---
OA_type: closed access
_id: '17896'
abstract:
- lang: eng
  text: Broadband photodetectors that can decipher the wavelength (λ) and intensity
    (I) of an unknown incident light are urgently demanded. Photothermoelectric (PTE)
    detectors can achieve ultrabroadband photodetection surpassing the bandgap limitation;
    however, their practical application is severely hampered by the lack of deciphering
    strategy. In this work, we report a variable elimination method to decipher λ
    and I of the incident lights based on an integrated Ag2Se film-based PTE detector.
    Nanostructured Ag2Se films with controlled thickness are synthesized using an
    ion sputtering of Ag and a room-temperature selenization method and then assembled
    into a detector. Under identical illumination, Ag2Se films of different thicknesses
    produce varying output photothermal voltages, influenced by factors including
    λ. By establishing a direct relationship between the photothermal voltage and
    the absorption of Ag2Se films of varied thickness, we successfully eliminate variables
    independent of λ, thus determining λ. Subsequently, I is determined by the calibrated
    responsivity relationship using obtained λ. Our PTE detector achieves a broadband
    spectrum from 400 to 950 nm and high accuracy, with deviations as low as ∼2.63
    and ∼0.53% for deciphered λ and I, respectively. This method allows for self-powered
    broadband decipherable photodetection without a complex device architecture or
    computational assistance, which could boost the research enthusiasm and promote
    the commercialization of PTE broadband detectors.
acknowledgement: The authors appreciate the Analytical & Testing Center of Sichuan
  University and Ceshigo Research Service for their supports on material characterization.
  This study is financial supported by the fund of the State Key Laboratory of Solidification
  Processing in Northwestern Polytechnical University (NWPU, Grant SKLSP202315), the
  State Key Laboratory for Mechanical Behavior of Materials (Grant 20232509), and
  the International Scientific and Technological Innovation Cooperation of Sichuan
  Province (2024YFHZ0309).
article_processing_charge: No
article_type: original
author:
- first_name: Jiamin
  full_name: Zhou, Jiamin
  last_name: Zhou
- first_name: Shengduo
  full_name: Xu, Shengduo
  id: 12ab8624-4c8a-11ec-9e11-e1ac2438f22f
  last_name: Xu
- first_name: Yi
  full_name: Shuai, Yi
  last_name: Shuai
- first_name: Qiang
  full_name: Sun, Qiang
  last_name: Sun
- first_name: Huangshui
  full_name: Ma, Huangshui
  last_name: Ma
- first_name: Chao
  full_name: Wang, Chao
  last_name: Wang
- first_name: Haijuan
  full_name: Wu, Haijuan
  last_name: Wu
- first_name: Shanshan
  full_name: Tan, Shanshan
  last_name: Tan
- first_name: Zegao
  full_name: Wang, Zegao
  last_name: Wang
- first_name: Lei
  full_name: Yang, Lei
  last_name: Yang
citation:
  ama: Zhou J, Xu S, Shuai Y, et al. Decipher the wavelength and intensity using photothermoelectric
    detectors. <i>ACS Applied Materials and Interfaces</i>. 2024;16(36):47923-47930.
    doi:<a href="https://doi.org/10.1021/acsami.4c10489">10.1021/acsami.4c10489</a>
  apa: Zhou, J., Xu, S., Shuai, Y., Sun, Q., Ma, H., Wang, C., … Yang, L. (2024).
    Decipher the wavelength and intensity using photothermoelectric detectors. <i>ACS
    Applied Materials and Interfaces</i>. American Chemical Society. <a href="https://doi.org/10.1021/acsami.4c10489">https://doi.org/10.1021/acsami.4c10489</a>
  chicago: Zhou, Jiamin, Shengduo Xu, Yi Shuai, Qiang Sun, Huangshui Ma, Chao Wang,
    Haijuan Wu, Shanshan Tan, Zegao Wang, and Lei Yang. “Decipher the Wavelength and
    Intensity Using Photothermoelectric Detectors.” <i>ACS Applied Materials and Interfaces</i>.
    American Chemical Society, 2024. <a href="https://doi.org/10.1021/acsami.4c10489">https://doi.org/10.1021/acsami.4c10489</a>.
  ieee: J. Zhou <i>et al.</i>, “Decipher the wavelength and intensity using photothermoelectric
    detectors,” <i>ACS Applied Materials and Interfaces</i>, vol. 16, no. 36. American
    Chemical Society, pp. 47923–47930, 2024.
  ista: Zhou J, Xu S, Shuai Y, Sun Q, Ma H, Wang C, Wu H, Tan S, Wang Z, Yang L. 2024.
    Decipher the wavelength and intensity using photothermoelectric detectors. ACS
    Applied Materials and Interfaces. 16(36), 47923–47930.
  mla: Zhou, Jiamin, et al. “Decipher the Wavelength and Intensity Using Photothermoelectric
    Detectors.” <i>ACS Applied Materials and Interfaces</i>, vol. 16, no. 36, American
    Chemical Society, 2024, pp. 47923–30, doi:<a href="https://doi.org/10.1021/acsami.4c10489">10.1021/acsami.4c10489</a>.
  short: J. Zhou, S. Xu, Y. Shuai, Q. Sun, H. Ma, C. Wang, H. Wu, S. Tan, Z. Wang,
    L. Yang, ACS Applied Materials and Interfaces 16 (2024) 47923–47930.
date_created: 2024-09-08T22:01:13Z
date_published: 2024-09-11T00:00:00Z
date_updated: 2025-09-08T09:15:07Z
day: '11'
department:
- _id: MaIb
doi: 10.1021/acsami.4c10489
external_id:
  isi:
  - '001300770000001'
  pmid:
  - '39194354'
fulldoi: https://doi.org/10.1021/acsami.4c10489
intvolume: '        16'
isi: 1
issue: '36'
language:
- iso: eng
month: '09'
oa_version: None
page: 47923-47930
pmid: 1
publication: ACS Applied Materials and Interfaces
publication_identifier:
  eissn:
  - 1944-8252
  issn:
  - 1944-8244
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Decipher the wavelength and intensity using photothermoelectric detectors
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 16
year: '2024'
...
---
OA_type: closed access
_id: '17897'
abstract:
- lang: eng
  text: High-entropy materials (HEMs) offer a quasi-continuous spectrum of active
    sites and have generated great expectations in fields such as electrocatalysis
    and energy storage. Despite their potential, the complex composition and associated
    surface phenomena of HEMs pose challenges to their rational design and development.
    In this context, we have synthesized FeCoNiPdWP high entropy phosphide (HEP) nanoparticles
    using a low-temperature colloidal method, and explored their application as bifunctional
    electrocatalysts for the oxygen evolution and reduction reactions (OER/ORR). Our
    analysis provides a detailed understanding of the individual roles and transformations
    of each element during OER/ORR operation. Notably, the HEPs exhibit an exceptionally
    low OER overpotential of 227 mV at 10 mA cm−2, attributed to the reconstructed
    HEP surface into a FeCoNiPdW high entropy oxyhydroxide with high oxidation states
    of Fe, Co, and Ni serving as the active sites. Additionally, Pd and W play crucial
    roles in modulating the electronic structure to optimize the adsorption energy
    of oxygen intermediates. For the ORR, Pd emerges as the most active component.
    In the reconstructed catalyst, the strong d–d orbital coupling of especially Pd,
    Co, and W fine-tunes ORR electron transfer pathways, delivering an ORR half-wave
    potential of 0.81 V with a pure four-electron reduction mechanism. The practicality
    of these HEPs catalysts is showcased through the assembly of aqueous zinc–air
    batteries. These batteries demonstrate a superior specific capacity of 886 mA
    h gZn−1 and maintain excellent stability over more than 700 hours of continuous
    operation. Overall, this study not only elucidates the role of each element in
    HEMs but also establishes a foundational framework for the design and development
    of next-generation bifunctional oxygen catalysts, broadening the potential applications
    of these complex materials in advanced energy systems.
acknowledgement: This work was financially supported by the SyDEC at project from
  the Spanish MCIN/AEI/FEDER (PID2022-136883OB-C22) and Generalitat de Catalunya 2021SGR01581.
  J. N. H. and P. W. M. acknowledge support from the German Federal Ministry of Education
  and Research in the framework of the project “Catlab” (03EW0015A/B). L. Yang thanks
  the China Scholarship Council (CSC) for the scholarship support (202008130132).
