---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '19443'
abstract:
- lang: eng
text: In cryo-electron microscopy, accurate particle localization and classification
are imperative. Recent deep learning solutions, though successful, require extensive
training datasets. The protracted generation time of physics-based models, often
employed to produce these datasets, limits their broad applicability. We introduce
FakET, a method based on neural style transfer, capable of simulating the forward
operator of any cryo transmission electron microscope. It can be used to adapt
a synthetic training dataset according to reference data producing high-quality
simulated micrographs or tilt-series. To assess the quality of our generated data,
we used it to train a state-of-the-art localization and classification architecture
and compared its performance with a counterpart trained on benchmark data. Remarkably,
our technique matches the performance, boosts data generation speed 750x, uses
33x less memory, and scales well to typical transmission electron microscope detector
sizes. It leverages GPU acceleration and parallel processing. The source code
is available at https://github.com/paloha/faket/.
acknowledgement: The IMP and D.H. are generously funded by Boehringer Ingelheim. We
thank Julius Berner from the Mathematical Data Science group @ UniVie, Ilja Gubins
and Marten Chaillet from the SHREC team, and the members of the Haselbach lab for
helpful discussions.
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Pavol
full_name: Harar, Pavol
id: e03d953a-6e8c-11ef-99e4-f0717d385cd5
last_name: Harar
orcid: 0000-0001-5206-1794
- first_name: Lukas
full_name: Herrmann, Lukas
last_name: Herrmann
- first_name: Philipp
full_name: Grohs, Philipp
last_name: Grohs
- first_name: David
full_name: Haselbach, David
last_name: Haselbach
citation:
ama: 'Harar P, Herrmann L, Grohs P, Haselbach D. FakET: Simulating cryo-electron
tomograms with neural style transfer. Structure. 2025;33(4):820-827.e4.
doi:10.1016/j.str.2025.01.020'
apa: 'Harar, P., Herrmann, L., Grohs, P., & Haselbach, D. (2025). FakET: Simulating
cryo-electron tomograms with neural style transfer. Structure. Cell Press.
https://doi.org/10.1016/j.str.2025.01.020'
chicago: 'Harar, Pavol, Lukas Herrmann, Philipp Grohs, and David Haselbach. “FakET:
Simulating Cryo-Electron Tomograms with Neural Style Transfer.” Structure.
Cell Press, 2025. https://doi.org/10.1016/j.str.2025.01.020.'
ieee: 'P. Harar, L. Herrmann, P. Grohs, and D. Haselbach, “FakET: Simulating cryo-electron
tomograms with neural style transfer,” Structure, vol. 33, no. 4. Cell
Press, p. 820–827.e4, 2025.'
ista: 'Harar P, Herrmann L, Grohs P, Haselbach D. 2025. FakET: Simulating cryo-electron
tomograms with neural style transfer. Structure. 33(4), 820–827.e4.'
mla: 'Harar, Pavol, et al. “FakET: Simulating Cryo-Electron Tomograms with Neural
Style Transfer.” Structure, vol. 33, no. 4, Cell Press, 2025, p. 820–827.e4,
doi:10.1016/j.str.2025.01.020.'
short: P. Harar, L. Herrmann, P. Grohs, D. Haselbach, Structure 33 (2025) 820–827.e4.
corr_author: '1'
date_created: 2025-03-23T23:01:27Z
date_published: 2025-04-03T00:00:00Z
date_updated: 2026-10-20T08:54:10Z
day: '03'
ddc:
- '570'
department:
- _id: AlMi
doi: 10.1016/j.str.2025.01.020
external_id:
isi:
- '001463196100001'
pmid:
- '39947174'
file:
- access_level: open_access
checksum: f346bc357a66a88cca3d0eb95793fb73
content_type: application/pdf
creator: dernst
date_created: 2025-08-05T12:15:13Z
date_updated: 2025-08-05T12:15:13Z
file_id: '20130'
file_name: 2025_Structure_Harar.pdf
file_size: 4367530
relation: main_file
success: 1
file_date_updated: 2025-08-05T12:15:13Z
fulldoi: https://doi.org/10.1016/j.str.2025.01.020
has_accepted_license: '1'
intvolume: ' 33'
isi: 1
issue: '4'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '04'
oa: 1
oa_version: Published Version
page: 820-827.e4
pmid: 1
publication: Structure
publication_identifier:
eissn:
- 1878-4186
issn:
- 0969-2126
publication_status: published
publisher: Cell Press
quality_controlled: '1'
related_material:
link:
- relation: software
url: https://github.com/paloha/faket/
scopus_import: '1'
status: public
title: 'FakET: Simulating cryo-electron tomograms with neural style transfer'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 33
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '20154'
abstract:
- lang: eng
text: In long-lived mammals, including humans, brain cell homeostasis is critical
for maintaining brain function throughout life. Most neurons are generated during
development and must maintain their cellular identity and plasticity to preserve
brain function. Although extensive studies indicate the importance of recycling
and regenerating cellular molecules to maintain cellular homeostasis, recent evidence
has shown that some proteins and RNAs do not turn over for months and even years.
We propose that these long-lived cellular molecules may be the basis for maintaining
brain function in the long term, but also a potential convergent target of brain
aging. We highlight key discoveries and challenges, and propose potential directions
to unravel the mystery of brain cell longevity.
acknowledgement: The work was supported by the Deutsche Forschungsgemeinschaft (DFG,
German Research Foundation) (470322152 – T1347/3-1; 497658532 – T1347/4-1; 507965872
– T1347/5-1; and 460333672 – CRC1540 Exploring Brain Mechanics) to T.T., the Schram
Foundation (T.T.), the European Research Council (ERC-2018-STG, 804468 EAGER; ERC-2023-COG,
101125034 NEUTIME) to T.T., the Hans-Georg Geis und Xue Hong Dong-Geis Foundation
and Forschungsstiftung Medizin am Universitätsklinikum Erlangen to T.T., and the
Interdisciplinary Centre for Clinical Research Erlangen (Interdisziplinäres Zentrum
für Klinische Forschung, Universitätsklinikum Erlangen; P162 to T.T.). We thank
Dr Laura J. Harrison for editing assistance.
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Martin W
full_name: Hetzer, Martin W
id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed
last_name: Hetzer
orcid: 0000-0002-2111-992X
- first_name: Tomohisa
full_name: Toda, Tomohisa
last_name: Toda
citation:
ama: Hetzer M, Toda T. Long-lived cellular molecules in the brain. Trends in
Neurosciences. 2025;48(9):645-654. doi:10.1016/j.tins.2025.07.004
apa: Hetzer, M., & Toda, T. (2025). Long-lived cellular molecules in the brain.
Trends in Neurosciences. Cell Press. https://doi.org/10.1016/j.tins.2025.07.004
chicago: Hetzer, Martin, and Tomohisa Toda. “Long-Lived Cellular Molecules in the
Brain.” Trends in Neurosciences. Cell Press, 2025. https://doi.org/10.1016/j.tins.2025.07.004.
ieee: M. Hetzer and T. Toda, “Long-lived cellular molecules in the brain,” Trends
in Neurosciences, vol. 48, no. 9. Cell Press, pp. 645–654, 2025.
ista: Hetzer M, Toda T. 2025. Long-lived cellular molecules in the brain. Trends
in Neurosciences. 48(9), 645–654.
mla: Hetzer, Martin, and Tomohisa Toda. “Long-Lived Cellular Molecules in the Brain.”
Trends in Neurosciences, vol. 48, no. 9, Cell Press, 2025, pp. 645–54,
doi:10.1016/j.tins.2025.07.004.
short: M. Hetzer, T. Toda, Trends in Neurosciences 48 (2025) 645–654.
corr_author: '1'
date_created: 2025-08-10T22:01:29Z
date_published: 2025-09-01T00:00:00Z
date_updated: 2026-10-20T08:54:50Z
day: '01'
ddc:
- '570'
department:
- _id: MaHe
doi: 10.1016/j.tins.2025.07.004
external_id:
isi:
- '001568965400001'
pmid:
- '40744775'
file:
- access_level: open_access
checksum: 90942491b499f70b0bf48b8aec2e7387
content_type: application/pdf
creator: dernst
date_created: 2025-12-29T13:47:27Z
date_updated: 2025-12-29T13:47:27Z
file_id: '20873'
file_name: 2025_TrendsNeurosciences_Hetzer.pdf
file_size: 327847
relation: main_file
success: 1
file_date_updated: 2025-12-29T13:47:27Z
fulldoi: https://doi.org/10.1016/j.tins.2025.07.004
has_accepted_license: '1'
intvolume: ' 48'
isi: 1
issue: '9'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 645-654
pmid: 1
publication: Trends in Neurosciences
publication_identifier:
eissn:
- 1878-108X
issn:
- 0166-2236
publication_status: published
publisher: Cell Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Long-lived cellular molecules in the brain
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 48
year: '2025'
...
---
OA_type: closed access
_id: '20427'
abstract:
- lang: eng
text: Animal cells migrating up chemotactic gradients often show speed oscillations.
A new study describes a molecular circuit that switches zebrafish germ cells between
phases of straight runs, tumbling and directional reorientation.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Ziqiang
full_name: Li, Ziqiang
id: 922e68bb-1727-11ee-857c-966e8cc1b6c3
last_name: Li
- first_name: Michael K
full_name: Sixt, Michael K
id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
last_name: Sixt
orcid: 0000-0002-6620-9179
citation:
ama: 'LI Z, Sixt MK. Cell migration: How animal cells run and tumble. Current
Biology. 2025;35(18):R890-R892. doi:10.1016/j.cub.2025.08.016'
apa: 'LI, Z., & Sixt, M. K. (2025). Cell migration: How animal cells run and
tumble. Current Biology. Cell Press. https://doi.org/10.1016/j.cub.2025.08.016'
chicago: 'LI, ZIQIANG, and Michael K Sixt. “Cell Migration: How Animal Cells Run
and Tumble.” Current Biology. Cell Press, 2025. https://doi.org/10.1016/j.cub.2025.08.016.'
ieee: 'Z. LI and M. K. Sixt, “Cell migration: How animal cells run and tumble,”
Current Biology, vol. 35, no. 18. Cell Press, pp. R890–R892, 2025.'
ista: 'LI Z, Sixt MK. 2025. Cell migration: How animal cells run and tumble. Current
Biology. 35(18), R890–R892.'
mla: 'LI, ZIQIANG, and Michael K. Sixt. “Cell Migration: How Animal Cells Run and
Tumble.” Current Biology, vol. 35, no. 18, Cell Press, 2025, pp. R890–92,
doi:10.1016/j.cub.2025.08.016.'
short: Z. LI, M.K. Sixt, Current Biology 35 (2025) R890–R892.
corr_author: '1'
date_created: 2025-10-05T22:01:35Z
date_published: 2025-09-22T00:00:00Z
date_updated: 2026-10-20T08:55:09Z
day: '22'
department:
- _id: MiSi
doi: 10.1016/j.cub.2025.08.016
external_id:
isi:
- '001592664700001'
pmid:
- '40987270'
fulldoi: https://doi.org/10.1016/j.cub.2025.08.016
intvolume: ' 35'
isi: 1
issue: '18'
language:
- iso: eng
month: '09'
oa_version: None
page: R890-R892
pmid: 1
publication: Current Biology
publication_identifier:
eissn:
- 1879-0445
publication_status: published
publisher: Cell Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Cell migration: How animal cells run and tumble'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 35
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '15016'
abstract:
- lang: eng
text: Amphibians, by virtue of their phylogenetic position, provide invaluable insights
on nervous system evolution, development, and remodeling. The genetic toolkit
for amphibians, however, remains limited. Recombinant adeno-associated viral vectors
(AAVs) are a powerful alternative to transgenesis for labeling and manipulating
neurons. Although successful in mammals, AAVs have never been shown to transduce
amphibian cells efficiently. We screened AAVs in three amphibian species—the frogs
Xenopus laevis and Pelophylax bedriagae and the salamander Pleurodeles waltl—and
identified at least two AAV serotypes per species that transduce neurons. In developing
amphibians, AAVs labeled groups of neurons generated at the same time during development.
