---
_id: '17101'
abstract:
- lang: eng
text: "This paper considers a class of two-player zero-sum games on directed graphs
whose vertices are equipped with random payoffs of bounded support known by both
players.\r\nStarting from a fixed vertex, players take turns to move a token along
the edges of the graph.\r\nOn the one hand, for acyclic directed graphs of bounded
degree and sub-exponential expansion, we show that the value of the game converges
almost surely to a constant at an exponential rate dominated in terms of the expansion.\r\nOn
the other hand, for the infinite d-ary tree that does not fall into the previous
class of graphs, we show convergence at a double-exponential rate in terms of
the expansion."
acknowledgement: "This work was supported by the French Agence Nationale de la Recherche
(ANR) under references ANR-21-CE40-0020 (CONVERGENCE project) and ANR-20-CE40-0002
(GrHyDy), and by Fondecyt grant 1220174. This collaboration was mainly conducted
during a 1-year visit of Bruno Ziliotto to the Center for Mathematical Modeling
(CMM) at University of Chile in 2023,\r\nunder the IRL program of CNRS."
article_number: '2401.16252'
article_processing_charge: No
arxiv: 1
author:
- first_name: Luc
full_name: Attia, Luc
last_name: Attia
- first_name: Lyuben
full_name: Lichev, Lyuben
last_name: Lichev
- first_name: Dieter
full_name: Mitsche, Dieter
last_name: Mitsche
- first_name: Raimundo J
full_name: Saona Urmeneta, Raimundo J
id: BD1DF4C4-D767-11E9-B658-BC13E6697425
last_name: Saona Urmeneta
orcid: 0000-0001-5103-038X
- first_name: Bruno
full_name: Ziliotto, Bruno
last_name: Ziliotto
citation:
ama: Attia L, Lichev L, Mitsche D, Saona Urmeneta RJ, Ziliotto B. Zero-sum random
games on directed graphs. arXiv. doi:10.48550/arXiv.2401.16252
apa: Attia, L., Lichev, L., Mitsche, D., Saona Urmeneta, R. J., & Ziliotto,
B. (n.d.). Zero-sum random games on directed graphs. arXiv. https://doi.org/10.48550/arXiv.2401.16252
chicago: Attia, Luc, Lyuben Lichev, Dieter Mitsche, Raimundo J Saona Urmeneta, and
Bruno Ziliotto. “Zero-Sum Random Games on Directed Graphs.” ArXiv, n.d.
https://doi.org/10.48550/arXiv.2401.16252.
ieee: L. Attia, L. Lichev, D. Mitsche, R. J. Saona Urmeneta, and B. Ziliotto, “Zero-sum
random games on directed graphs,” arXiv. .
ista: Attia L, Lichev L, Mitsche D, Saona Urmeneta RJ, Ziliotto B. Zero-sum random
games on directed graphs. arXiv, 2401.16252.
mla: Attia, Luc, et al. “Zero-Sum Random Games on Directed Graphs.” ArXiv,
2401.16252, doi:10.48550/arXiv.2401.16252.
short: L. Attia, L. Lichev, D. Mitsche, R.J. Saona Urmeneta, B. Ziliotto, ArXiv
(n.d.).
date_created: 2024-06-03T07:45:22Z
date_published: 2024-01-29T00:00:00Z
date_updated: 2024-06-03T07:50:29Z
day: '29'
department:
- _id: KrCh
doi: 10.48550/arXiv.2401.16252
external_id:
arxiv:
- '2401.16252'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2401.16252
month: '01'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: submitted
status: public
title: Zero-sum random games on directed graphs
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
DOAJ_listed: '1'
_id: '17103'
abstract:
- lang: eng
text: Phytoalexin sakuranetin functions in resistance against rice blast. However,
the mechanisms underlying the effects of sakuranetin remains elusive. Here, we
report that rice lines expressing resistance (R) genes were found to contain high
levels of sakuranetin, which correlates with attenuated endocytic trafficking
of plasma membrane (PM) proteins. Exogenous and endogenous sakuranetin attenuates
the endocytosis of various PM proteins and the fungal effector PWL2. Moreover,
accumulation of the avirulence protein AvrCO39, resulting from uptake into rice
cells by Magnaporthe oryzae, was reduced following treatment with sakuranetin.
Pharmacological manipulation of clathrin-mediated endocytic (CME) suggests that
this pathway is targeted by sakuranetin. Indeed, attenuation of CME by sakuranetin
is sufficient to convey resistance against rice blast. Our data reveals a mechanism
of rice against M. oryzae by increasing sakuranetin levels and repressing the
CME of pathogen effectors, which is distinct from the action of many R genes that
mainly function by modulating transcription.
acknowledgement: We thank Professor Jianqiang Wu (Kunming Institute of Botany, Chinese
Academy of Sciences) for his generous support with the sakuranetin measurement.
We thank International Rice Research Institute (IRRI) for provision of the rice
NILs. We thank Professor Zhongkai Zhang (Yunnan Academy of Agricultural Sciences)
for his generous support with subcellular structure observation of rice roots. We
thank Professor Barbara Valent (Kansas State University) for her generously provision
of the plasmid containing the PWL2 gene. We thank Professor Zuhua He (Chinese Academy
of Sciences) for the gift of the transgenic rice line expressing the Pigm gene,
OsNPR1-RNAi mutant line and ROD1-overexpression rice line. We thank Professor Yinong
Yang (The Pennsylvania State University) for provision of the rice line NahG. We
thank Professor Muyuan Zhu (Zhejiang University) for provision of the transgenic
plants overexpressing miR393a. We thank Professor Zhengge Zhu (Hebei Normal University)
for provision of the rice line overexpressing OsPIN3t-GFP. We thank Professor Yanhua
Qi (Zhejiang University) for provision of the arf12 mutant line. Thanks also go
to Professor Jean-Benoit Morel (Plant Health Institute of Montpellier) for provision
of the fungus M. oryzae strain Guy11 (AvrCo39-mRFP). This work was supported by
grants from the National Natural Science Foundation of China (Grant Nos. 32260085,
31460453, 31660501, 31860064, 31760500 and 31901870), the Major Special Program
for Scientific Research, Education Department of Yunnan Province (Grant No. ZD2015005).
The project was also sponsored by SRF for ROCS, SEM (Grant No. [2013] 1792), the
Key Projects of Applied Basic Research Plan of Yunnan Province (Grant No. 2017FA018,
202301AS070082), the Major Science and Technology Project in Yunnan Province (202102AE090042,
202202AE090036 and 202102AE090017), the Young and Middle-Aged Academic and Technical
Leaders Reserve Talent Program in Yunnan Province (202205AC160076), the China Postdoctoral
Science Foundation (2019M653849XB) and the National Key Research and Development
Program of China (2023YFE0107500).
article_number: '3437'
article_processing_charge: Yes
article_type: original
author:
- first_name: Lihui
full_name: Jiang, Lihui
last_name: Jiang
- first_name: Xiaoyan
full_name: Zhang, Xiaoyan
last_name: Zhang
- first_name: Yiting
full_name: Zhao, Yiting
last_name: Zhao
- first_name: Haiyan
full_name: Zhu, Haiyan
last_name: Zhu
- first_name: Qijing
full_name: Fu, Qijing
last_name: Fu
- first_name: Xinqi
full_name: Lu, Xinqi
last_name: Lu
- first_name: Wuying
full_name: Huang, Wuying
last_name: Huang
- first_name: Xinyue
full_name: Yang, Xinyue
last_name: Yang
- first_name: Xuan
full_name: Zhou, Xuan
last_name: Zhou
- first_name: Lixia
full_name: Wu, Lixia
last_name: Wu
- first_name: Ao
full_name: Yang, Ao
last_name: Yang
- first_name: Xie
full_name: He, Xie
last_name: He
- first_name: Man
full_name: Dong, Man
last_name: Dong
- first_name: Ziai
full_name: Peng, Ziai
last_name: Peng
- first_name: Jing
full_name: Yang, Jing
last_name: Yang
- first_name: Liwei
full_name: Guo, Liwei
last_name: Guo
- first_name: Jiancheng
full_name: Wen, Jiancheng
last_name: Wen
- first_name: Huichuan
full_name: Huang, Huichuan
last_name: Huang
- first_name: Yong
full_name: Xie, Yong
last_name: Xie
- first_name: Shusheng
full_name: Zhu, Shusheng
last_name: Zhu
- first_name: Chengyun
full_name: Li, Chengyun
last_name: Li
- first_name: Xiahong
full_name: He, Xiahong
last_name: He
- first_name: Youyong
full_name: Zhu, Youyong
last_name: Zhu
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Yunlong
full_name: Du, Yunlong
last_name: Du
citation:
ama: Jiang L, Zhang X, Zhao Y, et al. Phytoalexin sakuranetin attenuates endocytosis
and enhances resistance to rice blast. Nature Communications. 2024;15.
doi:10.1038/s41467-024-47746-y
apa: Jiang, L., Zhang, X., Zhao, Y., Zhu, H., Fu, Q., Lu, X., … Du, Y. (2024). Phytoalexin
sakuranetin attenuates endocytosis and enhances resistance to rice blast. Nature
Communications. Springer Nature. https://doi.org/10.1038/s41467-024-47746-y
chicago: Jiang, Lihui, Xiaoyan Zhang, Yiting Zhao, Haiyan Zhu, Qijing Fu, Xinqi
Lu, Wuying Huang, et al. “Phytoalexin Sakuranetin Attenuates Endocytosis and Enhances
Resistance to Rice Blast.” Nature Communications. Springer Nature, 2024.
https://doi.org/10.1038/s41467-024-47746-y.
ieee: L. Jiang et al., “Phytoalexin sakuranetin attenuates endocytosis and
enhances resistance to rice blast,” Nature Communications, vol. 15. Springer
Nature, 2024.
ista: Jiang L, Zhang X, Zhao Y, Zhu H, Fu Q, Lu X, Huang W, Yang X, Zhou X, Wu L,
Yang A, He X, Dong M, Peng Z, Yang J, Guo L, Wen J, Huang H, Xie Y, Zhu S, Li
C, He X, Zhu Y, Friml J, Du Y. 2024. Phytoalexin sakuranetin attenuates endocytosis
and enhances resistance to rice blast. Nature Communications. 15, 3437.
mla: Jiang, Lihui, et al. “Phytoalexin Sakuranetin Attenuates Endocytosis and Enhances
Resistance to Rice Blast.” Nature Communications, vol. 15, 3437, Springer
Nature, 2024, doi:10.1038/s41467-024-47746-y.
short: L. Jiang, X. Zhang, Y. Zhao, H. Zhu, Q. Fu, X. Lu, W. Huang, X. Yang, X.
Zhou, L. Wu, A. Yang, X. He, M. Dong, Z. Peng, J. Yang, L. Guo, J. Wen, H. Huang,
Y. Xie, S. Zhu, C. Li, X. He, Y. Zhu, J. Friml, Y. Du, Nature Communications 15
(2024).
date_created: 2024-06-03T08:54:50Z
date_published: 2024-04-23T00:00:00Z
date_updated: 2025-09-08T07:46:24Z
day: '23'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1038/s41467-024-47746-y
external_id:
isi:
- '001207290500013'
pmid:
- '38653755'
file:
- access_level: open_access
checksum: 80cb2f2c538e81064f4836b54bc313ca
content_type: application/pdf
creator: dernst
date_created: 2024-06-03T12:05:10Z
date_updated: 2024-06-03T12:05:10Z
file_id: '17110'
file_name: 2024_NatureComm_Jiang.pdf
file_size: 8013695
relation: main_file
success: 1
file_date_updated: 2024-06-03T12:05:10Z
has_accepted_license: '1'
intvolume: ' 15'
isi: 1
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nature Communications
publication_identifier:
eissn:
- 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Phytoalexin sakuranetin attenuates endocytosis and enhances resistance to rice
blast
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 15
year: '2024'
...
---
_id: '17104'
abstract:
- lang: eng
text: 'The homeostasis of epithelial tissue relies on a balance between the self-renewal
of stem cell populations, cellular differentiation, and loss. Although this balance
needs to be tightly regulated to avoid pathologies, such as tumor growth, the
regulatory mechanisms, both cell-intrinsic and collective, which ensure tissue
steady-state are still poorly understood. Here, we develop a computational model
that incorporates basic assumptions of stem cell renewal into distinct populations
and mechanical interactions between cells. We find that the model generates unexpected
dynamic features: stem cells repel each other in the bulk tissue and are thus
found rather isolated, as in a number of in vivo contexts. By mapping the system
onto a gas of passive Brownian particles with effective repulsive interactions,
that arise from the generated flows of differentiated cells, we show that we can
quantitatively describe such stem cell distribution in tissues. The interaction
potential between a pair of stem cells decays exponentially with a characteristic
length that spans several cell sizes, corresponding to the volume of cells generated
per stem cell division. Our findings may help understanding the dynamics of normal
and cancerous epithelial tissues.'
acknowledgement: JE and JK gratefully acknowledge financial support from the Initiative
and Networking Fund (IVF) via the grant number ERC-RA-004. Simulations were performed
with computing resources granted by RWTH Aachen University under project ‘rwth0475’.
article_number: '097'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Johannes C.
full_name: Krämer, Johannes C.
last_name: Krämer
- first_name: Edouard B
full_name: Hannezo, Edouard B
id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
last_name: Hannezo
orcid: 0000-0001-6005-1561
- first_name: Gerhard
full_name: Gompper, Gerhard
last_name: Gompper
- first_name: Jens
full_name: Elgeti, Jens
last_name: Elgeti
citation:
ama: Krämer JC, Hannezo EB, Gompper G, Elgeti J. Mechanically-driven stem cell separation
in tissues caused by proliferating daughter cells. SciPost Physics. 2024;16(4).
doi:10.21468/scipostphys.16.4.097
apa: Krämer, J. C., Hannezo, E. B., Gompper, G., & Elgeti, J. (2024). Mechanically-driven
stem cell separation in tissues caused by proliferating daughter cells. SciPost
Physics. SciPost Foundation. https://doi.org/10.21468/scipostphys.16.4.097
chicago: Krämer, Johannes C., Edouard B Hannezo, Gerhard Gompper, and Jens Elgeti.