  This work was supported by the European Union Horizon 2020 research and innovation
  program (No. 857470) and the European Regional Development Fund via the Foundation
  for Polish Science International Research Agenda PLUS program (No. MAB PLUS/2018/8).
  The publication was created within the framework of the project of the Minister
  of Science and Higher Education, Poland “Support for the activities of Centres of
  Excellence established in Poland under Horizon 2020” under contract no. MEiN/2023/DIR/3795.
  H. D. and S. M. thank the German Federal Ministry of Education and Research (BMBF)
  for supporting the Live-XAS project (05K22KE1) and the Deutsche Forschungsgemeinschaft
  (DFG, German Research Foundation) for support under Germany's Excellence Strategy
  – EXC 2008/1 – 390540038 – UniSysCat. The authors thank the Helmholtz-Zentrum Berlin
  (HZB) for beamtime allocation at the KMC-3 synchrotron beamline of the BESSY synchrotron
  in Berlin-Adlershof and Dr Ivo Zizak as well as Dr Michael Haumann for technical
  support.
article_processing_charge: No
article_type: original
author:
- first_name: Ren
  full_name: He, Ren
  last_name: He
- first_name: Shiqi
  full_name: Wang, Shiqi
  last_name: Wang
- first_name: Linlin
  full_name: Yang, Linlin
  last_name: Yang
- first_name: Sharona
  full_name: Horta, Sharona
  id: 03a7e858-01b1-11ec-8b71-99ae6c4a05bc
  last_name: Horta
- first_name: Yang
  full_name: Ding, Yang
  last_name: Ding
- first_name: Chong
  full_name: Di, Chong
  last_name: Di
- first_name: Xuesong
  full_name: Zhang, Xuesong
  last_name: Zhang
- first_name: Ying
  full_name: Xu, Ying
  last_name: Xu
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Yingtang
  full_name: Zhou, Yingtang
  last_name: Zhou
- first_name: Stefan
  full_name: Mebs, Stefan
  last_name: Mebs
- first_name: Holger
  full_name: Dau, Holger
  last_name: Dau
- first_name: Jan Niklas
  full_name: Hausmann, Jan Niklas
  last_name: Hausmann
- first_name: Wenyi
  full_name: Huo, Wenyi
  last_name: Huo
- first_name: Prashanth W.
  full_name: Menezes, Prashanth W.
  last_name: Menezes
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: He R, Wang S, Yang L, et al. Active site switching on high entropy phosphides
    as bifunctional oxygen electrocatalysts for rechargeable/robust Zn-air battery.
    <i>Energy and Environmental Science</i>. 2024;17(19):7193-7208. doi:<a href="https://doi.org/10.1039/d4ee01912a">10.1039/d4ee01912a</a>
  apa: He, R., Wang, S., Yang, L., Horta, S., Ding, Y., Di, C., … Cabot, A. (2024).
    Active site switching on high entropy phosphides as bifunctional oxygen electrocatalysts
    for rechargeable/robust Zn-air battery. <i>Energy and Environmental Science</i>.
    Royal Society of Chemistry. <a href="https://doi.org/10.1039/d4ee01912a">https://doi.org/10.1039/d4ee01912a</a>
  chicago: He, Ren, Shiqi Wang, Linlin Yang, Sharona Horta, Yang Ding, Chong Di, Xuesong
    Zhang, et al. “Active Site Switching on High Entropy Phosphides as Bifunctional
    Oxygen Electrocatalysts for Rechargeable/Robust Zn-Air Battery.” <i>Energy and
    Environmental Science</i>. Royal Society of Chemistry, 2024. <a href="https://doi.org/10.1039/d4ee01912a">https://doi.org/10.1039/d4ee01912a</a>.
  ieee: R. He <i>et al.</i>, “Active site switching on high entropy phosphides as
    bifunctional oxygen electrocatalysts for rechargeable/robust Zn-air battery,”
    <i>Energy and Environmental Science</i>, vol. 17, no. 19. Royal Society of Chemistry,
    pp. 7193–7208, 2024.
  ista: He R, Wang S, Yang L, Horta S, Ding Y, Di C, Zhang X, Xu Y, Ibáñez M, Zhou
    Y, Mebs S, Dau H, Hausmann JN, Huo W, Menezes PW, Cabot A. 2024. Active site switching
    on high entropy phosphides as bifunctional oxygen electrocatalysts for rechargeable/robust
    Zn-air battery. Energy and Environmental Science. 17(19), 7193–7208.
  mla: He, Ren, et al. “Active Site Switching on High Entropy Phosphides as Bifunctional
    Oxygen Electrocatalysts for Rechargeable/Robust Zn-Air Battery.” <i>Energy and
    Environmental Science</i>, vol. 17, no. 19, Royal Society of Chemistry, 2024,
    pp. 7193–208, doi:<a href="https://doi.org/10.1039/d4ee01912a">10.1039/d4ee01912a</a>.
  short: R. He, S. Wang, L. Yang, S. Horta, Y. Ding, C. Di, X. Zhang, Y. Xu, M. Ibáñez,
    Y. Zhou, S. Mebs, H. Dau, J.N. Hausmann, W. Huo, P.W. Menezes, A. Cabot, Energy
    and Environmental Science 17 (2024) 7193–7208.
date_created: 2024-09-08T22:01:13Z
date_published: 2024-08-22T00:00:00Z
date_updated: 2025-09-08T09:15:49Z
day: '22'
department:
- _id: MaIb
doi: 10.1039/d4ee01912a
external_id:
  isi:
  - '001298924700001'
fulldoi: https://doi.org/10.1039/d4ee01912a
intvolume: '        17'
isi: 1
issue: '19'
language:
- iso: eng
month: '08'
oa_version: None
page: 7193-7208
publication: Energy and Environmental Science
publication_identifier:
  eissn:
  - 1754-5706
  issn:
  - 1754-5692
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
scopus_import: '1'
status: public
title: Active site switching on high entropy phosphides as bifunctional oxygen electrocatalysts
  for rechargeable/robust Zn-air battery
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 17
year: '2024'
...
---
OA_place: publisher
OA_type: hybrid
_id: '18065'
abstract:
- lang: eng
  text: We establish a close connection between acceleration and dynamical degree
    for one-frequency quasi-periodic compact cocycles, by showing that two vectors
    derived separately from each coincide. Based on this, we provide a dynamical classification
    of one-frequency quasi-periodic  SO(3, R)-cocycles.
acknowledgement: "X. Hou is partially supported by National Natural Science Foundation
  of China (Grant \r\n12071083) and Funds for Distinguished Youths of Hubei Province
  of China (\r\n2019CFA680). Y. Pan is supported by ERC Advanced Grant (#885707).
  Q. Zhou is partially supported by National Key R&D Program of China (2020YFA0713300),
  NSFC grant (\r\n12071232) and Nankai Zhide Foundation."
article_number: '109943'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Xuanji
  full_name: Hou, Xuanji
  last_name: Hou
- first_name: Yi
  full_name: Pan, Yi
  id: 1e21c7f7-9070-11eb-847d-8b04c7169523
  last_name: Pan
- first_name: Qi
  full_name: Zhou, Qi
  last_name: Zhou
citation:
  ama: Hou X, Pan Y, Zhou Q. Dynamical classification of analytic one-frequency quasi-periodic
    SO(3,R)-cocycles. <i>Advances in Mathematics</i>. 2024;457. doi:<a href="https://doi.org/10.1016/j.aim.2024.109943">10.1016/j.aim.2024.109943</a>
  apa: Hou, X., Pan, Y., &#38; Zhou, Q. (2024). Dynamical classification of analytic
    one-frequency quasi-periodic SO(3,R)-cocycles. <i>Advances in Mathematics</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.aim.2024.109943">https://doi.org/10.1016/j.aim.2024.109943</a>
  chicago: Hou, Xuanji, Yi Pan, and Qi Zhou. “Dynamical Classification of Analytic
    One-Frequency Quasi-Periodic SO(3,R)-Cocycles.” <i>Advances in Mathematics</i>.