In the mature brain, AAVrg retrogradely traced long-range projections. Our study
introduces AAVs as a tool for amphibian research, establishes a generalizable
workflow for AAV screening in new species, and expands opportunities for cross-species
comparisons of nervous system development, function, and evolution.
acknowledged_ssus:
- _id: PreCl
- _id: Bio
acknowledgement: 'We thank members of the Sweeney, Tosches, Shein-Idelson, Yamaguchi,
Kelley, and Cline Labs for their contributions to this project, discussion, and
support. We additionally thank the Beckman Institute CLOVER Center and Viviana Gradinaru
(Caltech), Kimberly Ritola (UNC NeuroTools), and Flavia Gomez-Leite (ISTA Viral
Core) for AAV production and consultation; Andras Simon and Alberto Joven (Karolinska
Institute) for feedback; Elizabeth Bagnato-Cohen (Columbia) for project coordination;
our animal care and imaging facilities; the amphibian stock centers (NXR, EXRC,
and XenopusExpress); and our funding sources: NSF IOS 2110086 (D.B.K., L.B.S., M.A.T.,
A.Y., and H.T.C.); US-Israel Binational Science Foundation (BSF) 2020702 (M.S.-I.);
FTI Strategy Lower Austria Dissertation FT121-D-046 (D.V.); Horizon Europe ERC Starting
Grant 101041551 and Special Research Programme (SFB) of the Austrian Science Fund
(FWF) project F7814-B (L.B.S.); NIH grant R35GM146973, Rita Allen Foundation Award
GA_032522_FE, and CZI Ben Barres Early Career Acceleration Award 2023-331758 (M.A.T.);
EMBO Long-Term Fellowship ALTF 874-2021 (A.D.); and NSF GRFP DGE 2036197 (E.C.B.J.).'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Eliza C.B.
full_name: Jaeger, Eliza C.B.
last_name: Jaeger
- first_name: David
full_name: Vijatovic, David
id: cf391e77-ec3c-11ea-a124-d69323410b58
last_name: Vijatovic
orcid: 0000-0002-5494-0941
- first_name: Astrid
full_name: Deryckere, Astrid
last_name: Deryckere
- first_name: Nikol
full_name: Zorin, Nikol
last_name: Zorin
- first_name: Akemi L.
full_name: Nguyen, Akemi L.
last_name: Nguyen
- first_name: Georgiy
full_name: Ivanian, Georgiy
id: eaf2b366-cfd1-11ee-bbdf-c8790f800a05
last_name: Ivanian
orcid: 0009-0002-3999-3735
- first_name: Jamie
full_name: Woych, Jamie
last_name: Woych
- first_name: Rebecca C
full_name: Arnold, Rebecca C
id: d6cce458-14c9-11ed-a755-c1c8fc6fde6f
last_name: Arnold
- first_name: Alonso
full_name: Ortega Gurrola, Alonso
last_name: Ortega Gurrola
- first_name: Arik
full_name: Shvartsman, Arik
last_name: Shvartsman
- first_name: Francesca
full_name: Barbieri, Francesca
id: a9492887-8972-11ed-ae7b-bfae10998254
last_name: Barbieri
- first_name: Florina-Alexandra
full_name: Toma, Florina-Alexandra
id: 85dd99f2-15b2-11ec-abd3-d1ae4d57f3b5
last_name: Toma
- first_name: Gary J.
full_name: Gorbsky, Gary J.
last_name: Gorbsky
- first_name: Marko E.
full_name: Horb, Marko E.
last_name: Horb
- first_name: Hollis T.
full_name: Cline, Hollis T.
last_name: Cline
- first_name: Timothy F.
full_name: Shay, Timothy F.
last_name: Shay
- first_name: Darcy B.
full_name: Kelley, Darcy B.
last_name: Kelley
- first_name: Ayako
full_name: Yamaguchi, Ayako
last_name: Yamaguchi
- first_name: Mark
full_name: Shein-Idelson, Mark
last_name: Shein-Idelson
- first_name: Maria Antonietta
full_name: Tosches, Maria Antonietta
last_name: Tosches
- first_name: Lora Beatrice Jaeger
full_name: Sweeney, Lora Beatrice Jaeger
id: 56BE8254-C4F0-11E9-8E45-0B23E6697425
last_name: Sweeney
orcid: 0000-0001-9242-5601
citation:
ama: Jaeger ECB, Vijatovic D, Deryckere A, et al. Adeno-associated viral tools to
trace neural development and connectivity across amphibians. Developmental
Cell. 2025;60(5):794-812.e6. doi:10.1016/j.devcel.2024.10.025
apa: Jaeger, E. C. B., Vijatovic, D., Deryckere, A., Zorin, N., Nguyen, A. L., Ivanian,
G., … Sweeney, L. B. (2025). Adeno-associated viral tools to trace neural development
and connectivity across amphibians. Developmental Cell. Cell Press. https://doi.org/10.1016/j.devcel.2024.10.025
chicago: Jaeger, Eliza C.B., David Vijatovic, Astrid Deryckere, Nikol Zorin, Akemi
L. Nguyen, Georgiy Ivanian, Jamie Woych, et al. “Adeno-Associated Viral Tools
to Trace Neural Development and Connectivity across Amphibians.” Developmental
Cell. Cell Press, 2025. https://doi.org/10.1016/j.devcel.2024.10.025.
ieee: E. C. B. Jaeger et al., “Adeno-associated viral tools to trace neural
development and connectivity across amphibians,” Developmental Cell, vol.
60, no. 5. Cell Press, p. 794–812.e6, 2025.
ista: Jaeger ECB, Vijatovic D, Deryckere A, Zorin N, Nguyen AL, Ivanian G, Woych
J, Arnold RC, Ortega Gurrola A, Shvartsman A, Barbieri F, Toma F-A, Gorbsky GJ,
Horb ME, Cline HT, Shay TF, Kelley DB, Yamaguchi A, Shein-Idelson M, Tosches MA,
Sweeney LB. 2025. Adeno-associated viral tools to trace neural development and
connectivity across amphibians. Developmental Cell. 60(5), 794–812.e6.
mla: Jaeger, Eliza C. B., et al. “Adeno-Associated Viral Tools to Trace Neural Development
and Connectivity across Amphibians.” Developmental Cell, vol. 60, no. 5,
Cell Press, 2025, p. 794–812.e6, doi:10.1016/j.devcel.2024.10.025.
short: E.C.B. Jaeger, D. Vijatovic, A. Deryckere, N. Zorin, A.L. Nguyen, G. Ivanian,
J. Woych, R.C. Arnold, A. Ortega Gurrola, A. Shvartsman, F. Barbieri, F.-A. Toma,
G.J. Gorbsky, M.E. Horb, H.T. Cline, T.F. Shay, D.B. Kelley, A. Yamaguchi, M.
Shein-Idelson, M.A. Tosches, L.B. Sweeney, Developmental Cell 60 (2025) 794–812.e6.
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: 'FAMD RStudio code and raw data used for analysis of post-metamorphic
P. waltl injection outcomes are available via Dryad repository: https://doi.org/10.5061/dryad.mpg4f4r89.
Any additional information required to reanalyze the data reported in this paper
is available from the lead contact upon request.'
date_created: 2024-02-20T09:20:32Z
date_published: 2025-03-10T00:00:00Z
date_updated: 2026-10-20T08:56:33Z
day: '10'
ddc:
- '570'
department:
- _id: LoSw
- _id: MaDe
- _id: GaNo
doi: 10.1016/j.devcel.2024.10.025
external_id:
isi:
- '001444798600001'
pmid:
- '39603234'
file:
- access_level: open_access
checksum: a83a4cb58f5941096d3ad91ca0172594
content_type: application/pdf
creator: dernst
date_created: 2025-06-04T05:43:27Z
date_updated: 2025-06-04T05:43:27Z
file_id: '19790'
file_name: 2025_DevelopmentalCell_Jaeger.pdf
file_size: 11936258
relation: main_file
success: 1
file_date_updated: 2025-06-04T05:43:27Z
fulldoi: https://doi.org/10.1016/j.devcel.2024.10.025
has_accepted_license: '1'
intvolume: ' 60'
isi: 1
issue: '5'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 794-812.e6
pmid: 1
project:
- _id: bd73af52-d553-11ed-ba76-912049f0ac7a
grant_number: FTI21-D-046
name: Development of V1 interneuron diversity during swim-to-walk transition of
Xenopus metamorphosis
- _id: ebb66355-77a9-11ec-83b8-b8ac210a4dae
grant_number: '101041551'
name: Development and Evolution of Tetrapod Motor Circuits
- _id: 8da85f50-16d5-11f0-9cad-eab8b0ff6c9e
grant_number: F7814
name: 'Stem Cell Modulation in Neural Development and Regeneration/ P14-Swim-to-limb
transition: cell type to connection diversity'
publication: Developmental Cell
publication_identifier:
eissn:
- 1878-1551
issn:
- 1534-5807
publication_status: published
publisher: Cell Press
quality_controlled: '1'
related_material:
record:
- id: '22667'
relation: dissertation_contains
status: public
- id: '22803'
relation: research_data
status: public
researchdata_availability: yes
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Adeno-associated viral tools to trace neural development and connectivity across
amphibians
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 60
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '18619'
abstract:
- lang: eng
text: Brassinosteroids (BRs) are steroidal phytohormones indispensable for plant
growth, development, and responses to environmental stresses. The export of bioactive
BRs to the apoplast is essential for BR signalling initiation, which requires
binding of BR molecule to the extracellular domains of the plasma membrane-localized
receptor complex. We have previously shown that the Arabidopsis thaliana ATP-binding
cassette (ABC) transporter, ABCB19, functions as a BR exporter, and together with
its close homologue, ABCB1, positively regulate BR signalling. Here, we demonstrate
that ABCB1 is another BR transporter. The ATP hydrolysis activity of ABCB1 was
stimulated by bioactive BRs, and its transport activity was confirmed in proteoliposomes
and protoplasts. Structures of ABCB1 in substrate-unbound (apo), brassinolide
(BL)-bound, and ATP plus BL-bound states were determined. In the BL-bound structure,
BL was bound to the hydrophobic cavity formed by the transmembrane domain, and
triggered local conformational changes. Together, our data provide additional
insights into the ABC transporter-mediated BR export.
acknowledgement: We thank the Cryo-EM Center of the University of Science and Technology
of China for the EM facility support. We thank Yaowei Wang, Yongming Luo, and Nemanja
Vukašinović (VIB-UGhent, Belgium) for useful discussions and technical support.
L.S. is supported by an Outstanding Young Scholar Award from the Qiu Shi Science
and Technologies Foundation and a Young Scholar Award from the Cyrus Tang Foundation.
No conflict of interest is declared.
article_number: '101181'
article_processing_charge: Yes
article_type: original
author:
- first_name: H
full_name: Wei, H
last_name: Wei
- first_name: H
full_name: Zhu, H
last_name: Zhu
- first_name: W
full_name: Ying, W
last_name: Ying
- first_name: H
full_name: Janssens, H
last_name: Janssens
- first_name: M
full_name: Kvasnica, M
last_name: Kvasnica
- first_name: JM
full_name: Winne, JM
last_name: Winne
- first_name: Y
full_name: Gao, Y
last_name: Gao
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Q
full_name: Ma, Q
last_name: Ma
- first_name: S
full_name: Tan, S
last_name: Tan
- first_name: X
full_name: Liu, X
last_name: Liu
- first_name: E
full_name: Russinova, E
last_name: Russinova
- first_name: L
full_name: Sun, L
last_name: Sun
citation:
ama: Wei H, Zhu H, Ying W, et al. Structural insights into brassinosteroid export
mediated by the Arabidopsis ABC transporter ABCB1. Plant Communications.