“Mechanically-Driven Stem Cell Separation in Tissues Caused by Proliferating Daughter
Cells.” SciPost Physics. SciPost Foundation, 2024. https://doi.org/10.21468/scipostphys.16.4.097.
ieee: J. C. Krämer, E. B. Hannezo, G. Gompper, and J. Elgeti, “Mechanically-driven
stem cell separation in tissues caused by proliferating daughter cells,” SciPost
Physics, vol. 16, no. 4. SciPost Foundation, 2024.
ista: Krämer JC, Hannezo EB, Gompper G, Elgeti J. 2024. Mechanically-driven stem
cell separation in tissues caused by proliferating daughter cells. SciPost Physics.
16(4), 097.
mla: Krämer, Johannes C., et al. “Mechanically-Driven Stem Cell Separation in Tissues
Caused by Proliferating Daughter Cells.” SciPost Physics, vol. 16, no.
4, 097, SciPost Foundation, 2024, doi:10.21468/scipostphys.16.4.097.
short: J.C. Krämer, E.B. Hannezo, G. Gompper, J. Elgeti, SciPost Physics 16 (2024).
date_created: 2024-06-03T08:58:44Z
date_published: 2024-04-08T00:00:00Z
date_updated: 2025-09-08T07:45:40Z
day: '08'
ddc:
- '530'
department:
- _id: EdHa
doi: 10.21468/scipostphys.16.4.097
external_id:
arxiv:
- '2310.04272'
isi:
- '001202370200001'
file:
- access_level: open_access
checksum: 6fdeecd21c166db8dedb927ecc2e6025
content_type: application/pdf
creator: dernst
date_created: 2024-06-03T11:18:51Z
date_updated: 2024-06-03T11:18:51Z
file_id: '17109'
file_name: 2024_SciPostPhys_Kraemer.pdf
file_size: 4973291
relation: main_file
success: 1
file_date_updated: 2024-06-03T11:18:51Z
has_accepted_license: '1'
intvolume: ' 16'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
publication: SciPost Physics
publication_identifier:
issn:
- 2542-4653
publication_status: published
publisher: SciPost Foundation
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mechanically-driven stem cell separation in tissues caused by proliferating
daughter cells
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 16
year: '2024'
...
---
_id: '17105'
abstract:
- lang: eng
text: The development of photoresponsive systems with non-invasive orthogonal control
by distinct wavelengths of light is still in its infancy. In particular, the design
of photochemically triggered-orthogonal systems integrated into solid materials
that enable multiple dynamic control over their properties remains a longstanding
challenge. Here, we report the orthogonal and reversible control of two types
of photoswitches in an integrated solid porous framework, that is, visible-light
responsive o-fluoroazobenzene and nitro-spiropyran motifs. The properties of the
constructed material can be selectively controlled by different wavelengths of
light thus generating four distinct states providing a basis for dynamic multifunctional
materials. Solid-state NMR spectroscopy demonstrated the selective transformation
of the azobenzene switch in the bulk, which in turn modulates N2 and CO2 adsorption.
acknowledgement: 'This work was supported from the following sources: China Scholarship
Council (CSC PhD Fellowship No. 201808330459 to J.S.), the Ministry of Education,
Culture and Science of the Netherlands (Gravitation Program No. 024.001.035 to BLF),
Financial support from The Netherlands Organization for Scientific Research (NWO-CW),
the European Research Council (ERC; advanced Grant No. 694345 to B.L.F.). PRIN (SHERPA
2020 No. H45F21003430001) and PRIN (HySTAR 2022 No. H53D23004720006) and Lombardy
Region for “Enhancing Photosynthesis” grant (2021-2023 No. H45F21002830007). W.D.
is grateful for financial support from Marie Skłodowska-Curie Actions (Individual
Fellowship No. 101027639). P.C. is grateful for the financial support provided by
the PRELUDIUM grant from the National Science Center Poland (Reg. No: 2023/49/N/ST5/01864).'
article_number: e202404878
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Jinyu
full_name: Sheng, Jinyu
id: 639f0526-27c9-11ee-95a6-966cd7f102d8
last_name: Sheng
- first_name: Jacopo
full_name: Perego, Jacopo
last_name: Perego
- first_name: Silvia
full_name: Bracco, Silvia
last_name: Bracco
- first_name: Piotr
full_name: Cieciórski, Piotr
last_name: Cieciórski
- first_name: Wojciech
full_name: Danowski, Wojciech
last_name: Danowski
- first_name: Angiolina
full_name: Comotti, Angiolina
last_name: Comotti
- first_name: Ben L.
full_name: Feringa, Ben L.
last_name: Feringa
citation:
ama: Sheng J, Perego J, Bracco S, et al. Orthogonal photoswitching in a porous organic
framework. Angewandte Chemie International Edition. 2024;63(23). doi:10.1002/anie.202404878
apa: Sheng, J., Perego, J., Bracco, S., Cieciórski, P., Danowski, W., Comotti, A.,
& Feringa, B. L. (2024). Orthogonal photoswitching in a porous organic framework.
Angewandte Chemie International Edition. Wiley. https://doi.org/10.1002/anie.202404878
chicago: Sheng, Jinyu, Jacopo Perego, Silvia Bracco, Piotr Cieciórski, Wojciech
Danowski, Angiolina Comotti, and Ben L. Feringa. “Orthogonal Photoswitching in
a Porous Organic Framework.” Angewandte Chemie International Edition. Wiley,
2024. https://doi.org/10.1002/anie.202404878.
ieee: J. Sheng et al., “Orthogonal photoswitching in a porous organic framework,”
Angewandte Chemie International Edition, vol. 63, no. 23. Wiley, 2024.
ista: Sheng J, Perego J, Bracco S, Cieciórski P, Danowski W, Comotti A, Feringa
BL. 2024. Orthogonal photoswitching in a porous organic framework. Angewandte
Chemie International Edition. 63(23), e202404878.
mla: Sheng, Jinyu, et al. “Orthogonal Photoswitching in a Porous Organic Framework.”
Angewandte Chemie International Edition, vol. 63, no. 23, e202404878, Wiley,
2024, doi:10.1002/anie.202404878.
short: J. Sheng, J. Perego, S. Bracco, P. Cieciórski, W. Danowski, A. Comotti, B.L.
Feringa, Angewandte Chemie International Edition 63 (2024).
date_created: 2024-06-03T09:00:01Z
date_published: 2024-03-26T00:00:00Z
date_updated: 2025-04-23T07:48:28Z
day: '26'
ddc:
- '540'
department:
- _id: RaKl
doi: 10.1002/anie.202404878
external_id:
pmid:
- '38530132'
file:
- access_level: open_access
checksum: 7ecb0892051f6ed8f6a6f25baa47543a
content_type: application/pdf
creator: dernst
date_created: 2024-06-03T10:33:17Z
date_updated: 2024-06-03T10:33:17Z
file_id: '17107'
file_name: 2024_AngChemieInt_Sheng.pdf
file_size: 2363206
relation: main_file
success: 1
file_date_updated: 2024-06-03T10:33:17Z
has_accepted_license: '1'
intvolume: ' 63'
issue: '23'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: Angewandte Chemie International Edition
publication_identifier:
eissn:
- 1521-3773
issn:
- 1433-7851
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Orthogonal photoswitching in a porous organic framework
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 63
year: '2024'
...
---
_id: '17122'
abstract:
- lang: eng
text: "Background: Motor alterations and lowered physical activity are common in
affective disorders. Previous research has indicated a link between depressive
symptoms and declining muscle strength primarily focusing on the elderly but not
younger individuals. Thus, we aimed to evaluate the relationship between mood
and muscle strength in a sample of N = 73 young to middle-aged hospitalized patients
(18–49 years, mean age 30.7 years) diagnosed with major depressive, bipolar and
schizoaffective disorder, with a focus on moderating effects of psychopharmacotherapy.
The study was carried out as a prospective observational study at a German psychiatric
university hospital between September 2021 and March 2022.\r\nMethods: Employing
a standardized strength circuit consisting of computerized strength training devices,
we measured the maximal muscle strength (Fmax) using three repetitions maximum
across four muscle regions (abdomen, arm, back, leg) at three time points (t1-t3)
over four weeks accompanied by psychometric testing (MADRS, BPRS, YRMS) and blood
lipid profiling in a clinical setting. For analysis of psychopharmacotherapy,
medication was split into activating (AM) and inhibiting (IM) medication and dosages
were normalized by the respective WHO defined daily dose.\r\nResults: While we
observed a significant decrease of the MADRS score and increase of the relative
total Fmax (rTFmax) in the first two weeks (t1-t2) but not later (both p < .001),
we did not reveal a significant bivariate correlation between disease severity
(MADRS) and muscle strength (rTFmax) at any of the timepoints. Individuals with
longer disease history displayed reduced rTFmax (p = .048). IM was significantly
associated with decreased rTFmax (p = .032). Regression models provide a more
substantial effect of gender, age, and IM on muscle strength than the depressive
episode itself (p < .001).\r\nConclusions: The results of the study indicate that
disease severity and muscle strength are not associated in young to middle-aged
inpatients with affective disorders using a strength circuit as observational
measurement. Future research will be needed to differentiate the effect of medication,
gender, and age on muscle strength and to develop interventions for prevention
of muscle weakness, especially in younger patients with chronic affective illnesses."
acknowledgement: "This work was supported by the project ‘Fellows Ride’ of the Thomas
Lurz und Dieter Schneider Stiftung and by the ‘Würzburger Bündnis gegen Depression’
(to S.K.-S).\r\nOpen Access funding enabled and organized by Projekt DEAL."
article_number: '401'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Hannah
full_name: Ramming, Hannah
last_name: Ramming
- first_name: Linda
full_name: Theuerkauf, Linda
last_name: Theuerkauf
- first_name: Olaf
full_name: Hoos, Olaf
last_name: Hoos
- first_name: Katharina
full_name: Lichter, Katharina
id: 39302e62-fcfc-11ec-8196-8b01447dbd3d
last_name: Lichter
orcid: 0000-0002-1485-0351
- first_name: Sarah
full_name: Kittel-Schneider, Sarah
last_name: Kittel-Schneider
citation:
ama: Ramming H, Theuerkauf L, Hoos O, Lichter K, Kittel-Schneider S. The association
between maximal muscle strength, disease severity and psychopharmacotherapy among
young to middle-aged inpatients with affective disorders – a prospective pilot
study. BMC Psychiatry. 2024;24. doi:10.1186/s12888-024-05849-2
apa: Ramming, H., Theuerkauf, L., Hoos, O., Lichter, K., & Kittel-Schneider,
S. (2024). The association between maximal muscle strength, disease severity and
psychopharmacotherapy among young to middle-aged inpatients with affective disorders
– a prospective pilot study. BMC Psychiatry. Springer Nature. https://doi.org/10.1186/s12888-024-05849-2
chicago: Ramming, Hannah, Linda Theuerkauf, Olaf Hoos, Katharina Lichter, and Sarah
Kittel-Schneider. “The Association between Maximal Muscle Strength, Disease Severity
and Psychopharmacotherapy among Young to Middle-Aged Inpatients with Affective
Disorders – a Prospective Pilot Study.” BMC Psychiatry. Springer Nature,
2024. https://doi.org/10.1186/s12888-024-05849-2.
ieee: H. Ramming, L. Theuerkauf, O. Hoos, K. Lichter, and S. Kittel-Schneider, “The
association between maximal muscle strength, disease severity and psychopharmacotherapy
among young to middle-aged inpatients with affective disorders – a prospective
pilot study,” BMC Psychiatry, vol. 24. Springer Nature, 2024.
ista: Ramming H, Theuerkauf L, Hoos O, Lichter K, Kittel-Schneider S. 2024. The
association between maximal muscle strength, disease severity and psychopharmacotherapy
among young to middle-aged inpatients with affective disorders – a prospective
pilot study. BMC Psychiatry. 24, 401.
mla: Ramming, Hannah, et al. “The Association between Maximal Muscle Strength, Disease
Severity and Psychopharmacotherapy among Young to Middle-Aged Inpatients with
Affective Disorders – a Prospective Pilot Study.” BMC Psychiatry, vol.
24, 401, Springer Nature, 2024, doi:10.1186/s12888-024-05849-2.
short: H. Ramming, L. Theuerkauf, O. Hoos, K. Lichter, S. Kittel-Schneider, BMC
Psychiatry 24 (2024).
date_created: 2024-06-09T22:01:01Z
date_published: 2024-05-29T00:00:00Z
date_updated: 2025-04-23T07:51:51Z
day: '29'
ddc:
- '570'
department:
- _id: PeJo
doi: 10.1186/s12888-024-05849-2
external_id:
pmid:
- '38811916'
file:
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checksum: 5df60d3c9388955c5b682ea34748d59d
content_type: application/pdf
creator: dernst
date_created: 2024-06-10T10:44:26Z
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file_name: 2024_BMCPsychiatry_Ramming.pdf
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file_date_updated: 2024-06-10T10:44:26Z
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intvolume: ' 24'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
publication: BMC Psychiatry
publication_identifier:
eissn:
- 1471-244X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: The association between maximal muscle strength, disease severity and psychopharmacotherapy
among young to middle-aged inpatients with affective disorders – a prospective pilot
study
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 24
year: '2024'
...