    Elsevier, 2024. <a href="https://doi.org/10.1016/j.aim.2024.109943">https://doi.org/10.1016/j.aim.2024.109943</a>.
  ieee: X. Hou, Y. Pan, and Q. Zhou, “Dynamical classification of analytic one-frequency
    quasi-periodic SO(3,R)-cocycles,” <i>Advances in Mathematics</i>, vol. 457. Elsevier,
    2024.
  ista: Hou X, Pan Y, Zhou Q. 2024. Dynamical classification of analytic one-frequency
    quasi-periodic SO(3,R)-cocycles. Advances in Mathematics. 457, 109943.
  mla: Hou, Xuanji, et al. “Dynamical Classification of Analytic One-Frequency Quasi-Periodic
    SO(3,R)-Cocycles.” <i>Advances in Mathematics</i>, vol. 457, 109943, Elsevier,
    2024, doi:<a href="https://doi.org/10.1016/j.aim.2024.109943">10.1016/j.aim.2024.109943</a>.
  short: X. Hou, Y. Pan, Q. Zhou, Advances in Mathematics 457 (2024).
corr_author: '1'
date_created: 2024-09-15T22:01:39Z
date_published: 2024-11-01T00:00:00Z
date_updated: 2025-09-08T09:44:19Z
day: '01'
ddc:
- '510'
department:
- _id: VaKa
doi: 10.1016/j.aim.2024.109943
ec_funded: 1
external_id:
  arxiv:
  - '2311.17537'
  isi:
  - '001315306500001'
file:
- access_level: open_access
  checksum: 1c80b844a91d93cf4799f4a65873b18d
  content_type: application/pdf
  creator: dernst
  date_created: 2025-01-13T08:29:27Z
  date_updated: 2025-01-13T08:29:27Z
  file_id: '18826'
  file_name: 2024_AdvancesMath_Hou.pdf
  file_size: 713659
  relation: main_file
  success: 1
file_date_updated: 2025-01-13T08:29:27Z
fulldoi: https://doi.org/10.1016/j.aim.2024.109943
has_accepted_license: '1'
intvolume: '       457'
isi: 1
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
project:
- _id: 9B8B92DE-BA93-11EA-9121-9846C619BF3A
  call_identifier: H2020
  grant_number: '885707'
  name: Spectral rigidity and integrability for billiards and geodesic flows
publication: Advances in Mathematics
publication_identifier:
  eissn:
  - 1090-2082
  issn:
  - 0001-8708
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Dynamical classification of analytic one-frequency quasi-periodic SO(3,R)-cocycles
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 457
year: '2024'
...
---
_id: '18066'
abstract:
- lang: eng
  text: 'Graph games lie at the algorithmic core of many automated design problems
    in computer science. These are games usually played between two players on a given
    graph, where the players keep moving a token along the edges according to pre-determined
    rules (turn-based, concurrent, etc.), and the winner is decided based on the infinite
    path (aka play) traversed by the token from a given initial position. In bidding
    games, the players initially get some monetary budgets which they need to use
    to bid for the privilege of moving the token at each step. Each round of bidding
    affects the players'' available budgets, which is the only form of update that
    the budgets experience. We introduce bidding games with charging where the players
    can additionally improve their budgets during the game by collecting vertex-dependent
    monetary rewards, aka the "charges." Unlike traditional bidding games (where all
    charges are zero), bidding games with charging allow non-trivial recurrent behaviors.
    For example, a reachability objective may require multiple detours to vertices
    with high charges to earn additional budget. We show that, nonetheless, the central
    property of traditional bidding games generalizes to bidding games with charging:
    For each vertex there exists a threshold ratio, which is the necessary and sufficient
    fraction of the total budget for winning the game from that vertex. While the
    thresholds of traditional bidding games correspond to unique fixed points of linear
    systems of equations, in games with charging, these fixed points are no longer
    unique. This significantly complicates the proof of existence and the algorithmic
    computation of thresholds for infinite-duration objectives. We also provide the
    lower complexity bounds for computing thresholds for Rabin and Streett objectives,
    which are the first known lower bounds in any form of bidding games (with or without
    charging), and we solve the following repair problem for safety and reachability
    games that have unsatisfiable objectives: Can we distribute a given amount of
    charge to the players in a way such that the objective can be satisfied?'
acknowledgement: This work was supported in part by the ERC projects ERC-2020-AdG
  101020093 and CoG 863818 (ForM-SMArt) and by ISF grant no. 1679/21.
alternative_title:
- LIPIcs
article_number: '8'
article_processing_charge: Yes
arxiv: 1
author:
- first_name: Guy
  full_name: Avni, Guy
  id: 463C8BC2-F248-11E8-B48F-1D18A9856A87
  last_name: Avni
  orcid: 0000-0001-5588-8287
- first_name: Ehsan Kafshdar
  full_name: Goharshady, Ehsan Kafshdar
  last_name: Goharshady
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Kaushik
  full_name: Mallik, Kaushik
  id: 0834ff3c-6d72-11ec-94e0-b5b0a4fb8598
  last_name: Mallik
  orcid: 0000-0001-9864-7475
citation:
  ama: 'Avni G, Goharshady EK, Henzinger TA, Mallik K. Bidding games with charging.
    In: <i>35th International Conference on Concurrency Theory</i>. Vol 311. Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik; 2024. doi:<a href="https://doi.org/10.4230/LIPIcs.CONCUR.2024.8">10.4230/LIPIcs.CONCUR.2024.8</a>'
  apa: 'Avni, G., Goharshady, E. K., Henzinger, T. A., &#38; Mallik, K. (2024). Bidding
    games with charging. In <i>35th International Conference on Concurrency Theory</i>
    (Vol. 311). Calgary, Canada: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.
    <a href="https://doi.org/10.4230/LIPIcs.CONCUR.2024.8">https://doi.org/10.4230/LIPIcs.CONCUR.2024.8</a>'
  chicago: Avni, Guy, Ehsan Kafshdar Goharshady, Thomas A Henzinger, and Kaushik Mallik.
    “Bidding Games with Charging.” In <i>35th International Conference on Concurrency
    Theory</i>, Vol. 311. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2024.
    <a href="https://doi.org/10.4230/LIPIcs.CONCUR.2024.8">https://doi.org/10.4230/LIPIcs.CONCUR.2024.8</a>.
  ieee: G. Avni, E. K. Goharshady, T. A. Henzinger, and K. Mallik, “Bidding games
    with charging,” in <i>35th International Conference on Concurrency Theory</i>,
    Calgary, Canada, 2024, vol. 311.
  ista: 'Avni G, Goharshady EK, Henzinger TA, Mallik K. 2024. Bidding games with charging.
    35th International Conference on Concurrency Theory. CONCUR: Conference on Concurrency
    Theory, LIPIcs, vol. 311, 8.'
  mla: Avni, Guy, et al. “Bidding Games with Charging.” <i>35th International Conference
    on Concurrency Theory</i>, vol. 311, 8, Schloss Dagstuhl - Leibniz-Zentrum für
    Informatik, 2024, doi:<a href="https://doi.org/10.4230/LIPIcs.CONCUR.2024.8">10.4230/LIPIcs.CONCUR.2024.8</a>.
  short: G. Avni, E.K. Goharshady, T.A. Henzinger, K. Mallik, in:, 35th International
    Conference on Concurrency Theory, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2024.
conference:
  end_date: 2024-09-13
  location: Calgary, Canada
  name: 'CONCUR: Conference on Concurrency Theory'
  start_date: 2024-09-09
corr_author: '1'
date_created: 2024-09-15T22:01:39Z
date_published: 2024-09-01T00:00:00Z
date_updated: 2025-12-02T13:46:11Z
day: '01'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.4230/LIPIcs.CONCUR.2024.8
ec_funded: 1
external_id:
  arxiv:
  - '2407.06288'
  isi:
  - '001556847400008'
file:
- access_level: open_access
  checksum: cb6f2254b84922cd7bf224f550b73f4a
  content_type: application/pdf
  creator: dernst
  date_created: 2024-09-17T09:35:03Z
  date_updated: 2024-09-17T09:35:03Z
  file_id: '18083'
  file_name: 2024_LIPICS_Avni.pdf
  file_size: 854430
  relation: main_file
  success: 1
file_date_updated: 2024-09-17T09:35:03Z
fulldoi: https://doi.org/10.4230/LIPIcs.CONCUR.2024.8
has_accepted_license: '1'
intvolume: '       311'
isi: 1
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '863818'
  name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
publication: 35th International Conference on Concurrency Theory
publication_identifier:
  isbn:
  - '9783959773393'
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: Bidding games with charging
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 311
year: '2024'
...