2025;6(1). doi:10.1016/j.xplc.2024.101181
apa: Wei, H., Zhu, H., Ying, W., Janssens, H., Kvasnica, M., Winne, J., … Sun, L.
(2025). Structural insights into brassinosteroid export mediated by the Arabidopsis
ABC transporter ABCB1. Plant Communications. Cell Press. https://doi.org/10.1016/j.xplc.2024.101181
chicago: Wei, H, H Zhu, W Ying, H Janssens, M Kvasnica, JM Winne, Y Gao, et al.
“Structural Insights into Brassinosteroid Export Mediated by the Arabidopsis ABC
Transporter ABCB1.” Plant Communications. Cell Press, 2025. https://doi.org/10.1016/j.xplc.2024.101181.
ieee: H. Wei et al., “Structural insights into brassinosteroid export mediated
by the Arabidopsis ABC transporter ABCB1,” Plant Communications, vol. 6,
no. 1. Cell Press, 2025.
ista: Wei H, Zhu H, Ying W, Janssens H, Kvasnica M, Winne J, Gao Y, Friml J, Ma
Q, Tan S, Liu X, Russinova E, Sun L. 2025. Structural insights into brassinosteroid
export mediated by the Arabidopsis ABC transporter ABCB1. Plant Communications.
6(1), 101181.
mla: Wei, H., et al. “Structural Insights into Brassinosteroid Export Mediated by
the Arabidopsis ABC Transporter ABCB1.” Plant Communications, vol. 6, no.
1, 101181, Cell Press, 2025, doi:10.1016/j.xplc.2024.101181.
short: H. Wei, H. Zhu, W. Ying, H. Janssens, M. Kvasnica, J. Winne, Y. Gao, J. Friml,
Q. Ma, S. Tan, X. Liu, E. Russinova, L. Sun, Plant Communications 6 (2025).
das_tickbox: '1'
dataavailabilitystatement: The ABCB1 structures in the substrate-unbound state, BL-bound
state, and ATP plus BL-bound state have been deposited in the Protein Data Bank
under accession codes 8ZPX, 8ZPZ, and 8ZQ4, respectively. The corresponding cryo-EM
density maps have been deposited in the Electron Microscopy Data Bank under accession
codes EMD-60366, EMD-60369, and EMD-60370, respectively.
date_created: 2024-12-04T11:21:16Z
date_published: 2025-01-13T00:00:00Z
date_updated: 2026-10-20T08:56:15Z
day: '13'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1016/j.xplc.2024.101181
external_id:
isi:
- '001416757300001'
pmid:
- '39497419'
file:
- access_level: open_access
checksum: 7b0e4511e43cc0da06730c3edb7c1167
content_type: application/pdf
creator: dernst
date_created: 2025-04-16T09:02:05Z
date_updated: 2025-04-16T09:02:05Z
file_id: '19575'
file_name: 2025_PlantComm_Wei.pdf
file_size: 4443183
relation: main_file
success: 1
file_date_updated: 2025-04-16T09:02:05Z
fulldoi: https://doi.org/10.1016/j.xplc.2024.101181
has_accepted_license: '1'
intvolume: ' 6'
isi: 1
issue: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '01'
oa: 1
oa_version: Published Version
pmid: 1
publication: Plant Communications
publication_identifier:
issn:
- 2590-3462
publication_status: published
publisher: Cell Press
quality_controlled: '1'
researchdata_availability: yes
scopus_import: '1'
status: public
supplementarymaterial: yes
title: Structural insights into brassinosteroid export mediated by the Arabidopsis
ABC transporter ABCB1
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '19003'
abstract:
- lang: eng
text: 'Super-resolution methods provide far better spatial resolution than the optical
diffraction limit of about half the wavelength of light (∼200-300 nm). Nevertheless,
they have yet to attain widespread use in plants, largely due to plants’ challenging
optical properties. Expansion microscopy improves effective resolution by isotropically
increasing the physical distances between sample structures while preserving relative
spatial arrangements and clearing the sample. However, its application to plants
has been hindered by the rigid, mechanically cohesive structure of plant tissues.
Here, we report on whole-mount expansion microscopy of thale cress (Arabidopsis
thaliana) root tissues (PlantEx), achieving a four-fold resolution increase over
conventional microscopy. Our results highlight the microtubule cytoskeleton organization
and interaction between molecularly defined cellular constituents. Combining PlantEx
with stimulated emission depletion (STED) microscopy, we increase nanoscale resolution
and visualize the complex organization of subcellular organelles from intact tissues
by example of the densely packed COPI-coated vesicles associated with the Golgi
apparatus and put these into a cellular structural context. Our results show that
expansion microscopy can be applied to increase effective imaging resolution in
Arabidopsis root specimens. '
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
- _id: E-Lib
- _id: M-Shop
acknowledgement: "We gratefully acknowledge support by the Scientific Service Units
at ISTA, including the Imaging and Optics and Lab Support facilities and the mechanical
workshop and Library. We thank Philipp Velicky for STED microscope alignment.\r\nThis
project has received funding from the European Research Council under the Horizon
2020 Framework Programme (grant agreement No 742985, J.F.). It has also received
funding from the Horizon 2020 Framework Programme under the Marie Skłodowska-Curie
Grant Agreement No. 665385 (M.G.). S.T. has received funding as an ISTplus Fellow
from the Horizon 2020 Framework Programme under Marie Skłodowska-Curie grant agreement
no. 754411 and from EMBO via a Long-Term Fellowship (grant number ALTF 679-2018).
M.R.T. received funding from the Austrian Academy of Sciences with DOC fellowship
no. 26137. The project has further received funding from the Austrian Science Fund,
via grant DK W1232 (M.R.T., N.A.D., and J.G.D). W.J. received a postdoctoral fellowship
from the Human Frontier Science Program (LT000557/2018). The funders had no role
in study design, data collection and analysis, decision to publish or preparation
of the manuscript."
article_number: koaf006
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Michelle C
full_name: Gallei, Michelle C
id: 35A03822-F248-11E8-B48F-1D18A9856A87
last_name: Gallei
orcid: 0000-0003-1286-7368
- first_name: Sven M
full_name: Truckenbrodt, Sven M
id: 45812BD4-F248-11E8-B48F-1D18A9856A87
last_name: Truckenbrodt
- first_name: Caroline
full_name: Kreuzinger, Caroline
id: 382077BA-F248-11E8-B48F-1D18A9856A87
last_name: Kreuzinger
- first_name: Syamala
full_name: Inumella, Syamala
id: F8660870-D756-11E9-98C5-34DFE5697425
last_name: Inumella
orcid: 0009-0002-5890-120X
- first_name: Vitali
full_name: Vistunou, Vitali
id: 7e146587-8972-11ed-ae7b-d7a32ea86a81
last_name: Vistunou
- first_name: Christoph M
full_name: Sommer, Christoph M
id: 4DF26D8C-F248-11E8-B48F-1D18A9856A87
last_name: Sommer
orcid: 0000-0003-1216-9105
- first_name: Mojtaba
full_name: Tavakoli, Mojtaba
id: 3A0A06F4-F248-11E8-B48F-1D18A9856A87
last_name: Tavakoli
orcid: 0000-0002-7667-6854
- first_name: Nathalie
full_name: Agudelo Duenas, Nathalie
id: 40E7F008-F248-11E8-B48F-1D18A9856A87
last_name: Agudelo Duenas
- first_name: Jakob
full_name: Vorlaufer, Jakob
id: 937696FA-C996-11E9-8C7C-CF13E6697425
last_name: Vorlaufer
orcid: 0009-0000-7590-3501
- first_name: Wiebke
full_name: Jahr, Wiebke
id: 425C1CE8-F248-11E8-B48F-1D18A9856A87
last_name: Jahr
orcid: 0000-0003-0201-2315
- first_name: Marek
full_name: Randuch, Marek
id: 6ac4636d-15b2-11ec-abd3-fb8df79972ae
last_name: Randuch
- first_name: Alexander J
full_name: Johnson, Alexander J
id: 46A62C3A-F248-11E8-B48F-1D18A9856A87
last_name: Johnson
orcid: 0000-0002-2739-8843
- first_name: Eva
full_name: Benková, Eva
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Johann G
full_name: Danzl, Johann G
id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
last_name: Danzl
orcid: 0000-0001-8559-3973
citation:
ama: Gallei MC, Truckenbrodt SM, Kreuzinger C, et al. Super-resolution expansion
microscopy in plant roots. The Plant Cell. 2025;37(4). doi:10.1093/plcell/koaf006
apa: Gallei, M. C., Truckenbrodt, S. M., Kreuzinger, C., Inumella, S., Vistunou,
V., Sommer, C. M., … Danzl, J. G. (2025). Super-resolution expansion microscopy
in plant roots. The Plant Cell. Oxford University Press. https://doi.org/10.1093/plcell/koaf006
chicago: Gallei, Michelle C, Sven M Truckenbrodt, Caroline Kreuzinger, Syamala Inumella,
Vitali Vistunou, Christoph M Sommer, Mojtaba Tavakoli, et al. “Super-Resolution
Expansion Microscopy in Plant Roots.” The Plant Cell. Oxford University
Press, 2025. https://doi.org/10.1093/plcell/koaf006.
ieee: M. C. Gallei et al., “Super-resolution expansion microscopy in plant
roots,” The Plant Cell, vol. 37, no. 4. Oxford University Press, 2025.
ista: Gallei MC, Truckenbrodt SM, Kreuzinger C, Inumella S, Vistunou V, Sommer CM,
Tavakoli M, Agudelo Duenas N, Vorlaufer J, Jahr W, Randuch M, Johnson AJ, Benková
E, Friml J, Danzl JG. 2025. Super-resolution expansion microscopy in plant roots.
The Plant Cell. 37(4), koaf006.
mla: Gallei, Michelle C., et al. “Super-Resolution Expansion Microscopy in Plant
Roots.” The Plant Cell, vol. 37, no. 4, koaf006, Oxford University Press,
2025, doi:10.1093/plcell/koaf006.
short: M.C. Gallei, S.M. Truckenbrodt, C. Kreuzinger, S. Inumella, V. Vistunou,
C.M. Sommer, M. Tavakoli, N. Agudelo Duenas, J. Vorlaufer, W. Jahr, M. Randuch,
A.J. Johnson, E. Benková, J. Friml, J.G. Danzl, The Plant Cell 37 (2025).
corr_author: '1'
date_created: 2025-02-05T06:52:06Z
date_published: 2025-04-01T00:00:00Z
date_updated: 2026-10-20T09:19:12Z
day: '01'
ddc:
- '580'
department:
- _id: EvBe
- _id: JoDa
- _id: JiFr
doi: 10.1093/plcell/koaf006
ec_funded: 1
external_id:
isi:
- '001462763100001'
pmid:
- '39792900'
file:
- access_level: open_access
checksum: 9d3f8218ff37a29f29c48a7bbe831bd3
content_type: application/pdf
creator: dernst
date_created: 2025-07-31T07:03:43Z
date_updated: 2025-07-31T07:03:43Z
file_id: '20092'
file_name: 2025_PlantCell_Gallei.pdf
file_size: 53904111
relation: main_file
success: 1
file_date_updated: 2025-07-31T07:03:43Z
fulldoi: https://doi.org/10.1093/plcell/koaf006
has_accepted_license: '1'
intvolume: ' 37'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '742985'
name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '665385'
name: International IST Doctoral Program
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: 269B5B22-B435-11E9-9278-68D0E5697425
grant_number: ALTF 679-2018
name: UltraX - achieving sub-nanometer resolution in light microscopy using iterative
X10 microscopy in combination with nanobodies and STED
- _id: 6285a163-2b32-11ec-9570-8e204ca2dba5
grant_number: '26137'
name: Studying Organelle Structure and Function at Nanoscale Resolution with Expansion
Microscopy
- _id: 26AA4EF2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: W1232-B24
name: Molecular Drug Targets
publication: The Plant Cell
publication_identifier:
eissn:
- 1532-298X
issn:
- 1040-4651
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
related_material:
record:
- id: '18837'
relation: research_data
status: public
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relation: earlier_version
status: public
scopus_import: '1'
status: public
title: Super-resolution expansion microscopy in plant roots
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 37
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '20452'
abstract:
- lang: eng
text: Accurate modeling of long-range forces is critical in atomistic simulations,
as they play a central role in determining the properties of material and chemical
systems. However, standard machine learning interatomic potentials (MLIPs) often
rely on short-range approximations, limiting their applicability to systems with
significant electrostatics and dispersion forces. We recently introduced the Latent
Ewald Summation (LES) method, which captures long-range electrostatics without
explicitly learning atomic charges or charge equilibration. We benchmark LES on
diverse and challenging systems, including charged molecules, ionic liquids, electrolyte
solutions, polar dipeptides, surface adsorption, electrolyte/solid interfaces,
and solid-solid interfaces. Here we show that LES can reproduce the exact atomic
charges for classical systems with fixed charges and can infer dipole and quadrupole
moments, as well as the dipole derivative with respect to atomic positions, for
quantum mechanical systems. Moreover, LES can achieve better accuracy in energy
and force predictions compared to methods that explicitly learn from charges.
