[{"volume":87,"article_processing_charge":"No","doi":"10.1103/PhysRevE.87.063012","date_published":"2013-06-18T00:00:00Z","language":[{"iso":"eng"}],"publication":"Physical Review E","issue":"6","status":"public","abstract":[{"text":"In pipe, channel, and boundary layer flows turbulence first occurs intermittently in space and time: at moderate Reynolds numbers domains of disordered turbulent motion are separated by quiescent laminar regions. Based on direct numerical simulations of pipe flow we argue here that the spatial intermittency has its origin in a nearest neighbor interaction between turbulent regions. We further show that in this regime turbulent flows are intrinsically intermittent with a well-defined equilibrium turbulent fraction but without ever assuming a steady pattern. This transition scenario is analogous to that found in simple models such as coupled map lattices. The scaling observed implies that laminar intermissions of the turbulent flow will persist to arbitrarily large Reynolds numbers.","lang":"eng"}],"oa_version":"Preprint","type":"journal_article","publisher":"American Physical Society","author":[{"last_name":"Avila","full_name":"Avila, Marc","first_name":"Marc"},{"full_name":"Hof, Björn","last_name":"Hof","id":"3A374330-F248-11E8-B48F-1D18A9856A87","first_name":"Björn","orcid":"0000-0003-2057-2754"}],"day":"18","project":[{"_id":"25152F3A-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"306589","name":"Decoding the complexity of turbulence at its origin"}],"isi":1,"date_updated":"2026-08-12T14:29:19Z","intvolume":"        87","year":"2013","external_id":{"isi":["000320645700009"],"arxiv":["1306.5890"]},"arxiv":1,"scopus_import":"1","oa":1,"publication_status":"published","month":"06","department":[{"_id":"BjHo"}],"quality_controlled":"1","title":"Nature of laminar-turbulence intermittency in shear flows","date_created":"2018-12-11T11:59:43Z","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1306.5890"}],"citation":{"mla":"Avila, Marc, and Björn Hof. “Nature of Laminar-Turbulence Intermittency in Shear Flows.” <i>Physical Review E</i>, vol. 87, no. 6, 063012, American Physical Society, 2013, doi:<a href=\"https://doi.org/10.1103/PhysRevE.87.063012\">10.1103/PhysRevE.87.063012</a>.","ieee":"M. Avila and B. Hof, “Nature of laminar-turbulence intermittency in shear flows,” <i>Physical Review E</i>, vol. 87, no. 6. American Physical Society, 2013.","chicago":"Avila, Marc, and Björn Hof. “Nature of Laminar-Turbulence Intermittency in Shear Flows.” <i>Physical Review E</i>. American Physical Society, 2013. <a href=\"https://doi.org/10.1103/PhysRevE.87.063012\">https://doi.org/10.1103/PhysRevE.87.063012</a>.","ama":"Avila M, Hof B. Nature of laminar-turbulence intermittency in shear flows. <i>Physical Review E</i>. 2013;87(6). doi:<a href=\"https://doi.org/10.1103/PhysRevE.87.063012\">10.1103/PhysRevE.87.063012</a>","apa":"Avila, M., &#38; Hof, B. (2013). Nature of laminar-turbulence intermittency in shear flows. <i>Physical Review E</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevE.87.063012\">https://doi.org/10.1103/PhysRevE.87.063012</a>","short":"M. Avila, B. Hof, Physical Review E 87 (2013).","ista":"Avila M, Hof B. 2013. Nature of laminar-turbulence intermittency in shear flows. Physical Review E. 87(6), 063012."},"article_number":"063012","ec_funded":1,"publist_id":"4074","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"2811"},{"citation":{"ama":"zur Nedden S, Doney AS, Frenguelli BG. The double-edged sword: Gaining Adenosine at the expense of ATP. How to balance the books. In: Masino S, Boison D, eds. <i>Adenosine</i>. 1st ed. New York: Springer; 2012:109-129. doi:<a href=\"https://doi.org/10.1007/978-1-4614-3903-5_6\">10.1007/978-1-4614-3903-5_6</a>","apa":"zur Nedden, S., Doney, A. S., &#38; Frenguelli, B. G. (2012). The double-edged sword: Gaining Adenosine at the expense of ATP. How to balance the books. In S. Masino &#38; D. Boison (Eds.), <i>Adenosine</i> (1st ed., pp. 109–129). New York: Springer. <a href=\"https://doi.org/10.1007/978-1-4614-3903-5_6\">https://doi.org/10.1007/978-1-4614-3903-5_6</a>","short":"S. zur Nedden, A.S. Doney, B.G. Frenguelli, in:, S. Masino, D. Boison (Eds.), Adenosine, 1st ed., Springer, New York, 2012, pp. 109–129.","ista":"zur Nedden S, Doney AS, Frenguelli BG. 2012.The double-edged sword: Gaining Adenosine at the expense of ATP. How to balance the books. In: Adenosine. , 109–129.","mla":"zur Nedden, Stephanie, et al. “The Double-Edged Sword: Gaining Adenosine at the Expense of ATP. How to Balance the Books.” <i>Adenosine</i>, edited by Susan Masino and Detlev Boison, 1st ed., Springer, 2012, pp. 109–29, doi:<a href=\"https://doi.org/10.1007/978-1-4614-3903-5_6\">10.1007/978-1-4614-3903-5_6</a>.","ieee":"S. zur Nedden, A. S. Doney, and B. G. Frenguelli, “The double-edged sword: Gaining Adenosine at the expense of ATP. How to balance the books,” in <i>Adenosine</i>, 1st ed., S. Masino and D. Boison, Eds. New York: Springer, 2012, pp. 109–129.","chicago":"Nedden, Stephanie zur, Alexander S. Doney, and Bruno G. Frenguelli. “The Double-Edged Sword: Gaining Adenosine at the Expense of ATP. How to Balance the Books.” In <i>Adenosine</i>, edited by Susan Masino and Detlev Boison, 1st ed., 109–29. New York: Springer, 2012. <a href=\"https://doi.org/10.1007/978-1-4614-3903-5_6\">https://doi.org/10.1007/978-1-4614-3903-5_6</a>."},"author":[{"full_name":"zur Nedden, Stephanie","last_name":"zur Nedden","id":"3C77F464-F248-11E8-B48F-1D18A9856A87","first_name":"Stephanie"},{"first_name":"Alexander S.","last_name":"Doney","full_name":"Doney, Alexander S."},{"first_name":"Bruno G.","full_name":"Frenguelli, Bruno G.","last_name":"Frenguelli"}],"publisher":"Springer","editor":[{"full_name":"Masino, Susan","last_name":"Masino","first_name":"Susan"},{"full_name":"Boison, Detlev","last_name":"Boison","first_name":"Detlev"}],"title":"The double-edged sword: Gaining Adenosine at the expense of ATP. How to balance the books","quality_controlled":"1","department":[{"_id":"HaJa"}],"type":"book_chapter","date_created":"2022-03-21T07:16:12Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","place":"New York","_id":"10896","date_updated":"2022-06-21T11:51:58Z","edition":"1","day":"23","publication_identifier":{"isbn":["9781461439028"],"eisbn":["9781461439035"]},"date_published":"2012-07-23T00:00:00Z","language":[{"iso":"eng"}],"year":"2012","page":"109-129","article_processing_charge":"No","doi":"10.1007/978-1-4614-3903-5_6","oa_version":"None","month":"07","publication":"Adenosine","scopus_import":"1","abstract":[{"lang":"eng","text":"Under physiological conditions the brain, via the purine salvage pathway, reuses the preformed purine bases hypoxanthine, derived from ATP degradation, and adenine (Ade), derived from polyamine synthesis, to restore its ATP pool. However, the massive degradation of ATP during ischemia, although providing valuable neuroprotective adenosine, results in the accumulation and loss of diffusible purine metabolites and thereby leads to a protracted reduction in the post-ischemic ATP pool size. In vivo, this may both limit the ability to deploy ATP-dependent reparative mechanisms and reduce the subsequent availability of adenosine, whilst in brain slices results in tissue with substantially lower levels of ATP than in vivo. In the present review, we describe the mechanisms by which brain tissue replenishes its ATP, how this can be improved with the clinically tolerated chemicals D-ribose and adenine, and the functional, and potential therapeutic, implications of doing so."}],"acknowledgement":"We are grateful to Research into Ageing/Ageing UK and The Dunhill Trust for funding SzN’s graduate studies, and to Prof Nicholas Dale for his valuable input.","status":"public","publication_status":"published"},{"month":"10","alternative_title":["LNCS"],"scopus_import":"1","publication_status":"published","acknowledgement":"This work has been partially supported by the French ANR project Veridyc","year":"2012","intvolume":"      7561","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","_id":"10903","publication_identifier":{"isbn":["9783642333859"],"eissn":["1611-3349"],"eisbn":["9783642333866"],"issn":["0302-9743"]},"citation":{"ama":"Bouajjani A, Dragoi C, Enea C, Sighireanu M. Accurate invariant checking for programs manipulating lists and arrays with infinite data. In: <i>Automated Technology for Verification and Analysis</i>. Vol 7561. LNCS. Berlin, Heidelberg: Springer; 2012:167-182. doi:<a href=\"https://doi.org/10.1007/978-3-642-33386-6_14\">10.1007/978-3-642-33386-6_14</a>","apa":"Bouajjani, A., Dragoi, C., Enea, C., &#38; Sighireanu, M. (2012). Accurate invariant checking for programs manipulating lists and arrays with infinite data. In <i>Automated Technology for Verification and Analysis</i> (Vol. 7561, pp. 167–182). Berlin, Heidelberg: Springer. <a href=\"https://doi.org/10.1007/978-3-642-33386-6_14\">https://doi.org/10.1007/978-3-642-33386-6_14</a>","short":"A. Bouajjani, C. Dragoi, C. Enea, M. Sighireanu, in:, Automated Technology for Verification and Analysis, Springer, Berlin, Heidelberg, 2012, pp. 167–182.","ista":"Bouajjani A, Dragoi C, Enea C, Sighireanu M. 2012. Accurate invariant checking for programs manipulating lists and arrays with infinite data. Automated Technology for Verification and Analysis. ATVA: Automated Technology for Verification and AnalysisLNCS, LNCS, vol. 7561, 167–182.","mla":"Bouajjani, Ahmed, et al. “Accurate Invariant Checking for Programs Manipulating Lists and Arrays with Infinite Data.” <i>Automated Technology for Verification and Analysis</i>, vol. 7561, Springer, 2012, pp. 167–82, doi:<a href=\"https://doi.org/10.1007/978-3-642-33386-6_14\">10.1007/978-3-642-33386-6_14</a>.","ieee":"A. Bouajjani, C. Dragoi, C. Enea, and M. Sighireanu, “Accurate invariant checking for programs manipulating lists and arrays with infinite data,” in <i>Automated Technology for Verification and Analysis</i>, Thiruvananthapuram, India, 2012, vol. 7561, pp. 167–182.","chicago":"Bouajjani, Ahmed, Cezara Dragoi, Constantin Enea, and Mihaela Sighireanu. “Accurate Invariant Checking for Programs Manipulating Lists and Arrays with Infinite Data.” In <i>Automated Technology for Verification and Analysis</i>, 7561:167–82. LNCS. Berlin, Heidelberg: Springer, 2012. <a href=\"https://doi.org/10.1007/978-3-642-33386-6_14\">https://doi.org/10.1007/978-3-642-33386-6_14</a>."