---
_id: '18067'
abstract:
- lang: eng
  text: "An automaton \U0001D49C is history-deterministic if its nondeterminism can
    be resolved on the fly, only using the prefix of the word read so far. This mild
    form of nondeterminism has attracted particular attention for its applications
    in synthesis problems. An automaton \U0001D49C is guidable with respect to a class
    C of automata if it can fairly simulate every automaton in C, whose language is
    contained in that of \U0001D49C. In other words, guidable automata are those for
    which inclusion and simulation coincide, making them particularly interesting
    for model-checking. We study the connection between these two notions, and specifically
    the question of when they coincide. For classes of automata on which they do,
    deciding guidability, an otherwise challenging decision problem, reduces to deciding
    history-determinism, a problem that is starting to be well-understood for many
    classes. We provide a selection of sufficient criteria for a class of automata
    to guarantee the coincidence of the notions, and use them to show that the notions
    coincide for the most common automata classes, among which are ω-regular automata
    and many infinite-state automata with safety and reachability acceptance conditions,
    including vector addition systems with states, one-counter nets, pushdown-, Parikh-,
    and timed-automata. We also demonstrate that history-determinism and guidability
    do not always coincide, for example, for the classes of timed automata with a
    fixed number of clocks."
acknowledgement: "Udi Boker: Israel Science Foundation grant 2410/22\r\nThomas A.
  Henzinger: ERC-2020-AdG 101020093 (VAMOS)\r\nKaroliina Lehtinen: ANR QUASY 23-CE48-0008-01\r\nAditya
  Prakash: Chancellors’ International Scholarship from the University of Warwick and
  Centre for Discrete Mathematics and Its Applications (DIMAP)"
alternative_title:
- LIPIcs
article_number: '12'
article_processing_charge: No
arxiv: 1
author:
- first_name: Udi
  full_name: Boker, Udi
  id: 31E297B6-F248-11E8-B48F-1D18A9856A87
  last_name: Boker
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Karoliina
  full_name: Lehtinen, Karoliina
  last_name: Lehtinen
- first_name: Aditya
  full_name: Prakash, Aditya
  last_name: Prakash
citation:
  ama: 'Boker U, Henzinger TA, Lehtinen K, Prakash A. History-determinism vs fair
    simulation. In: <i>35th International Conference on Concurrency Theory</i>. Vol
    311. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2024. doi:<a href="https://doi.org/10.4230/LIPIcs.CONCUR.2024.12">10.4230/LIPIcs.CONCUR.2024.12</a>'
  apa: 'Boker, U., Henzinger, T. A., Lehtinen, K., &#38; Prakash, A. (2024). History-determinism
    vs fair simulation. In <i>35th International Conference on Concurrency Theory</i>
    (Vol. 311). Calgary, Canada: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.
    <a href="https://doi.org/10.4230/LIPIcs.CONCUR.2024.12">https://doi.org/10.4230/LIPIcs.CONCUR.2024.12</a>'
  chicago: Boker, Udi, Thomas A Henzinger, Karoliina Lehtinen, and Aditya Prakash.
    “History-Determinism vs Fair Simulation.” In <i>35th International Conference
    on Concurrency Theory</i>, Vol. 311. Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2024. <a href="https://doi.org/10.4230/LIPIcs.CONCUR.2024.12">https://doi.org/10.4230/LIPIcs.CONCUR.2024.12</a>.
  ieee: U. Boker, T. A. Henzinger, K. Lehtinen, and A. Prakash, “History-determinism
    vs fair simulation,” in <i>35th International Conference on Concurrency Theory</i>,
    Calgary, Canada, 2024, vol. 311.
  ista: 'Boker U, Henzinger TA, Lehtinen K, Prakash A. 2024. History-determinism vs
    fair simulation. 35th International Conference on Concurrency Theory. CONCUR:
    Conference on Concurrency Theory, LIPIcs, vol. 311, 12.'
  mla: Boker, Udi, et al. “History-Determinism vs Fair Simulation.” <i>35th International
    Conference on Concurrency Theory</i>, vol. 311, 12, Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2024, doi:<a href="https://doi.org/10.4230/LIPIcs.CONCUR.2024.12">10.4230/LIPIcs.CONCUR.2024.12</a>.
  short: U. Boker, T.A. Henzinger, K. Lehtinen, A. Prakash, in:, 35th International
    Conference on Concurrency Theory, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2024.
conference:
  end_date: 2024-09-13
  location: Calgary, Canada
  name: 'CONCUR: Conference on Concurrency Theory'
  start_date: 2024-09-09
corr_author: '1'
date_created: 2024-09-15T22:01:40Z
date_published: 2024-09-01T00:00:00Z
date_updated: 2025-12-02T13:44:54Z
day: '01'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.4230/LIPIcs.CONCUR.2024.12
ec_funded: 1
external_id:
  arxiv:
  - '2407.08620'
  isi:
  - '001556847400012'
file:
- access_level: open_access
  checksum: 66db11ef8e600a434079c278050c3f09
  content_type: application/pdf
  creator: dernst
  date_created: 2024-09-17T07:31:18Z
  date_updated: 2024-09-17T07:31:18Z
  file_id: '18080'
  file_name: 2024_LIPICS_Boker.pdf
  file_size: 766902
  relation: main_file
  success: 1
file_date_updated: 2024-09-17T07:31:18Z
fulldoi: https://doi.org/10.4230/LIPIcs.CONCUR.2024.12
has_accepted_license: '1'
intvolume: '       311'
isi: 1
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
publication: 35th International Conference on Concurrency Theory
publication_identifier:
  isbn:
  - '9783959773393'
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: History-determinism vs fair simulation
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 311
year: '2024'
...
---
OA_place: publisher
OA_type: gold
_id: '18068'
abstract:
- lang: eng
  text: "We study the following refinement relation between nondeterministic state-transition
    models: model ℬ strategically dominates model \U0001D49C iff every deterministic
    refinement of \U0001D49C is language contained in some deterministic refinement
    of ℬ. While language containment is trace inclusion, and the (fair) simulation
    preorder coincides with tree inclusion, strategic dominance falls strictly between
    the two and can be characterized as \"strategy inclusion\" between \U0001D49C
    and ℬ: every strategy that resolves the nondeterminism of \U0001D49C is dominated
    by a strategy that resolves the nondeterminism of ℬ. Strategic dominance can be
    checked in 2-ExpTime by a decidable first-order Presburger logic with quantification
    over words and strategies, called resolver logic. We give several other applications
    of resolver logic, including checking the co-safety, co-liveness, and history-determinism
    of boolean and quantitative automata, and checking the inclusion between hyperproperties
    that are specified by nondeterministic boolean and quantitative automata."
acknowledgement: This work was supported in part by the ERC-2020-AdG 101020093. N.
  Mazzocchi was affiliated with ISTA when this work was submitted for publication.
alternative_title:
- LIPIcs
article_number: '29'
article_processing_charge: Yes
arxiv: 1
author:
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Nicolas Adrien
  full_name: Mazzocchi, Nicolas Adrien
  id: b26baa86-3308-11ec-87b0-8990f34baa85
  last_name: Mazzocchi
- first_name: Naci E
  full_name: Sarac, Naci E
  id: 8C6B42F8-C8E6-11E9-A03A-F2DCE5697425
  last_name: Sarac
citation:
  ama: 'Henzinger TA, Mazzocchi NA, Sarac NE. Strategic dominance: A new preorder
    for nondeterministic processes. In: <i>35th International Conference on Concurrency
    Theory</i>. Vol 311. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2024.
    doi:<a href="https://doi.org/10.4230/LIPIcs.CONCUR.2024.29">10.4230/LIPIcs.CONCUR.2024.29</a>'
  apa: 'Henzinger, T. A., Mazzocchi, N. A., &#38; Sarac, N. E. (2024). Strategic dominance:
    A new preorder for nondeterministic processes. In <i>35th International Conference
    on Concurrency Theory</i> (Vol. 311). Calgary, Canada: Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik. <a href="https://doi.org/10.4230/LIPIcs.CONCUR.2024.29">https://doi.org/10.4230/LIPIcs.CONCUR.2024.29</a>'
  chicago: 'Henzinger, Thomas A, Nicolas Adrien Mazzocchi, and Naci E Sarac. “Strategic
    Dominance: A New Preorder for Nondeterministic Processes.” In <i>35th International
    Conference on Concurrency Theory</i>, Vol. 311. Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2024. <a href="https://doi.org/10.4230/LIPIcs.CONCUR.2024.29">https://doi.org/10.4230/LIPIcs.CONCUR.2024.29</a>.'
  ieee: 'T. A. Henzinger, N. A. Mazzocchi, and N. E. Sarac, “Strategic dominance:
    A new preorder for nondeterministic processes,” in <i>35th International Conference
    on Concurrency Theory</i>, Calgary, Canada, 2024, vol. 311.'
  ista: 'Henzinger TA, Mazzocchi NA, Sarac NE. 2024. Strategic dominance: A new preorder
    for nondeterministic processes. 35th International Conference on Concurrency Theory.