acknowledgement: We thank Chunyi Zhang for providing the TiO2(101)/NaCl+NaOH+HCl(aq)
dataset and for useful discussions. We thank Jia-Xin Zhu for providing the Pt(111)/KF(aq)
dataset. We thank Tsz Wai Ko and Jonas Finkler for useful discussions and for the
DFT-optimized Au2-MgO(001) structures. We thank Junmin Chen for discussions. D.K
and B.C. acknowledge funding from Toyota Research Institute Synthesis Advanced Research
Challenge. D.S.K. and P.Z. acknowledge funding from BIDMaP Postdoctoral Fellowship.
article_number: '8763'
article_processing_charge: Yes
article_type: original
author:
- first_name: Daniel S.
full_name: King, Daniel S.
last_name: King
- first_name: Dongjin
full_name: Kim, Dongjin
last_name: Kim
- first_name: Peichen
full_name: Zhong, Peichen
last_name: Zhong
- first_name: Bingqing
full_name: Cheng, Bingqing
id: cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9
last_name: Cheng
orcid: 0000-0002-3584-9632
citation:
ama: King DS, Kim D, Zhong P, Cheng B. Machine learning of charges and long-range
interactions from energies and forces. Nature Communications. 2025;16.
doi:10.1038/s41467-025-63852-x
apa: King, D. S., Kim, D., Zhong, P., & Cheng, B. (2025). Machine learning of
charges and long-range interactions from energies and forces. Nature Communications.
Springer Nature. https://doi.org/10.1038/s41467-025-63852-x
chicago: King, Daniel S., Dongjin Kim, Peichen Zhong, and Bingqing Cheng. “Machine
Learning of Charges and Long-Range Interactions from Energies and Forces.” Nature
Communications. Springer Nature, 2025. https://doi.org/10.1038/s41467-025-63852-x.
ieee: D. S. King, D. Kim, P. Zhong, and B. Cheng, “Machine learning of charges and
long-range interactions from energies and forces,” Nature Communications,
vol. 16. Springer Nature, 2025.
ista: King DS, Kim D, Zhong P, Cheng B. 2025. Machine learning of charges and long-range
interactions from energies and forces. Nature Communications. 16, 8763.
mla: King, Daniel S., et al. “Machine Learning of Charges and Long-Range Interactions
from Energies and Forces.” Nature Communications, vol. 16, 8763, Springer
Nature, 2025, doi:10.1038/s41467-025-63852-x.
short: D.S. King, D. Kim, P. Zhong, B. Cheng, Nature Communications 16 (2025).
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: The training sets, training scripts, MD input files, and
trained CACE potentials are available at https://github.com/BingqingCheng/cace-lr-fit;
see https://doi.org/10.5281/zenodo.16415061. Source data for all figures are provided
with this paper. Source data are provided with this paper.
date_created: 2025-10-12T22:01:25Z
date_published: 2025-10-01T00:00:00Z
date_updated: 2026-10-20T09:48:07Z
day: '01'
ddc:
- '000'
department:
- _id: BiCh
doi: 10.1038/s41467-025-63852-x
external_id:
isi:
- '001586620700015'
pmid:
- '41034200'
file:
- access_level: open_access
checksum: 34b6005d349bbff85839c4e51d6c8725
content_type: application/pdf
creator: dernst
date_created: 2025-10-13T07:54:51Z
date_updated: 2025-10-13T07:54:51Z
file_id: '20460'
file_name: 2025_NatureComm_King.pdf
file_size: 4907055
relation: main_file
success: 1
file_date_updated: 2025-10-13T07:54:51Z
fulldoi: https://doi.org/10.1038/s41467-025-63852-x
has_accepted_license: '1'
intvolume: ' 16'
isi: 1
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nature Communications
publication_identifier:
eissn:
- 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
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researchdata_availability: no
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supplementarymaterial: no
title: Machine learning of charges and long-range interactions from energies and forces
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 16
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '22770'
article_processing_charge: No
author:
- first_name: Bingqing
full_name: Cheng, Bingqing
id: cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9
last_name: Cheng
orcid: 0000-0002-3584-9632
- first_name: Daniel
full_name: King, Daniel
last_name: King
- first_name: Dongjin
full_name: Kim, Dongjin
last_name: Kim
- first_name: Peichen
full_name: Zhong, Peichen
last_name: Zhong
citation:
ama: 'Cheng B, King D, Kim D, Zhong P. BingqingCheng/cace-lr-fit: V0. 2025. doi:10.5281/zenodo.16415060'
apa: 'Cheng, B., King, D., Kim, D., & Zhong, P. (2025). BingqingCheng/cace-lr-fit:
V0. Zenodo. https://doi.org/10.5281/zenodo.16415060'
chicago: 'Cheng, Bingqing, Daniel King, Dongjin Kim, and Peichen Zhong. “BingqingCheng/Cace-Lr-Fit:
V0.” Zenodo, 2025. https://doi.org/10.5281/zenodo.16415060.'
ieee: 'B. Cheng, D. King, D. Kim, and P. Zhong, “BingqingCheng/cace-lr-fit: V0.”
Zenodo, 2025.'
ista: 'Cheng B, King D, Kim D, Zhong P. 2025. BingqingCheng/cace-lr-fit: V0, Zenodo,
10.5281/zenodo.16415060.'
mla: 'Cheng, Bingqing, et al. BingqingCheng/Cace-Lr-Fit: V0. Zenodo, 2025,
doi:10.5281/zenodo.16415060.'
short: B. Cheng, D. King, D. Kim, P. Zhong, (2025).
date_created: 2026-08-27T12:13:55Z
date_published: 2025-07-24T00:00:00Z
date_updated: 2026-10-20T09:48:08Z
day: '24'
ddc:
- '000'
department:
- _id: BiCh
doi: 10.5281/zenodo.16415060
fulldoi: https://doi.org/10.5281/zenodo.16415060
main_file_link:
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url: https://doi.org/10.5281/zenodo.16415061
month: '07'
oa: 1
oa_version: None
publisher: Zenodo
related_material:
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status: public
title: 'BingqingCheng/cace-lr-fit: V0'
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '18710'
abstract:
- lang: eng
text: We present an ab initio theoretical method to calculate the resonant Auger
spectrum in the presence of ultrafast dissociation. The method is demonstrated
by deriving the L-VV resonant Auger spectrum mediated by the 2p3/2−1σ* resonance
in HCl, where the electronic Auger decay and nuclear dissociation occur on the
same time scale. The Auger decay rates are calculated within the one-center approximation
and are shown to vary significantly with the inter-nuclear distance. A quantum-mechanical
description of dissociation is effectuated by propagating the corresponding Franck–Condon
factors. The calculated profiles of Auger spectral lines resemble those of atomic
Auger decay but here the characteristic tails extend towards lower electron kinetic
energies, which reflect specific features of the potential energy curves. The
presented method can describe the resonant Auger spectrum for an arbitrary speed
of dissociation and simplifies to known approximations in the limiting cases.
acknowledgement: This publication is based upon work from COST Action CA18212 – Molecular
Dynamics in the GAS phase (MD-GAS), supported by COST (European Cooperation in Science
and Technology). This work was financially supported by the Slovenian Research Agency
in the framework of research program P1-0112 Studies of Atoms, Molecules and Structures
by Photons and Particles. Part of this work was financed by the European Research
Council (ERC) through the Starting Grant No. 801770 (ANGULON). The authors acknowledge
P. Lablanquie, H. Iwayama, F. Penent, K. Soejima and E. Shigemasa for sharing their
unpublished experimental spectra on HCl.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Mateja
full_name: Hrast, Mateja
id: 48dbb294-2a9c-11ef-905d-f56be71f0e5d
last_name: Hrast
- first_name: Marko
full_name: Ljubotina, Marko
id: F75EE9BE-5C90-11EA-905D-16643DDC885E
last_name: Ljubotina
orcid: 0000-0003-0038-7068
- first_name: Matjaz
full_name: Zitnik, Matjaz
last_name: Zitnik
citation:
ama: Hrast M, Ljubotina M, Zitnik M. Ab initio Auger spectrum of the ultrafast dissociating
2p3/2−1σ* resonance in HCl. Physical Chemistry Chemical Physics. 2025;27(3):1473-1482.
doi:10.1039/d4cp03727h
apa: Hrast, M., Ljubotina, M., & Zitnik, M. (2025). Ab initio Auger spectrum
of the ultrafast dissociating 2p3/2−1σ* resonance in HCl. Physical Chemistry
Chemical Physics. Royal Society of Chemistry. https://doi.org/10.1039/d4cp03727h
chicago: Hrast, Mateja, Marko Ljubotina, and Matjaz Zitnik. “Ab Initio Auger Spectrum
of the Ultrafast Dissociating 2p3/2−1σ* Resonance in HCl.” Physical Chemistry
Chemical Physics. Royal Society of Chemistry, 2025. https://doi.org/10.1039/d4cp03727h.
ieee: M. Hrast, M. Ljubotina, and M. Zitnik, “Ab initio Auger spectrum of the ultrafast
dissociating 2p3/2−1σ* resonance in HCl,” Physical Chemistry Chemical Physics,
vol. 27, no. 3. Royal Society of Chemistry, pp. 1473–1482, 2025.
ista: Hrast M, Ljubotina M, Zitnik M. 2025. Ab initio Auger spectrum of the ultrafast
dissociating 2p3/2−1σ* resonance in HCl. Physical Chemistry Chemical Physics.
27(3), 1473–1482.
mla: Hrast, Mateja, et al. “Ab Initio Auger Spectrum of the Ultrafast Dissociating
2p3/2−1σ* Resonance in HCl.” Physical Chemistry Chemical Physics, vol.
27, no. 3, Royal Society of Chemistry, 2025, pp. 1473–82, doi:10.1039/d4cp03727h.
short: M. Hrast, M. Ljubotina, M. Zitnik, Physical Chemistry Chemical Physics 27
(2025) 1473–1482.