},"title":"Accurate invariant checking for programs manipulating lists and arrays with infinite data","department":[{"_id":"ToHe"}],"quality_controlled":"1","date_created":"2022-03-21T07:58:39Z","oa_version":"None","conference":{"start_date":"2012-10-03","location":"Thiruvananthapuram, India","name":"ATVA: Automated Technology for Verification and Analysis","end_date":"2012-10-06"},"publication":"Automated Technology for Verification and Analysis","corr_author":"1","abstract":[{"lang":"eng","text":"We propose a logic-based framework for automated reasoning about sequential programs manipulating singly-linked lists and arrays with unbounded data. We introduce the logic SLAD, which allows combining shape constraints, written in a fragment of Separation Logic, with data and size constraints. We address the problem of checking the entailment between SLAD formulas, which is crucial in performing pre-post condition reasoning. Although this problem is undecidable in general for SLAD, we propose a sound and powerful procedure that is able to solve this problem for a large class of formulas, beyond the capabilities of existing techniques and tools. We prove that this procedure is complete, i.e., it is actually a decision procedure for this problem, for an important fragment of SLAD including known decidable logics. We implemented this procedure and shown its preciseness and its efficiency on a significant benchmark of formulas."}],"series_title":"LNCS","status":"public","date_published":"2012-10-15T00:00:00Z","language":[{"iso":"eng"}],"volume":7561,"page":"167-182","article_processing_charge":"No","doi":"10.1007/978-3-642-33386-6_14","place":"Berlin, Heidelberg","date_updated":"2024-10-09T21:02:34Z","day":"15","publisher":"Springer","author":[{"first_name":"Ahmed","full_name":"Bouajjani, Ahmed","last_name":"Bouajjani"},{"id":"2B2B5ED0-F248-11E8-B48F-1D18A9856A87","first_name":"Cezara","last_name":"Dragoi","full_name":"Dragoi, Cezara"},{"full_name":"Enea, Constantin","last_name":"Enea","first_name":"Constantin"},{"last_name":"Sighireanu","full_name":"Sighireanu, Mihaela","first_name":"Mihaela"}],"type":"conference"},{"_id":"11092","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"eissn":["1095-9203"],"issn":["0036-8075"]},"pmid":1,"citation":{"apa":"Savas, J. N., Toyama, B. H., Xu, T., Yates, J. R., &#38; Hetzer, M. (2012). Extremely long-lived nuclear pore proteins in the rat brain. <i>Science</i>. American Association for the Advancement of Science. <a href=\"https://doi.org/10.1126/science.1217421\">https://doi.org/10.1126/science.1217421</a>","ama":"Savas JN, Toyama BH, Xu T, Yates JR, Hetzer M. Extremely long-lived nuclear pore proteins in the rat brain. <i>Science</i>. 2012;335(6071):942-942. doi:<a href=\"https://doi.org/10.1126/science.1217421\">10.1126/science.1217421</a>","ista":"Savas JN, Toyama BH, Xu T, Yates JR, Hetzer M. 2012. Extremely long-lived nuclear pore proteins in the rat brain. Science. 335(6071), 942–942.","short":"J.N. Savas, B.H. Toyama, T. Xu, J.R. Yates, M. Hetzer, Science 335 (2012) 942–942.","mla":"Savas, Jeffrey N., et al. “Extremely Long-Lived Nuclear Pore Proteins in the Rat Brain.” <i>Science</i>, vol. 335, no. 6071, American Association for the Advancement of Science, 2012, pp. 942–942, doi:<a href=\"https://doi.org/10.1126/science.1217421\">10.1126/science.1217421</a>.","chicago":"Savas, Jeffrey N., Brandon H. Toyama, Tao Xu, John R. Yates, and Martin Hetzer. “Extremely Long-Lived Nuclear Pore Proteins in the Rat Brain.” <i>Science</i>. American Association for the Advancement of Science, 2012. <a href=\"https://doi.org/10.1126/science.1217421\">https://doi.org/10.1126/science.1217421</a>.","ieee":"J. N. Savas, B. H. Toyama, T. Xu, J. R. Yates, and M. Hetzer, “Extremely long-lived nuclear pore proteins in the rat brain,” <i>Science</i>, vol. 335, no. 6071. American Association for the Advancement of Science, pp. 942–942, 2012."},"date_created":"2022-04-07T07:52:01Z","extern":"1","title":"Extremely long-lived nuclear pore proteins in the rat brain","quality_controlled":"1","department":[{"_id":"MaHe"}],"month":"02","publication_status":"published","article_type":"letter_note","scopus_import":"1","external_id":{"pmid":["22300851"]},"year":"2012","intvolume":"       335","date_updated":"2025-12-15T10:03:06Z","day":"02","author":[{"full_name":"Savas, Jeffrey N.","last_name":"Savas","first_name":"Jeffrey N."},{"first_name":"Brandon H.","last_name":"Toyama","full_name":"Toyama, Brandon H."},{"first_name":"Tao","full_name":"Xu, Tao","last_name":"Xu"},{"full_name":"Yates, John R.","last_name":"Yates","first_name":"John R."},{"first_name":"Martin W","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","orcid":"0000-0002-2111-992X","last_name":"HETZER","full_name":"HETZER, Martin W"}],"publisher":"American Association for the Advancement of Science","type":"journal_article","oa_version":"None","abstract":[{"text":"To combat the functional decline of the proteome, cells use the process of protein turnover to replace potentially impaired polypeptides with new functional copies. We found that extremely long-lived proteins (ELLPs) did not turn over in postmitotic cells of the rat central nervous system. These ELLPs were associated with chromatin and the nuclear pore complex, the central transport channels that mediate all molecular trafficking in and out of the nucleus. The longevity of these proteins would be expected to expose them to potentially harmful metabolites, putting them at risk of accumulating damage over extended periods of time. Thus, it is possible that failure to maintain proper levels and functional integrity of ELLPs in nonproliferative cells might contribute to age-related deterioration in cell and tissue function.","lang":"eng"}],"status":"public","issue":"6071","publication":"Science","language":[{"iso":"eng"}],"date_published":"2012-02-02T00:00:00Z","page":"942-942","doi":"10.1126/science.1217421","article_processing_charge":"No","volume":335},{"language":[{"iso":"eng"}],"date_published":"2012-07-03T00:00:00Z","article_processing_charge":"No","doi":"10.1109/TCBB.2012.91","page":"310 - 322","volume":10,"oa_version":"None","status":"public","abstract":[{"lang":"eng","text":"We introduce propagation models (PMs), a formalism able to express several kinds of equations that describe the behavior of biochemical reaction networks. Furthermore, we introduce the propagation abstract data type (PADT), which separates concerns regarding different numerical algorithms for the transient analysis of biochemical reaction networks from concerns regarding their implementation, thus allowing for portable and efficient solutions. The state of a propagation abstract data type is given by a vector that assigns mass values to a set of nodes, and its (next) operator propagates mass values through this set of nodes. We propose an approximate implementation of the (next) operator, based on threshold abstraction, which propagates only &quot;significant&quot; mass values and thus achieves a compromise between efficiency and accuracy. Finally, we give three use cases for propagation models: the chemical master equation (CME), the reaction rate equation (RRE), and a hybrid method that combines these two equations. These three applications use propagation models in order to propagate probabilities and/or expected values and variances of the model's variables."}],"corr_author":"1","publication":"IEEE ACM Transactions on Computational Biology and Bioinformatics","issue":"2","author":[{"orcid":"0000−0002−2985−7724","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas A","last_name":"Henzinger","full_name":"Henzinger, Thomas A"},{"full_name":"Mateescu, Maria","last_name":"Mateescu","first_name":"Maria","id":"3B43276C-F248-11E8-B48F-1D18A9856A87"}],"publisher":"IEEE","type":"journal_article","date_updated":"2025-09-29T14:17:43Z","project":[{"call_identifier":"FP7","_id":"25EE3708-B435-11E9-9278-68D0E5697425","name":"Quantitative Reactive Modeling","grant_number":"267989"}],"isi":1,"day":"03","year":"2012","external_id":{"pmid":["22778152"],"isi":["000323504100006"]},"intvolume":"        10","month":"07","publication_status":"published","scopus_import":"1","citation":{"chicago":"Henzinger, Thomas A, and Maria Mateescu. “The Propagation Approach for Computing Biochemical Reaction Networks.” <i>IEEE ACM Transactions on Computational Biology and Bioinformatics</i>. IEEE, 2012. <a href=\"https://doi.org/10.1109/TCBB.2012.91\">https://doi.org/10.1109/TCBB.2012.91</a>.","ieee":"T. A. Henzinger and M. Mateescu, “The propagation approach for computing biochemical reaction networks,” <i>IEEE ACM Transactions on Computational Biology and Bioinformatics</i>, vol. 10, no. 2. IEEE, pp. 310–322, 2012.","mla":"Henzinger, Thomas A., and Maria Mateescu. “The Propagation Approach for Computing Biochemical Reaction Networks.” <i>IEEE ACM Transactions on Computational Biology and Bioinformatics</i>, vol. 10, no. 2, IEEE, 2012, pp. 310–22, doi:<a href=\"https://doi.org/10.1109/TCBB.2012.91\">10.1109/TCBB.2012.91</a>.","ista":"Henzinger TA, Mateescu M. 2012. The propagation approach for computing biochemical reaction networks. IEEE ACM Transactions on Computational Biology and Bioinformatics. 10(2), 310–322.","short":"T.A. Henzinger, M. Mateescu, IEEE ACM Transactions on Computational Biology and Bioinformatics 10 (2012) 310–322.","ama":"Henzinger TA, Mateescu M. The propagation approach for computing biochemical reaction networks. <i>IEEE ACM Transactions on Computational Biology and Bioinformatics</i>. 