    CONCUR: Conference on Concurrency Theory, LIPIcs, vol. 311, 29.'
  mla: 'Henzinger, Thomas A., et al. “Strategic Dominance: A New Preorder for Nondeterministic
    Processes.” <i>35th International Conference on Concurrency Theory</i>, vol. 311,
    29, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2024, doi:<a href="https://doi.org/10.4230/LIPIcs.CONCUR.2024.29">10.4230/LIPIcs.CONCUR.2024.29</a>.'
  short: T.A. Henzinger, N.A. Mazzocchi, N.E. Sarac, in:, 35th International Conference
    on Concurrency Theory, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2024.
conference:
  end_date: 2024-09-13
  location: Calgary, Canada
  name: 'CONCUR: Conference on Concurrency Theory'
  start_date: 2024-09-09
corr_author: '1'
date_created: 2024-09-15T22:01:40Z
date_published: 2024-09-01T00:00:00Z
date_updated: 2025-12-02T13:45:38Z
day: '01'
ddc:
- '000'
department:
- _id: ToHe
- _id: GradSch
doi: 10.4230/LIPIcs.CONCUR.2024.29
ec_funded: 1
external_id:
  arxiv:
  - '2407.10473'
  isi:
  - '001556847400029'
file:
- access_level: open_access
  checksum: 555bd343e1fb38adeab8fc465ff4fad8
  content_type: application/pdf
  creator: dernst
  date_created: 2024-09-17T07:48:56Z
  date_updated: 2024-09-17T07:48:56Z
  file_id: '18081'
  file_name: 2024_LIPICS_Henzinger.pdf
  file_size: 964124
  relation: main_file
  success: 1
file_date_updated: 2024-09-17T07:48:56Z
fulldoi: https://doi.org/10.4230/LIPIcs.CONCUR.2024.29
has_accepted_license: '1'
intvolume: '       311'
isi: 1
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
publication: 35th International Conference on Concurrency Theory
publication_identifier:
  isbn:
  - '9783959773393'
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Strategic dominance: A new preorder for nondeterministic processes'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 311
year: '2024'
...
---
DOAJ_listed: '1'
_id: '18069'
abstract:
- lang: eng
  text: We present results from the JWST First Reionization Epoch Spectroscopically
    Complete Observations survey on the star-forming sequence (SFS) of galaxies at
    1.0 < z < 1.7, around the peak of the cosmic star formation history. Star formation
    rates (SFRs) are measured from the redshifted, relatively dust-insensitive Paschen-α
    emission line, and stellar mass measurements include the F444W (4.4 μm; rest-frame
    H) band. We find SFRs of galaxies with log(M*/M⊙) > 9.5 that are lower than found
    in many earlier studies by up to 0.6 dex, but in good agreement with recent results
    obtained with the Prospector fitting framework. The difference (log(SFR(Paα)-SFR(Prospector))
    is −0.09 ± 0.04 dex at 1010−11M⊙. We also measure the empirical relation between
    Paschen-α luminosity and rest-frame H-band magnitude and find that the scatter
    is only 0.04 dex lower than that of the SFR–M* relation and is much lower than
    the systematic differences among relations in the literature due to various methods
    of converting observed measurements to physical properties. We additionally identify
    examples of sources—that, with standard cutoffs via the UVJ diagram, would be
    deemed quiescent—with significant (log(sSFR)> −11 yr−1), typically extended, Paschen-α
    emission. Our results may be indicative of the potential unification of methods
    used to derive the SFS with careful selection of star-forming galaxies and independent
    SFR and stellar mass indicators.
acknowledgement: "The authors thank the anonymous referee whose comments and suggestions
  improved the quality of this work.\r\nThis work is based on observations made with
  the NASA/ESA/CSA James Webb Space Telescope. The data were obtained from the Mikulski
  Archive for Space Telescopes at the Space Telescope Science Institute, which is
  operated by the Association of Universities for Research in Astronomy, Inc., under
  NASA contract NAS 5-03127 for JWST. These observations are associated with program
  No. 1895.\r\nSupport for this work was provided by NASA through grant JWST-GO-01895
  awarded by the Space Telescope Science Institute, which is operated by the Association
  of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-26555.\r\nThis
  work has received funding from the Swiss State Secretariat for Education, Research,
  and Innovation (SERI) under contract No. MB22.00072, as well as from the Swiss National
  Science Foundation (SNSF) through project grant 200020_207349. The Cosmic Dawn Center
  (DAWN) is funded by the Danish National Research Foundation under grant No. 140.\r\nR.P.N.
  acknowledges funding from JWST programs GO-1933 and GO-2279. Support for this work
  was provided by NASA through the NASA Hubble Fellowship grant HST-HF2-51515.001-A
  awarded by the Space Telescope Science Institute, which is operated by the Association
  of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-26555\r\nCloud-based
  data processing and file storage for this work is provided by the AWS Cloud Credits
  for Research program.\r\nThis paper made use of several publicly available software
  packages. We thank the respective authors for sharing their work: IPython (Pérez
  & Granger 2007), matplotlib (Hunter 2007), seaborn (Waskom et al. 2018), NumPy (Harris
  et al. 2020), SciPy (Virtanen et al. 2020), jupyter (Kluyver et al. 2016), Astropy
  (Astropy Collaboration et al. 2013, 2018, 2022), grizli (Brammer 2018; Brammer et
  al. 2022), Prospector (Leja et al. 2019, 2017; Johnson et al. 2021), FSPS (Conroy
  et al. 2009a, 2010; Conroy & Gunn 2010a, 2010b; Foreman-Mackey et al. 2014), dynesty
  (Speagle 2020), EAZY (Brammer et al. 2008), Bagpipes (Carnall et al. 2018), and
  SExtractor (Bertin & Arnouts 1996)."
article_number: '156'
article_processing_charge: Yes
article_type: original
author:
- first_name: Chloe
  full_name: Neufeld, Chloe
  last_name: Neufeld
- first_name: Pieter
  full_name: Van Dokkum, Pieter
  last_name: Van Dokkum
- first_name: Yasmeen
  full_name: Asali, Yasmeen
  last_name: Asali
- first_name: Alba
  full_name: Covelo-Paz, Alba
  last_name: Covelo-Paz
- first_name: Joel
  full_name: Leja, Joel
  last_name: Leja
- first_name: Jamie
  full_name: Lin, Jamie
  last_name: Lin
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Pascal A.
  full_name: Oesch, Pascal A.
  last_name: Oesch
- first_name: Naveen A.
  full_name: Reddy, Naveen A.
  last_name: Reddy
- first_name: Irene
  full_name: Shivaei, Irene
  last_name: Shivaei
- first_name: Katherine E.
  full_name: Whitaker, Katherine E.
  last_name: Whitaker
- first_name: Stijn
  full_name: Wuyts, Stijn
  last_name: Wuyts
- first_name: Gabriel
  full_name: Brammer, Gabriel
  last_name: Brammer
- first_name: Danilo
  full_name: Marchesini, Danilo
  last_name: Marchesini
- first_name: Michael V.
  full_name: Maseda, Michael V.
  last_name: Maseda
- first_name: Rohan P.
  full_name: Naidu, Rohan P.
  last_name: Naidu
- first_name: Erica J.
  full_name: Nelson, Erica J.
  last_name: Nelson
- first_name: Anna
  full_name: Velichko, Anna
  last_name: Velichko
- first_name: Andrea
  full_name: Weibel, Andrea
  last_name: Weibel
- first_name: Mengyuan
  full_name: Xiao, Mengyuan
  last_name: Xiao
citation:
  ama: 'Neufeld C, Van Dokkum P, Asali Y, et al. FRESCO: The Paschen-α star-forming
    sequence at cosmic noon. <i>Astrophysical Journal</i>. 2024;972(2). doi:<a href="https://doi.org/10.3847/1538-4357/ad6158">10.3847/1538-4357/ad6158</a>'
  apa: 'Neufeld, C., Van Dokkum, P., Asali, Y., Covelo-Paz, A., Leja, J., Lin, J.,
    … Xiao, M. (2024). FRESCO: The Paschen-α star-forming sequence at cosmic noon.