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: Data for this article, including potential energy curves,
Auger decay rates and spectral lines, are available at ZENODO at https://doi.org/10.5281/zenodo.13833475.
date_created: 2024-12-29T23:01:58Z
date_published: 2025-01-21T00:00:00Z
date_updated: 2026-10-21T07:56:55Z
day: '21'
ddc:
- '530'
department:
- _id: MiLe
- _id: MaSe
doi: 10.1039/d4cp03727h
ec_funded: 1
external_id:
isi:
- '001379819100001'
pmid:
- '39698879'
file:
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checksum: d035683179547b41b811107a8649aab0
content_type: application/pdf
creator: dernst
date_created: 2025-04-16T09:46:45Z
date_updated: 2025-04-16T09:46:45Z
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file_date_updated: 2025-04-16T09:46:45Z
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has_accepted_license: '1'
intvolume: ' 27'
isi: 1
issue: '3'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/3.0/
month: '01'
oa: 1
oa_version: Published Version
page: 1473-1482
pmid: 1
project:
- _id: 2688CF98-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '801770'
name: 'Angulon: physics and applications of a new quasiparticle'
publication: Physical Chemistry Chemical Physics
publication_identifier:
issn:
- 1463-9076
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
related_material:
record:
- id: '18716'
relation: research_data
status: public
- id: '22866'
relation: research_data
status: public
researchdata_availability: yes
scopus_import: '1'
status: public
supplementarymaterial: no
title: Ab initio Auger spectrum of the ultrafast dissociating 2p3/2−1σ* resonance
in HCl
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/3.0/legalcode
name: Creative Commons Attribution-NonCommercial 3.0 Unported (CC BY-NC 3.0)
short: CC BY-NC (3.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 27
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '17459'
abstract:
- lang: eng
text: Atopic dermatitis (AD) is the most common chronic inflammatory skin disease
worldwide. AD is a highly complex disease with different subtypes. Many elements
of AD pathophysiology have been described, but if/how they interact with each
other or which mechanisms are important in which patients is still unclear. Langerhans
cells (LCs) are antigen-presenting cells (APCs) in the epidermis. Depending on
the context, they can act either pro- or anti-inflammatory. Many different studies
have investigated LCs in the context of AD and found them to be connected to all
major mechanisms of AD pathophysiology. As APCs, LCs recruit other immune cells
and shape the immune response, especially adaptive immunity via polarization of
T cells. As sentinel cells, LCs are primary sensors of the skin microbiome and
are important for the decision of immunity versus tolerance. LCs are also involved
with the integrity of the skin barrier by influencing tight junctions. Finally,
LCs are important cells in the neuro-immune crosstalk in the skin. In this review,
we provide an overview about the many different roles of LCs in AD. Understanding
LCs might bring us closer to a more complete understanding of this highly complex
disease. Potentially, modulating LCs might offer new options for targeted therapies
for AD patients.
acknowledgement: This work was supported by the CK-CARE of the KühneFoundation, Switzerland;
the China Scholarship Counciland Shanghai Biocelline Enterprise Co. Ltd, China.
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Yi
full_name: Pan, Yi
last_name: Pan
- first_name: Mathias
full_name: Hochgerner, Mathias
last_name: Hochgerner
- first_name: Malgorzata Anna
full_name: Cichon, Malgorzata Anna
id: d63197a3-c188-11ed-9387-8d33a3f13871
last_name: Cichon
- first_name: Theresa
full_name: Benezeder, Theresa
last_name: Benezeder
- first_name: Thomas
full_name: Bieber, Thomas
last_name: Bieber
- first_name: Peter
full_name: Wolf, Peter
last_name: Wolf
citation:
ama: 'Pan Y, Hochgerner M, Cichon MA, Benezeder T, Bieber T, Wolf P. Langerhans
cells: Central players in the pathophysiology of atopic dermatitis. Journal
of the European Academy of Dermatology and Venereology. 2025;39(2):278-289.
doi:10.1111/jdv.20291'
apa: 'Pan, Y., Hochgerner, M., Cichon, M. A., Benezeder, T., Bieber, T., & Wolf,
P. (2025). Langerhans cells: Central players in the pathophysiology of atopic
dermatitis. Journal of the European Academy of Dermatology and Venereology.
Wiley. https://doi.org/10.1111/jdv.20291'
chicago: 'Pan, Yi, Mathias Hochgerner, Malgorzata Anna Cichon, Theresa Benezeder,
Thomas Bieber, and Peter Wolf. “Langerhans Cells: Central Players in the Pathophysiology
of Atopic Dermatitis.” Journal of the European Academy of Dermatology and Venereology.
Wiley, 2025. https://doi.org/10.1111/jdv.20291.'
ieee: 'Y. Pan, M. Hochgerner, M. A. Cichon, T. Benezeder, T. Bieber, and P. Wolf,
“Langerhans cells: Central players in the pathophysiology of atopic dermatitis,”
Journal of the European Academy of Dermatology and Venereology, vol. 39,
no. 2. Wiley, pp. 278–289, 2025.'
ista: 'Pan Y, Hochgerner M, Cichon MA, Benezeder T, Bieber T, Wolf P. 2025. Langerhans
cells: Central players in the pathophysiology of atopic dermatitis. Journal of
the European Academy of Dermatology and Venereology. 39(2), 278–289.'
mla: 'Pan, Yi, et al. “Langerhans Cells: Central Players in the Pathophysiology
of Atopic Dermatitis.” Journal of the European Academy of Dermatology and Venereology,
vol. 39, no. 2, Wiley, 2025, pp. 278–89, doi:10.1111/jdv.20291.'
short: Y. Pan, M. Hochgerner, M.A. Cichon, T. Benezeder, T. Bieber, P. Wolf, Journal
of the European Academy of Dermatology and Venereology 39 (2025) 278–289.
das_tickbox: '1'
dataavailabilitystatement: Data sharing not applicable to this article as no data
sets were generated or analysed during the review.
date_created: 2024-08-25T22:01:07Z
date_published: 2025-02-01T00:00:00Z
date_updated: 2026-10-21T07:59:34Z
day: '01'
ddc:
- '570'
department:
- _id: MiSi
doi: 10.1111/jdv.20291
external_id:
isi:
- '001292894900001'
pmid:
- '39157943'
file:
- access_level: open_access
checksum: 12555ddb3490daf10b8d44e334e7312e
content_type: application/pdf
creator: dernst
date_created: 2025-04-16T09:59:37Z
date_updated: 2025-04-16T09:59:37Z
file_id: '19583'
file_name: 2025_JEADV_Pan.pdf
file_size: 457698
relation: main_file
success: 1
file_date_updated: 2025-04-16T09:59:37Z
fulldoi: https://doi.org/10.1111/jdv.20291
has_accepted_license: '1'
intvolume: ' 39'
isi: 1
issue: '2'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 278-289
pmid: 1
publication: Journal of the European Academy of Dermatology and Venereology
publication_identifier:
eissn:
- 1468-3083
issn:
- 0926-9959
publication_status: published
publisher: Wiley
quality_controlled: '1'
researchdata_availability: not applicable
scopus_import: '1'
status: public
supplementarymaterial: no
title: 'Langerhans cells: Central players in the pathophysiology of atopic dermatitis'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 39
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '15121'
abstract:
- lang: eng
text: We present an auction algorithm using multiplicative instead of constant weight
updates to compute a (1-E)-approximate maximum weight matching (MWM) in a bipartite
graph with n vertices and m edges in time 0(mE-1), beating the running time of
the fastest known approximation algorithm of Duan and Pettie [JACM ’14] that runs
in 0(mE-1 log E-1). Our algorithm is very simple and it can be extended to give
a dynamic data structure that maintains a (1-E)-approximate maximum weight matching
under (1) one-sided vertex deletions (with incident edges) and (2) one-sided vertex
insertions (with incident edges sorted by weight) to the other side. The total
time time used is 0(mE-1), where m is the sum of the number of initially existing
and inserted edges.
acknowledgement: The first author thanks Chandra Chekuri for useful discussions about
this paper. This work was done in part at the University of Vienna. This project
has received funding from the European Research Council (ERC) under the European
Union’s Horizon 2020 research and innovation programme (Grant agreement No. 101019564
“The Design of Modern Fully Dynamic Data Structures (MoDynStruct)” and from the
Austrian Science Fund (FWF) project “Fast Algorithms for a Reactive Network Layer
(ReactNet)”, P 33775-N, with additional funding from the netidee SCIENCE Stiftung,
2020–2024.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Da Wei
full_name: Zheng, Da Wei
last_name: Zheng
- first_name: Monika H
full_name: Henzinger, Monika H
id: 540c9bbd-f2de-11ec-812d-d04a5be85630
last_name: Henzinger
orcid: 0000-0002-5008-6530
citation:
ama: Zheng DW, Henzinger M. Multiplicative auction algorithm for approximate maximum
weight bipartite matching. Mathematical Programming. 2025;210:881-894.
doi:10.1007/s10107-024-02066-3
apa: Zheng, D. W., & Henzinger, M. (2025). Multiplicative auction algorithm
for approximate maximum weight bipartite matching. Mathematical Programming.
Springer Nature. https://doi.org/10.1007/s10107-024-02066-3
chicago: Zheng, Da Wei, and Monika Henzinger. “Multiplicative Auction Algorithm
for Approximate Maximum Weight Bipartite Matching.” Mathematical Programming.
Springer Nature, 2025. https://doi.org/10.1007/s10107-024-02066-3.
ieee: D. W. Zheng and M. Henzinger, “Multiplicative auction algorithm for approximate
maximum weight bipartite matching,” Mathematical Programming, vol. 210.
Springer Nature, pp. 881–894, 2025.
ista: Zheng DW, Henzinger M. 2025. Multiplicative auction algorithm for approximate
maximum weight bipartite matching. Mathematical Programming. 210, 881–894.
mla: Zheng, Da Wei, and Monika Henzinger. “Multiplicative Auction Algorithm for
Approximate Maximum Weight Bipartite Matching.” Mathematical Programming,
vol. 210, Springer Nature, 2025, pp. 881–94, doi:10.1007/s10107-024-02066-3.
short: D.W. Zheng, M. Henzinger, Mathematical Programming 210 (2025) 881–894.
corr_author: '1'
das_tickbox: '0'
date_created: 2024-03-17T23:00:58Z
date_published: 2025-03-01T00:00:00Z
date_updated: 2026-10-21T08:03:01Z
day: '01'
department:
- _id: MoHe
doi: 10.1007/s10107-024-02066-3
ec_funded: 1
external_id:
arxiv:
- '2301.09217'
isi:
- '001176048100003'
fulldoi: https://doi.org/10.1007/s10107-024-02066-3
intvolume: ' 210'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2301.09217
month: '03'
oa: 1
oa_version: Preprint
page: 881-894
project:
- _id: bd9ca328-d553-11ed-ba76-dc4f890cfe62
call_identifier: H2020
grant_number: '101019564'
name: The design and evaluation of modern fully dynamic data structures
- _id: bd9e3a2e-d553-11ed-ba76-8aa684ce17fe
grant_number: P33775
name: Fast Algorithms for a Reactive Network Layer
publication: Mathematical Programming
publication_identifier:
eissn:
- 1436-4646
issn:
- 0025-5610
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
record:
- id: '13236'
relation: earlier_version
status: public
researchdata_availability: no
scopus_import: '1'
status: public
supplementarymaterial: no
title: Multiplicative auction algorithm for approximate maximum weight bipartite matching
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 210
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '17293'
abstract:
- lang: eng
text: Voltage-gated CaV2.1 (P/Q-type) Ca2+ channels play a crucial role in regulating
neurotransmitter release, thus contributing to synaptic plasticity and to processes
such as learning and memory. Despite their recognized importance in neural function,
there is limited information on their potential involvement in neurodegenerative
conditions such as Alzheimer's disease (AD). Here, we aimed to explore the impact
of AD pathology on the density and nanoscale compartmentalization of CaV2.1 channels
in the hippocampus in association with GABAB receptors. Histoblotting experiments
showed that the density of CaV2.1 channel was significantly reduced in the hippocampus
of APP/PS1 mice in a laminar-dependent manner. CaV2.1 channel was enriched in
the active zone of the axon terminals and was present at a very low density over
the surface of dendritic tree of the CA1 pyramidal cells, as shown by quantitative
SDS-digested freeze-fracture replica labelling (SDS-FRL). In APP/PS1 mice, the
density of CaV2.1 channel in the active zone was significantly reduced in the
strata radiatum and lacunosum-moleculare, while it remained unaltered in the stratum
oriens. The decline in Cav2.1 channel density was found to be associated with
a corresponding impairment in the GABAergic synaptic function, as evidenced by
electrophysiological experiments carried out in the hippocampus of APP/PS1 mice.
