapitonova for help with protein production. This work was supported by the Austrian Science Fund (FWF; project number I5812-B) through a French-Austrian bi-national research project. We thank the Scientific Service Units (SSU) of Institute of Science and Technology Austria (ISTA) through resources provided by the NMR Facility, as well as the NMR center and MS center of the University of Vienna.","date_updated":"2025-09-30T11:35:05Z","tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"ddc":["540"],"article_type":"original","external_id":{"isi":["001479486400019"],"pmid":["40080421"]},"title":"Synthesis of selectively 13C/2H/15N- labeled arginine to probe protein conformation and interaction by NMR spectroscopy","quality_controlled":"1","OA_place":"publisher","status":"public"},{"status":"public","OA_place":"publisher","title":"Mapping developmental dynamics of autism spectrum disorder mouse models at single-cell resolution","page":"124","ddc":["570"],"tmp":{"image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"date_updated":"2026-04-14T09:07:14Z","alternative_title":["ISTA Thesis"],"acknowledgement":"The work presented in this doctoral thesis was performed at the Institute of Science\r\nand Technology (ISTA) and financially supported by a European Research Council\r\n(ERC) Consolidator Grant (PR1028ERC02), by SFARI (PR1028SIM02) and by the\r\nAustrian Science Fund (FWF) to Gaia Novarino (PE1028W1232). I am very thankful\r\nto the Doctoral Program “Molecular Drug Targets” (MolTag) for offering me financial\r\nsupport to perform essential experiments during my PhD studies and to participate in\r\ninternational conferences and courses.","file":[{"date_updated":"2025-04-15T08:43:36Z","file_name":"Schwarz_Thesis_2025_FINAL.docx","creator":"lschwarz","checksum":"50290a8604edb0a720387f01e9d59fe4","relation":"source_file","access_level":"closed","file_id":"19561","content_type":"application/vnd.openxmlformats-officedocument.wordprocessingml.document","date_created":"2025-04-15T08:43:36Z","file_size":21783427},{"embargo":"2026-10-15","date_created":"2025-04-15T08:43:42Z","file_size":11432175,"content_type":"application/pdf","file_id":"19562","relation":"main_file","access_level":"closed","creator":"lschwarz","checksum":"ed028488180ac4901e018ef1c330cf01","file_name":"Schwarz_Thesis_2025_FINALpdfa.pdf","embargo_to":"open_access","date_updated":"2026-03-27T13:15:08Z"}],"degree_awarded":"PhD","date_published":"2025-04-14T00:00:00Z","day":"14","oa_version":"Published Version","acknowledged_ssus":[{"_id":"Bio"},{"_id":"PreCl"},{"_id":"ScienComp"}],"type":"dissertation","doi":"10.15479/AT-ISTA-19557","month":"04","publication_identifier":{"issn":["2663-337X"]},"citation":{"apa":"Schwarz, L. A. (2025). <i>Mapping developmental dynamics of autism spectrum disorder mouse models at single-cell resolution</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT-ISTA-19557\">https://doi.org/10.15479/AT-ISTA-19557</a>","chicago":"Schwarz, Lena A. “Mapping Developmental Dynamics of Autism Spectrum Disorder Mouse Models at Single-Cell Resolution.” Institute of Science and Technology Austria, 2025. <a href=\"https://doi.org/10.15479/AT-ISTA-19557\">https://doi.org/10.15479/AT-ISTA-19557</a>.","ista":"Schwarz LA. 2025. Mapping developmental dynamics of autism spectrum disorder mouse models at single-cell resolution. Institute of Science and Technology Austria.","ama":"Schwarz LA. Mapping developmental dynamics of autism spectrum disorder mouse models at single-cell resolution. 2025. doi:<a href=\"https://doi.org/10.15479/AT-ISTA-19557\">10.15479/AT-ISTA-19557</a>","short":"L.A. Schwarz, Mapping Developmental Dynamics of Autism Spectrum Disorder Mouse Models at Single-Cell Resolution, Institute of Science and Technology Austria, 2025.","mla":"Schwarz, Lena A. <i>Mapping Developmental Dynamics of Autism Spectrum Disorder Mouse Models at Single-Cell Resolution</i>. Institute of Science and Technology Austria, 2025, doi:<a href=\"https://doi.org/10.15479/AT-ISTA-19557\">10.15479/AT-ISTA-19557</a>.","ieee":"L. A. Schwarz, “Mapping developmental dynamics of autism spectrum disorder mouse models at single-cell resolution,” Institute of Science and Technology Austria, 2025."},"supervisor":[{"full_name":"Novarino, Gaia","last_name":"Novarino","id":"3E57A680-F248-11E8-B48F-1D18A9856A87","first_name":"Gaia","orcid":"0000-0002-7673-7178"}],"corr_author":"1","has_accepted_license":"1","publication_status":"published","file_date_updated":"2026-03-27T13:15:08Z","year":"2025","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","related_material":{"record":[{"id":"12802","status":"public","relation":"part_of_dissertation"},{"id":"9429","status":"public","relation":"part_of_dissertation"}]},"date_created":"2025-04-14T06:59:06Z","article_processing_charge":"No","language":[{"iso":"eng"}],"_id":"19557","publisher":"Institute of Science and Technology Austria","department":[{"_id":"GradSch"},{"_id":"GaNo"}],"project":[{"grant_number":"707964","_id":"9B91375C-BA93-11EA-9121-9846C619BF3A","name":"Critical windows and reversibility of ASD associated with mutations in chromatin remodelers"},{"name":"Toward an understanding of the brain interstitial system and the extracellular proteome in health and autism spectrum disorders","_id":"34ba8964-11ca-11ed-8bc3-e15864e7e9a6","grant_number":"101044865"},{"name":"Molecular Drug Targets","grant_number":"W1232","call_identifier":"FWF","_id":"2548AE96-B435-11E9-9278-68D0E5697425"}],"author":[{"id":"29A8453C-F248-11E8-B48F-1D18A9856A87","first_name":"Lena A","full_name":"Schwarz, Lena A","last_name":"Schwarz"}]}]