2012;10(2):310-322. doi:<a href=\"https://doi.org/10.1109/TCBB.2012.91\">10.1109/TCBB.2012.91</a>","apa":"Henzinger, T. A., &#38; Mateescu, M. (2012). The propagation approach for computing biochemical reaction networks. <i>IEEE ACM Transactions on Computational Biology and Bioinformatics</i>. IEEE. <a href=\"https://doi.org/10.1109/TCBB.2012.91\">https://doi.org/10.1109/TCBB.2012.91</a>"},"pmid":1,"date_created":"2018-12-11T11:56:52Z","department":[{"_id":"ToHe"},{"_id":"CaGu"}],"quality_controlled":"1","title":"The propagation approach for computing biochemical reaction networks","_id":"2302","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","ec_funded":1,"publist_id":"4625"},{"date_updated":"2025-09-30T08:21:34Z","day":"01","isi":1,"publisher":"Oxford University Press","author":[{"full_name":"Ebersberger, Ingo","last_name":"Ebersberger","first_name":"Ingo"},{"last_name":"De Matos Simoes","full_name":"De Matos Simoes, Ricardo","first_name":"Ricardo"},{"id":"2BB22BC2-F248-11E8-B48F-1D18A9856A87","first_name":"Anne","last_name":"Kupczok","full_name":"Kupczok, Anne"},{"full_name":"Gube, Matthias","last_name":"Gube","first_name":"Matthias"},{"last_name":"Kothe","full_name":"Kothe, Erika","first_name":"Erika"},{"full_name":"Voigt, Kerstin","last_name":"Voigt","first_name":"Kerstin"},{"full_name":"Von Haeseler, Arndt","last_name":"Von Haeseler","first_name":"Arndt"}],"type":"journal_article","oa_version":"Published Version","publication":"Molecular Biology and Evolution","file":[{"date_created":"2018-12-12T10:13:30Z","checksum":"d565dcac27d1736c0c378ea6fcf22d69","relation":"main_file","access_level":"open_access","date_updated":"2020-07-14T12:45:40Z","file_name":"IST-2015-384-v1+1_Mol_Biol_Evol-2012-Ebersberger-1319-34.pdf","file_id":"5013","file_size":754922,"creator":"system","content_type":"application/pdf"}],"issue":"5","status":"public","abstract":[{"text":"The kingdom of fungi provides model organisms for biotechnology, cell biology, genetics, and life sciences in general. Only when their phylogenetic relationships are stably resolved, can individual results from fungal research be integrated into a holistic picture of biology. However, and despite recent progress, many deep relationships within the fungi remain unclear. Here, we present the first phylogenomic study of an entire eukaryotic kingdom that uses a consistency criterion to strengthen phylogenetic conclusions. We reason that branches (splits) recovered with independent data and different tree reconstruction methods are likely to reflect true evolutionary relationships. Two complementary phylogenomic data sets based on 99 fungal genomes and 109 fungal expressed sequence tag (EST) sets analyzed with four different tree reconstruction methods shed light from different angles on the fungal tree of life. Eleven additional data sets address specifically the phylogenetic position of Blastocladiomycota, Ustilaginomycotina, and Dothideomycetes, respectively. The combined evidence from the resulting trees supports the deep-level stability of the fungal groups toward a comprehensive natural system of the fungi. In addition, our analysis reveals methodologically interesting aspects. Enrichment for EST encoded data-a common practice in phylogenomic analyses-introduces a strong bias toward slowly evolving and functionally correlated genes. Consequently, the generalization of phylogenomic data sets as collections of randomly selected genes cannot be taken for granted. A thorough characterization of the data to assess possible influences on the tree reconstruction should therefore become a standard in phylogenomic analyses.","lang":"eng"}],"pubrep_id":"384","file_date_updated":"2020-07-14T12:45:40Z","language":[{"iso":"eng"}],"date_published":"2012-05-01T00:00:00Z","volume":29,"doi":"10.1093/molbev/msr285","article_processing_charge":"No","page":"1319 - 1334","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","_id":"2411","publist_id":"4515","has_accepted_license":"1","citation":{"mla":"Ebersberger, Ingo, et al. “A Consistent Phylogenetic Backbone for the Fungi.” <i>Molecular Biology and Evolution</i>, vol. 29, no. 5, Oxford University Press, 2012, pp. 1319–34, doi:<a href=\"https://doi.org/10.1093/molbev/msr285\">10.1093/molbev/msr285</a>.","ieee":"I. Ebersberger <i>et al.</i>, “A consistent phylogenetic backbone for the fungi,” <i>Molecular Biology and Evolution</i>, vol. 29, no. 5. Oxford University Press, pp. 1319–1334, 2012.","chicago":"Ebersberger, Ingo, Ricardo De Matos Simoes, Anne Kupczok, Matthias Gube, Erika Kothe, Kerstin Voigt, and Arndt Von Haeseler. “A Consistent Phylogenetic Backbone for the Fungi.” <i>Molecular Biology and Evolution</i>. Oxford University Press, 2012. <a href=\"https://doi.org/10.1093/molbev/msr285\">https://doi.org/10.1093/molbev/msr285</a>.","apa":"Ebersberger, I., De Matos Simoes, R., Kupczok, A., Gube, M., Kothe, E., Voigt, K., &#38; Von Haeseler, A. (2012). A consistent phylogenetic backbone for the fungi. <i>Molecular Biology and Evolution</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/molbev/msr285\">https://doi.org/10.1093/molbev/msr285</a>","ama":"Ebersberger I, De Matos Simoes R, Kupczok A, et al. A consistent phylogenetic backbone for the fungi. <i>Molecular Biology and Evolution</i>. 2012;29(5):1319-1334. doi:<a href=\"https://doi.org/10.1093/molbev/msr285\">10.1093/molbev/msr285</a>","short":"I. Ebersberger, R. De Matos Simoes, A. Kupczok, M. Gube, E. Kothe, K. Voigt, A. Von Haeseler, Molecular Biology and Evolution 29 (2012) 1319–1334.","ista":"Ebersberger I, De Matos Simoes R, Kupczok A, Gube M, Kothe E, Voigt K, Von Haeseler A. 2012. A consistent phylogenetic backbone for the fungi. Molecular Biology and Evolution. 29(5), 1319–1334."},"tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","short":"CC BY-NC (4.0)","image":"/images/cc_by_nc.png"},"quality_controlled":"1","department":[{"_id":"JoBo"}],"title":"A consistent phylogenetic backbone for the fungi","date_created":"2018-12-11T11:57:30Z","month":"05","oa":1,"scopus_import":"1","license":"https://creativecommons.org/licenses/by-nc/4.0/","publication_status":"published","ddc":["570","576"],"year":"2012","external_id":{"isi":["000303603300004"]},"intvolume":"        29"},{"ec_funded":1,"publist_id":"4180","_id":"2715","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","date_created":"2018-12-11T11:59:13Z","title":"Average case analysis of the classical algorithm for Markov decision processes with Büchi objectives","quality_controlled":"1","department":[{"_id":"KrCh"}],"tmp":{"image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)"},"citation":{"ieee":"K. Chatterjee, M. Joglekar, and N. Shah, “Average case analysis of the classical algorithm for Markov decision processes with Büchi objectives,” presented at the FSTTCS: Foundations of Software Technology and Theoretical Computer Science, Hyderabad, India, 2012, vol. 18, pp. 461–473.","chicago":"Chatterjee, Krishnendu, Manas Joglekar, and Nisarg Shah. “Average Case Analysis of the Classical Algorithm for Markov Decision Processes with Büchi Objectives,” 18:461–73. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012. <a href=\"https://doi.org/10.4230/LIPIcs.FSTTCS.2012.461\">https://doi.org/10.4230/LIPIcs.FSTTCS.2012.461</a>.","mla":"Chatterjee, Krishnendu, et al. <i>Average Case Analysis of the Classical Algorithm for Markov Decision Processes with Büchi Objectives</i>. Vol. 18, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012, pp. 461–73, doi:<a href=\"https://doi.org/10.4230/LIPIcs.FSTTCS.2012.461\">10.4230/LIPIcs.FSTTCS.2012.461</a>.","short":"K. Chatterjee, M. Joglekar, N. Shah, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2012, pp. 461–473.","ista":"Chatterjee K, Joglekar M, Shah N. 2012. Average case analysis of the classical algorithm for Markov decision processes with Büchi objectives. FSTTCS: Foundations of Software Technology and Theoretical Computer Science, LIPIcs, vol. 18, 461–473.","apa":"Chatterjee, K., Joglekar, M., &#38; Shah, N. (2012). Average case analysis of the classical algorithm for Markov decision processes with Büchi objectives (Vol. 18, pp. 461–473). Presented at the FSTTCS: Foundations of Software Technology and Theoretical Computer Science, Hyderabad, India: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href=\"https://doi.org/10.4230/LIPIcs.FSTTCS.2012.461\">https://doi.org/10.4230/LIPIcs.FSTTCS.2012.461</a>","ama":"Chatterjee K, Joglekar M, Shah N. Average case analysis of the classical algorithm for Markov decision processes with Büchi objectives. In: Vol 18. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2012:461-473. doi:<a href=\"https://doi.org/10.4230/LIPIcs.FSTTCS.2012.461\">10.4230/LIPIcs.FSTTCS.2012.461</a>"},"has_accepted_license":"1","publication_status":"published","ddc":["000"],"alternative_title":["LIPIcs"],"license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","scopus_import":1,"oa":1,"month":"12","intvolume":"        18","related_material":{"record":[{"id":"1598","status":"public","relation":"later_version"}]},"year":"2012","project":[{"_id":"2584A770-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","grant_number":"P 23499-N23","name":"Modern Graph Algorithmic Techniques in Formal Verification"},{"grant_number":"S11407","name":"Game Theory","_id":"25863FF4-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"},{"grant_number":"279307","name":"Quantitative Graph Games: Theory and Applications","_id":"2581B60A-B435-11E9-9278-68D0E5697425","call_identifier":"FP7"},{"name":"Microsoft Research Faculty Fellowship","_id":"2587B514-B435-11E9-9278-68D0E5697425"}],"day":"10","date_updated":"2025-09-23T08:00:31Z","type":"conference","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","author":[{"orcid":"0000-0002-4561-241X","first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","full_name":"Chatterjee, Krishnendu","last_name":"Chatterjee"},{"first_name":"Manas","last_name":"Joglekar","full_name":"Joglekar, Manas"},{"first_name":"Nisarg","full_name":"Shah, Nisarg","last_name":"Shah"}],"abstract":[{"lang":"eng","text":"We consider Markov decision processes (MDPs) with specifications given as Büchi (liveness) objectives. We consider the problem of computing the set of almost-sure winning vertices from where the objective can be ensured with probability 1. We study for the first time the average case complexity of the classical algorithm for computing the set of almost-sure winning vertices for MDPs with Büchi objectives. Our contributions are as follows: First, we show that for MDPs with constant out-degree the expected number of iterations is at most logarithmic and the average case running time is linear (as compared to the worst case linear number of iterations and quadratic time complexity). Second, for the average case analysis over all MDPs we show that the expected number of iterations is constant and the average case running time is linear (again as compared to the worst case linear number of iterations and quadratic time complexity). Finally we also show that given that all MDPs are equally likely, the probability that the classical algorithm requires more than constant number of iterations is exponentially small."}],"status":"public","file":[{"creator":"system","file_size":519040,"access_level":"open_access","file_id":"5040","date_updated":"2020-07-14T12:45:45Z","file_name":"IST-2016-525-v1+1_42_1_.pdf","content_type":"application/pdf","date_created":"2018-12-12T10:13:53Z","checksum":"d4d644ed1a885dbfc4fa1ef4c5724dab","relation":"main_file"}],"conference":{"end_date":"2012-12-17","name":"FSTTCS: Foundations of Software Technology and Theoretical Computer Science","location":"Hyderabad, India","start_date":"2012-12-15"},"oa_version":"Published Version","page":"461 - 473","doi":"10.4230/LIPIcs.FSTTCS.2012.461","volume":18,"language":[{"iso":"eng"}],"date_published":"2012-12-10T00:00:00Z","file_date_updated":"2020-07-14T12:45:45Z","pubrep_id":"525"},{"publist_id":"3975","day":"01","date_updated":"2025-06-03T11:46:36Z","_id":"2825","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"conference","date_created":"2018-12-11T11:59:48Z","title":"Dynamic pruning of factor graphs for maximum marginal prediction","department":[{"_id":"ChLa"}],"quality_controlled":"1","citation":{"chicago":"Lampert, Christoph. “Dynamic Pruning of Factor Graphs for Maximum Marginal Prediction,” 1:82–90. Neural Information Processing Systems Foundation, 2012.","ieee":"C. Lampert, “Dynamic pruning of factor graphs for maximum marginal prediction,” presented at the NIPS: Neural Information Processing Systems, Lake Tahoe, NV, United States, 2012, vol. 1, pp. 82–90.","mla":"Lampert, Christoph. <i>Dynamic Pruning of Factor Graphs for Maximum Marginal Prediction</i>. Vol. 1, Neural Information Processing Systems Foundation, 2012, pp. 82–90.","ista":"Lampert C. 2012. Dynamic pruning of factor graphs for maximum marginal prediction. NIPS: Neural Information Processing Systems vol. 1, 82–90.","short":"C. Lampert, in:, Neural Information Processing Systems Foundation, 2012, pp. 82–90.","ama":"Lampert C. Dynamic pruning of factor graphs for maximum marginal prediction. In: Vol 1. Neural Information Processing Systems Foundation; 2012:82-90.","apa":"Lampert, C. (2012). Dynamic pruning of factor graphs for maximum marginal prediction (Vol. 1, pp. 82–90). Presented at the NIPS: Neural Information Processing Systems, Lake Tahoe, NV, United States: Neural Information Processing Systems Foundation."},"author":[{"last_name":"Lampert","full_name":"Lampert, Christoph","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","first_name":"Christoph","orcid":"0000-0001-8622-7887"}],"publisher":"Neural Information Processing Systems Foundation","abstract":[{"lang":"eng","text":"We study the problem of maximum marginal prediction (MMP) in probabilistic graphical models, a task that occurs, for example, as the Bayes optimal decision rule under a Hamming loss. MMP is typically performed as a two-stage procedure: one estimates each variable's marginal probability and then forms a prediction from the states of maximal probability. In this work we propose a simple yet effective technique for accelerating MMP when inference is sampling-based: instead of the above two-stage procedure we directly estimate the posterior probability of each decision variable. This allows us to identify the point of time when we are sufficiently certain about any individual decision. Whenever this is the case, we dynamically prune the variables we are confident about from the underlying factor graph. Consequently, at any time only samples of variables whose decision is still uncertain need to be created. Experiments in two prototypical scenarios, multi-label classification and image inpainting, show that adaptive sampling can drastically accelerate MMP without sacrificing prediction accuracy."}],"corr_author":"1","status":"public","publication_status":"published","scopus_import":"1","month":"12","conference":{"start_date":"2012-12-03","location":"Lake Tahoe, NV, United States","name":"NIPS: Neural Information Processing Systems","end_date":"2012-12-06"},"oa_version":"None","page":"82 - 90","intvolume":"         1","article_processing_charge":"No","volume":1,"year":"2012","language":[{"iso":"eng"}],"date_published":"2012-12-01T00:00:00Z"},{"volume":301,"doi":"10.1016/j.jtbi.2012.02.021","article_processing_charge":"No","page":"161 - 173","date_published":"2012-05-21T00:00:00Z","language":[{"iso":"eng"}],"publication":"Journal of Theoretical Biology","status":"public","abstract":[{"text":"We study evolutionary game theory in a setting where individuals learn from each other. We extend the traditional approach by assuming that a population contains individuals with different learning abilities. In particular, we explore the situation where individuals have different search spaces, when attempting to learn the strategies of others. The search space of an individual specifies the set of strategies learnable by that individual. The search space is genetically given and does not change under social evolutionary dynamics. We introduce a general framework and study a specific example in the context of direct reciprocity. For this example, we obtain the counter intuitive result that cooperation can only evolve for intermediate benefit-to-cost ratios, while small and large benefit-to-cost ratios favor defection. Our paper is a step toward making a connection between computational learning theory and evolutionary game dynamics.","lang":"eng"}],"corr_author":"1","oa_version":"Submitted Version","type":"journal_article","author":[{"first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","full_name":"Chatterjee, Krishnendu","last_name":"Chatterjee"},{"last_name":"Zufferey","full_name":"Zufferey, Damien","orcid":"0000-0002-3197-8736","first_name":"Damien","id":"4397AC76-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Nowak, Martin","last_name":"Nowak","first_name":"Martin"}],"publisher":"Elsevier","day":"21","project":[{"name":"Quantitative Graph Games: Theory and Applications","grant_number":"279307","call_identifier":"FP7","_id":"2581B60A-B435-11E9-9278-68D0E5697425"},{"_id":"25832EC2-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","grant_number":"S 11407_N23","name":"Rigorous Systems Engineering"},{"grant_number":"P 23499-N23","name":"Modern Graph Algorithmic Techniques in Formal Verification","_id":"2584A770-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"},{"_id":"2587B514-B435-11E9-9278-68D0E5697425","name":"Microsoft Research Faculty Fellowship"}],"isi":1,"date_updated":"2025-09-30T08:20:22Z","intvolume":"       301","year":"2012","external_id":{"isi":["000303079500016"],"pmid":["22394652"]},"oa":1,"scopus_import":"1","publication_status":"published","month":"05","department":[{"_id":"KrCh"},{"_id":"ToHe"}],"quality_controlled":"1","title":"Evolutionary game dynamics in populations with different learners","date_created":"2018-12-11T11:59:55Z","main_file_link":[{"open_access":"1","url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3322297/"}],"citation":{"short":"K. Chatterjee, D. Zufferey, M. Nowak, Journal of Theoretical Biology 301 (2012) 161–173.","ista":"Chatterjee K, Zufferey D, Nowak M. 2012. Evolutionary game dynamics in populations with different learners. Journal of Theoretical Biology. 301, 161–173.","apa":"Chatterjee, K., Zufferey, D., &#38; Nowak, M. (2012). Evolutionary game dynamics in populations with different learners. <i>Journal of Theoretical Biology</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.jtbi.2012.02.021\">https://doi.org/10.1016/j.jtbi.2012.02.021</a>","ama":"Chatterjee K, Zufferey D, Nowak M. Evolutionary game dynamics in populations with different learners. <i>Journal of Theoretical Biology</i>. 2012;301:161-173. doi:<a href=\"https://doi.org/10.1016/j.jtbi.2012.02.021\">10.1016/j.jtbi.2012.02.021</a>","ieee":"K. Chatterjee, D. Zufferey, and M. Nowak, “Evolutionary game dynamics in populations with different learners,” <i>Journal of Theoretical Biology</i>, vol. 301. Elsevier, pp. 161–173, 2012.","chicago":"Chatterjee, Krishnendu, Damien Zufferey, and Martin Nowak. “Evolutionary Game Dynamics in Populations with Different Learners.” <i>Journal of Theoretical Biology</i>. Elsevier, 2012. <a href=\"https://doi.org/10.1016/j.jtbi.2012.02.021\">https://doi.org/10.1016/j.jtbi.2012.02.021</a>.","mla":"Chatterjee, Krishnendu, et al. “Evolutionary Game Dynamics in Populations with Different Learners.” <i>Journal of Theoretical Biology</i>, vol. 301, Elsevier, 2012, pp. 161–73, doi:<a href=\"https://doi.org/10.1016/j.jtbi.2012.02.021\">10.1016/j.jtbi.2012.02.021</a>."