---
APC_amount: 2570,79 EUR
OA_place: publisher
OA_type: hybrid
_id: '17123'
abstract:
- lang: eng
text: A key feature of many developmental systems is their ability to self-organize
spatial patterns of functionally distinct cell fates. To ensure proper biological
function, such patterns must be established reproducibly, by controlling and even
harnessing intrinsic and extrinsic fluctuations. While the relevant molecular
processes are increasingly well understood, we lack a principled framework to
quantify the performance of such stochastic self-organizing systems. To that end,
we introduce an information-theoretic measure for self-organized fate specification
during embryonic development. We show that the proposed measure assesses the total
information content of fate patterns and decomposes it into interpretable contributions
corresponding to the positional and correlational information. By optimizing the
proposed measure, our framework provides a normative theory for developmental
circuits, which we demonstrate on lateral inhibition, cell type proportioning,
and reaction–diffusion models of self-organization. This paves a way toward a
classification of developmental systems based on a common information-theoretic
language, thereby organizing the zoo of implicated chemical and mechanical signaling
processes.
acknowledgement: We thank Wiktor Młynarski, Juraj Majek, Michal Hledík, Fridtjof Brauns,
Nikolas Claussen, Benjamin Zoller, Erwin Frey, Thomas Gregor, and Edouard Hannezo
for inspiring discussions. D.B.B. was supported by the NOMIS foundation as a NOMIS
Fellow and by an European Molecular Biology Organization (EMBO) Postdoctoral Fellowship
(ALTF 343-2022). This research was performed in part at the Aspen Center for Physics,
which is supported by NSF Grant No. PHY-1607611, and Kavli Institute for Theoretical
Physics (KITP) Santa Barbara, supported by NSF Grant No. PHY-1748958 and the Gordon
and Betty Moore Foundation Grant No. 2919.02.
article_number: e2322326121
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: David
full_name: Brückner, David
id: e1e86031-6537-11eb-953a-f7ab92be508d
last_name: Brückner
orcid: 0000-0001-7205-2975
- first_name: Gašper
full_name: Tkačik, Gašper
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkačik
orcid: 0000-0002-6699-1455
citation:
ama: Brückner D, Tkačik G. Information content and optimization of self-organized
developmental systems. Proceedings of the National Academy of Sciences of the
United States of America. 2024;121(23). doi:10.1073/pnas.2322326121
apa: Brückner, D., & Tkačik, G. (2024). Information content and optimization
of self-organized developmental systems. Proceedings of the National Academy
of Sciences of the United States of America. National Academy of Sciences.
https://doi.org/10.1073/pnas.2322326121
chicago: Brückner, David, and Gašper Tkačik. “Information Content and Optimization
of Self-Organized Developmental Systems.” Proceedings of the National Academy
of Sciences of the United States of America. National Academy of Sciences,
2024. https://doi.org/10.1073/pnas.2322326121.
ieee: D. Brückner and G. Tkačik, “Information content and optimization of self-organized
developmental systems,” Proceedings of the National Academy of Sciences of
the United States of America, vol. 121, no. 23. National Academy of Sciences,
2024.
ista: Brückner D, Tkačik G. 2024. Information content and optimization of self-organized
developmental systems. Proceedings of the National Academy of Sciences of the
United States of America. 121(23), e2322326121.
mla: Brückner, David, and Gašper Tkačik. “Information Content and Optimization of
Self-Organized Developmental Systems.” Proceedings of the National Academy
of Sciences of the United States of America, vol. 121, no. 23, e2322326121,
National Academy of Sciences, 2024, doi:10.1073/pnas.2322326121.
short: D. Brückner, G. Tkačik, Proceedings of the National Academy of Sciences of
the United States of America 121 (2024).
corr_author: '1'
date_created: 2024-06-09T22:01:02Z
date_published: 2024-06-04T00:00:00Z
date_updated: 2025-09-08T07:51:01Z
day: '04'
ddc:
- '570'
department:
- _id: EdHa
- _id: GaTk
doi: 10.1073/pnas.2322326121
external_id:
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- '001244835000006'
pmid:
- '38819997'
file:
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checksum: 59797a75db7beb3721ed7a4d14c241f9
content_type: application/pdf
creator: dernst
date_created: 2024-06-10T10:27:37Z
date_updated: 2024-06-10T10:27:37Z
file_id: '17130'
file_name: 2024_PNAS_Brueckner.pdf
file_size: 12329234
relation: main_file
success: 1
file_date_updated: 2024-06-10T10:27:37Z
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intvolume: ' 121'
isi: 1
issue: '23'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 34e2a5b5-11ca-11ed-8bc3-b2265616ef0b
grant_number: ALTF 343-2022
name: A mechano-chemical theory for stem cell fate decisions in organoid development
publication: Proceedings of the National Academy of Sciences of the United States
of America
publication_identifier:
eissn:
- 1091-6490
issn:
- 0027-8424
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
related_material:
link:
- relation: software
url: https://github.com/dbrueckner/SelforgInformation
- description: News on the ISTA website
relation: press_release
url: https://ista.ac.at/en/news/the-embryo-assembles-itself/
scopus_import: '1'
status: public
title: Information content and optimization of self-organized developmental systems
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 121
year: '2024'
...
---
APC_amount: 4394,84 EUR
OA_place: publisher
OA_type: hybrid
_id: '17124'
abstract:
- lang: eng
text: 'In recent years, solution processes have gained considerable traction as
a cost-effective and scalable method to produce high-performance thermoelectric
materials. The process entails a series of critical steps: synthesis, purification,
thermal treatments, and consolidation, each playing a pivotal role in determining
performance, stability, and reproducibility. We have noticed a need for more comprehensive
details for each of the described steps in most published works. Recognizing the
significance of detailed synthetic protocols, we describe here the approach used
to synthesize and characterize one of the highest-performing polycrystalline p-type
SnSe. In particular, we report the synthesis of SnSe particles in water and the
subsequent surface treatment with CdSe molecular complexes that yields CdSe-SnSe
nanocomposites upon consolidation. Moreover, the surface treatment inhibits grain
growth through Zenner pinning of secondary phase CdSe nanoparticles and enhances
defect formation at different length scales. The enhanced complexity in the CdSe-SnSe
nanocomposite microstructure with respect to SnSe promotes phonon scattering and
thereby significantly reduces the thermal conductivity. Such surface engineering
provides opportunities in solution processing for introducing and controlling
defects, making it possible to optimize the transport properties and attain a
high thermoelectric figure of merit.'
acknowledged_ssus:
- _id: EM-Fac
- _id: LifeSc
acknowledgement: The Scientific Service Units (SSU) of ISTA supported this research
through resources provided by the Electron Microscopy Facility (EMF) and the Lab
Support Facility (LSF). This work was financially supported by the Institute of
Science and Technology Austria and the Werner Siemens Foundation.
article_number: e66278
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Christine
full_name: Fiedler, Christine
id: bd3fceba-dc74-11ea-a0a7-c17f71817366
last_name: Fiedler
- first_name: Yu
full_name: Liu, Yu
id: 2A70014E-F248-11E8-B48F-1D18A9856A87
last_name: Liu
orcid: 0000-0001-7313-6740
- first_name: Maria
full_name: Ibáñez, Maria
id: 43C61214-F248-11E8-B48F-1D18A9856A87
last_name: Ibáñez
orcid: 0000-0001-5013-2843
citation:
ama: Fiedler C, Liu Y, Ibáñez M. Solution-processed, surface-engineered, polycrystalline
CdSe-SnSe exhibiting low thermal conductivity. Journal of Visualized Experiments.
2024;2024(207). doi:10.3791/66278
apa: Fiedler, C., Liu, Y., & Ibáñez, M. (2024). Solution-processed, surface-engineered,
polycrystalline CdSe-SnSe exhibiting low thermal conductivity. Journal of Visualized
Experiments. MyJove Corporation. https://doi.org/10.3791/66278
chicago: Fiedler, Christine, Yu Liu, and Maria Ibáñez. “Solution-Processed, Surface-Engineered,
Polycrystalline CdSe-SnSe Exhibiting Low Thermal Conductivity.” Journal of
Visualized Experiments. MyJove Corporation, 2024. https://doi.org/10.3791/66278.
ieee: C. Fiedler, Y. Liu, and M. Ibáñez, “Solution-processed, surface-engineered,
polycrystalline CdSe-SnSe exhibiting low thermal conductivity,” Journal of
Visualized Experiments, vol. 2024, no. 207. MyJove Corporation, 2024.
ista: Fiedler C, Liu Y, Ibáñez M. 2024. Solution-processed, surface-engineered,
polycrystalline CdSe-SnSe exhibiting low thermal conductivity. Journal of Visualized
Experiments. 2024(207), e66278.
mla: Fiedler, Christine, et al. “Solution-Processed, Surface-Engineered, Polycrystalline
CdSe-SnSe Exhibiting Low Thermal Conductivity.” Journal of Visualized Experiments,
vol. 2024, no. 207, e66278, MyJove Corporation, 2024, doi:10.3791/66278.
short: C. Fiedler, Y. Liu, M. Ibáñez, Journal of Visualized Experiments 2024 (2024).
corr_author: '1'
date_created: 2024-06-09T22:01:02Z
date_published: 2024-05-01T00:00:00Z
date_updated: 2025-09-08T07:51:46Z
day: '01'
ddc:
- '530'
department:
- _id: MaIb
doi: 10.3791/66278
external_id:
isi:
- '001281657200005'
pmid:
- '38829127'
file:
- access_level: open_access
checksum: ddb41f1ce2333484ab5cd109ac2941c0
content_type: application/pdf
creator: dernst
date_created: 2025-02-17T15:08:55Z
date_updated: 2025-02-17T15:08:55Z
file_id: '19047'
file_name: 2024_JoVE_Fiedler.pdf
file_size: 1371995
relation: main_file
success: 1
file_date_updated: 2025-02-17T15:08:55Z
has_accepted_license: '1'
intvolume: ' 2024'
isi: 1
issue: '207'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/3.0/
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 9B8F7476-BA93-11EA-9121-9846C619BF3A
name: 'HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of
Semiconductors for Waste Heat Recovery'
publication: Journal of Visualized Experiments
publication_identifier:
issn:
- 1940-087X
publication_status: published
publisher: MyJove Corporation
quality_controlled: '1'
scopus_import: '1'
status: public
title: Solution-processed, surface-engineered, polycrystalline CdSe-SnSe exhibiting
low thermal conductivity
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/3.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported (CC BY-NC-ND
3.0)
short: CC BY-NC-ND (3.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 2024
year: '2024'
...
---
OA_type: closed access
_id: '17125'
abstract:
- lang: eng
text: We explore the potential of nanocrystals (a term used equivalently to nanoparticles)
as building blocks for nanomaterials, and the current advances and open challenges
for fundamental science developments and applications. Nanocrystal assemblies
are inherently multiscale, and the generation of revolutionary material properties
requires a precise understanding of the relationship between structure and function,
the former being determined by classical effects and the latter often by quantum
effects. With an emphasis on theory and computation, we discuss challenges that
hamper current assembly strategies and to what extent nanocrystal assemblies represent
thermodynamic equilibrium or kinetically trapped metastable states. We also examine
dynamic effects and optimization of assembly protocols. Finally, we discuss promising
material functions and examples of their realization with nanocrystal assemblies.
acknowledgement: This research was supported in part by the National Science Foundation
under Grant No. NSF PHY-1748958 to the Kavli Institute for Theoretical Physics.
The biophysics part of this paper was supported in part by the Gordon and Betty
Moore Foundation Grant No. 2919.02. CLB acknowledges the sponsorship of the Alexander
von Humboldt Foundation through the Humboldt Research Fellowship for postdoctoral
researchers, and the support of the Emerging Talents Initiative (ETI) and the EAM
Starting Grant (EAM-SG23-1) of the Competence Center Engineering of Advanced Materials
of the Friedrich-Alexander-Universität Erlangen-Nürnberg. CLB and ME acknowledge
the support of the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)
Project-ID 416229255-SFB 1411. The research of AT was supported by the U.S. Department
of Energy (U.S. DOE), Office of Basic Energy Sciences, Division of Materials Sciences
and Engineering. Iowa State University operates Ames National Laboratory for the
U.S. DOE under Contract DE-AC02-07CH11358.
article_processing_charge: No
article_type: review
author:
- first_name: Carlos L.
full_name: Bassani, Carlos L.
last_name: Bassani
- first_name: Greg
full_name: Van Anders, Greg
last_name: Van Anders
- first_name: Uri
full_name: Banin, Uri
last_name: Banin
- first_name: Dmitry
full_name: Baranov, Dmitry
last_name: Baranov
- first_name: Qian
full_name: Chen, Qian
last_name: Chen
- first_name: Marjolein
full_name: Dijkstra, Marjolein
last_name: Dijkstra
- first_name: Michael S.
full_name: Dimitriyev, Michael S.
last_name: Dimitriyev
- first_name: Efi
full_name: Efrati, Efi
last_name: Efrati
- first_name: Jordi
full_name: Faraudo, Jordi
last_name: Faraudo
- first_name: Oleg
full_name: Gang, Oleg
last_name: Gang
- first_name: Nicola
full_name: Gaston, Nicola
last_name: Gaston
- first_name: Ramin
full_name: Golestanian, Ramin
last_name: Golestanian
- first_name: G. Ivan
full_name: Guerrero-Garcia, G. Ivan
last_name: Guerrero-Garcia
- first_name: Michael
full_name: Gruenwald, Michael
last_name: Gruenwald
- first_name: Amir
full_name: Haji-Akbari, Amir
last_name: Haji-Akbari
- first_name: Maria
full_name: Ibáñez, Maria
id: 43C61214-F248-11E8-B48F-1D18A9856A87
last_name: Ibáñez
orcid: 0000-0001-5013-2843
- first_name: Matthias
full_name: Karg, Matthias
last_name: Karg
- first_name: Tobias
full_name: Kraus, Tobias
last_name: Kraus
- first_name: Byeongdu
full_name: Lee, Byeongdu
last_name: Lee
- first_name: Reid C.
full_name: Van Lehn, Reid C.
last_name: Van Lehn
- first_name: Robert J.
full_name: Macfarlane, Robert J.
last_name: Macfarlane
- first_name: Bortolo M.