Remarkably, double SDS-FRL showed a co-clustering of CaV2.1 channel and GABAB1
receptor in nanodomains (~40–50 nm) in wild type mice, while in APP/PS1 mice this
nanoarchitecture was absent. Together, these findings suggest that the AD pathology-induced
reduction in CaV2.1 channel density and CaV2.1-GABAB1 de-clustering may play a
role in the synaptic transmission alterations shown in the AD hippocampus. Therefore,
uncovering these layer-dependent changes in P/Q calcium currents associated with
AD pathology can benefit the development of future strategies for AD management.
acknowledgement: "Funding sources were Spanish Ministerio de Economía y Competitividad,
Junta de Comunidades de Castilla-La Mancha (Spain), Life Science Innovation Center
at University of Fukui and German Research Foundation.\r\nGrants RTI2018-095812-B-I00
and PID2021-125875OB-I00 funded by MCIN/AEI/10.13039/501100011033 and by “ERDF A
way of making Europe” to Rafael Luján. This study was also supported by a grant
from Junta de Comunidades de Castilla-La Mancha (SBPLY/17/180501/000229 and SBPLY/21/180501/000064)
and Universidad de Castilla-La Mancha (2023-GRIN-34187) to Rafael Luján, and Life
Science Innovation Center (Research and Education Program for Life Science) at University
of Fukui and JSPS KAKENHI Grant Numbers 16H04662, 17K19446, 18H05120 to Yugo Fukazawa
and Margarita Salas fellowship from Ministerio de Universidades and Universidad
de Castilla-La Mancha to Alejandro Martín-Belmonte. German Research Foundation (DFG
FOR 2143) and BIOSS-2 to Akos Kulik."
article_number: e13279
article_processing_charge: Yes
article_type: original
author:
- first_name: Alejandro
full_name: Martín‐Belmonte, Alejandro
last_name: Martín‐Belmonte
- first_name: Carolina
full_name: Aguado, Carolina
last_name: Aguado
- first_name: Rocío
full_name: Alfaro‐Ruiz, Rocío
last_name: Alfaro‐Ruiz
- first_name: Akos
full_name: Kulik, Akos
last_name: Kulik
- first_name: Luis
full_name: de la Ossa, Luis
last_name: de la Ossa
- first_name: Ana Esther
full_name: Moreno‐Martínez, Ana Esther
last_name: Moreno‐Martínez
- first_name: Samuel
full_name: Alberquilla, Samuel
last_name: Alberquilla
- first_name: Lucía
full_name: García‐Carracedo, Lucía
last_name: García‐Carracedo
- first_name: Miriam
full_name: Fernández, Miriam
last_name: Fernández
- first_name: Ana
full_name: Fajardo‐Serrano, Ana
last_name: Fajardo‐Serrano
- first_name: Ester
full_name: Aso, Ester
last_name: Aso
- first_name: Ryuichi
full_name: Shigemoto, Ryuichi
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
- first_name: Eduardo D.
full_name: Martín, Eduardo D.
last_name: Martín
- first_name: Yugo
full_name: Fukazawa, Yugo
last_name: Fukazawa
- first_name: Francisco
full_name: Ciruela, Francisco
last_name: Ciruela
- first_name: Rafael
full_name: Luján, Rafael
last_name: Luján
citation:
ama: 'Martín‐Belmonte A, Aguado C, Alfaro‐Ruiz R, et al. Nanoarchitecture of CaV>2.1
channels and GABAB receptors in the mouse hippocampus: Impact of APP/PS1 pathology.
Brain Pathology. 2025;35(2). doi:10.1111/bpa.13279'
apa: 'Martín‐Belmonte, A., Aguado, C., Alfaro‐Ruiz, R., Kulik, A., de la Ossa, L.,
Moreno‐Martínez, A. E., … Luján, R. (2025). Nanoarchitecture of CaV>2.1 channels
and GABAB receptors in the mouse hippocampus: Impact of APP/PS1 pathology. Brain
Pathology. Wiley. https://doi.org/10.1111/bpa.13279'
chicago: 'Martín‐Belmonte, Alejandro, Carolina Aguado, Rocío Alfaro‐Ruiz, Akos Kulik,
Luis de la Ossa, Ana Esther Moreno‐Martínez, Samuel Alberquilla, et al. “Nanoarchitecture
of CaV>2.1 Channels and GABAB Receptors in the Mouse Hippocampus: Impact of
APP/PS1 Pathology.” Brain Pathology. Wiley, 2025. https://doi.org/10.1111/bpa.13279.'
ieee: 'A. Martín‐Belmonte et al., “Nanoarchitecture of CaV>2.1 channels
and GABAB receptors in the mouse hippocampus: Impact of APP/PS1 pathology,” Brain
Pathology, vol. 35, no. 2. Wiley, 2025.'
ista: 'Martín‐Belmonte A, Aguado C, Alfaro‐Ruiz R, Kulik A, de la Ossa L, Moreno‐Martínez
AE, Alberquilla S, García‐Carracedo L, Fernández M, Fajardo‐Serrano A, Aso E,
Shigemoto R, Martín ED, Fukazawa Y, Ciruela F, Luján R. 2025. Nanoarchitecture
of CaV>2.1 channels and GABAB receptors in the mouse hippocampus: Impact of
APP/PS1 pathology. Brain Pathology. 35(2), e13279.'
mla: 'Martín‐Belmonte, Alejandro, et al. “Nanoarchitecture of CaV>2.1 Channels
and GABAB Receptors in the Mouse Hippocampus: Impact of APP/PS1 Pathology.” Brain
Pathology, vol. 35, no. 2, e13279, Wiley, 2025, doi:10.1111/bpa.13279.'
short: A. Martín‐Belmonte, C. Aguado, R. Alfaro‐Ruiz, A. Kulik, L. de la Ossa, A.E.
Moreno‐Martínez, S. Alberquilla, L. García‐Carracedo, M. Fernández, A. Fajardo‐Serrano,
E. Aso, R. Shigemoto, E.D. Martín, Y. Fukazawa, F. Ciruela, R. Luján, Brain Pathology
35 (2025).
das_tickbox: '1'
dataavailabilitystatement: All data used and/or analyzed during the current study
are available from the corresponding author on reasonable request.
date_created: 2024-07-22T07:48:20Z
date_published: 2025-03-01T00:00:00Z
date_updated: 2026-10-21T08:30:00Z
day: '01'
ddc:
- '570'
department:
- _id: RySh
doi: 10.1111/bpa.13279
external_id:
isi:
- '001250034200001'
pmid:
- '38887180'
file:
- access_level: open_access
checksum: 75a172800ab2e949abb66fba97cf70f0
content_type: application/pdf
creator: dernst
date_created: 2025-04-16T09:56:08Z
date_updated: 2025-04-16T09:56:08Z
file_id: '19582'
file_name: 2025_BrainPathology_MartinBelmonte.pdf
file_size: 8767863
relation: main_file
success: 1
file_date_updated: 2025-04-16T09:56:08Z
fulldoi: https://doi.org/10.1111/bpa.13279
has_accepted_license: '1'
intvolume: ' 35'
isi: 1
issue: '2'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: Brain Pathology
publication_identifier:
eissn:
- 1750-3639
issn:
- 1015-6305
publication_status: published
publisher: Wiley
quality_controlled: '1'
researchdata_availability: upon request
scopus_import: '1'
status: public
supplementarymaterial: yes
title: 'Nanoarchitecture of CaV>2.1 channels and GABAB receptors in the mouse hippocampus:
Impact of APP/PS1 pathology'
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 35
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '17240'
abstract:
- lang: eng
text: We prove an upper bound on the energy density of the dilute spin-\(\frac {1}{2}\)
Fermi gas capturing the leading correction to the kinetic energy\(8\pi a\rho _\uparrow\rho
_\downarrow\) with an error of size smaller than\(a\rho^{2}(a^ 3\rho)^{1/3-\varepsilon}\)
for any\(\varepsilon> 0\), where a denotes the scattering length of the interaction.
The result is valid for a large class of interactions including interactions with
a hard core. A central ingredient in the proof is a rigorous version of a fermionic
cluster expansion adapted from the formal expansion of Gaudin et al. (Nucl Phys
A 176(2):237–260, 1971. https://doi.org/10.1016/0375-9474(71)90267-3).
acknowledgement: "Open access funding provided by Institute of Science and Technology
(IST Austria).\r\nWe thank Alessandro Giuliani and Robert Seiringer for helpful
discussions and Robert Seiringer for his comments on the manuscript. Financial support
by the Austrian Science Fund (FWF) through Grant https://doi.org/10.55776/I6427
(as part of the SFB/TRR 352) is gratefully acknowledged."
article_processing_charge: Yes (via OA deal)
article_type: original
author:
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full_name: Lauritsen, Asbjørn Bækgaard
id: e1a2682f-dc8d-11ea-abe3-81da9ac728f1
last_name: Lauritsen
orcid: 0000-0003-4476-2288
citation:
ama: Lauritsen AB. Almost optimal upper bound for the ground state energy of a dilute
Fermi gas via cluster expansion. Annales Henri Poincare. 2025;26:203-243.
doi:10.1007/s00023-024-01450-1
apa: Lauritsen, A. B. (2025). Almost optimal upper bound for the ground state energy
of a dilute Fermi gas via cluster expansion. Annales Henri Poincare. Springer
Nature. https://doi.org/10.1007/s00023-024-01450-1
chicago: Lauritsen, Asbjørn Bækgaard. “Almost Optimal Upper Bound for the Ground
State Energy of a Dilute Fermi Gas via Cluster Expansion.” Annales Henri Poincare.
Springer Nature, 2025. https://doi.org/10.1007/s00023-024-01450-1.
ieee: A. B. Lauritsen, “Almost optimal upper bound for the ground state energy of
a dilute Fermi gas via cluster expansion,” Annales Henri Poincare, vol.
26. Springer Nature, pp. 203–243, 2025.
ista: Lauritsen AB. 2025. Almost optimal upper bound for the ground state energy
of a dilute Fermi gas via cluster expansion. Annales Henri Poincare. 26, 203–243.
mla: Lauritsen, Asbjørn Bækgaard. “Almost Optimal Upper Bound for the Ground State
Energy of a Dilute Fermi Gas via Cluster Expansion.” Annales Henri Poincare,
vol. 26, Springer Nature, 2025, pp. 203–43, doi:10.1007/s00023-024-01450-1.
short: A.B. Lauritsen, Annales Henri Poincare 26 (2025) 203–243.
corr_author: '1'
das_tickbox: '0'
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title: Almost optimal upper bound for the ground state energy of a dilute Fermi gas
via cluster expansion
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abstract:
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text: Tribocharging, or contact electrification, is the phenomenon in which two
initially neutral materials exchange electric charge through contact and subsequent
separation. While it is widely observed in everyday life and crucial to numerous
natural processes, even the most basic aspects of tribocharging are still a mystery—what
are the charge carriers involved and what drives their exchange? This work spans
three separate projects that address different aspects of tribocharging. First,
we introduce a novel strategy combining Finite Element Method (FEM) simulations
with Kelvin Probe Force Microscopy (KPFM) to quantitatively extract surface charge
density from surface voltage maps. Second, we present a simple theoretical model
that allows for the existence of triboelectric cycles, under the assumption that
multiple charge carrying species are involved. Third, we present experimental
evidence that identical materials can spontaneously evolve into a triboelectric
series, driven by contact history. Modeling this behavior enables the replication
of experimental results with simulations, and even experimentally forcing the
appearance of a pre-designed series by manipulating contact history. Together,
the findings from these projects challenge traditional views on tribocharging,
provide new tools for probing it, and open up new avenues of research—all with
the hopes of bringing us closer to understanding this puzzling phenomenon.
acknowledged_ssus:
- _id: M-Shop
- _id: NanoFab
- _id: EM-Fac
- _id: LifeSc
- _id: ScienComp
acknowledgement: "The project in Chapter 2 has received funding from the European
Research Council (ERC) under\r\nthe European Union’s Horizon 2020 research and innovation
programme (Grant Agreement\r\nNo. 949120).\r\nThe project in Chapter 3 has received
funding from the European Research Council (ERC) under\r\nthe European Union’s Horizon
2020 research and innovation programme (Grant Agreement\r\nNo. 949120).\r\nThe project
in Chapter 4 has received financing from the European Research Council grant\r\nagreement
No. 949120 under the European Union’s Horizon 2020 research and innovation\r\nprogramme.