    <i>Astrophysical Journal</i>. IOP Publishing. <a href="https://doi.org/10.3847/1538-4357/ad6158">https://doi.org/10.3847/1538-4357/ad6158</a>'
  chicago: 'Neufeld, Chloe, Pieter Van Dokkum, Yasmeen Asali, Alba Covelo-Paz, Joel
    Leja, Jamie Lin, Jorryt J Matthee, et al. “FRESCO: The Paschen-α Star-Forming
    Sequence at Cosmic Noon.” <i>Astrophysical Journal</i>. IOP Publishing, 2024.
    <a href="https://doi.org/10.3847/1538-4357/ad6158">https://doi.org/10.3847/1538-4357/ad6158</a>.'
  ieee: 'C. Neufeld <i>et al.</i>, “FRESCO: The Paschen-α star-forming sequence at
    cosmic noon,” <i>Astrophysical Journal</i>, vol. 972, no. 2. IOP Publishing, 2024.'
  ista: 'Neufeld C, Van Dokkum P, Asali Y, Covelo-Paz A, Leja J, Lin J, Matthee JJ,
    Oesch PA, Reddy NA, Shivaei I, Whitaker KE, Wuyts S, Brammer G, Marchesini D,
    Maseda MV, Naidu RP, Nelson EJ, Velichko A, Weibel A, Xiao M. 2024. FRESCO: The
    Paschen-α star-forming sequence at cosmic noon. Astrophysical Journal. 972(2),
    156.'
  mla: 'Neufeld, Chloe, et al. “FRESCO: The Paschen-α Star-Forming Sequence at Cosmic
    Noon.” <i>Astrophysical Journal</i>, vol. 972, no. 2, 156, IOP Publishing, 2024,
    doi:<a href="https://doi.org/10.3847/1538-4357/ad6158">10.3847/1538-4357/ad6158</a>.'
  short: C. Neufeld, P. Van Dokkum, Y. Asali, A. Covelo-Paz, J. Leja, J. Lin, J.J.
    Matthee, P.A. Oesch, N.A. Reddy, I. Shivaei, K.E. Whitaker, S. Wuyts, G. Brammer,
    D. Marchesini, M.V. Maseda, R.P. Naidu, E.J. Nelson, A. Velichko, A. Weibel, M.
    Xiao, Astrophysical Journal 972 (2024).
date_created: 2024-09-15T22:01:40Z
date_published: 2024-09-01T00:00:00Z
date_updated: 2025-09-08T09:43:41Z
day: '01'
ddc:
- '520'
department:
- _id: JoMa
doi: 10.3847/1538-4357/ad6158
external_id:
  isi:
  - '001305987600001'
file:
- access_level: open_access
  checksum: 754b58c1d79adb9670ca76fa8c20ab16
  content_type: application/pdf
  creator: dernst
  date_created: 2024-09-17T08:23:59Z
  date_updated: 2024-09-17T08:23:59Z
  file_id: '18082'
  file_name: 2024_AstrophysicalJourn_Neufeld.pdf
  file_size: 9960685
  relation: main_file
  success: 1
file_date_updated: 2024-09-17T08:23:59Z
fulldoi: https://doi.org/10.3847/1538-4357/ad6158
has_accepted_license: '1'
intvolume: '       972'
isi: 1
issue: '2'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
publication: Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'FRESCO: The Paschen-α star-forming sequence at cosmic noon'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 972
year: '2024'
...
---
OA_place: publisher
OA_type: gold
_id: '18073'
abstract:
- lang: eng
  text: Conserved signaling cascades monitor protein-folding homeostasis to ensure
    proper cellular function. One of the evolutionary conserved key players is IRE1,
    which maintains endoplasmic reticulum (ER) homeostasis through the unfolded protein
    response (UPR). Upon accumulation of misfolded proteins in the ER, IRE1 forms
    clusters on the ER membrane to initiate UPR signaling. What regulates IRE1 cluster
    formation is not fully understood. Here, we show that the ER lumenal domain (LD)
    of human IRE1α forms biomolecular condensates in vitro. IRE1α LD condensates were
    stabilized both by binding to unfolded polypeptides as well as by tethering to
    model membranes, suggesting their role in assembling IRE1α into signaling-competent
    stable clusters. Molecular dynamics simulations indicated that weak multivalent
    interactions drive IRE1α LD clustering. Mutagenesis experiments identified disordered
    regions in IRE1α LD to control its clustering in vitro and in cells. Importantly,
    dysregulated clustering of IRE1α mutants led to defects in IRE1α signaling. Our
    results revealed that disordered regions in IRE1α LD control its clustering and
    suggest their role as a common strategy in regulating protein assembly on membranes.
acknowledgement: We thank late Thomas Peterbauer at the Max Perutz Labs Biooptics
  Light Microscopy Facility for his help and support. We are grateful to Kitti Csalyi
  and Thomas Sauer at Max Perutz Labs Biooptics FACS facility for their help. We thank
  Grzegorz Scibisz and Sertan Atilla for their support with the expression and purification
  of mCherry-IRE1α LD-10His. We are grateful to Aleksandra S Anisimova with her help
  in the generation of stable cell lines and the statistical analyses of the data.
  We thank Venja Vieweger for her help with the characterization of the WLLI and D123P
  IRE1 mutants in cells. We are thankful to Monika Kubickova for the help with the
  AUC experiments. We acknowledge CF BIC of CIISB, Instruct-CZ Centre, supported by
  MEYS CR (LM2023042)) and European Regional Development Fund-Project, UP CIISB“ (No.
  CZ.02.1.01/0.0/0.0/18_046/0015974). We thank the members of the Karagöz lab for
  the critical reading and editing of the manuscript. We are thankful to our colleagues
  Diego Acosta-Alvear, Vladislav Belyy, Jirka Peschek, Yasin Dagdas, Javier Martinez,
  Sascha Martens and Alwin Köhler for their invaluable input on the manuscript. We
  are grateful to Life Science Editors, especially Katrina Woolcock for her useful
  edits and comments on the manuscript. We acknowledge funding from Austrian Science
  Fund (FWF-SFB F79 and FWF-W 1261) to GEK. PK acknowledges the support of the Max
  Perutz PhD fellowship. GAV is funded by Stand-Alone grants (P30231-B, P30415-B,
  P36572), Special Research Grant (SFB grant F79), and Doctoral School grant (DK grant
  W1261) from the Austrian Science Fund (FWF). ES and RC acknowledge support and funding
  by the Frankfurt Institute of Advanced Studies, the LOEWE Center for Multiscale
  Modelling in Life Sciences of the state of Hesse, the Collaborative Research Center
  1507 “Membrane-associated Protein Assemblies, Machineries, and Supercomplexes” (Project
  ID 450648163), and the International Max Planck Research School on Cellular Biophysics
  (to RC), the Center for Scientific Computing of the Goethe University and the Jülich
  Supercomputing Centre for computational resources and support.
article_processing_charge: Yes
article_type: original
author:
- first_name: Paulina
  full_name: Kettel, Paulina
  last_name: Kettel
- first_name: Laura
  full_name: Marosits, Laura
  last_name: Marosits
- first_name: Elena
  full_name: Spinetti, Elena
  last_name: Spinetti
- first_name: Michael
  full_name: Rechberger, Michael
  last_name: Rechberger
- first_name: Caterina
  full_name: Giannini, Caterina
  id: e3fdddd5-f6e0-11ea-865d-ca99ee6367f4
  last_name: Giannini
- first_name: Philipp
  full_name: Radler, Philipp
  id: 40136C2A-F248-11E8-B48F-1D18A9856A87
  last_name: Radler
  orcid: '0000-0001-9198-2182 '
- first_name: Isabell
  full_name: Niedermoser, Isabell
  last_name: Niedermoser
- first_name: Irmgard
  full_name: Fischer, Irmgard
  last_name: Fischer
- first_name: Gijs A.
  full_name: Versteeg, Gijs A.
  last_name: Versteeg
- first_name: Martin
  full_name: Loose, Martin
  id: 462D4284-F248-11E8-B48F-1D18A9856A87
  last_name: Loose
  orcid: 0000-0001-7309-9724
- first_name: Roberto
  full_name: Covino, Roberto
  last_name: Covino
- first_name: G. Elif
  full_name: Karagöz, G. Elif
  last_name: Karagöz
citation:
  ama: Kettel P, Marosits L, Spinetti E, et al. Disordered regions in the IRE1α ER
    lumenal domain mediate its stress-induced clustering. <i>EMBO Journal</i>. 2024;43(20):4668-4698.
    doi:<a href="https://doi.org/10.1038/s44318-024-00207-0">10.1038/s44318-024-00207-0</a>
  apa: Kettel, P., Marosits, L., Spinetti, E., Rechberger, M., Giannini, C., Radler,
    P., … Karagöz, G. E. (2024). Disordered regions in the IRE1α ER lumenal domain
    mediate its stress-induced clustering. <i>EMBO Journal</i>. Embo Press. <a href="https://doi.org/10.1038/s44318-024-00207-0">https://doi.org/10.1038/s44318-024-00207-0</a>
  chicago: Kettel, Paulina, Laura Marosits, Elena Spinetti, Michael Rechberger, Caterina
    Giannini, Philipp Radler, Isabell Niedermoser, et al. “Disordered Regions in the
    IRE1α ER Lumenal Domain Mediate Its Stress-Induced Clustering.” <i>EMBO Journal</i>.