full_name: Mognetti, Bortolo M.
last_name: Mognetti
- first_name: Arash
full_name: Nikoubashman, Arash
last_name: Nikoubashman
- first_name: Saeed
full_name: Osat, Saeed
last_name: Osat
- first_name: Oleg V.
full_name: Prezhdo, Oleg V.
last_name: Prezhdo
- first_name: Grant M.
full_name: Rotskoff, Grant M.
last_name: Rotskoff
- first_name: Leonor
full_name: Saiz, Leonor
last_name: Saiz
- first_name: An Chang
full_name: Shi, An Chang
last_name: Shi
- first_name: Sara
full_name: Skrabalak, Sara
last_name: Skrabalak
- first_name: Ivan I.
full_name: Smalyukh, Ivan I.
last_name: Smalyukh
- first_name: Mario
full_name: Tagliazucchi, Mario
last_name: Tagliazucchi
- first_name: Dmitri V.
full_name: Talapin, Dmitri V.
last_name: Talapin
- first_name: Alexei V.
full_name: Tkachenko, Alexei V.
last_name: Tkachenko
- first_name: Sergei
full_name: Tretiak, Sergei
last_name: Tretiak
- first_name: David
full_name: Vaknin, David
last_name: Vaknin
- first_name: Asaph
full_name: Widmer-Cooper, Asaph
last_name: Widmer-Cooper
- first_name: Gerard C.L.
full_name: Wong, Gerard C.L.
last_name: Wong
- first_name: Xingchen
full_name: Ye, Xingchen
last_name: Ye
- first_name: Shan
full_name: Zhou, Shan
last_name: Zhou
- first_name: Eran
full_name: Rabani, Eran
last_name: Rabani
- first_name: Michael
full_name: Engel, Michael
last_name: Engel
- first_name: Alex
full_name: Travesset, Alex
last_name: Travesset
citation:
ama: 'Bassani CL, Van Anders G, Banin U, et al. Nanocrystal assemblies: Current
advances and open problems. ACS Nano. 2024;18(23):14791-14840. doi:10.1021/acsnano.3c10201'
apa: 'Bassani, C. L., Van Anders, G., Banin, U., Baranov, D., Chen, Q., Dijkstra,
M., … Travesset, A. (2024). Nanocrystal assemblies: Current advances and open
problems. ACS Nano. American Chemical Society. https://doi.org/10.1021/acsnano.3c10201'
chicago: 'Bassani, Carlos L., Greg Van Anders, Uri Banin, Dmitry Baranov, Qian Chen,
Marjolein Dijkstra, Michael S. Dimitriyev, et al. “Nanocrystal Assemblies: Current
Advances and Open Problems.” ACS Nano. American Chemical Society, 2024.
https://doi.org/10.1021/acsnano.3c10201.'
ieee: 'C. L. Bassani et al., “Nanocrystal assemblies: Current advances and
open problems,” ACS Nano, vol. 18, no. 23. American Chemical Society, pp.
14791–14840, 2024.'
ista: 'Bassani CL, Van Anders G, Banin U, Baranov D, Chen Q, Dijkstra M, Dimitriyev
MS, Efrati E, Faraudo J, Gang O, Gaston N, Golestanian R, Guerrero-Garcia GI,
Gruenwald M, Haji-Akbari A, Ibáñez M, Karg M, Kraus T, Lee B, Van Lehn RC, Macfarlane
RJ, Mognetti BM, Nikoubashman A, Osat S, Prezhdo OV, Rotskoff GM, Saiz L, Shi
AC, Skrabalak S, Smalyukh II, Tagliazucchi M, Talapin DV, Tkachenko AV, Tretiak
S, Vaknin D, Widmer-Cooper A, Wong GCL, Ye X, Zhou S, Rabani E, Engel M, Travesset
A. 2024. Nanocrystal assemblies: Current advances and open problems. ACS Nano.
18(23), 14791–14840.'
mla: 'Bassani, Carlos L., et al. “Nanocrystal Assemblies: Current Advances and Open
Problems.” ACS Nano, vol. 18, no. 23, American Chemical Society, 2024,
pp. 14791–840, doi:10.1021/acsnano.3c10201.'
short: C.L. Bassani, G. Van Anders, U. Banin, D. Baranov, Q. Chen, M. Dijkstra,
M.S. Dimitriyev, E. Efrati, J. Faraudo, O. Gang, N. Gaston, R. Golestanian, G.I.
Guerrero-Garcia, M. Gruenwald, A. Haji-Akbari, M. Ibáñez, M. Karg, T. Kraus, B.
Lee, R.C. Van Lehn, R.J. Macfarlane, B.M. Mognetti, A. Nikoubashman, S. Osat,
O.V. Prezhdo, G.M. Rotskoff, L. Saiz, A.C. Shi, S. Skrabalak, I.I. Smalyukh, M.
Tagliazucchi, D.V. Talapin, A.V. Tkachenko, S. Tretiak, D. Vaknin, A. Widmer-Cooper,
G.C.L. Wong, X. Ye, S. Zhou, E. Rabani, M. Engel, A. Travesset, ACS Nano 18 (2024)
14791–14840.
date_created: 2024-06-09T22:01:02Z
date_published: 2024-05-30T00:00:00Z
date_updated: 2025-09-08T07:52:37Z
day: '30'
department:
- _id: MaIb
doi: 10.1021/acsnano.3c10201
external_id:
isi:
- '001236199900001'
pmid:
- '38814908'
intvolume: ' 18'
isi: 1
issue: '23'
language:
- iso: eng
month: '05'
oa_version: None
page: 14791-14840
pmid: 1
publication: ACS Nano
publication_identifier:
eissn:
- 1936-086X
issn:
- 1936-0851
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Nanocrystal assemblies: Current advances and open problems'
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 18
year: '2024'
...
---
_id: '17126'
abstract:
- lang: eng
text: "Functional encryption (FE) is a primitive where the holder of a master secret
key can control which functions a user can evaluate on encrypted data. It is a
powerful primitive that even implies indistinguishability obfuscation (iO), given
sufficiently compact ciphertexts (Ananth-Jain, CRYPTO’15 and Bitansky-Vaikuntanathan,
FOCS’15). However, despite being extensively studied, there are FE schemes, such
as function-hiding inner-product FE (Bishop-Jain-Kowalczyk, AC’15, Abdalla-Catalano-Fiore-Gay-Ursu,
CRYPTO’18) and compact quadratic FE (Baltico-Catalano-Fiore-Gay, Lin, CRYPTO’17),
that can be only realized using pairings. This raises the question if there are
some mathematical barriers that hinder us from realizing these FE schemes from
other assumptions.\r\n\r\nIn this paper, we study the difficulty of constructing
lattice-based compact FE. We generalize the impossibility results of Ünal (EC’20)
for lattice-based function-hiding FE, and extend it to the case of compact FE.
Concretely, we prove lower bounds for lattice-based compact FE schemes which meet
some (natural) algebraic restrictions at encryption and decryption, and have ciphertexts
of linear size and secret keys of minimal degree. We see our results as important
indications of why it is hard to construct lattice-based FE schemes for new functionalities,
and which mathematical barriers have to be overcome."
acknowledgement: We want to thank the anonymous reviewers of TCC and Eurocrypt for
their very helpful comments and suggestions. This work has received funding from
the Austrian Science Fund (FWF) and netidee SCIENCE via grant P31621-N38 (PROFET).
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Erkan
full_name: Tairi, Erkan
last_name: Tairi
- first_name: Akin
full_name: Ünal, Akin
id: f6b56fb6-dc63-11ee-9dbf-f6780863a85a
last_name: Ünal
orcid: 0000-0002-8929-0221
citation:
ama: 'Tairi E, Ünal A. Lower bounds for lattice-based compact functional encryption.
In: Advances in Cryptology – EUROCRYPT 2024. Vol 14652. Springer Nature;
2024:249-279. doi:10.1007/978-3-031-58723-8_9'
apa: 'Tairi, E., & Ünal, A. (2024). Lower bounds for lattice-based compact functional
encryption. In Advances in Cryptology – EUROCRYPT 2024 (Vol. 14652, pp.
249–279). Zurich, Switzerland: Springer Nature. https://doi.org/10.1007/978-3-031-58723-8_9'
chicago: Tairi, Erkan, and Akin Ünal. “Lower Bounds for Lattice-Based Compact Functional
Encryption.” In Advances in Cryptology – EUROCRYPT 2024, 14652:249–79.
Springer Nature, 2024. https://doi.org/10.1007/978-3-031-58723-8_9.
ieee: E. Tairi and A. Ünal, “Lower bounds for lattice-based compact functional encryption,”
in Advances in Cryptology – EUROCRYPT 2024, Zurich, Switzerland, 2024,
vol. 14652, pp. 249–279.
ista: 'Tairi E, Ünal A. 2024. Lower bounds for lattice-based compact functional
encryption. Advances in Cryptology – EUROCRYPT 2024. EUROCRYPT: Theory and Applications
of Cryptographic Techniques, LNCS, vol. 14652, 249–279.'
mla: Tairi, Erkan, and Akin Ünal. “Lower Bounds for Lattice-Based Compact Functional
Encryption.” Advances in Cryptology – EUROCRYPT 2024, vol. 14652, Springer
Nature, 2024, pp. 249–79, doi:10.1007/978-3-031-58723-8_9.
short: E. Tairi, A. Ünal, in:, Advances in Cryptology – EUROCRYPT 2024, Springer
Nature, 2024, pp. 249–279.
conference:
end_date: 2024-05-30
location: Zurich, Switzerland
name: 'EUROCRYPT: Theory and Applications of Cryptographic Techniques'
start_date: 2024-05-26
date_created: 2024-06-09T22:01:03Z
date_published: 2024-05-08T00:00:00Z
date_updated: 2025-09-08T07:48:18Z
day: '08'
department:
- _id: KrPi
doi: 10.1007/978-3-031-58723-8_9
external_id:
isi:
- '001278247600009'
intvolume: ' 14652'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://eprint.iacr.org/2023/719.pdf
month: '05'
oa: 1
oa_version: Submitted Version
page: 249-279
publication: Advances in Cryptology – EUROCRYPT 2024
publication_identifier:
eissn:
- 1611-3349
isbn:
- '9783031587221'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Lower bounds for lattice-based compact functional encryption
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 14652
year: '2024'
...
---
_id: '17127'
abstract:
- lang: eng
text: "Let P(x)∈Z[x] be a polynomial with at least two distinct complex roots.
We prove that the number of solutions (x1,…,xk,y1,…,yk)∈[N]2k to the equation\r\n∏1≤i≤kP(xi)=∏1≤j≤kP(yj)≠0\r\n(for
any k≥1 ) is asymptotically k!Nk as N→+∞. This solves a question first proposed
and studied by Najnudel. The result can also be interpreted as saying that all
even moments of random partial sums 1N√∑n≤Nf(P(n)) match standard complex Gaussian
moments as N→+∞\r\n , where f is the Steinhaus random multiplicative function."
acknowledgement: 'We thank Oleksiy Klurman, Ilya Shkredov, and Igor Shparlinski for
helpful comments on earlier versions of the paper, and thank Yotam Hendel for providing
a reference for Lemma 2.1. We also thank the anonymous referee for their generous
corrections and comments. The first author has received funding from the European
Union''s Horizon 2020 Research and Innovation Program under the Marie Skłodowska-Curie
Grant Agreement Number: 101034413. The second author is partially supported by the
Cuthbert C. Hurd Graduate Fellowship in the Mathematical Sciences, Stanford.'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Victor
full_name: Wang, Victor
id: 76096395-aea4-11ed-a680-ab8ebbd3f1b9
last_name: Wang
orcid: 0000-0002-0704-7026
- first_name: Max Wenqiang
full_name: Xu, Max Wenqiang
last_name: Xu
citation:
ama: Wang V, Xu MW. Paucity phenomena for polynomial products. Bulletin of the
London Mathematical Society. 2024;56(8):2718-2726. doi:10.1112/blms.13095
apa: Wang, V., & Xu, M. W. (2024). Paucity phenomena for polynomial products.
Bulletin of the London Mathematical Society. London Mathematical Society.
https://doi.org/10.1112/blms.13095
chicago: Wang, Victor, and Max Wenqiang Xu. “Paucity Phenomena for Polynomial Products.”
Bulletin of the London Mathematical Society. London Mathematical Society,
2024. https://doi.org/10.1112/blms.13095.
ieee: V. Wang and M. W. Xu, “Paucity phenomena for polynomial products,” Bulletin
of the London Mathematical Society, vol. 56, no. 8. London Mathematical Society,
pp. 2718–2726, 2024.
ista: Wang V, Xu MW. 2024. Paucity phenomena for polynomial products. Bulletin of
the London Mathematical Society. 56(8), 2718–2726.
mla: Wang, Victor, and Max Wenqiang Xu. “Paucity Phenomena for Polynomial Products.”
Bulletin of the London Mathematical Society, vol. 56, no. 8, London Mathematical
Society, 2024, pp. 2718–26, doi:10.1112/blms.13095.
short: V. Wang, M.W. Xu, Bulletin of the London Mathematical Society 56 (2024) 2718–2726.
date_created: 2024-06-09T22:01:03Z
date_published: 2024-08-01T00:00:00Z
date_updated: 2025-09-08T08:57:32Z
day: '01'
ddc:
- '512'
department:
- _id: TiBr
doi: 10.1112/blms.13095
ec_funded: 1
external_id:
arxiv:
- '2211.02908'
isi:
- '001235729900001'
file:
- access_level: open_access
checksum: ae386a4031856efac23c7cdcb53b559b
content_type: application/pdf
creator: vwang
date_created: 2024-08-20T08:36:32Z
date_updated: 2024-08-20T08:36:32Z
file_id: '17446'
file_name: Paucity_phenomena_for_polynomial_products__Wang_Xu_ (7).pdf
file_size: 331775
relation: main_file
success: 1
file_date_updated: 2024-08-20T08:36:32Z
has_accepted_license: '1'
intvolume: ' 56'
isi: 1
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2211.02908
month: '08'
oa: 1
oa_version: Submitted Version
page: 2718-2726
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
publication: Bulletin of the London Mathematical Society
publication_identifier:
eissn:
- 1469-2120
issn:
- 0024-6093
publication_status: published
publisher: London Mathematical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Paucity phenomena for polynomial products
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 56
year: '2024'
...