},"pmid":1,"ec_funded":1,"publist_id":"3946","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","_id":"2848"},{"month":"01","publication_status":"published","ddc":["000"],"scopus_import":"1","oa":1,"year":"2012","external_id":{"isi":["000315950100005"]},"intvolume":"        67","_id":"2849","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publist_id":"3943","has_accepted_license":"1","citation":{"chicago":"Edelsbrunner, Herbert, and Nataliya Strelkova. “On the Configuration Space of Steiner Minimal Trees.” <i>Russian Mathematical Surveys</i>. IOP Publishing, 2012. <a href=\"https://doi.org/10.1070/RM2012v067n06ABEH004820\">https://doi.org/10.1070/RM2012v067n06ABEH004820</a>.","ieee":"H. Edelsbrunner and N. Strelkova, “On the configuration space of Steiner minimal trees,” <i>Russian Mathematical Surveys</i>, vol. 67, no. 6. IOP Publishing, pp. 1167–1168, 2012.","mla":"Edelsbrunner, Herbert, and Nataliya Strelkova. “On the Configuration Space of Steiner Minimal Trees.” <i>Russian Mathematical Surveys</i>, vol. 67, no. 6, IOP Publishing, 2012, pp. 1167–68, doi:<a href=\"https://doi.org/10.1070/RM2012v067n06ABEH004820\">10.1070/RM2012v067n06ABEH004820</a>.","ista":"Edelsbrunner H, Strelkova N. 2012. On the configuration space of Steiner minimal trees. Russian Mathematical Surveys. 67(6), 1167–1168.","short":"H. Edelsbrunner, N. Strelkova, Russian Mathematical Surveys 67 (2012) 1167–1168.","apa":"Edelsbrunner, H., &#38; Strelkova, N. (2012). On the configuration space of Steiner minimal trees. <i>Russian Mathematical Surveys</i>. IOP Publishing. <a href=\"https://doi.org/10.1070/RM2012v067n06ABEH004820\">https://doi.org/10.1070/RM2012v067n06ABEH004820</a>","ama":"Edelsbrunner H, Strelkova N. On the configuration space of Steiner minimal trees. <i>Russian Mathematical Surveys</i>. 2012;67(6):1167-1168. doi:<a href=\"https://doi.org/10.1070/RM2012v067n06ABEH004820\">10.1070/RM2012v067n06ABEH004820</a>"},"date_created":"2018-12-11T11:59:55Z","quality_controlled":"1","department":[{"_id":"HeEd"}],"title":"On the configuration space of Steiner minimal trees","oa_version":"Submitted Version","status":"public","file":[{"relation":"main_file","checksum":"44ee8d173487e8ed41a51136816bbeb4","date_created":"2018-12-12T10:14:26Z","file_size":392021,"creator":"system","file_name":"IST-2016-546-v1+1_2014-J-05-SteinerMinTrees.pdf","date_updated":"2020-07-14T12:45:51Z","file_id":"5078","access_level":"open_access","content_type":"application/pdf"}],"publication":"Russian Mathematical Surveys","issue":"6","pubrep_id":"546","file_date_updated":"2020-07-14T12:45:51Z","language":[{"iso":"eng"}],"date_published":"2012-01-01T00:00:00Z","doi":"10.1070/RM2012v067n06ABEH004820","article_processing_charge":"No","page":"1167 - 1168","volume":67,"date_updated":"2025-09-30T08:19:37Z","isi":1,"day":"01","publisher":"IOP Publishing","author":[{"full_name":"Edelsbrunner, Herbert","last_name":"Edelsbrunner","first_name":"Herbert","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9823-6833"},{"full_name":"Strelkova, Nataliya","last_name":"Strelkova","first_name":"Nataliya"}],"type":"journal_article"},{"oa_version":"None","conference":{"end_date":"2012-10-05","name":"MODELS: Model-driven Engineering Languages and Systems","location":"Innsbruck, Austria","start_date":"2012-09-30"},"publication":"15th International Conference on Model Driven Engineering Languages and Systems","status":"public","abstract":[{"lang":"eng","text":"Formal verification aims to improve the quality of hardware and software by detecting errors before they do harm. At the basis of formal verification lies the logical notion of correctness, which purports to capture whether or not a circuit or program behaves as desired. We suggest that the boolean partition into correct and incorrect systems falls short of the practical need to assess the behavior of hardware and software in a more nuanced fashion against multiple criteria."}],"corr_author":"1","language":[{"iso":"eng"}],"OA_type":"closed access","date_published":"2012-09-01T00:00:00Z","volume":7590,"doi":"10.1007/978-3-642-33666-9_1","article_processing_charge":"No","page":"1 - 2","date_updated":"2025-05-20T07:30:56Z","day":"01","project":[{"grant_number":"267989","name":"Quantitative Reactive Modeling","_id":"25EE3708-B435-11E9-9278-68D0E5697425","call_identifier":"FP7"},{"grant_number":"S 11407_N23","name":"Rigorous Systems Engineering","_id":"25832EC2-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"}],"publisher":"Springer","author":[{"id":"40876CD8-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas A","orcid":"0000−0002−2985−7724","full_name":"Henzinger, Thomas A","last_name":"Henzinger"}],"type":"conference","month":"09","scopus_import":"1","alternative_title":["LNCS"],"publication_status":"published","year":"2012","intvolume":"      7590","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"2888","publist_id":"3870","ec_funded":1,"publication_identifier":{"eisbn":["9783642336669"],"eissn":["1611-3349"]},"citation":{"chicago":"Henzinger, Thomas A. “Quantitative Reactive Models.” In <i>15th International Conference on Model Driven Engineering Languages and Systems</i>, 7590:1–2. Springer, 2012. <a href=\"https://doi.org/10.1007/978-3-642-33666-9_1\">https://doi.org/10.1007/978-3-642-33666-9_1</a>.","ieee":"T. A. Henzinger, “Quantitative reactive models,” in <i>15th International Conference on Model Driven Engineering Languages and Systems</i>, Innsbruck, Austria, 2012, vol. 7590, pp. 1–2.","mla":"Henzinger, Thomas A. “Quantitative Reactive Models.” <i>15th International Conference on Model Driven Engineering Languages and Systems</i>, vol. 7590, Springer, 2012, pp. 1–2, doi:<a href=\"https://doi.org/10.1007/978-3-642-33666-9_1\">10.1007/978-3-642-33666-9_1</a>.","ista":"Henzinger TA. 2012. Quantitative reactive models. 15th International Conference on Model Driven Engineering Languages and Systems. MODELS: Model-driven Engineering Languages and Systems, LNCS, vol. 7590, 1–2.","short":"T.A. Henzinger, in:, 15th International Conference on Model Driven Engineering Languages and Systems, Springer, 2012, pp. 1–2.","ama":"Henzinger TA. Quantitative reactive models. In: <i>15th International Conference on Model Driven Engineering Languages and Systems</i>. Vol 7590. Springer; 2012:1-2. doi:<a href=\"https://doi.org/10.1007/978-3-642-33666-9_1\">10.1007/978-3-642-33666-9_1</a>","apa":"Henzinger, T. A. (2012). Quantitative reactive models. In <i>15th International Conference on Model Driven Engineering Languages and Systems</i> (Vol. 7590, pp. 1–2). Innsbruck, Austria: Springer. <a href=\"https://doi.org/10.1007/978-3-642-33666-9_1\">https://doi.org/10.1007/978-3-642-33666-9_1</a>"},"department":[{"_id":"ToHe"}],"quality_controlled":"1","title":"Quantitative reactive models","date_created":"2018-12-11T12:00:09Z"},{"abstract":[{"lang":"eng","text":"Systems are often specified using multiple requirements on their behavior. In practice, these requirements can be contradictory. The classical approach to specification, verification, and synthesis demands more detailed specifications that resolve any contradictions in the requirements. These detailed specifications are usually large, cumbersome, and hard to maintain or modify. In contrast, quantitative frameworks allow the formalization of the intuitive idea that what is desired is an implementation that comes &quot;closest&quot; to satisfying the mutually incompatible requirements, according to a measure of fit that can be defined by the requirements engineer. One flexible framework for quantifying how &quot;well&quot; an implementation satisfies a specification is offered by simulation distances that are parameterized by an error model. We introduce this framework, study its properties, and provide an algorithmic solution for the following quantitative synthesis question: given two (or more) behavioral requirements specified by possibly incompatible finite-state machines, and an error model, find the finite-state implementation that minimizes the maximal simulation distance to the given requirements. Furthermore, we generalize the framework to handle infinite alphabets (for example, realvalued domains). We also demonstrate how quantitative specifications based on simulation distances might lead to smaller and easier to modify specifications. Finally, we illustrate our approach using case studies on error correcting codes and scheduler synthesis."}],"status":"public","publication_status":"published","scopus_import":1,"publication":"Proceedings of the tenth ACM international conference on Embedded software","month":"10","conference":{"name":"EMSOFT: Embedded Software ","location":"Tampere, Finland","start_date":"2012-10-07","end_date":"2012-10-12"},"oa_version":"None","page":"53 - 62","doi":"10.1145/2380356.2380371","year":"2012","language":[{"iso":"eng"}],"date_published":"2012-10-01T00:00:00Z","project":[{"_id":"25EE3708-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"267989","name":"Quantitative Reactive Modeling"},{"_id":"25832EC2-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","grant_number":"S 11407_N23","name":"Rigorous Systems Engineering"}],"ec_funded":1,"publist_id":"3868","day":"01","_id":"2890","date_updated":"2021-01-12T07:00:30Z","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","type":"conference","date_created":"2018-12-11T12:00:10Z","title":"Synthesis from incompatible specifications","department":[{"_id":"ToHe"}],"quality_controlled":"1","citation":{"apa":"Cerny, P., Gopi, S., Henzinger, T. A., Radhakrishna, A., &#38; Totla, N. (2012). Synthesis from incompatible specifications. In <i>Proceedings of the tenth ACM international conference on Embedded software</i> (pp. 53–62). Tampere, Finland: ACM. <a href=\"https://doi.org/10.1145/2380356.2380371\">https://doi.org/10.1145/2380356.2380371</a>","ama":"Cerny P, Gopi S, Henzinger TA, Radhakrishna A, Totla N. Synthesis from incompatible specifications. In: <i>Proceedings of the Tenth ACM International Conference on Embedded Software</i>. ACM; 2012:53-62. doi:<a href=\"https://doi.org/10.1145/2380356.2380371\">10.1145/2380356.2380371</a>","ista":"Cerny P, Gopi S, Henzinger TA, Radhakrishna A, Totla N. 2012. Synthesis from incompatible specifications. Proceedings of the tenth ACM international conference on Embedded software. EMSOFT: Embedded Software , 53–62.","short":"P. Cerny, S. Gopi, T.A. Henzinger, A. Radhakrishna, N. Totla, in:, Proceedings of the Tenth ACM International Conference on Embedded Software, ACM, 2012, pp. 53–62.","mla":"Cerny, Pavol, et al. “Synthesis from Incompatible Specifications.” <i>Proceedings of the Tenth ACM International Conference on Embedded Software</i>, ACM, 2012, pp. 53–62, doi:<a href=\"https://doi.org/10.1145/2380356.2380371\">10.1145/2380356.2380371</a>.","chicago":"Cerny, Pavol, Sivakanth Gopi, Thomas A Henzinger, Arjun Radhakrishna, and Nishant Totla. “Synthesis from Incompatible Specifications.” In <i>Proceedings of the Tenth ACM International Conference on Embedded Software</i>, 53–62. ACM, 2012. <a href=\"https://doi.org/10.1145/2380356.2380371\">https://doi.org/10.1145/2380356.2380371</a>.","ieee":"P. Cerny, S. Gopi, T. A. Henzinger, A. Radhakrishna, and N. Totla, “Synthesis from incompatible specifications,” in <i>Proceedings of the tenth ACM international conference on Embedded software</i>, Tampere, Finland, 2012, pp. 53–62."