The Analytical Instrumentation Center of the TU Wien acknowledges support by\r\nthe
FFG project ‘ELSA’ under grant no. 884672. C.M.P. and M.O. acknowledge the state\r\nof
Lower Austria and the European Regional Development Fund under grant no. WST3-F542638/004-2021.\r\n"
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Juan Carlos A
full_name: Sobarzo Ponce, Juan Carlos A
id: 4B807D68-AE37-11E9-AC72-31CAE5697425
last_name: Sobarzo Ponce
citation:
ama: 'Sobarzo Ponce JCA. Tribocharging of identical insulators: Triboelectric series,
triboelectric cycles and surface charges. 2025. doi:10.15479/AT-ISTA-20203'
apa: 'Sobarzo Ponce, J. C. A. (2025). Tribocharging of identical insulators:
Triboelectric series, triboelectric cycles and surface charges. Institute
of Science and Technology Austria. https://doi.org/10.15479/AT-ISTA-20203'
chicago: 'Sobarzo Ponce, Juan Carlos A. “Tribocharging of Identical Insulators:
Triboelectric Series, Triboelectric Cycles and Surface Charges.” Institute of
Science and Technology Austria, 2025. https://doi.org/10.15479/AT-ISTA-20203.'
ieee: 'J. C. A. Sobarzo Ponce, “Tribocharging of identical insulators: Triboelectric
series, triboelectric cycles and surface charges,” Institute of Science and Technology
Austria, 2025.'
ista: 'Sobarzo Ponce JCA. 2025. Tribocharging of identical insulators: Triboelectric
series, triboelectric cycles and surface charges. Institute of Science and Technology
Austria.'
mla: 'Sobarzo Ponce, Juan Carlos A. Tribocharging of Identical Insulators: Triboelectric
Series, Triboelectric Cycles and Surface Charges. Institute of Science and
Technology Austria, 2025, doi:10.15479/AT-ISTA-20203.'
short: 'J.C.A. Sobarzo Ponce, Tribocharging of Identical Insulators: Triboelectric
Series, Triboelectric Cycles and Surface Charges, Institute of Science and Technology
Austria, 2025.'
corr_author: '1'
date_created: 2025-08-21T11:42:59Z
date_published: 2025-08-27T00:00:00Z
date_updated: 2026-10-21T08:38:30Z
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call_identifier: H2020
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cycles and surface charges'
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acknowledgement: "I gratefully acknowledge the support of the ISTA Graduate School
and the Scientific Service Units of\r\nISTA, whose resources made this work possible—especially
the Imaging & Optics Facility, the Lab\r\nSupport Facility, and the Miba Machine
Shop. I would like to thank two staff scientists in particular:\r\nRobert Hauschild
(Imaging & Optics Facility) and Daniel Balazs (Lab Support Facility), for their\r\nassistance
and advice. My PhD was partially funded by the Austrian Science Fund (FWF)\r\n(10.55776/P37169
and 10.55776/COE5)."
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apa: 'Mondal, S. (2025). Oxygen and sulfur redox: Conversion kinetics and phase
equilibria. Institute of Science and Technology Austria. https://doi.org/10.15479/AT-ISTA-20607'
chicago: 'Mondal, Soumyadip. “Oxygen and Sulfur Redox: Conversion Kinetics and Phase
Equilibria.” Institute of Science and Technology Austria, 2025. https://doi.org/10.15479/AT-ISTA-20607.'
ieee: 'S. Mondal, “Oxygen and sulfur redox: Conversion kinetics and phase equilibria,”
Institute of Science and Technology Austria, 2025.'
ista: 'Mondal S. 2025. Oxygen and sulfur redox: Conversion kinetics and phase equilibria.
Institute of Science and Technology Austria.'
mla: 'Mondal, Soumyadip. Oxygen and Sulfur Redox: Conversion Kinetics and Phase
Equilibria. Institute of Science and Technology Austria, 2025, doi:10.15479/AT-ISTA-20607.'
short: 'S. Mondal, Oxygen and Sulfur Redox: Conversion Kinetics and Phase Equilibria,
Institute of Science and Technology Austria, 2025.'
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supervisor:
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full_name: Freunberger, Stefan Alexander
id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
last_name: Freunberger
orcid: 0000-0003-2902-5319
title: 'Oxygen and sulfur redox: Conversion kinetics and phase equilibria'
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...
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abstract:
- lang: eng
text: Sick individuals often conceal their disease status to group members, thereby
preventing social exclusion or aggression. Here we show by behavioural, chemical,
immunological and infection load analyses that sick ant pupae instead actively
emit a chemical signal that in itself is sufficient to trigger their own destruction
by colony members. In our experiments, this altruistic disease-signalling was
performed only by worker but not queen pupae. The lack of signalling by queen
pupae did not constitute cheating behaviour, but reflected their superior immune
capabilities. Worker pupae suffered from extensive pathogen replication whereas
queen pupae were able to restrain their infection. Our data suggest the evolution
of a finely-tuned signalling system in which it is not the induction of an individual’s
immune response, but rather its failure to overcome the infection, that triggers
pupal signalling for sacrifice. This demonstrates a balanced interplay between
individual and social immunity that efficiently achieves whole-colony health.
acknowledged_ssus:
- _id: LifeSc
- _id: MassSpec
acknowledgement: We thank Joergen Eilenberg and Nicolai V. Meyling for the fungal
strain, and the ISTA Social Immunity team, Jonghyun Park and Yuko Ulrich for ant
collection. We also thank the Social Immunity team, in particular David Moreno Martínez,
Tanvi Madaan, Wilfrid Jean Louis and Jessica Kirchner, for experimental and molecular
support, as well as Friedrich Fochler for technical support with the chemical analysis,
and the ISTA Lab Support Facility, including the mass spectrometry unit, for general
and chemical laboratory support. We further thank Marco Ribezzi for advice on 13C
calculations and Ernst Pittenauer for discussion of the chemical data, Chris Pull
and Michael Sixt for project discussion, and the Social Immunity team for comments
on the manuscript. The study was funded by the European Research Council (ERC) under
the European Union’s Horizon 2020 research and innovation Programme (No. 771402;
EPIDEMICSonCHIP) to SC.
article_number: '10511'
article_processing_charge: Yes
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author:
- first_name: Erika
full_name: Dawson, Erika
id: 31B4E2D0-F248-11E8-B48F-1D18A9856A87
last_name: Dawson
- first_name: Michaela
full_name: Hönigsberger, Michaela
id: 953894f3-25bd-11ec-8556-f70a9d38ef60
last_name: Hönigsberger
- first_name: Niklas
full_name: Kampleitner, Niklas
id: 2AC57FAC-F248-11E8-B48F-1D18A9856A87
last_name: Kampleitner
- first_name: Anna V
full_name: Grasse, Anna V
id: 406F989C-F248-11E8-B48F-1D18A9856A87
last_name: Grasse
- first_name: Lukas
full_name: Lindorfer, Lukas
id: 85f0e6d3-06b3-11ec-8982-8c5049fa4455
last_name: Lindorfer
- first_name: Jennifer
full_name: Robb, Jennifer
id: 7bc2734a-e2c6-11ea-9824-a2ed5f0662a8
last_name: Robb
- first_name: Farnaz
full_name: Beikzadeh Abbasi, Farnaz
id: 0344bfb9-3feb-11ee-87e9-c27edc800bcd
last_name: Beikzadeh Abbasi
- first_name: Florian
full_name: Strahodinsky, Florian
id: 979E35EE-C996-11E9-8C7C-CF13E6697425
last_name: Strahodinsky
- first_name: Hanna
full_name: Leitner, Hanna
id: 8fc5c6f6-5903-11ec-abad-c83f046253e7
last_name: Leitner
- first_name: Harikrishnan
full_name: Rajendran, Harikrishnan
id: 876b6b34-8ff4-11ec-97c9-8d95a7aae416
last_name: Rajendran
- first_name: Thomas
full_name: Schmitt, Thomas
last_name: Schmitt
- first_name: Sylvia
full_name: Cremer, Sylvia
id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
last_name: Cremer
orcid: 0000-0002-2193-3868
citation:
ama: Dawson E, Hönigsberger M, Kampleitner N, et al. Altruistic disease signalling
in ant colonies. Nature Communications. 2025;16. doi:10.1038/s41467-025-66175-z
apa: Dawson, E., Hönigsberger, M., Kampleitner, N., Grasse, A. V., Lindorfer, L.,
Robb, J., … Cremer, S. (2025). Altruistic disease signalling in ant colonies.
Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-025-66175-z
chicago: Dawson, Erika, Michaela Hönigsberger, Niklas Kampleitner, Anna V Grasse,
Lukas Lindorfer, Jennifer Robb, Farnaz Beikzadeh, et al. “Altruistic Disease Signalling
in Ant Colonies.” Nature Communications. Springer Nature, 2025. https://doi.org/10.1038/s41467-025-66175-z.
ieee: E. Dawson et al., “Altruistic disease signalling in ant colonies,”
Nature Communications, vol. 16. Springer Nature, 2025.
ista: Dawson E, Hönigsberger M, Kampleitner N, Grasse AV, Lindorfer L, Robb J, Beikzadeh
F, Strahodinsky F, Leitner H, Rajendran H, Schmitt T, Cremer S. 2025. Altruistic
disease signalling in ant colonies. Nature Communications. 16, 10511.
mla: Dawson, Erika, et al. “Altruistic Disease Signalling in Ant Colonies.” Nature
Communications, vol. 16, 10511, Springer Nature, 2025, doi:10.1038/s41467-025-66175-z.
short: E. Dawson, M. Hönigsberger, N. Kampleitner, A.V. Grasse, L. Lindorfer, J.
Robb, F. Beikzadeh, F. Strahodinsky, H. Leitner, H. Rajendran, T. Schmitt, S.
Cremer, Nature Communications 16 (2025).
corr_author: '1'
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...