---
_id: '17128'
abstract:
- lang: eng
text: The onset of turbulence in pipe flow has defied detailed understanding ever
since the first observations of the spatially heterogeneous nature of the transition.
Recent theoretical studies and experiments in simpler, shear-driven flows suggest
that the onset of turbulence is a directed-percolation non-equilibrium phase transition,
but whether these findings are generic and also apply to open or pressure-driven
flows is unknown. In pipe flow, the extremely long time scales near the transition
make direct observations of critical behaviour virtually impossible. Here we find
a technical solution to that limitation and show that the universality class of
the transition is directed percolation, from which a jammed phase of puffs emerges
above the critical point. Our method is to experimentally characterize all pairwise
interactions between localized patches of turbulence puffs and use these interactions
as input for renormalization group and computer simulations of minimal models
that extrapolate to long length and time scales. The strong interactions in the
jamming regime enable us to explicitly measure the turbulent fraction and confirm
model predictions. Our work shows that directed-percolation scaling applies beyond
simple closed shear flows and underscores how statistical mechanics can lead to
profound, quantitative and predictive insights on turbulent flows and their phases.
acknowledgement: We gratefully acknowledge the assistance of J. M. Lopez with DNSs
at an early stage of this work. This work was partially supported by two grants
from the Simons Foundation (grant nos. 662985 (N.G.) and 662960 (B.H.)) and by Ministry
of Science and Technology, Taiwan (grant nos. MOST 109-2112-M-001-017-MY3 and MOST
111-2112-M-001-027-MY3 (H.-Y.S.)). Part of this work was performed using computing
resources of CRIANN (Normandy, France).
article_processing_charge: No
article_type: original
author:
- first_name: Grégoire M
full_name: Lemoult, Grégoire M
id: 4787FE80-F248-11E8-B48F-1D18A9856A87
last_name: Lemoult
- first_name: Mukund
full_name: Vasudevan, Mukund
id: 3C5A959A-F248-11E8-B48F-1D18A9856A87
last_name: Vasudevan
- first_name: Hong Yan
full_name: Shih, Hong Yan
last_name: Shih
- first_name: Gaute
full_name: Linga, Gaute
last_name: Linga
- first_name: Joachim
full_name: Mathiesen, Joachim
last_name: Mathiesen
- first_name: Nigel
full_name: Goldenfeld, Nigel
last_name: Goldenfeld
- first_name: Björn
full_name: Hof, Björn
id: 3A374330-F248-11E8-B48F-1D18A9856A87
last_name: Hof
orcid: 0000-0003-2057-2754
citation:
ama: Lemoult GM, Vasudevan M, Shih HY, et al. Directed percolation and puff jamming
near the transition to pipe turbulence. Nature Physics. 2024;20:1339-1345.
doi:10.1038/s41567-024-02513-0
apa: Lemoult, G. M., Vasudevan, M., Shih, H. Y., Linga, G., Mathiesen, J., Goldenfeld,
N., & Hof, B. (2024). Directed percolation and puff jamming near the transition
to pipe turbulence. Nature Physics. Springer Nature. https://doi.org/10.1038/s41567-024-02513-0
chicago: Lemoult, Grégoire M, Mukund Vasudevan, Hong Yan Shih, Gaute Linga, Joachim
Mathiesen, Nigel Goldenfeld, and Björn Hof. “Directed Percolation and Puff Jamming
near the Transition to Pipe Turbulence.” Nature Physics. Springer Nature,
2024. https://doi.org/10.1038/s41567-024-02513-0.
ieee: G. M. Lemoult et al., “Directed percolation and puff jamming near the
transition to pipe turbulence,” Nature Physics, vol. 20. Springer Nature,
pp. 1339–1345, 2024.
ista: Lemoult GM, Vasudevan M, Shih HY, Linga G, Mathiesen J, Goldenfeld N, Hof
B. 2024. Directed percolation and puff jamming near the transition to pipe turbulence.
Nature Physics. 20, 1339–1345.
mla: Lemoult, Grégoire M., et al. “Directed Percolation and Puff Jamming near the
Transition to Pipe Turbulence.” Nature Physics, vol. 20, Springer Nature,
2024, pp. 1339–45, doi:10.1038/s41567-024-02513-0.
short: G.M. Lemoult, M. Vasudevan, H.Y. Shih, G. Linga, J. Mathiesen, N. Goldenfeld,
B. Hof, Nature Physics 20 (2024) 1339–1345.
corr_author: '1'
date_created: 2024-06-09T22:01:03Z
date_published: 2024-08-01T00:00:00Z
date_updated: 2025-09-08T07:50:20Z
day: '01'
department:
- _id: BjHo
doi: 10.1038/s41567-024-02513-0
external_id:
isi:
- '001232300600001'
intvolume: ' 20'
isi: 1
language:
- iso: eng
month: '08'
oa_version: None
page: 1339-1345
project:
- _id: 238598C6-32DE-11EA-91FC-C7463DDC885E
grant_number: '662960'
name: Revisiting the Turbulence Problem Using Statistical Mechanics
publication: Nature Physics
publication_identifier:
eissn:
- 1745-2481
issn:
- 1745-2473
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Directed percolation and puff jamming near the transition to pipe turbulence
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 20
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '17141'
abstract:
- lang: eng
text: The TIR1/AFB–Aux/IAA–ARF canonical auxin signaling pathway is widely accepted
to (de)active transcriptional regulation, thus controlling auxin-associated developmental
processes. However, the theme of a rapid auxin response has emerged since the
2018 Auxins and Cytokinin in Plant Development conference. To date, a few signaling
components have been identified to mediate both slow and rapid auxin responses,
which unveils the complexity of auxin signaling.
acknowledgement: "We thank other lab members for their critical comments on this manuscript.
We also thank the editor and reviewers for their constructive comments to improve
our manuscript. We apologize to authors whose important work we could not include
due to space limitations.\r\nThis work is supported by funding from Jiangxi Agricultural
University (9232308314) and the Science and Technology Department of Jiangxi Province
(20223BCJ25037) to HBH, and the Science and Technology Department of Jiangxi Province
(20202ACB215002) to SYP."
article_number: erae246
article_processing_charge: No
article_type: original
author:
- first_name: Zilin
full_name: Zhang, Zilin
last_name: Zhang
- first_name: Huihuang
full_name: Chen, Huihuang
id: 83c96512-15b2-11ec-abd3-b7eede36184f
last_name: Chen
- first_name: Shuaiying
full_name: Peng, Shuaiying
last_name: Peng
- first_name: Huibin
full_name: Han, Huibin
last_name: Han
citation:
ama: Zhang Z, Chen H, Peng S, Han H. Slow and rapid auxin responses in Arabidopsis.
Journal of Experimental Botany. 2024;75(18). doi:10.1093/jxb/erae246
apa: Zhang, Z., Chen, H., Peng, S., & Han, H. (2024). Slow and rapid auxin responses
in Arabidopsis. Journal of Experimental Botany. Oxford University Press.
https://doi.org/10.1093/jxb/erae246
chicago: Zhang, Zilin, Huihuang Chen, Shuaiying Peng, and Huibin Han. “Slow and
Rapid Auxin Responses in Arabidopsis.” Journal of Experimental Botany.
Oxford University Press, 2024. https://doi.org/10.1093/jxb/erae246.
ieee: Z. Zhang, H. Chen, S. Peng, and H. Han, “Slow and rapid auxin responses in
Arabidopsis,” Journal of Experimental Botany, vol. 75, no. 18. Oxford University
Press, 2024.
ista: Zhang Z, Chen H, Peng S, Han H. 2024. Slow and rapid auxin responses in Arabidopsis.
Journal of Experimental Botany. 75(18), erae246.
mla: Zhang, Zilin, et al. “Slow and Rapid Auxin Responses in Arabidopsis.” Journal
of Experimental Botany, vol. 75, no. 18, erae246, Oxford University Press,
2024, doi:10.1093/jxb/erae246.
short: Z. Zhang, H. Chen, S. Peng, H. Han, Journal of Experimental Botany 75 (2024).
date_created: 2024-06-15T19:50:15Z
date_published: 2024-09-27T00:00:00Z
date_updated: 2025-09-08T07:57:50Z
day: '27'
ddc:
- '580'
department:
- _id: GradSch
- _id: JiFr
doi: 10.1093/jxb/erae246
external_id:
isi:
- '001270051200001'
pmid:
- '38794966'
file:
- access_level: open_access
checksum: 91b9435ed0f6640809c7588df19abf2f
content_type: application/pdf
creator: dernst
date_created: 2025-01-02T10:26:22Z
date_updated: 2025-01-02T10:26:22Z
file_id: '18720'
file_name: 2024_JourExperimentalBotany_Zhang.pdf
file_size: 763097
relation: main_file
success: 1
file_date_updated: 2025-01-02T10:26:22Z
has_accepted_license: '1'
intvolume: ' 75'
isi: 1
issue: '18'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
pmid: 1
publication: Journal of Experimental Botany
publication_identifier:
issn:
- 0022-0957
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Slow and rapid auxin responses in Arabidopsis
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 75
year: '2024'
...
---
APC_amount: 6081,83 EUR
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '17142'
abstract:
- lang: eng
text: Despite the diverse genetic origins of autism spectrum disorders (ASDs), affected
individuals share strikingly similar and correlated behavioural traits that include
perceptual and sensory processing challenges. Notably, the severity of these sensory
symptoms is often predictive of the expression of other autistic traits. However,
the origin of these perceptual deficits remains largely elusive. Here, we show
a recurrent impairment in visual threat perception that is similarly impaired
in 3 independent mouse models of ASD with different molecular aetiologies. Interestingly,
this deficit is associated with reduced avoidance of threatening environments—a
nonperceptual trait. Focusing on a common cause of ASDs, the Setd5 gene mutation,
we define the molecular mechanism. We show that the perceptual impairment is caused
by a potassium channel (Kv1)-mediated hypoexcitability in a subcortical node essential
for the initiation of escape responses, the dorsal periaqueductal grey (dPAG).
Targeted pharmacological Kv1 blockade rescued both perceptual and place avoidance
deficits, causally linking seemingly unrelated trait deficits to the dPAG. Furthermore,
we show that different molecular mechanisms converge on similar behavioural phenotypes
by demonstrating that the autism models Cul3 and Ptchd1, despite having similar
behavioural phenotypes, differ in their functional and molecular alteration. Our
findings reveal a link between rapid perception controlled by subcortical pathways
and appropriate learned interactions with the environment and define a nondevelopmental
source of such deficits in ASD.
acknowledgement: 'This work was supported by a European Research Council Starting
Grant 756502 (MJ). '
article_number: e3002668
article_processing_charge: Yes
article_type: original
author:
- first_name: Laura
full_name: Burnett, Laura
id: 3B717F68-F248-11E8-B48F-1D18A9856A87
last_name: Burnett
orcid: 0000-0002-8937-410X
- first_name: Peter
full_name: Koppensteiner, Peter
id: 3B8B25A8-F248-11E8-B48F-1D18A9856A87
last_name: Koppensteiner
orcid: 0000-0002-3509-1948
- first_name: Olga
full_name: Symonova, Olga
id: 3C0C7BC6-F248-11E8-B48F-1D18A9856A87
last_name: Symonova
orcid: 0000-0003-2012-9947
- first_name: Tomas
full_name: Masson, Tomas
id: 93ac43e8-8599-11eb-9b86-f6efb0a4c207
last_name: Masson
orcid: 0000-0002-2634-6283
- first_name: Tomas A
full_name: Vega Zuniga, Tomas A
id: 2E7C4E78-F248-11E8-B48F-1D18A9856A87
last_name: Vega Zuniga
- first_name: Ximena
full_name: Contreras, Ximena
id: 475990FE-F248-11E8-B48F-1D18A9856A87
last_name: Contreras
- first_name: Thomas
full_name: Rülicke, Thomas
last_name: Rülicke
- first_name: Ryuichi
full_name: Shigemoto, Ryuichi
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
- first_name: Gaia
full_name: Novarino, Gaia
id: 3E57A680-F248-11E8-B48F-1D18A9856A87
last_name: Novarino
orcid: 0000-0002-7673-7178
- first_name: Maximilian A
full_name: Jösch, Maximilian A
id: 2BD278E6-F248-11E8-B48F-1D18A9856A87
last_name: Jösch
orcid: 0000-0002-3937-1330
citation:
ama: Burnett L, Koppensteiner P, Symonova O, et al. Shared behavioural impairments
in visual perception and place avoidance across different autism models are driven
by periaqueductal grey hypoexcitability in Setd5 haploinsufficient mice. PLoS
Biology. 2024;22. doi:10.1371/journal.pbio.3002668
apa: Burnett, L., Koppensteiner, P., Symonova, O., Masson, T., Vega Zuniga, T. A.,
Contreras, X., … Jösch, M. A. (2024). Shared behavioural impairments in visual
perception and place avoidance across different autism models are driven by periaqueductal
grey hypoexcitability in Setd5 haploinsufficient mice. PLoS Biology. Public
Library of Science. https://doi.org/10.1371/journal.pbio.3002668
chicago: Burnett, Laura, Peter Koppensteiner, Olga Symonova, Tomas Masson, Tomas
A Vega Zuniga, Ximena Contreras, Thomas Rülicke, Ryuichi Shigemoto, Gaia Novarino,
and Maximilian A Jösch. “Shared Behavioural Impairments in Visual Perception and
Place Avoidance across Different Autism Models Are Driven by Periaqueductal Grey
Hypoexcitability in Setd5 Haploinsufficient Mice.” PLoS Biology. Public
Library of Science, 2024. https://doi.org/10.1371/journal.pbio.3002668.
ieee: L. Burnett et al., “Shared behavioural impairments in visual perception
and place avoidance across different autism models are driven by periaqueductal
grey hypoexcitability in Setd5 haploinsufficient mice,” PLoS Biology, vol.