},"publisher":"ACM","author":[{"full_name":"Cerny, Pavol","last_name":"Cerny","id":"4DCBEFFE-F248-11E8-B48F-1D18A9856A87","first_name":"Pavol"},{"last_name":"Gopi","full_name":"Gopi, Sivakanth","first_name":"Sivakanth"},{"orcid":"0000−0002−2985−7724","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas A","full_name":"Henzinger, Thomas A","last_name":"Henzinger"},{"last_name":"Radhakrishna","full_name":"Radhakrishna, Arjun","id":"3B51CAC4-F248-11E8-B48F-1D18A9856A87","first_name":"Arjun"},{"last_name":"Totla","full_name":"Totla, Nishant","first_name":"Nishant"}]},{"day":"01","date_updated":"2026-06-18T18:37:14Z","type":"journal_article","author":[{"full_name":"Edelsbrunner, Herbert","last_name":"Edelsbrunner","orcid":"0000-0002-9823-6833","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","first_name":"Herbert"},{"first_name":"Oleg","full_name":"Musin, Oleg","last_name":"Musin"},{"first_name":"Alexey","last_name":"Ukhalov","full_name":"Ukhalov, Alexey"},{"first_name":"Olga","last_name":"Yakimova","full_name":"Yakimova, Olga"},{"full_name":"Alexeev, Vladislav","last_name":"Alexeev","first_name":"Vladislav"},{"first_name":"Victoriya","last_name":"Bogaevskaya","full_name":"Bogaevskaya, Victoriya"},{"full_name":"Gorohov, Andrey","last_name":"Gorohov","first_name":"Andrey"},{"last_name":"Preobrazhenskaya","full_name":"Preobrazhenskaya, Margarita","first_name":"Margarita"}],"publisher":"Russian Academy of Sciences","status":"public","abstract":[{"lang":"eng","text":"We present an algorithm for simplifying linear cartographic objects and results obtained with a computer program implementing this algorithm. "}],"publication":"Modeling and Analysis of Information Systems","issue":"6","oa_version":"Published Version","article_processing_charge":"No","page":"152 - 160","volume":19,"language":[{"iso":"rus"}],"date_published":"2012-12-01T00:00:00Z","publist_id":"3845","_id":"2902","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","main_file_link":[{"url":"http://mi.mathnet.ru/eng/mais280","open_access":"1"}],"date_created":"2018-12-11T12:00:15Z","quality_controlled":"1","department":[{"_id":"HeEd"}],"title":"Fractal and computational geometry for generalizing cartographic objects","citation":{"chicago":"Edelsbrunner, Herbert, Oleg Musin, Alexey Ukhalov, Olga Yakimova, Vladislav Alexeev, Victoriya Bogaevskaya, Andrey Gorohov, and Margarita Preobrazhenskaya. “Fractal and computational geometry for generalizing cartographic objects.” <i>Modeling and Analysis of Information Systems</i>. Russian Academy of Sciences, 2012.","ieee":"H. Edelsbrunner <i>et al.</i>, “Fractal and computational geometry for generalizing cartographic objects,” <i>Modeling and Analysis of Information Systems</i>, vol. 19, no. 6. Russian Academy of Sciences, pp. 152–160, 2012.","mla":"Edelsbrunner, Herbert, et al. “Fractal and computational geometry for generalizing cartographic objects.” <i>Modeling and Analysis of Information Systems</i>, vol. 19, no. 6, Russian Academy of Sciences, 2012, pp. 152–60.","ista":"Edelsbrunner H, Musin O, Ukhalov A, Yakimova O, Alexeev V, Bogaevskaya V, Gorohov A, Preobrazhenskaya M. 2012. Fractal and computational geometry for generalizing cartographic objects. Modeling and Analysis of Information Systems. 19(6), 152–160.","short":"H. Edelsbrunner, O. Musin, A. Ukhalov, O. Yakimova, V. Alexeev, V. Bogaevskaya, A. Gorohov, M. Preobrazhenskaya, Modeling and Analysis of Information Systems 19 (2012) 152–160.","apa":"Edelsbrunner, H., Musin, O., Ukhalov, A., Yakimova, O., Alexeev, V., Bogaevskaya, V., … Preobrazhenskaya, M. (2012). Fractal and computational geometry for generalizing cartographic objects. <i>Modeling and Analysis of Information Systems</i>. Russian Academy of Sciences.","ama":"Edelsbrunner H, Musin O, Ukhalov A, et al. Fractal and computational geometry for generalizing cartographic objects. <i>Modeling and Analysis of Information Systems</i>. 2012;19(6):152-160."},"publication_status":"published","ddc":["500"],"article_type":"original","oa":1,"month":"12","intvolume":"        19","year":"2012"},{"citation":{"mla":"Edelsbrunner, Herbert, and Olga Symonova. <i>The Adaptive Topology of a Digital Image</i>. IEEE, 2012, pp. 41–48, doi:<a href=\"https://doi.org/10.1109/ISVD.2012.11\">10.1109/ISVD.2012.11</a>.","chicago":"Edelsbrunner, Herbert, and Olga Symonova. “The Adaptive Topology of a Digital Image,” 41–48. IEEE, 2012. <a href=\"https://doi.org/10.1109/ISVD.2012.11\">https://doi.org/10.1109/ISVD.2012.11</a>.","ieee":"H. Edelsbrunner and O. Symonova, “The adaptive topology of a digital image,” presented at the ISVD: International Symposium on Voronoi Diagrams in Science and Engineering, New Brunswick, NJ, USA , 2012, pp. 41–48.","ama":"Edelsbrunner H, Symonova O. The adaptive topology of a digital image. In: IEEE; 2012:41-48. doi:<a href=\"https://doi.org/10.1109/ISVD.2012.11\">10.1109/ISVD.2012.11</a>","apa":"Edelsbrunner, H., &#38; Symonova, O. (2012). The adaptive topology of a digital image (pp. 41–48). Presented at the ISVD: International Symposium on Voronoi Diagrams in Science and Engineering, New Brunswick, NJ, USA : IEEE. <a href=\"https://doi.org/10.1109/ISVD.2012.11\">https://doi.org/10.1109/ISVD.2012.11</a>","ista":"Edelsbrunner H, Symonova O. 2012. The adaptive topology of a digital image. ISVD: International Symposium on Voronoi Diagrams in Science and Engineering, 41–48.","short":"H. Edelsbrunner, O. Symonova, in:, IEEE, 2012, pp. 41–48."},"has_accepted_license":"1","date_created":"2018-12-11T12:00:15Z","title":"The adaptive topology of a digital image","department":[{"_id":"HeEd"},{"_id":"MaJö"}],"quality_controlled":"1","_id":"2903","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","publist_id":"3844","year":"2012","month":"08","publication_status":"published","ddc":["000"],"oa":1,"scopus_import":1,"author":[{"last_name":"Edelsbrunner","full_name":"Edelsbrunner, Herbert","first_name":"Herbert","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9823-6833"},{"id":"3C0C7BC6-F248-11E8-B48F-1D18A9856A87","first_name":"Olga","orcid":"0000-0003-2012-9947","last_name":"Symonova","full_name":"Symonova, Olga"}],"publisher":"IEEE","type":"conference","date_updated":"2024-10-09T20:54:57Z","day":"06","language":[{"iso":"eng"}],"date_published":"2012-08-06T00:00:00Z","file_date_updated":"2020-07-14T12:45:52Z","pubrep_id":"545","page":"41 - 48","doi":"10.1109/ISVD.2012.11","conference":{"start_date":"2012-06-27","location":"New Brunswick, NJ, USA ","name":"ISVD: International Symposium on Voronoi Diagrams in Science and Engineering","end_date":"2012-06-29"},"oa_version":"Submitted Version","abstract":[{"lang":"eng","text":"In order to enjoy a digital version of the Jordan Curve Theorem, it is common to use the closed topology for the foreground and the open topology for the background of a 2-dimensional binary image. In this paper, we introduce a single topology that enjoys this theorem for all thresholds decomposing a real-valued image into foreground and background. This topology is easy to construct and it generalizes to n-dimensional images."}],"corr_author":"1","status":"public","file":[{"access_level":"open_access","file_name":"IST-2016-545-v1+1_2012-P-10-AdaptiveTopology.pdf","file_id":"4765","date_updated":"2020-07-14T12:45:52Z","file_size":760548,"creator":"system","content_type":"application/pdf","checksum":"444869a4e8abf07834f88b6e5cb5e9c3","date_created":"2018-12-12T10:09:41Z","relation":"main_file"}]},{"month":"01","publication_status":"published","ddc":["510"],"oa":1,"article_type":"original","scopus_import":"1","year":"2012","external_id":{"isi":["000315243100011"]},"intvolume":"        24","_id":"2904","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","publication_identifier":{"eissn":["2118-8572"],"issn":["1246-7405"]},"publist_id":"3843","has_accepted_license":"1","citation":{"mla":"Pausinger, Florian. “Weak Multipliers for Generalized van Der Corput Sequences.” <i>Journal de Theorie Des Nombres Des Bordeaux</i>, vol. 24, no. 3, Université de Bordeaux, 2012, pp. 729–49, doi:<a href=\"https://doi.org/10.5802/jtnb.819\">10.5802/jtnb.819</a>.","chicago":"Pausinger, Florian. “Weak Multipliers for Generalized van Der Corput Sequences.” <i>Journal de Theorie Des Nombres Des Bordeaux</i>. Université de Bordeaux, 2012. <a href=\"https://doi.org/10.5802/jtnb.819\">https://doi.org/10.5802/jtnb.819</a>.","ieee":"F. Pausinger, “Weak multipliers for generalized van der Corput sequences,” <i>Journal de Theorie des Nombres des Bordeaux</i>, vol. 24, no. 3. Université de Bordeaux, pp. 729–749, 2012.","ama":"Pausinger F. Weak multipliers for generalized van der Corput sequences. <i>Journal de Theorie des Nombres des Bordeaux</i>. 