    Embo Press, 2024. <a href="https://doi.org/10.1038/s44318-024-00207-0">https://doi.org/10.1038/s44318-024-00207-0</a>.
  ieee: P. Kettel <i>et al.</i>, “Disordered regions in the IRE1α ER lumenal domain
    mediate its stress-induced clustering,” <i>EMBO Journal</i>, vol. 43, no. 20.
    Embo Press, pp. 4668–4698, 2024.
  ista: Kettel P, Marosits L, Spinetti E, Rechberger M, Giannini C, Radler P, Niedermoser
    I, Fischer I, Versteeg GA, Loose M, Covino R, Karagöz GE. 2024. Disordered regions
    in the IRE1α ER lumenal domain mediate its stress-induced clustering. EMBO Journal.
    43(20), 4668–4698.
  mla: Kettel, Paulina, et al. “Disordered Regions in the IRE1α ER Lumenal Domain
    Mediate Its Stress-Induced Clustering.” <i>EMBO Journal</i>, vol. 43, no. 20,
    Embo Press, 2024, pp. 4668–98, doi:<a href="https://doi.org/10.1038/s44318-024-00207-0">10.1038/s44318-024-00207-0</a>.
  short: P. Kettel, L. Marosits, E. Spinetti, M. Rechberger, C. Giannini, P. Radler,
    I. Niedermoser, I. Fischer, G.A. Versteeg, M. Loose, R. Covino, G.E. Karagöz,
    EMBO Journal 43 (2024) 4668–4698.
date_created: 2024-09-15T22:01:42Z
date_published: 2024-10-15T00:00:00Z
date_updated: 2025-09-08T09:22:11Z
day: '15'
ddc:
- '570'
department:
- _id: MaLo
- _id: JiFr
doi: 10.1038/s44318-024-00207-0
external_id:
  isi:
  - '001306286100002'
  pmid:
  - '39232130'
file:
- access_level: open_access
  checksum: 04f4df1a561083f2846676442fc4eb3c
  content_type: application/pdf
  creator: dernst
  date_created: 2025-01-13T08:43:20Z
  date_updated: 2025-01-13T08:43:20Z
  file_id: '18827'
  file_name: 2024_Embo_Kettel.pdf
  file_size: 10080854
  relation: main_file
  success: 1
file_date_updated: 2025-01-13T08:43:20Z
fulldoi: https://doi.org/10.1038/s44318-024-00207-0
has_accepted_license: '1'
intvolume: '        43'
isi: 1
issue: '20'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 4668-4698
pmid: 1
publication: EMBO Journal
publication_identifier:
  eissn:
  - 1460-2075
  issn:
  - 0261-4189
publication_status: published
publisher: Embo Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Disordered regions in the IRE1α ER lumenal domain mediate its stress-induced
  clustering
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 43
year: '2024'
...
---
APC_amount: 2742,92 EUR
OA_place: publisher
OA_type: hybrid
_id: '18108'
abstract:
- lang: eng
  text: Here we announce the construction and properties of a big commutative subalgebra
    of the Kirillov algebra attached to a finite dimensional irreducible representation
    of a complex semisimple Lie group. They are commutative finite flat algebras over
    the cohomology of the classifying space of the group. They are isomorphic with
    the equivariant intersection cohomology of affine Schubert varieties, endowing
    the latter with a new ring structure. Study of the finer aspects of the structure
    of the big algebras will also furnish the stalks of the intersection cohomology
    with ring structure, thus ringifying Lusztig’s q-weight multiplicity polynomials
    i.e., certain affine Kazhdan–Lusztig polynomials.
acknowledgement: "We thank Nigel Hitchin for discussions and the joint projects this
  paper has grown out from. We thank Vladyslav Zveryk for collaboration on Theorem
  2.3 and on the corresponding Magma code which implements big algebras. We thank
  Hiraku Nakajima for discussions and pointing out Theorem 3.1.2, a result generalizing
  our original observation in the= = 0 case. Special thanks go to Leonid Rybnikov
  for patiently explaining his works, in particular crucial to Theorem 2.1. We thank
  Michel Brion, Michael Finkelberg, Oscar García-Prada, Jakub Löwit, Joel Kamnitzer,
  Friedrich Knop, Michael McBreen, Anton Mellit, Takuro Mochizuki, Shon Ngô, Kamil
  Rychlewicz, Shiyu Shen, Leslie Spencer, Balázs Szendr ˝ oi, András Szenes, and Oksana\r\nYakimova
  for comments and discussions. Kamil Rychlewicz and Daniel Bedats helped with the
  Mathematica files for the figures, and we used the SM_isospin Tikz package of Izaak
  Neutelings for drawing the baryon multiplets. We thank the referees for many useful
  comments. We acknowledge funding from FWF grant “Geometry of the tip of the global
  nilpotent cone” no. P 35847."
article_number: e2319341121
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Tamás
  full_name: Hausel, Tamás
  id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
  last_name: Hausel
  orcid: 0000-0002-9582-2634
citation:
  ama: Hausel T. Commutative avatars of representations of semisimple Lie groups.
    <i>Proceedings of the National Academy of Sciences of the United States of America</i>.
    2024;121(38). doi:<a href="https://doi.org/10.1073/pnas.2319341121">10.1073/pnas.2319341121</a>
  apa: Hausel, T. (2024). Commutative avatars of representations of semisimple Lie
    groups. <i>Proceedings of the National Academy of Sciences of the United States
    of America</i>. National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.2319341121">https://doi.org/10.1073/pnas.2319341121</a>
  chicago: Hausel, Tamás. “Commutative Avatars of Representations of Semisimple Lie
    Groups.” <i>Proceedings of the National Academy of Sciences of the United States
    of America</i>. National Academy of Sciences, 2024. <a href="https://doi.org/10.1073/pnas.2319341121">https://doi.org/10.1073/pnas.2319341121</a>.
  ieee: T. Hausel, “Commutative avatars of representations of semisimple Lie groups,”
    <i>Proceedings of the National Academy of Sciences of the United States of America</i>,
    vol. 121, no. 38. National Academy of Sciences, 2024.
  ista: Hausel T. 2024. Commutative avatars of representations of semisimple Lie groups.
    Proceedings of the National Academy of Sciences of the United States of America.
    121(38), e2319341121.
  mla: Hausel, Tamás. “Commutative Avatars of Representations of Semisimple Lie Groups.”
    <i>Proceedings of the National Academy of Sciences of the United States of America</i>,
    vol. 121, no. 38, e2319341121, National Academy of Sciences, 2024, doi:<a href="https://doi.org/10.1073/pnas.2319341121">10.1073/pnas.2319341121</a>.
  short: T. Hausel, Proceedings of the National Academy of Sciences of the United
    States of America 121 (2024).
corr_author: '1'
date_created: 2024-09-22T22:01:41Z
date_published: 2024-09-17T00:00:00Z
date_updated: 2025-05-08T09:57:59Z
day: '17'
ddc:
- '510'
department:
- _id: TaHa
doi: 10.1073/pnas.2319341121
external_id:
  pmid:
  - '39259592'
file:
- access_level: open_access
  checksum: df80c873633c6734d2e324841e69db58
  content_type: application/pdf
  creator: dernst
  date_created: 2024-09-23T11:22:56Z
  date_updated: 2024-09-23T11:22:56Z
  file_id: '18127'
  file_name: 2024_PNAS_Hausel.pdf
  file_size: 3764695
  relation: main_file
  success: 1
file_date_updated: 2024-09-23T11:22:56Z
fulldoi: https://doi.org/10.1073/pnas.2319341121
has_accepted_license: '1'
intvolume: '       121'
issue: '38'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 34b2c9cb-11ca-11ed-8bc3-a50ba74ca4a3
  grant_number: P35847
  name: Geometry of the tip of the global nilpotent cone
publication: Proceedings of the National Academy of Sciences of the United States
  of America
publication_identifier:
  eissn:
  - 1091-6490
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
related_material:
  link:
  - relation: press_release
    url: https://ista.ac.at/en/news/big-algebras-a-dictionary-of-abstract-math/
scopus_import: '1'
status: public
title: Commutative avatars of representations of semisimple Lie groups
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 121
year: '2024'
...