22. Public Library of Science, 2024.
ista: Burnett L, Koppensteiner P, Symonova O, Masson T, Vega Zuniga TA, Contreras
X, Rülicke T, Shigemoto R, Novarino G, Jösch MA. 2024. Shared behavioural impairments
in visual perception and place avoidance across different autism models are driven
by periaqueductal grey hypoexcitability in Setd5 haploinsufficient mice. PLoS
Biology. 22, e3002668.
mla: Burnett, Laura, et al. “Shared Behavioural Impairments in Visual Perception
and Place Avoidance across Different Autism Models Are Driven by Periaqueductal
Grey Hypoexcitability in Setd5 Haploinsufficient Mice.” PLoS Biology, vol.
22, e3002668, Public Library of Science, 2024, doi:10.1371/journal.pbio.3002668.
short: L. Burnett, P. Koppensteiner, O. Symonova, T. Masson, T.A. Vega Zuniga, X.
Contreras, T. Rülicke, R. Shigemoto, G. Novarino, M.A. Jösch, PLoS Biology 22
(2024).
corr_author: '1'
date_created: 2024-06-16T22:01:05Z
date_published: 2024-06-10T00:00:00Z
date_updated: 2025-09-08T07:57:11Z
day: '10'
ddc:
- '570'
department:
- _id: RySh
- _id: GaNo
- _id: MaJö
doi: 10.1371/journal.pbio.3002668
ec_funded: 1
external_id:
isi:
- '001246176800003'
pmid:
- '38857283'
file:
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checksum: 496e1aa4fd5b92b7e4087ecc2c964133
content_type: application/pdf
creator: dernst
date_created: 2025-01-09T10:39:41Z
date_updated: 2025-01-09T10:39:41Z
file_id: '18805'
file_name: 2024_PloS_Burnett.pdf
file_size: 4016568
relation: main_file
success: 1
file_date_updated: 2025-01-09T10:39:41Z
has_accepted_license: '1'
intvolume: ' 22'
isi: 1
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 2634E9D2-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '756502'
name: Circuits of Visual Attention
publication: PLoS Biology
publication_identifier:
eissn:
- 1545-7885
issn:
- 1544-9173
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
related_material:
link:
- relation: software
url: https://doi.org/10.5281/zenodo.11130587
record:
- id: '15385'
relation: research_data
status: public
scopus_import: '1'
status: public
title: Shared behavioural impairments in visual perception and place avoidance across
different autism models are driven by periaqueductal grey hypoexcitability in Setd5
haploinsufficient mice
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 22
year: '2024'
...
---
_id: '17144'
abstract:
- lang: eng
text: "We prove that the medial axis of closed sets is Hausdorff stable in the following
sense: Let \U0001D4AE ⊆ ℝ^d be a fixed closed set that contains a bounding sphere.
That is, the bounding sphere is part of the set \U0001D4AE. Consider the space
of C^{1,1} diffeomorphisms of ℝ^d to itself, which keep the bounding sphere invariant.
The map from this space of diffeomorphisms (endowed with a Banach norm) to the
space of closed subsets of ℝ^d (endowed with the Hausdorff distance), mapping
a diffeomorphism F to the closure of the medial axis of F(\U0001D4AE), is Lipschitz.
This extends a previous stability result of Chazal and Soufflet on the stability
of the medial axis of C² manifolds under C² ambient diffeomorphisms."
acknowledgement: "This research has been supported by the European Research Council
(ERC), grant No. 788183, by the Wittgenstein Prize, Austrian Science Fund (FWF),
grant No. Z 342-N31, and by the DFG Collaborative Research Center TRR 109, Austrian
Science Fund (FWF), grant No. I 02979-N35.\r\nSupported by the European Union’s
Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie
grant agreement No. 754411, the Austrian science fund (FWF) grant No. M-3073, and
the welcome package from IDEX of the Université Cô d'Azur.\r\nWe are greatly indebted
to Fred Chazal for sharing his insights. We further thank Erin Chambers, Christopher
Fillmore, and Elizabeth Stephenson for early discussions and all members of the
Edelsbrunner group (Institute of Science and Technology Austria) and the Datashape
team (Inria) for the atmosphere in which this research was conducted."
alternative_title:
- LIPIcs
article_number: '69'
article_processing_charge: No
arxiv: 1
author:
- first_name: Hana
full_name: Kourimska, Hana
id: D9B8E14C-3C26-11EA-98F5-1F833DDC885E
last_name: Kourimska
orcid: 0000-0001-7841-0091
- first_name: André
full_name: Lieutier, André
last_name: Lieutier
- first_name: Mathijs
full_name: Wintraecken, Mathijs
id: 307CFBC8-F248-11E8-B48F-1D18A9856A87
last_name: Wintraecken
orcid: 0000-0002-7472-2220
citation:
ama: 'Kourimska H, Lieutier A, Wintraecken M. The medial axis of any closed bounded
set Is Lipschitz stable with respect to the Hausdorff distance Under ambient diffeomorphisms.
In: 40th International Symposium on Computational Geometry. Vol 293. Schloss
Dagstuhl - Leibniz-Zentrum für Informatik; 2024. doi:10.4230/LIPIcs.SoCG.2024.69'
apa: 'Kourimska, H., Lieutier, A., & Wintraecken, M. (2024). The medial axis
of any closed bounded set Is Lipschitz stable with respect to the Hausdorff distance
Under ambient diffeomorphisms. In 40th International Symposium on Computational
Geometry (Vol. 293). Athens, Greece: Schloss Dagstuhl - Leibniz-Zentrum für
Informatik. https://doi.org/10.4230/LIPIcs.SoCG.2024.69'
chicago: Kourimska, Hana, André Lieutier, and Mathijs Wintraecken. “The Medial Axis
of Any Closed Bounded Set Is Lipschitz Stable with Respect to the Hausdorff Distance
Under Ambient Diffeomorphisms.” In 40th International Symposium on Computational
Geometry, Vol. 293. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2024.
https://doi.org/10.4230/LIPIcs.SoCG.2024.69.
ieee: H. Kourimska, A. Lieutier, and M. Wintraecken, “The medial axis of any closed
bounded set Is Lipschitz stable with respect to the Hausdorff distance Under ambient
diffeomorphisms,” in 40th International Symposium on Computational Geometry,
Athens, Greece, 2024, vol. 293.
ista: 'Kourimska H, Lieutier A, Wintraecken M. 2024. The medial axis of any closed
bounded set Is Lipschitz stable with respect to the Hausdorff distance Under ambient
diffeomorphisms. 40th International Symposium on Computational Geometry. SoCG:
Symposium on Computational Geometry, LIPIcs, vol. 293, 69.'
mla: Kourimska, Hana, et al. “The Medial Axis of Any Closed Bounded Set Is Lipschitz
Stable with Respect to the Hausdorff Distance Under Ambient Diffeomorphisms.”
40th International Symposium on Computational Geometry, vol. 293, 69, Schloss
Dagstuhl - Leibniz-Zentrum für Informatik, 2024, doi:10.4230/LIPIcs.SoCG.2024.69.
short: H. Kourimska, A. Lieutier, M. Wintraecken, in:, 40th International Symposium
on Computational Geometry, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
2024.
conference:
end_date: 2024-06-14
location: Athens, Greece
name: 'SoCG: Symposium on Computational Geometry'
date_created: 2024-06-16T22:01:06Z
date_published: 2024-06-01T00:00:00Z
date_updated: 2025-04-15T07:16:58Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.4230/LIPIcs.SoCG.2024.69
ec_funded: 1
external_id:
arxiv:
- '2212.01118'
file:
- access_level: open_access
checksum: b40ff456c19294adb5d9613fcfd751c6
content_type: application/pdf
creator: dernst
date_created: 2024-06-17T08:33:40Z
date_updated: 2024-06-17T08:33:40Z
file_id: '17150'
file_name: 2024_LIPICS_Kourimska.pdf
file_size: 1612558
relation: main_file
success: 1
file_date_updated: 2024-06-17T08:33:40Z
has_accepted_license: '1'
intvolume: ' 293'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '788183'
name: Alpha Shape Theory Extended
- _id: 268116B8-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z00342
name: Mathematics, Computer Science
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I02979-N35
name: Persistence and stability of geometric complexes
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: fc390959-9c52-11eb-aca3-afa58bd282b2
grant_number: M03073
name: Learning and triangulating manifolds via collapses
publication: 40th International Symposium on Computational Geometry
publication_identifier:
isbn:
- '9783959773164'
issn:
- 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: The medial axis of any closed bounded set Is Lipschitz stable with respect
to the Hausdorff distance Under ambient diffeomorphisms
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 293
year: '2024'
...
---
_id: '17145'
abstract:
- lang: eng
text: Grid peeling is the process of repeatedly removing the convex hull vertices
of the grid points that lie inside a given convex curve. It has been conjectured
that, for a more and more refined grid, grid peeling converges to a continuous
process, the affine curve-shortening flow, which deforms the curve based on the
curvature. We prove this conjecture for one class of curves, parabolas with a
vertical axis, and we determine the value of the constant factor in the formula
that relates the two processes.
acknowledgement: Part of this work was done while G.R. enjoyed the hospitality of
the Institute of Science and Technology Austria (ISTA) as a visiting professor during
his sabbatical in the winter semester 2022/23.
alternative_title:
- LIPIcs
article_number: '76'
article_processing_charge: No
arxiv: 1
author:
- first_name: Günter
full_name: Rote, Günter
last_name: Rote
- first_name: Moritz
full_name: Rüber, Moritz
last_name: Rüber
- first_name: Morteza
full_name: Saghafian, Morteza
id: f86f7148-b140-11ec-9577-95435b8df824
last_name: Saghafian
citation:
ama: 'Rote G, Rüber M, Saghafian M. Grid peeling of parabolas. In: 40th International
Symposium on Computational Geometry. Vol 293. Schloss Dagstuhl - Leibniz-Zentrum
für Informatik; 2024. doi:10.4230/LIPIcs.SoCG.2024.76'
apa: 'Rote, G., Rüber, M., & Saghafian, M. (2024). Grid peeling of parabolas.
In 40th International Symposium on Computational Geometry (Vol. 293). Athens,
Greece: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.SoCG.2024.76'
chicago: Rote, Günter, Moritz Rüber, and Morteza Saghafian. “Grid Peeling of Parabolas.”
In 40th International Symposium on Computational Geometry, Vol. 293. Schloss
Dagstuhl - Leibniz-Zentrum für Informatik, 2024. https://doi.org/10.4230/LIPIcs.SoCG.2024.76.
ieee: G. Rote, M. Rüber, and M. Saghafian, “Grid peeling of parabolas,” in 40th
International Symposium on Computational Geometry, Athens, Greece, 2024, vol.
293.
ista: 'Rote G, Rüber M, Saghafian M. 2024. Grid peeling of parabolas. 40th International
Symposium on Computational Geometry. SoCG: Symposium on Computational Geometry,
LIPIcs, vol. 293, 76.'
mla: Rote, Günter, et al. “Grid Peeling of Parabolas.” 40th International Symposium
on Computational Geometry, vol. 293, 76, Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2024, doi:10.4230/LIPIcs.SoCG.2024.76.
short: G. Rote, M. Rüber, M. Saghafian, in:, 40th International Symposium on Computational
Geometry, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2024.
conference:
end_date: 2024-06-14
location: Athens, Greece
name: 'SoCG: Symposium on Computational Geometry'
start_date: 2024-06-11
date_created: 2024-06-16T22:01:06Z
date_published: 2024-06-01T00:00:00Z
date_updated: 2024-06-17T08:41:56Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.4230/LIPIcs.SoCG.2024.76
external_id:
arxiv:
- '2402.15787'
file:
- access_level: open_access
checksum: fbad1de06383a6b7e8a1cb3e8c7205ce
content_type: application/pdf
creator: dernst
date_created: 2024-06-17T08:40:04Z
date_updated: 2024-06-17T08:40:04Z
file_id: '17151'
file_name: 2024_LIPICS_Rote.pdf
file_size: 1430896
relation: main_file
success: 1
file_date_updated: 2024-06-17T08:40:04Z
has_accepted_license: '1'
intvolume: ' 293'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
publication: 40th International Symposium on Computational Geometry
publication_identifier:
isbn:
- '9783959773164'
issn:
- 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: Grid peeling of parabolas
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 293
year: '2024'
...
---
_id: '17146'
abstract:
- lang: eng
text: The Upper Bound Theorem for convex polytopes implies that the p-th Betti number
of the Čech complex of any set of N points in ℝ^d and any radius satisfies β_p
= O(N^m), with m = min{p+1, ⌈d/2⌉}. We construct sets in even and odd dimensions,
which prove that this upper bound is asymptotically tight. For example, we describe
a set of N = 2(n+1) points in ℝ³ and two radii such that the first Betti number
of the Čech complex at one radius is (n+1)² - 1, and the second Betti number of
the Čech complex at the other radius is n². In particular, there is an arrangement
of n contruent balls in ℝ³ that enclose a quadratic number of voids, which answers
a long-standing open question in computational geometry.
acknowledgement: "The first author is supported by the European Research Council (ERC),
grant no. 788183, and by the DFG Collaborative Research Center TRR 109, Austrian
Science Fund (FWF), grant no. {I 02979-N35.} The second author is supported by the
European Research Council (ERC), grant \"GeoScape\" and by the Hungarian Science
Foundation (NKFIH), grant K-131529. Both authors are supported by the Wittgenstein
Prize, Austrian Science Fund (FWF), grant no. Z 342-N31.\r\nThe authors thank Matt
Kahle for communicating the question about extremal Čech complexes, Ben Schweinhart
for early discussions on the linked circles construction in three dimensions, and
Gábor Tardos for helpful remarks and suggestions."
alternative_title:
- LIPIcs
article_number: '53'
article_processing_charge: No
arxiv: 1
author:
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
- first_name: János
full_name: Pach, János
id: E62E3130-B088-11EA-B919-BF823C25FEA4
last_name: Pach
citation:
ama: 'Edelsbrunner H, Pach J. Maximum Betti numbers of Čech complexes. In: 40th
International Symposium on Computational Geometry. Vol 293. Schloss Dagstuhl
- Leibniz-Zentrum für Informatik; 2024. doi:10.4230/LIPIcs.SoCG.2024.53'
apa: 'Edelsbrunner, H., & Pach, J. (2024). Maximum Betti numbers of Čech complexes.