2012;24(3):729-749. doi:<a href=\"https://doi.org/10.5802/jtnb.819\">10.5802/jtnb.819</a>","apa":"Pausinger, F. (2012). Weak multipliers for generalized van der Corput sequences. <i>Journal de Theorie Des Nombres Des Bordeaux</i>. Université de Bordeaux. <a href=\"https://doi.org/10.5802/jtnb.819\">https://doi.org/10.5802/jtnb.819</a>","ista":"Pausinger F. 2012. Weak multipliers for generalized van der Corput sequences. Journal de Theorie des Nombres des Bordeaux. 24(3), 729–749.","short":"F. Pausinger, Journal de Theorie Des Nombres Des Bordeaux 24 (2012) 729–749."},"date_created":"2018-12-11T12:00:15Z","quality_controlled":"1","department":[{"_id":"HeEd"}],"title":"Weak multipliers for generalized van der Corput sequences","oa_version":"Published Version","status":"public","abstract":[{"text":"Generalized van der Corput sequences are onedimensional, infinite sequences in the unit interval. They are generated from permutations in integer base b and are the building blocks of the multi-dimensional Halton sequences. Motivated by recent progress of Atanassov on the uniform distribution behavior of Halton sequences, we study, among others, permutations of the form P(i) = ai (mod b) for coprime integers a and b. We show that multipliers a that either divide b - 1 or b + 1 generate van der Corput sequences with weak distribution properties. We give explicit lower bounds for the asymptotic distribution behavior of these sequences and relate them to sequences generated from the identity permutation in smaller bases, which are, due to Faure, the weakest distributed generalized van der Corput sequences.","lang":"eng"},{"lang":"fre","text":"Les suites de Van der Corput généralisées sont dessuites unidimensionnelles et infinies dans l’intervalle de l’unité.Elles sont générées par permutations des entiers de la basebetsont les éléments constitutifs des suites multi-dimensionnelles deHalton. Suites aux progrès récents d’Atanassov concernant le com-portement de distribution uniforme des suites de Halton nous nousintéressons aux permutations de la formuleP(i)  =ai(modb)pour les entiers premiers entre euxaetb. Dans cet article nousidentifions des multiplicateursagénérant des suites de Van derCorput ayant une mauvaise distribution. Nous donnons les bornesinférieures explicites pour cette distribution asymptotique asso-ciée à ces suites et relions ces dernières aux suites générées parpermutation d’identité, qui sont, selon Faure, les moins bien dis-tribuées des suites généralisées de Van der Corput dans une basedonnée."}],"file":[{"file_size":819275,"creator":"dernst","access_level":"open_access","file_id":"7819","file_name":"JTNB_2012__24_3_729_0.pdf","date_updated":"2020-07-14T12:45:52Z","content_type":"application/pdf","date_created":"2020-05-11T12:40:39Z","checksum":"6954bfe9d7f4119fbdda7a11cf0f5c67","relation":"main_file"}],"publication":"Journal de Theorie des Nombres des Bordeaux","issue":"3","file_date_updated":"2020-07-14T12:45:52Z","date_published":"2012-01-01T00:00:00Z","language":[{"iso":"eng"}],"article_processing_charge":"No","doi":"10.5802/jtnb.819","page":"729 - 749","volume":24,"date_updated":"2025-09-30T08:18:15Z","isi":1,"day":"01","publisher":"Université de Bordeaux","author":[{"full_name":"Pausinger, Florian","last_name":"Pausinger","id":"2A77D7A2-F248-11E8-B48F-1D18A9856A87","first_name":"Florian","orcid":"0000-0002-8379-3768"}],"type":"journal_article"},{"month":"10","oa_version":"None","publication_status":"published","status":"public","issue":"6","publication":"Russian Mathematical Surveys","year":"2012","date_published":"2012-10-01T00:00:00Z","language":[{"iso":"eng"}],"page":"1167–1168","intvolume":"        67","doi":"10.4213/rm9503","article_processing_charge":"No","volume":67,"_id":"2912","date_updated":"2023-10-17T11:40:39Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publist_id":"3831","day":"01","citation":{"mla":"Edelsbrunner, Herbert, and Nataliya Strelkova. “On the Configuration Space for the Shortest Networks.” <i>Russian Mathematical Surveys</i>, vol. 67, no. 6, Russian Academy of Sciences, 2012, pp. 1167–1168, doi:<a href=\"https://doi.org/10.4213/rm9503\">10.4213/rm9503</a>.","ieee":"H. Edelsbrunner and N. Strelkova, “On the configuration space for the shortest networks,” <i>Russian Mathematical Surveys</i>, vol. 67, no. 6. Russian Academy of Sciences, pp. 1167–1168, 2012.","chicago":"Edelsbrunner, Herbert, and Nataliya Strelkova. “On the Configuration Space for the Shortest Networks.” <i>Russian Mathematical Surveys</i>. Russian Academy of Sciences, 2012. <a href=\"https://doi.org/10.4213/rm9503\">https://doi.org/10.4213/rm9503</a>.","ama":"Edelsbrunner H, Strelkova N. On the configuration space for the shortest networks. <i>Russian Mathematical Surveys</i>. 2012;67(6):1167–1168. doi:<a href=\"https://doi.org/10.4213/rm9503\">10.4213/rm9503</a>","apa":"Edelsbrunner, H., &#38; Strelkova, N. (2012). On the configuration space for the shortest networks. <i>Russian Mathematical Surveys</i>. Russian Academy of Sciences. <a href=\"https://doi.org/10.4213/rm9503\">https://doi.org/10.4213/rm9503</a>","short":"H. Edelsbrunner, N. Strelkova, Russian Mathematical Surveys 67 (2012) 1167–1168.","ista":"Edelsbrunner H, Strelkova N. 2012. On the configuration space for the shortest networks. Russian Mathematical Surveys. 67(6), 1167–1168."},"author":[{"full_name":"Edelsbrunner, Herbert","last_name":"Edelsbrunner","orcid":"0000-0002-9823-6833","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","first_name":"Herbert"},{"first_name":"Nataliya","full_name":"Strelkova, Nataliya","last_name":"Strelkova"}],"publisher":"Russian Academy of Sciences","date_created":"2018-12-11T12:00:18Z","type":"journal_article","title":"On the configuration space for the shortest networks","quality_controlled":"1","department":[{"_id":"HeEd"}]},{"month":"10","oa_version":"None","acknowledgement":"The project receives funding from the European Community’s Seventh Framework Programme under grant agreement\r\nno. ICT- 248273 GeRT.","publication_status":"published","status":"public","year":"2012","date_published":"2012-10-11T00:00:00Z","language":[{"iso":"eng"}],"article_processing_charge":"No","date_updated":"2023-10-17T07:58:59Z","_id":"2915","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publist_id":"3828","day":"11","citation":{"short":"O. Kroemer, C. Lampert, J. Peters, in:, Deutsches Zentrum für Luft und Raumfahrt, 2012.","ista":"Kroemer O, Lampert C, Peters J. 2012. Multi-modal learning for dynamic tactile sensing","ama":"Kroemer O, Lampert C, Peters J. Multi-modal learning for dynamic tactile sensing. In: Deutsches Zentrum für Luft und Raumfahrt; 2012.","apa":"Kroemer, O., Lampert, C., &#38; Peters, J. (2012). Multi-modal learning for dynamic tactile sensing. Deutsches Zentrum für Luft und Raumfahrt.","ieee":"O. Kroemer, C. Lampert, and J. Peters, “Multi-modal learning for dynamic tactile sensing,” 2012.","chicago":"Kroemer, Oliver, Christoph Lampert, and Jan Peters. “Multi-Modal Learning for Dynamic Tactile Sensing.” Deutsches Zentrum für Luft und Raumfahrt, 2012.","mla":"Kroemer, Oliver, et al. <i>Multi-Modal Learning for Dynamic Tactile Sensing</i>. Deutsches Zentrum für Luft und Raumfahrt, 2012."},"author":[{"last_name":"Kroemer","full_name":"Kroemer, Oliver","first_name":"Oliver"},{"last_name":"Lampert","full_name":"Lampert, Christoph","orcid":"0000-0001-8622-7887","first_name":"Christoph","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Peters","full_name":"Peters, Jan","first_name":"Jan"}],"publisher":"Deutsches Zentrum für Luft und Raumfahrt","date_created":"2018-12-11T12:00:19Z","type":"conference","title":"Multi-modal learning for dynamic tactile sensing","quality_controlled":"1","department":[{"_id":"ChLa"}]},{"day":"07","project":[{"call_identifier":"FP7","_id":"25EE3708-B435-11E9-9278-68D0E5697425","name":"Quantitative Reactive Modeling","grant_number":"267989"},{"name":"Rigorous Systems Engineering","grant_number":"S 11407_N23","call_identifier":"FWF","_id":"25832EC2-B435-11E9-9278-68D0E5697425"},{"call_identifier":"FWF","_id":"2584A770-B435-11E9-9278-68D0E5697425","name":"Modern Graph Algorithmic Techniques in Formal Verification","grant_number":"P 23499-N23"},{"_id":"2581B60A-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","grant_number":"279307","name":"Quantitative Graph Games: Theory and Applications"},{"_id":"2587B514-B435-11E9-9278-68D0E5697425","name":"Microsoft Research Faculty Fellowship"}],"date_updated":"2025-09-29T13:14:24Z","type":"conference","author":[{"full_name":"Cerny, Pavol","last_name":"Cerny","id":"4DCBEFFE-F248-11E8-B48F-1D18A9856A87","first_name":"Pavol"},{"last_name":"Chmelik","full_name":"Chmelik, Martin","first_name":"Martin","id":"3624234E-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Henzinger","full_name":"Henzinger, Thomas A","orcid":"0000−0002−2985−7724","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas A"},{"id":"3B51CAC4-F248-11E8-B48F-1D18A9856A87","first_name":"Arjun","full_name":"Radhakrishna, Arjun","last_name":"Radhakrishna"}],"publisher":"EPTCS","publication":"Electronic Proceedings in Theoretical Computer Science","abstract":[{"lang":"eng","text":"The classical (boolean) notion of refinement for behavioral interfaces of system components is the alternating refinement preorder. In this paper, we define a quantitative measure for interfaces, called interface simulation distance. It makes the alternating refinement preorder quantitative by, intu- itively, tolerating errors (while counting them) in the alternating simulation game. We show that the interface simulation distance satisfies the triangle inequality, that the distance between two interfaces does not increase under parallel composition with a third interface, and that the distance between two interfaces can be bounded from above and below by distances between abstractions of the two interfaces. We illustrate the framework, and the properties of the distances under composition of interfaces, with two case studies."