---
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abstract:
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text: 'Sick individuals often conceal their disease status to group members, thereby
preventing social exclusion or aggression. Here we show by behavioural, chemical,
immunological and infection load analyses that sick ant pupae instead actively
emit a chemical signal that in itself is sufficient to trigger their own destruction
by colony members. In our experiments, this altruistic disease-signalling was
performed only by worker but not queen pupae. The lack of signalling by queen
pupae did not constitute cheating behaviour, but reflected their superior immune
capabilities. Worker pupae suffered from extensive pathogen replication whereas
queen pupae were able to restrain their infection. Our data suggest the evolution
of a finely-tuned signalling system in which it is not the induction of an individual’s
immune response, but rather its failure to overcome the infection, that triggers
pupal signalling for sacrifice. This demonstrates a balanced interplay between
individual and social immunity that efficiently achieves whole-colony health. '
acknowledgement: 'We thank Joergen Eilenberg and Nicolai V. Meyling for the fungal
strain, and the ISTA Social Immunity team, Jonghyun Park and Yuko Ulrich for ant
collection. We also thank the Social Immunity team, in particular David Moreno Martínez,
Tanvi Madaan, Wilfrid Jean Louis and Jessica Kirchner, for experimental and molecular
support, as well as Friedrich Fochler for technical support with the chemical analysis,
and the ISTA Lab Support Facility, including the mass spectrometry unit, for general
and chemical laboratory support. We further thank Marco Ribezzi for advice on 13C
calculations and Ernst Pittenauer for discussion of the chemical data, Chris Pull
and Michael Sixt for project discussion and the Social Immunity team for comments
on the manuscript. The study was funded by the European Research Council (ERC) under
the European Union’s Horizon 2020 research and innovation Programme (No. 771402;
EPIDEMICSonCHIP) to SC. '
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orcid: 0000-0002-2193-3868
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apa: Cremer, S. (2025). Altruistic disease signalling in ant colonies. Institute
of Science and Technology Austria. https://doi.org/10.15479/AT-ISTA-20471
chicago: Cremer, Sylvia. “Altruistic Disease Signalling in Ant Colonies.” Institute
of Science and Technology Austria, 2025. https://doi.org/10.15479/AT-ISTA-20471.
ieee: S. Cremer, “Altruistic disease signalling in ant colonies.” Institute of Science
and Technology Austria, 2025.
ista: Cremer S. 2025. Altruistic disease signalling in ant colonies, Institute of
Science and Technology Austria, 10.15479/AT-ISTA-20471.
mla: Cremer, Sylvia. Altruistic Disease Signalling in Ant Colonies. Institute
of Science and Technology Austria, 2025, doi:10.15479/AT-ISTA-20471.
short: S. Cremer, (2025).
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keyword:
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- social insects
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month: '10'
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call_identifier: H2020
grant_number: '771402'
name: Epidemics in ant societies on a chip
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abstract:
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text: In this note, we prove a formula for the cancellation exponent kv,n between
division polynomials ψn and ϕn associated with a sequence {nP}n∈N of points
on an elliptic curve E defined over a discrete valuation field K. The formula
greatly generalizes the previously known special cases and treats also the case
of non-standard Kodaira types for non-perfect residue fields.
acknowledgement: Silverman, and Paul Voutier for the comments on the earlier version
of this paper. The first author acknowledges the support by Dioscuri programme initiated
by the Max Planck Society, jointly managed with the National Science Centre (Poland),
and mutually funded by the Polish Ministry of Science and Higher Education and the
German Federal Ministry of Education and Research. The second author has been supported
by MIUR (Italy) through PRIN 2017 ‘Geometric, algebraic and analytic methods in
arithmetic’ and has received funding from the European Union's Horizon 2020 research
and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
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full_name: Naskręcki, Bartosz
last_name: Naskręcki
- first_name: Matteo
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id: 7aa8f170-131e-11ed-88e1-a9efd01027cb
last_name: Verzobio
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citation:
ama: 'Naskręcki B, Verzobio M. Common valuations of division polynomials. Proceedings
of the Royal Society of Edinburgh Section A: Mathematics. 2025;155(5):1646-1660.
doi:10.1017/prm.2024.7'
apa: 'Naskręcki, B., & Verzobio, M. (2025). Common valuations of division polynomials.
Proceedings of the Royal Society of Edinburgh Section A: Mathematics. Cambridge
University Press. https://doi.org/10.1017/prm.2024.7'
chicago: 'Naskręcki, Bartosz, and Matteo Verzobio. “Common Valuations of Division
Polynomials.” Proceedings of the Royal Society of Edinburgh Section A: Mathematics.
Cambridge University Press, 2025. https://doi.org/10.1017/prm.2024.7.'
ieee: 'B. Naskręcki and M. Verzobio, “Common valuations of division polynomials,”
Proceedings of the Royal Society of Edinburgh Section A: Mathematics, vol.
155, no. 5. Cambridge University Press, pp. 1646–1660, 2025.'
ista: 'Naskręcki B, Verzobio M. 2025. Common valuations of division polynomials.
Proceedings of the Royal Society of Edinburgh Section A: Mathematics. 155(5),
1646–1660.'
mla: 'Naskręcki, Bartosz, and Matteo Verzobio. “Common Valuations of Division Polynomials.”
Proceedings of the Royal Society of Edinburgh Section A: Mathematics, vol.
155, no. 5, Cambridge University Press, 2025, pp. 1646–60, doi:10.1017/prm.2024.7.'
short: 'B. Naskręcki, M. Verzobio, Proceedings of the Royal Society of Edinburgh
Section A: Mathematics 155 (2025) 1646–1660.'
corr_author: '1'
das_tickbox: '0'
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department:
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doi: 10.1017/prm.2024.7
ec_funded: 1
external_id:
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isi:
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has_accepted_license: '1'
intvolume: ' 155'
isi: 1
issue: '5'
keyword:
- Elliptic curves
- Néron models
- division polynomials
- height functions
- discrete valuation rings
language:
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month: '10'
oa: 1
oa_version: Published Version
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project:
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call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
publication: 'Proceedings of the Royal Society of Edinburgh Section A: Mathematics'
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issn:
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publication_status: published
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supplementarymaterial: no
title: Common valuations of division polynomials
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abstract:
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text: Given a non-singular diagonal cubic hypersurface X⊂Pn−1 over Fq(t) with char(Fq)≠3,
we show that the number of rational points of height at most |P| is O(|P|3+ε)
for n=6 and O(|P|2+ε) for n=4. In fact, if n=4 and char(Fq)>3 we prove that the
number of rational points away from any rational line contained in X is bounded
by O(|P|3/2+ε). From the result in 6 variables we deduce weak approximation for
diagonal cubic hypersurfaces for n≥7 over Fq(t) when char(Fq)>3 and handle Waring's
problem for cubes in 7 variables over Fq(t) when char(Fq)≠3. Our results answer
a question of Davenport regarding the number of solutions of bounded height to
x31+x32+x33=x34+x35+x36 with xi∈Fq[t].
acknowledgement: "Open Access funding enabled and organized by Projekt DEAL.\r\nThe
authors would like to thank Tim Browning for suggesting this project. Further they
are grateful for his and Damaris Schindler’s helpful comments. We would also like
to thank Efthymios Sofos for bringing Davenport’s question to our attention and
Keith Matthews for providing us with scanned copies of the original correspondence.
Finally we would like to thank the reviewer for helpful comments."
article_processing_charge: Yes (via OA deal)
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author:
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full_name: Glas, Jakob
id: d6423cba-dc74-11ea-a0a7-ee61689ff5fb
last_name: Glas
- first_name: Leonhard
full_name: Hochfilzer, Leonhard
last_name: Hochfilzer
citation:
ama: Glas J, Hochfilzer L. On a question of Davenport and diagonal cubic forms over
Fq(t). Mathematische Annalen. 2025;391:5485-5533. doi:10.1007/s00208-024-03035-z
apa: Glas, J., & Hochfilzer, L. (2025). On a question of Davenport and diagonal
cubic forms over Fq(t). Mathematische Annalen. Springer Nature. https://doi.org/10.1007/s00208-024-03035-z
chicago: Glas, Jakob, and Leonhard Hochfilzer. “On a Question of Davenport and Diagonal
Cubic Forms over Fq(T).” Mathematische Annalen. Springer Nature, 2025.
https://doi.org/10.1007/s00208-024-03035-z.
ieee: J. Glas and L. Hochfilzer, “On a question of Davenport and diagonal cubic
forms over Fq(t),” Mathematische Annalen, vol. 391. Springer Nature, pp.
5485–5533, 2025.
ista: Glas J, Hochfilzer L. 2025. On a question of Davenport and diagonal cubic
forms over Fq(t). Mathematische Annalen. 391, 5485–5533.
mla: Glas, Jakob, and Leonhard Hochfilzer. “On a Question of Davenport and Diagonal
Cubic Forms over Fq(T).” Mathematische Annalen, vol. 391, Springer Nature,
2025, pp. 5485–533, doi:10.1007/s00208-024-03035-z.
short: J. Glas, L. Hochfilzer, Mathematische Annalen 391 (2025) 5485–5533.
corr_author: '1'
das_tickbox: '1'
dataavailabilitystatement: "Data sharing is not applicable to this article as no datasets
were generated or analysed\r\nduring the current study."
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date_published: 2025-04-01T00:00:00Z
date_updated: 2026-10-21T11:06:30Z
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abstract:
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text: Contract-based design is a promising methodology for taming the complexity
of developing sophisticated systems. A formal contract distinguishes between assumptions,
which are constraints that the designer of a component puts on the environments
in which the component can be used safely, and guarantees, which are promises
that the designer asks from the team that implements the component. A theory of
formal contracts can be formalized as an interface theory, which supports the
composition and refinement of both assumptions and guarantees. Although there
is a rich landscape of contract-based design methods that address functional and
extra-functional properties, we present the first interface theory designed to
ensure system-wide security properties. Our framework provides a refinement relation
and a composition operation that support both incremental design and independent
implementability. We develop our theory for both stateless and stateful interfaces.
Additionally, we introduce information-flow contracts where assumptions and guarantees
are sets of flow relations. We use these contracts to illustrate how to enrich
information-flow interfaces with a semantic view. We illustrate the applicability
of our framework with two examples inspired by the automotive domain.
acknowledgement: This project has received funding from the European Union’s Horizon
2020 research and innovation programme under grant agreement No 956123 and it was
funded in part by the Austrian Science Fund (FWF) project W1255-N23, by the Austrian
FWF project ZK-35, by the FWF project SpyCoDe 10.55776/F85 and by the ERC-2020-AdG
101020093. This paper extends the text and the results of the manuscript published
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author:
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full_name: Bartocci, Ezio
last_name: Bartocci
- first_name: Thomas
full_name: Ferrere, Thomas
id: 40960E6E-F248-11E8-B48F-1D18A9856A87
last_name: Ferrere
orcid: 0000-0001-5199-3143
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000-0002-2985-7724
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full_name: Nickovic, Dejan
id: 41BCEE5C-F248-11E8-B48F-1D18A9856A87
last_name: Nickovic
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full_name: Oliveira da Costa, Ana
id: f347ec37-6676-11ee-b395-a888cb7b4fb4
last_name: Oliveira da Costa
orcid: 0000-0002-8741-5799
citation:
ama: Bartocci E, Ferrere T, Henzinger TA, Nickovic D, Oliveira da Costa A. Information-flow
interfaces. Formal Methods in System Design. 2025;66:3-48. doi:10.1007/s10703-024-00447-0
apa: Bartocci, E., Ferrere, T., Henzinger, T. A., Nickovic, D., & Oliveira da
Costa, A. (2025). Information-flow interfaces. Formal Methods in System Design.
Springer Nature. https://doi.org/10.1007/s10703-024-00447-0
chicago: Bartocci, Ezio, Thomas Ferrere, Thomas A Henzinger, Dejan Nickovic, and
Ana Oliveira da Costa. “Information-Flow Interfaces.” Formal Methods in System
Design. Springer Nature, 2025. https://doi.org/10.1007/s10703-024-00447-0.
ieee: E. Bartocci, T. Ferrere, T. A. Henzinger, D. Nickovic, and A. Oliveira da
Costa, “Information-flow interfaces,” Formal Methods in System Design,
vol. 66. Springer Nature, pp. 3–48, 2025.
ista: Bartocci E, Ferrere T, Henzinger TA, Nickovic D, Oliveira da Costa A. 2025.
Information-flow interfaces. Formal Methods in System Design. 66, 3–48.
mla: Bartocci, Ezio, et al. “Information-Flow Interfaces.” Formal Methods in
System Design, vol. 66, Springer Nature, 2025, pp. 3–48, doi:10.1007/s10703-024-00447-0.
short: E. Bartocci, T. Ferrere, T.A. Henzinger, D. Nickovic, A. Oliveira da Costa,
Formal Methods in System Design 66 (2025) 3–48.
corr_author: '1'
das_tickbox: '1'
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date_published: 2025-05-01T00:00:00Z
date_updated: 2026-10-21T12:02:29Z
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ddc:
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department:
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doi: 10.1007/s10703-024-00447-0
ec_funded: 1
external_id:
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isi:
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