In 40th International Symposium on Computational Geometry (Vol. 293). Athens,
Greece: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.SoCG.2024.53'
chicago: Edelsbrunner, Herbert, and János Pach. “Maximum Betti Numbers of Čech Complexes.”
In 40th International Symposium on Computational Geometry, Vol. 293. Schloss
Dagstuhl - Leibniz-Zentrum für Informatik, 2024. https://doi.org/10.4230/LIPIcs.SoCG.2024.53.
ieee: H. Edelsbrunner and J. Pach, “Maximum Betti numbers of Čech complexes,” in
40th International Symposium on Computational Geometry, Athens, Greece,
2024, vol. 293.
ista: 'Edelsbrunner H, Pach J. 2024. Maximum Betti numbers of Čech complexes. 40th
International Symposium on Computational Geometry. SoCG: Symposium on Computational
Geometry, LIPIcs, vol. 293, 53.'
mla: Edelsbrunner, Herbert, and János Pach. “Maximum Betti Numbers of Čech Complexes.”
40th International Symposium on Computational Geometry, vol. 293, 53, Schloss
Dagstuhl - Leibniz-Zentrum für Informatik, 2024, doi:10.4230/LIPIcs.SoCG.2024.53.
short: H. Edelsbrunner, J. Pach, in:, 40th International Symposium on Computational
Geometry, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2024.
conference:
end_date: 2024-06-14
location: Athens, Greece
name: 'SoCG: Symposium on Computational Geometry'
start_date: 2024-06-11
date_created: 2024-06-16T22:01:06Z
date_published: 2024-06-01T00:00:00Z
date_updated: 2025-12-01T15:19:20Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.4230/LIPIcs.SoCG.2024.53
ec_funded: 1
external_id:
arxiv:
- '2310.14801'
file:
- access_level: open_access
checksum: 5442d44fb89d77477a87668d6e61aac9
content_type: application/pdf
creator: dernst
date_created: 2024-06-17T08:46:33Z
date_updated: 2024-06-17T08:46:33Z
file_id: '17152'
file_name: 2024_LIPICS_Edelsbrunner.pdf
file_size: 766562
relation: main_file
success: 1
file_date_updated: 2024-06-17T08:46:33Z
has_accepted_license: '1'
intvolume: ' 293'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '788183'
name: Alpha Shape Theory Extended
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I02979-N35
name: Persistence and stability of geometric complexes
- _id: 268116B8-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z00342
name: Mathematics, Computer Science
publication: 40th International Symposium on Computational Geometry
publication_identifier:
isbn:
- '9783959773164'
issn:
- 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
related_material:
record:
- id: '20657'
relation: later_version
status: public
scopus_import: '1'
status: public
title: Maximum Betti numbers of Čech complexes
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 293
year: '2024'
...
---
OA_place: repository
OA_type: green
_id: '17147'
abstract:
- lang: eng
text: Efficient utilization of large-scale biobank data is crucial for inferring
the genetic basis of disease and predicting health outcomes from the DNA. Yet
we lack efficient, accurate methods that scale to data where electronic health
records are linked to whole genome sequence information. To address this issue,
our paper develops a new algorithmic paradigm based on Approximate Message Passing
(AMP), which is specifically tailored for genomic prediction and association testing.
Our method yields comparable out-of-sample prediction accuracy to the state of
the art on UK Biobank traits, whilst dramatically improving computational complexity,
with a 8x-speed up in the run time. In addition, AMP theory provides a joint association
testing framework, which outperforms the currently used REGENIE method, in roughly
a third of the compute time. This first, truly large-scale application of the
AMP framework lays the foundations for a far wider range of statistical analyses
for hundreds of millions of variables measured on millions of people.
acknowledged_ssus:
- _id: ScienComp
acknowledgement: "This work was supported by a Lopez-Loreta Prize to MM, an SNSF Eccellenza
Grant to MRR (PCEGP3-181181), and core funding from ISTA. The authors thank Philip
Schniter, Matthew Stephens and Pragya Sur for valuable suggestions on an early version
of the work. The authors acknowledge the participants and investigators of the UK
Biobank study. High-performance\r\ncomputing was supported by the Scientific Service
Units (SSU) of IST Austria through resources provided by Scientific Computing (SciComp)."
article_processing_charge: No
author:
- first_name: Al
full_name: Depope, Al
id: 0b77531d-dbcd-11ea-9d1d-a8eee0bf3830
last_name: Depope
- first_name: Marco
full_name: Mondelli, Marco
id: 27EB676C-8706-11E9-9510-7717E6697425
last_name: Mondelli
orcid: 0000-0002-3242-7020
- first_name: Matthew Richard
full_name: Robinson, Matthew Richard
id: E5D42276-F5DA-11E9-8E24-6303E6697425
last_name: Robinson
orcid: 0000-0001-8982-8813
citation:
ama: 'Depope A, Mondelli M, Robinson MR. Inference of genetic effects via approximate
message passing. In: 2024 IEEE International Conference on Acoustics, Speech,
and Signal Processing. IEEE; 2024:13151-13155. doi:10.1109/ICASSP48485.2024.10447198'
apa: 'Depope, A., Mondelli, M., & Robinson, M. R. (2024). Inference of genetic
effects via approximate message passing. In 2024 IEEE International Conference
on Acoustics, Speech, and Signal Processing (pp. 13151–13155). Seoul, Korea:
IEEE. https://doi.org/10.1109/ICASSP48485.2024.10447198'
chicago: Depope, Al, Marco Mondelli, and Matthew Richard Robinson. “Inference of
Genetic Effects via Approximate Message Passing.” In 2024 IEEE International
Conference on Acoustics, Speech, and Signal Processing, 13151–55. IEEE, 2024.
https://doi.org/10.1109/ICASSP48485.2024.10447198.
ieee: A. Depope, M. Mondelli, and M. R. Robinson, “Inference of genetic effects
via approximate message passing,” in 2024 IEEE International Conference on
Acoustics, Speech, and Signal Processing, Seoul, Korea, 2024, pp. 13151–13155.
ista: 'Depope A, Mondelli M, Robinson MR. 2024. Inference of genetic effects via
approximate message passing. 2024 IEEE International Conference on Acoustics,
Speech, and Signal Processing. ICASSP: International Conference on Acoustics,
Speech and Signal Processing, 13151–13155.'
mla: Depope, Al, et al. “Inference of Genetic Effects via Approximate Message Passing.”
2024 IEEE International Conference on Acoustics, Speech, and Signal Processing,
IEEE, 2024, pp. 13151–55, doi:10.1109/ICASSP48485.2024.10447198.
short: A. Depope, M. Mondelli, M.R. Robinson, in:, 2024 IEEE International Conference
on Acoustics, Speech, and Signal Processing, IEEE, 2024, pp. 13151–13155.
conference:
end_date: 2024-04-19
location: Seoul, Korea
name: 'ICASSP: International Conference on Acoustics, Speech and Signal Processing'
start_date: 2024-04-14
corr_author: '1'
date_created: 2024-06-16T22:01:07Z
date_published: 2024-04-19T00:00:00Z
date_updated: 2025-11-05T07:21:31Z
day: '19'
department:
- _id: MaMo
- _id: MaRo
doi: 10.1109/ICASSP48485.2024.10447198
external_id:
isi:
- '001396233806078'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://openreview.net/forum?id=aQYCDxfZV0
month: '04'
oa: 1
oa_version: Submitted Version
page: 13151-13155
project:
- _id: 059876FA-7A3F-11EA-A408-12923DDC885E
name: Prix Lopez-Loretta 2019 - Marco Mondelli
- _id: 9B8D11D6-BA93-11EA-9121-9846C619BF3A
grant_number: PCEGP3_181181
name: Improving estimation and prediction of common complex disease risk
publication: 2024 IEEE International Conference on Acoustics, Speech, and Signal Processing
publication_identifier:
isbn:
- '9798350344851'
issn:
- 1520-6149
publication_status: published
publisher: IEEE
quality_controlled: '1'
scopus_import: '1'
status: public
title: Inference of genetic effects via approximate message passing
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
_id: '17161'
abstract:
- lang: eng
text: Dynamic processes in molecules can occur on a wide range of timescales, and
it is important to understand which timescales of motion contribute to different
parameters used in dynamics measurements. For spin relaxation, this can easily
be understood from the sampling frequencies of the spectral-density function by
different relaxation-rate constants. In addition to data from relaxation measurements,
determining dynamically averaged anisotropic interactions in magic-angle spinning
(MAS) solid-state NMR allows for better quantification of the amplitude of molecular
motion. For partially averaged anisotropic interactions, the relevant timescales
of motion are not so clearly defined. Whether the averaging depends on the experimental
methods (e.g., pulse sequences) or conditions (e.g., MAS frequency, magnitude
of anisotropic interaction, radio-frequency field amplitudes) is not fully understood.
To investigate these questions, we performed numerical simulations of dynamic
systems based on the stochastic Liouville equation using several experiments for
recoupling the dipolar coupling, chemical-shift anisotropy or quadrupolar coupling.
As described in the literature, the transition between slow motion, where parameters
characterizing the anisotropic interaction are not averaged, and fast motion,
where the tensors are averaged leading to a scaled anisotropic quantity, occurs
over a window of motional rate constants that depends mainly on the strength of
the interaction. This transition region can span 2 orders of magnitude in exchange-rate
constants (typically in the microsecond range) but depends only marginally on
the employed recoupling scheme or sample spinning frequency. The transition region
often coincides with a fast relaxation of coherences, making precise quantitative
measurements difficult. Residual couplings in off-magic-angle experiments, however,
average over longer timescales of motion. While in principle one may gain information
on the timescales of motion from the transition area, extracting such information
is hampered by low signal-to-noise ratio in experimental spectra due to fast relaxation
that occurs in the same region.
acknowledgement: "We would like to thank Kay Saalwächter for pointing out important
aspects of the intermediate regime during the open review process. Lea Marie Becker
is recipient of a DOC fellowship of the Austrian Academy of Sciences at the Institute
of Science and Technology Austria.\r\nThis research has been supported by the Österreichischen
Akademie der Wissenschaften (grant no. PR10660EAW01) and the Schweizerischer Nationalfonds
zur Förderung der Wissenschaftlichen Forschung (grant nos. 200020_188988 and 200020_219375)."
article_processing_charge: Yes
article_type: original
author:
- first_name: Kathrin
full_name: Aebischer, Kathrin
last_name: Aebischer
- first_name: Lea Marie
full_name: Becker, Lea Marie
id: 36336939-eb97-11eb-a6c2-c83f1214ca79
last_name: Becker
orcid: 0000-0002-6401-5151
- first_name: Paul
full_name: Schanda, Paul
id: 7B541462-FAF6-11E9-A490-E8DFE5697425
last_name: Schanda
orcid: 0000-0002-9350-7606
- first_name: Matthias
full_name: Ernst, Matthias
last_name: Ernst
citation:
ama: Aebischer K, Becker LM, Schanda P, Ernst M. Evaluating the motional timescales
contributing to averaged anisotropic interactions in MAS solid-state NMR. Magnetic
Resonance. 2024;5(1):69-86. doi:10.5194/mr-5-69-2024
apa: Aebischer, K., Becker, L. M., Schanda, P., & Ernst, M. (2024). Evaluating
the motional timescales contributing to averaged anisotropic interactions in MAS
solid-state NMR. Magnetic Resonance. Copernicus Publications. https://doi.org/10.5194/mr-5-69-2024
chicago: Aebischer, Kathrin, Lea Marie Becker, Paul Schanda, and Matthias Ernst.
“Evaluating the Motional Timescales Contributing to Averaged Anisotropic Interactions
in MAS Solid-State NMR.” Magnetic Resonance. Copernicus Publications, 2024.
https://doi.org/10.5194/mr-5-69-2024.
ieee: K. Aebischer, L. M. Becker, P. Schanda, and M. Ernst, “Evaluating the motional
timescales contributing to averaged anisotropic interactions in MAS solid-state
NMR,” Magnetic Resonance, vol. 5, no. 1. Copernicus Publications, pp. 69–86,
2024.
ista: Aebischer K, Becker LM, Schanda P, Ernst M. 2024. Evaluating the motional
timescales contributing to averaged anisotropic interactions in MAS solid-state
NMR. Magnetic Resonance. 5(1), 69–86.
mla: Aebischer, Kathrin, et al. “Evaluating the Motional Timescales Contributing
to Averaged Anisotropic Interactions in MAS Solid-State NMR.” Magnetic Resonance,
vol. 5, no. 1, Copernicus Publications, 2024, pp. 69–86, doi:10.5194/mr-5-69-2024.
short: K. Aebischer, L.M. Becker, P. Schanda, M. Ernst, Magnetic Resonance 5 (2024)
69–86.
date_created: 2024-06-23T22:01:02Z
date_published: 2024-06-11T00:00:00Z
date_updated: 2025-06-11T13:26:12Z
day: '11'
ddc:
- '530'
department:
- _id: PaSc
doi: 10.5194/mr-5-69-2024
external_id:
pmid:
- '40384772'
file:
- access_level: open_access
checksum: d01074f6919387fcaf8c9ebed320ccae
content_type: application/pdf
creator: dernst
date_created: 2024-06-27T06:42:55Z
date_updated: 2024-06-27T06:42:55Z
file_id: '17181'
file_name: 2024_MagneticResonance_Aebischer.pdf
file_size: 6736194
relation: main_file
success: 1
file_date_updated: 2024-06-27T06:42:55Z
has_accepted_license: '1'
intvolume: ' 5'
issue: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 69-86
pmid: 1
project:
- _id: 7be609c4-9f16-11ee-852c-85015ce2b9b0
grant_number: '26777'
name: Exploring protein dynamics by solid-state MAS NMR through specific labeling
approaches
publication: Magnetic Resonance
publication_identifier:
eissn:
- 2699-0016
publication_status: published
publisher: Copernicus Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: Evaluating the motional timescales contributing to averaged anisotropic interactions
in MAS solid-state NMR
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2024'
...