}],"status":"public","oa_version":"Submitted Version","conference":{"name":"GandALF: Games, Automata, Logic, and Formal Verification","start_date":"2012-09-06","location":"Napoli, Italy","end_date":"2012-09-08"},"volume":96,"page":"29 - 42","doi":"10.4204/EPTCS.96.3","date_published":"2012-10-07T00:00:00Z","language":[{"iso":"eng"}],"publist_id":"3827","ec_funded":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"2916","title":"Interface Simulation Distances","department":[{"_id":"ToHe"},{"_id":"KrCh"}],"quality_controlled":"1","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1210.2450"}],"date_created":"2018-12-11T12:00:19Z","citation":{"ama":"Cerny P, Chmelik M, Henzinger TA, Radhakrishna A. Interface Simulation Distances. In: <i>Electronic Proceedings in Theoretical Computer Science</i>. Vol 96. EPTCS; 2012:29-42. doi:<a href=\"https://doi.org/10.4204/EPTCS.96.3\">10.4204/EPTCS.96.3</a>","apa":"Cerny, P., Chmelik, M., Henzinger, T. A., &#38; Radhakrishna, A. (2012). Interface Simulation Distances. In <i>Electronic Proceedings in Theoretical Computer Science</i> (Vol. 96, pp. 29–42). Napoli, Italy: EPTCS. <a href=\"https://doi.org/10.4204/EPTCS.96.3\">https://doi.org/10.4204/EPTCS.96.3</a>","short":"P. Cerny, M. Chmelik, T.A. Henzinger, A. Radhakrishna, in:, Electronic Proceedings in Theoretical Computer Science, EPTCS, 2012, pp. 29–42.","ista":"Cerny P, Chmelik M, Henzinger TA, Radhakrishna A. 2012. Interface Simulation Distances. Electronic Proceedings in Theoretical Computer Science. GandALF: Games, Automata, Logic, and Formal Verification vol. 96, 29–42.","mla":"Cerny, Pavol, et al. “Interface Simulation Distances.” <i>Electronic Proceedings in Theoretical Computer Science</i>, vol. 96, EPTCS, 2012, pp. 29–42, doi:<a href=\"https://doi.org/10.4204/EPTCS.96.3\">10.4204/EPTCS.96.3</a>.","ieee":"P. Cerny, M. Chmelik, T. A. Henzinger, and A. Radhakrishna, “Interface Simulation Distances,” in <i>Electronic Proceedings in Theoretical Computer Science</i>, Napoli, Italy, 2012, vol. 96, pp. 29–42.","chicago":"Cerny, Pavol, Martin Chmelik, Thomas A Henzinger, and Arjun Radhakrishna. “Interface Simulation Distances.” In <i>Electronic Proceedings in Theoretical Computer Science</i>, 96:29–42. EPTCS, 2012. <a href=\"https://doi.org/10.4204/EPTCS.96.3\">https://doi.org/10.4204/EPTCS.96.3</a>."},"oa":1,"scopus_import":1,"publication_status":"published","month":"10","related_material":{"record":[{"id":"1733","relation":"later_version","status":"public"}]},"intvolume":"        96","external_id":{"arxiv":["1210.2450"]},"arxiv":1,"year":"2012"},{"date_published":"2012-11-06T00:00:00Z","language":[{"iso":"eng"}],"volume":12,"article_processing_charge":"No","doi":"10.1017/S1473550412000407","page":"53 - 62","oa_version":"None","publication":"International Journal of Astrobiology","issue":"1","status":"public","abstract":[{"lang":"eng","text":"The search for extra-terrestrial intelligence (SETI) has been performed principally as a one-way survey, listening of radio frequencies across the Milky Way and other galaxies. However, scientists have engaged in an active messaging only rarely. This suggests the simple rationale that if other civilizations exist and take a similar approach to ours, namely listening but not broadcasting, the result is a silent universe. A simple game theoretical model, the prisoner's dilemma, explains this situation: each player (civilization) can passively search (defect), or actively search and broadcast (cooperate). In order to maximize the payoff (or, equivalently, minimize the risks) the best strategy is not to broadcast. In fact, the active search has been opposed on the basis that it might be dangerous to expose ourselves. However, most of these ideas have not been based on objective arguments, and ignore accounting of the possible gains and losses. Thus, the question stands: should we perform an active search? I develop a game-theoretical framework where civilizations can be of different types, and explicitly apply it to a situation where societies are either interested in establishing a two-way communication or belligerent and in urge to exploit ours. The framework gives a quantitative solution (a mixed-strategy), which is how frequent we should perform the active SETI. This frequency is roughly proportional to the inverse of the risk, and can be extremely small. However, given the immense amount of stars being scanned, it supports active SETI. The model is compared with simulations, and the possible actions are evaluated through the San Marino scale, measuring the risks of messaging."}],"corr_author":"1","publisher":"Cambridge University Press","author":[{"orcid":"0000-0002-5985-7653","first_name":"Harold","id":"2A181218-F248-11E8-B48F-1D18A9856A87","last_name":"Vladar","full_name":"Vladar, Harold"}],"type":"journal_article","date_updated":"2025-09-29T13:28:52Z","day":"06","isi":1,"year":"2012","external_id":{"isi":["000312526700008"]},"intvolume":"        12","month":"11","scopus_import":"1","publication_status":"published","citation":{"chicago":"Vladar, Harold de. “The Game of Active Search for Extra Terrestrial Intelligence Breaking the Great Silence .” <i>International Journal of Astrobiology</i>. Cambridge University Press, 2012. <a href=\"https://doi.org/10.1017/S1473550412000407\">https://doi.org/10.1017/S1473550412000407</a>.","ieee":"H. de Vladar, “The game of active search for extra terrestrial intelligence Breaking the Great Silence ,” <i>International Journal of Astrobiology</i>, vol. 12, no. 1. Cambridge University Press, pp. 53–62, 2012.","mla":"de Vladar, Harold. “The Game of Active Search for Extra Terrestrial Intelligence Breaking the Great Silence .” <i>International Journal of Astrobiology</i>, vol. 12, no. 1, Cambridge University Press, 2012, pp. 53–62, doi:<a href=\"https://doi.org/10.1017/S1473550412000407\">10.1017/S1473550412000407</a>.","ista":"de Vladar H. 2012. The game of active search for extra terrestrial intelligence Breaking the Great Silence . International Journal of Astrobiology. 12(1), 53–62.","short":"H. de Vladar, International Journal of Astrobiology 12 (2012) 53–62.","apa":"de Vladar, H. (2012). The game of active search for extra terrestrial intelligence Breaking the Great Silence . <i>International Journal of Astrobiology</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/S1473550412000407\">https://doi.org/10.1017/S1473550412000407</a>","ama":"de Vladar H. The game of active search for extra terrestrial intelligence Breaking the Great Silence . <i>International Journal of Astrobiology</i>. 2012;12(1):53-62. doi:<a href=\"https://doi.org/10.1017/S1473550412000407\">10.1017/S1473550412000407</a>"},"quality_controlled":"1","department":[{"_id":"NiBa"}],"title":"The game of active search for extra terrestrial intelligence Breaking the Great Silence ","date_created":"2018-12-11T12:00:19Z","user_id":"317138e5-6ab7-11ef-aa6d-ffef3953e345","_id":"2917","publist_id":"3821"},{"author":[{"full_name":"Kolmogorov, Vladimir","last_name":"Kolmogorov","id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87","first_name":"Vladimir"},{"last_name":"Schoenemann","full_name":"Schoenemann, Thomas","first_name":"Thomas"}],"citation":{"apa":"Kolmogorov, V., &#38; Schoenemann, T. (n.d.). Generalized sequential tree-reweighted message passing. <i>arXiv</i>. <a href=\"https://doi.org/10.48550/arXiv.1205.6352\">https://doi.org/10.48550/arXiv.1205.6352</a>","ama":"Kolmogorov V, Schoenemann T. Generalized sequential tree-reweighted message passing. <i>arXiv</i>. doi:<a href=\"https://doi.org/10.48550/arXiv.1205.6352\">10.48550/arXiv.1205.6352</a>","short":"V. Kolmogorov, T. Schoenemann, ArXiv (n.d.).","ista":"Kolmogorov V, Schoenemann T. Generalized sequential tree-reweighted message passing. arXiv, 1205.6352.","mla":"Kolmogorov, Vladimir, and Thomas Schoenemann. “Generalized Sequential Tree-Reweighted Message Passing.” <i>ArXiv</i>, 1205.6352, doi:<a href=\"https://doi.org/10.48550/arXiv.1205.6352\">10.48550/arXiv.1205.6352</a>.","ieee":"V. Kolmogorov and T. Schoenemann, “Generalized sequential tree-reweighted message passing,” <i>arXiv</i>. .","chicago":"Kolmogorov, Vladimir, and Thomas Schoenemann. “Generalized Sequential Tree-Reweighted Message Passing.” <i>ArXiv</i>, n.d. <a href=\"https://doi.org/10.48550/arXiv.1205.6352\">https://doi.org/10.48550/arXiv.1205.6352</a>."},"department":[{"_id":"VlKo"}],"title":"Generalized sequential tree-reweighted message passing","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1205.6352"}],"type":"preprint","date_created":"2018-12-11T12:00:23Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2025-07-08T07:19:42Z","_id":"2928","day":"29","publist_id":"3809","article_number":"1205.6352","date_published":"2012-05-29T00:00:00Z","language":[{"iso":"eng"}],"year":"2012","external_id":{"arxiv":["1205.6352"]},"arxiv":1,"doi":"10.48550/arXiv.1205.6352","article_processing_charge":"No","oa_version":"Preprint","month":"05","oa":1,"publication":"arXiv","publication_status":"submitted","status":"public","abstract":[{"lang":"eng","text":"     This paper addresses the problem of approximate MAP-MRF inference in general graphical models. Following [36], we consider a family of linear programming relaxations of the problem where each relaxation is specified by a set of nested pairs of factors for which the marginalization constraint needs to be enforced. We develop a generalization of the TRW-S algorithm [9] for this problem, where we use a decomposition into junction chains, monotonic w.r.t. some ordering on the nodes. This generalizes the monotonic chains in [9] in a natural way. We also show how to deal with nested factors in an efficient way. Experiments show an improvement over min-sum diffusion, MPLP and subgradient ascent algorithms on a number of computer vision and natural language processing problems. "}],"corr_author":"1"}]