---
_id: '17162'
abstract:
- lang: eng
text: "Cost analysis, also known as resource usage analysis, is the task of finding
bounds on the total cost of a program and is a well-studied problem in static
analysis. In this work, we consider two classical quantitative problems in cost
analysis for probabilistic programs. The first problem is to find a bound on the
expected total cost of the program. This is a natural measure for the resource
usage of the program and can also be directly applied to average-case runtime
analysis. The second problem asks for a tail bound, i.e. given a threshold t
the goal is to find a probability bound p such that ℙ[total cost ≥ t] ≤ p. Intuitively,
given a threshold t on the resource, the problem is to find the likelihood that
the total cost exceeds this threshold.\r\nFirst, for expectation bounds, a major
obstacle in previous works on cost analysis is that they can handle only non-negative
costs or bounded variable updates. In contrast, we provide a new variant of the
standard notion of cost martingales, that allows us to find expectation bounds
for a class of programs with general positive or negative costs and no restriction
on the variable updates. More specifically, our approach is applicable as long
as there is a lower bound on the total cost incurred along every path.\r\nSecond,
for tail bounds, all previous methods are limited to programs in which the expected
total cost is finite. In contrast, we present a novel approach, based on a combination
of our martingale-based method for expectation bounds with a quantitative safety
analysis, to obtain a solution to the tail bound problem that is applicable even
to programs with infinite expected cost. Specifically, this allows us to obtain
runtime tail bounds for programs that do not terminate almost-surely.\r\nIn summary,
we provide a novel combination of martingale-based cost analysis and quantitative
safety analysis that is able to find expectation and tail cost bounds for probabilistic
programs, without the restrictions of non-negative costs, bounded updates, or
finiteness of the expected total cost. Finally, we provide experimental results
showcasing that our approach can solve instances that were beyond the reach of
previous methods."
acknowledgement: "This work was supported in part by the European Research Council
(ERC) under Grant No. 863818\r\n(ForM-SMArt) and the Hong Kong Research Grants Council
under ECS Project No. 26208122."
article_number: '107'
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Amir Kafshdar
full_name: Goharshady, Amir Kafshdar
id: 391365CE-F248-11E8-B48F-1D18A9856A87
last_name: Goharshady
orcid: 0000-0003-1702-6584
- first_name: Tobias
full_name: Meggendorfer, Tobias
id: b21b0c15-30a2-11eb-80dc-f13ca25802e1
last_name: Meggendorfer
orcid: 0000-0002-1712-2165
- first_name: Dorde
full_name: Zikelic, Dorde
id: 294AA7A6-F248-11E8-B48F-1D18A9856A87
last_name: Zikelic
orcid: 0000-0002-4681-1699
citation:
ama: Chatterjee K, Goharshady AK, Meggendorfer T, Zikelic D. Quantitative bounds
on resource usage of probabilistic programs. Proceedings of the ACM on Programming
Languages. 2024;8(OOPSLA1). doi:10.1145/3649824
apa: Chatterjee, K., Goharshady, A. K., Meggendorfer, T., & Zikelic, D. (2024).
Quantitative bounds on resource usage of probabilistic programs. Proceedings
of the ACM on Programming Languages. Association for Computing Machinery.
https://doi.org/10.1145/3649824
chicago: Chatterjee, Krishnendu, Amir Kafshdar Goharshady, Tobias Meggendorfer,
and Dorde Zikelic. “Quantitative Bounds on Resource Usage of Probabilistic Programs.”
Proceedings of the ACM on Programming Languages. Association for Computing
Machinery, 2024. https://doi.org/10.1145/3649824.
ieee: K. Chatterjee, A. K. Goharshady, T. Meggendorfer, and D. Zikelic, “Quantitative
bounds on resource usage of probabilistic programs,” Proceedings of the ACM
on Programming Languages, vol. 8, no. OOPSLA1. Association for Computing Machinery,
2024.
ista: Chatterjee K, Goharshady AK, Meggendorfer T, Zikelic D. 2024. Quantitative
bounds on resource usage of probabilistic programs. Proceedings of the ACM on
Programming Languages. 8(OOPSLA1), 107.
mla: Chatterjee, Krishnendu, et al. “Quantitative Bounds on Resource Usage of Probabilistic
Programs.” Proceedings of the ACM on Programming Languages, vol. 8, no.
OOPSLA1, 107, Association for Computing Machinery, 2024, doi:10.1145/3649824.
short: K. Chatterjee, A.K. Goharshady, T. Meggendorfer, D. Zikelic, Proceedings
of the ACM on Programming Languages 8 (2024).
date_created: 2024-06-23T22:01:02Z
date_published: 2024-04-29T00:00:00Z
date_updated: 2025-04-14T07:52:47Z
day: '29'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.1145/3649824
ec_funded: 1
file:
- access_level: open_access
checksum: 9243ded966f71df1572be5466019be5c
content_type: application/pdf
creator: dernst
date_created: 2024-06-27T07:48:16Z
date_updated: 2024-06-27T07:48:16Z
file_id: '17182'
file_name: 2024_ProcACMProgLanguage_Chatterjee.pdf
file_size: 413096
relation: main_file
success: 1
file_date_updated: 2024-06-27T07:48:16Z
has_accepted_license: '1'
intvolume: ' 8'
issue: OOPSLA1
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
project:
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
call_identifier: H2020
grant_number: '863818'
name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
publication: Proceedings of the ACM on Programming Languages
publication_identifier:
eissn:
- 2475-1421
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: Quantitative bounds on resource usage of probabilistic programs
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2024'
...
---
_id: '17170'
abstract:
- lang: eng
text: "In this article we extend and strengthen the seminal work by Niyogi, Smale,
and Weinberger on the learning of the homotopy type from a sample of an underlying
space. In their work, Niyogi, Smale, and Weinberger studied samples of C² manifolds
with positive reach embedded in ℝ^d. We extend their results in the following
ways: - As the ambient space we consider both ℝ^d and Riemannian manifolds with
lower bounded sectional curvature. - In both types of ambient spaces, we study
sets of positive reach - a significantly more general setting than C² manifolds
- as well as general manifolds of positive reach. - The sample P of a set (or
a manifold) \U0001D4AE of positive reach may be noisy. We work with two one-sided
Hausdorff distances - ε and δ - between P and \U0001D4AE. We provide tight bounds
in terms of ε and δ, that guarantee that there exists a parameter r such that
the union of balls of radius r centred at the sample P deformation-retracts to
\U0001D4AE. We exhibit their tightness by an explicit construction. We carefully
distinguish the roles of δ and ε. This is not only essential to achieve tight
bounds, but also sensible in practical situations, since it allows one to adapt
the bound according to sample density and the amount of noise present in the sample
separately."
acknowledgement: "This research has been supported by the European Research Council
(ERC), grant No. 788183, by the Wittgenstein Prize, Austrian Science Fund (FWF),
grant No. Z 342-N31, and by the DFG Collaborative Research Center TRR 109, Austrian
Science Fund (FWF), grant No. I 02979-N35.\r\nWintraecken, Mathijs: Supported by
the European Union’s Horizon 2020 research and innovation programme under the Marie
Skłodowska-Curie grant agreement No. 754411, the Austrian science fund (FWF) grant
No. M-3073, and the welcome package from IDEX of the Université Côte d'Azur."
alternative_title:
- LIPIcs
article_processing_charge: No
arxiv: 1
author:
- first_name: Dominique
full_name: Attali, Dominique
last_name: Attali
- first_name: Hana
full_name: Kourimska, Hana
id: D9B8E14C-3C26-11EA-98F5-1F833DDC885E
last_name: Kourimska
orcid: 0000-0001-7841-0091
- first_name: Christopher D
full_name: Fillmore, Christopher D
id: 35638A5C-AAC7-11E9-B0BF-5503E6697425
last_name: Fillmore
- first_name: Ishika
full_name: Ghosh, Ishika
id: ee449b28-344d-11ef-a6d5-9ca430e9e9ff
last_name: Ghosh
- first_name: André
full_name: Lieutier, André
last_name: Lieutier
- first_name: Elizabeth R
full_name: Stephenson, Elizabeth R
id: 2D04F932-F248-11E8-B48F-1D18A9856A87
last_name: Stephenson
orcid: 0000-0002-6862-208X
- first_name: Mathijs
full_name: Wintraecken, Mathijs
id: 307CFBC8-F248-11E8-B48F-1D18A9856A87
last_name: Wintraecken
orcid: 0000-0002-7472-2220
citation:
ama: 'Attali D, Kourimska H, Fillmore CD, et al. Tight bounds for the learning of
homotopy à la Niyogi, Smale, and Weinberger for subsets of euclidean spaces and
of Riemannian manifolds. In: 40th International Symposium on Computational
Geometry. Vol 293. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2024:11:1-11:19.
doi:10.4230/LIPIcs.SoCG.2024.11'
apa: 'Attali, D., Kourimska, H., Fillmore, C. D., Ghosh, I., Lieutier, A., Stephenson,
E. R., & Wintraecken, M. (2024). Tight bounds for the learning of homotopy
à la Niyogi, Smale, and Weinberger for subsets of euclidean spaces and of Riemannian
manifolds. In 40th International Symposium on Computational Geometry (Vol.
293, p. 11:1-11:19). Athens, Greece: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.
https://doi.org/10.4230/LIPIcs.SoCG.2024.11'
chicago: Attali, Dominique, Hana Kourimska, Christopher D Fillmore, Ishika Ghosh,
André Lieutier, Elizabeth R Stephenson, and Mathijs Wintraecken. “Tight Bounds
for the Learning of Homotopy à La Niyogi, Smale, and Weinberger for Subsets of
Euclidean Spaces and of Riemannian Manifolds.” In 40th International Symposium
on Computational Geometry, 293:11:1-11:19. Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2024. https://doi.org/10.4230/LIPIcs.SoCG.2024.11.
ieee: D. Attali et al., “Tight bounds for the learning of homotopy à la Niyogi,
Smale, and Weinberger for subsets of euclidean spaces and of Riemannian manifolds,”
in 40th International Symposium on Computational Geometry, Athens, Greece,
2024, vol. 293, p. 11:1-11:19.
ista: 'Attali D, Kourimska H, Fillmore CD, Ghosh I, Lieutier A, Stephenson ER, Wintraecken
M. 2024. Tight bounds for the learning of homotopy à la Niyogi, Smale, and Weinberger
for subsets of euclidean spaces and of Riemannian manifolds. 40th International
Symposium on Computational Geometry. SoCG: Symposium on Computational Geometry,
LIPIcs, vol. 293, 11:1-11:19.'
mla: Attali, Dominique, et al. “Tight Bounds for the Learning of Homotopy à La Niyogi,
Smale, and Weinberger for Subsets of Euclidean Spaces and of Riemannian Manifolds.”
40th International Symposium on Computational Geometry, vol. 293, Schloss
Dagstuhl - Leibniz-Zentrum für Informatik, 2024, p. 11:1-11:19, doi:10.4230/LIPIcs.SoCG.2024.11.
short: D. Attali, H. Kourimska, C.D. Fillmore, I. Ghosh, A. Lieutier, E.R. Stephenson,
M. Wintraecken, in:, 40th International Symposium on Computational Geometry, Schloss
Dagstuhl - Leibniz-Zentrum für Informatik, 2024, p. 11:1-11:19.
conference:
end_date: 2024-06-14
location: Athens, Greece
name: 'SoCG: Symposium on Computational Geometry'
start_date: 2024-06-11
date_created: 2024-06-25T11:45:58Z
date_published: 2024-06-06T00:00:00Z
date_updated: 2025-04-15T07:16:57Z
day: '06'
ddc:
- '516'
department:
- _id: GradSch
- _id: HeEd
doi: 10.4230/LIPIcs.SoCG.2024.11
ec_funded: 1
external_id:
arxiv:
- '2206.10485'
file:
- access_level: open_access
checksum: 6a2ddc8b51aa58f197a8b294750f1f8d
content_type: application/pdf
creator: cfillmor
date_created: 2024-06-25T11:47:26Z
date_updated: 2024-06-25T11:47:26Z
file_id: '17171'
file_name: LIPIcs.SoCG.2024.11.pdf
file_size: 20886142
relation: main_file
success: 1
file_date_updated: 2024-06-25T11:47:26Z
has_accepted_license: '1'
intvolume: ' 293'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 11:1-11:19
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '788183'
name: Alpha Shape Theory Extended
- _id: 268116B8-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z00342
name: Mathematics, Computer Science
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I02979-N35
name: Persistence and stability of geometric complexes
- _id: fc390959-9c52-11eb-aca3-afa58bd282b2
grant_number: M03073
name: Learning and triangulating manifolds via collapses
publication: 40th International Symposium on Computational Geometry
publication_identifier:
eissn:
- 1868-8969
isbn:
- '9783959773164'
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: Tight bounds for the learning of homotopy à la Niyogi, Smale, and Weinberger
for subsets of euclidean spaces and of Riemannian manifolds
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 293
year: '2024'
...