---
_id: '18109'
abstract:
- lang: eng
  text: Venous thromboembolism (VTE) is a common, deadly disease with an increasing
    incidence despite preventive efforts. Clinical observations have associated elevated
    antibody concentrations or antibody-based therapies with thrombotic events. However,
    how antibodies contribute to thrombosis is unknown. Here, we show that reduced
    blood flow enabled immunoglobulin M (IgM) to bind to FcμR and the polymeric immunoglobulin
    receptor (pIgR), initiating endothelial activation and platelet recruitment. Subsequently,
    the procoagulant surface of activated platelets accommodated antigen- and FcγR-independent
    IgG deposition. This leads to classical complement activation, setting in motion
    a prothrombotic vicious circle. Key elements of this mechanism were present in
    humans in the setting of venous stasis as well as in the dysregulated immunothrombosis
    of COVID-19. This antibody-driven thrombosis can be prevented by pharmacologically
    targeting complement. Hence, our results uncover antibodies as previously unrecognized
    central regulators of thrombosis. These findings carry relevance for therapeutic
    application of antibodies and open innovative avenues to target thrombosis without
    compromising hemostasis.
acknowledgement: "We thank Michael Carroll (Harvard Medical School, Boston) for providing
  Ighmtm1Che, C4−/−, and C3−/− mice; Mark Suter (University of Zurich, Zurich) for
  providing Aicda−/− mice; Marina Botto (Imperial College London, London) for providing
  C1q−/− and fB−/− mice; Craig Gerard (Harvard Medical School, Boston) for providing
  C3aR−/− mice; Falk Nimmerjahn (University Erlangen-Nuernberg, Erlangen) for providing
  Fcgr−/−Fcgr2b−/− mice; Karl Lang (University of Duisburg-Essen, Essen) for providing
  Fcmr−/− mice; Hans Hengartner and Rolf Zinkernagel (ETH Zurich, Zurich) for providing
  KL25 mice; Mark Zabel (University Hospital of Zurich, Zurich) for providing CR2−/−
  mice; Christie Ballantyne (Baylor College of Medicine, Houston) for providing CD11c−/−
  mice; and Siamon Gordon (University of Oxford, Oxford) for providing CD11b−/− mice.
  A.V. wishes to thank Michael Grünaug and dedicates this work to Annette, Rita, and
  Hans.\r\nThis project has received funding from the European Research Council (ERC)
  under the European Union’s Horizon 2020 research and innovation programme (grant
  agreement no. \r\n947611) (K.S.). This study was supported by the Deutsche Forschungsgemeinschaft
  through the collaborative research center 914 project B02 (K.S. and S.M.), project
  B04 (A.V.), project A01 (M.M.), project B01 (M.S.), the collaborative research center
  1123 project B07 (K.S. and S.M.), the collaborative research center 359 (project
  A03 [K.S.] and B02 [M.S.]), the international research training group 1911 project
  B09 (A.V.), the clinical research unit 303 project 7 (A.V.), cluster of excellence
  2167 (A.V.), collaborative research center 1526 project 05 (A.V.), the ANR-DFG project
  JAKPOT (K.S.), LMUexcellent (K.S.), and the Deutsche Zentrum für Herz-Kreislauf-Forschung
  (PostDoc Grant and partner site project [K.S. and S.M.]). M.I. is supported by the
  European Research Council (ERC) Advanced Grant 101141363, ERC Proof of Concept Grant
  101138728, Italian Association for Cancer Research (AIRC) Grants 19891 and \r\n22737,
  Italian Ministry for University and Research Grants PE00000007 (INF-ACT) and PRIN
  \r\n2022FMESXL, Funded Research Agreement from Asher Biotherapeutics, VIR Biotechnology,
  and BlueJay Therapeutics. V.F. is supported by the Italian Ministry for University
  and Research Grants PE00000007 (INF-ACT) and Fondazione Prossimo Mio."
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Konstantin
  full_name: Stark, Konstantin
  last_name: Stark
- first_name: Badr
  full_name: Kilani, Badr
  last_name: Kilani
- first_name: Sven
  full_name: Stockhausen, Sven
  last_name: Stockhausen
- first_name: Johanna
  full_name: Busse, Johanna
  last_name: Busse
- first_name: Irene
  full_name: Schubert, Irene
  last_name: Schubert
- first_name: Thuy Duong
  full_name: Tran, Thuy Duong
  last_name: Tran
- first_name: Florian R
  full_name: Gärtner, Florian R
  id: 397A88EE-F248-11E8-B48F-1D18A9856A87
  last_name: Gärtner
  orcid: 0000-0001-6120-3723
- first_name: Alexander
  full_name: Leunig, Alexander
  last_name: Leunig
- first_name: Kami
  full_name: Pekayvaz, Kami
  last_name: Pekayvaz
- first_name: Leo
  full_name: Nicolai, Leo
  last_name: Nicolai
- first_name: Valeria
  full_name: Fumagalli, Valeria
  last_name: Fumagalli
- first_name: Julia
  full_name: Stermann, Julia
  last_name: Stermann
- first_name: Felix
  full_name: Stephan, Felix
  last_name: Stephan
- first_name: Christian
  full_name: David, Christian
  last_name: David
- first_name: Martin B.
  full_name: Müller, Martin B.
  last_name: Müller
- first_name: Birgitta
  full_name: Heyman, Birgitta
  last_name: Heyman
- first_name: Anja
  full_name: Lux, Anja
  last_name: Lux
- first_name: Alexandra
  full_name: Da Palma Guerreiro, Alexandra
  last_name: Da Palma Guerreiro
- first_name: Lukas P.
  full_name: Frenzel, Lukas P.
  last_name: Frenzel
- first_name: Christoph Q.
  full_name: Schmidt, Christoph Q.
  last_name: Schmidt
- first_name: Arthur
  full_name: Dopler, Arthur
  last_name: Dopler
- first_name: Markus
  full_name: Moser, Markus
  last_name: Moser
- first_name: Sue
  full_name: Chandraratne, Sue
  last_name: Chandraratne
- first_name: Marie Luise
  full_name: Von Brühl, Marie Luise
  last_name: Von Brühl
- first_name: Michael
  full_name: Lorenz, Michael
  last_name: Lorenz
- first_name: Thomas
  full_name: Korff, Thomas
  last_name: Korff
- first_name: Martina
  full_name: Rudelius, Martina
  last_name: Rudelius
- first_name: Oliver
  full_name: Popp, Oliver
  last_name: Popp
- first_name: Marieluise
  full_name: Kirchner, Marieluise
  last_name: Kirchner
- first_name: Philipp
  full_name: Mertins, Philipp
  last_name: Mertins
- first_name: Falk
  full_name: Nimmerjahn, Falk
  last_name: Nimmerjahn
- first_name: Matteo
  full_name: Iannacone, Matteo
  last_name: Iannacone
- first_name: Markus
  full_name: Sperandio, Markus
  last_name: Sperandio
- first_name: Bernd
  full_name: Engelmann, Bernd
  last_name: Engelmann
- first_name: Admar
  full_name: Verschoor, Admar
  last_name: Verschoor
- first_name: Steffen
  full_name: Massberg, Steffen
  last_name: Massberg
citation:
  ama: Stark K, Kilani B, Stockhausen S, et al. Antibodies and complement are key
    drivers of thrombosis. <i>Immunity</i>. 2024;57(9):2140-2156. doi:<a href="https://doi.org/10.1016/j.immuni.2024.08.007">10.1016/j.immuni.2024.08.007</a>
  apa: Stark, K., Kilani, B., Stockhausen, S., Busse, J., Schubert, I., Tran, T. D.,
    … Massberg, S. (2024). Antibodies and complement are key drivers of thrombosis.
    <i>Immunity</i>. Elsevier. <a href="https://doi.org/10.1016/j.immuni.2024.08.007">https://doi.org/10.1016/j.immuni.2024.08.007</a>
  chicago: Stark, Konstantin, Badr Kilani, Sven Stockhausen, Johanna Busse, Irene
    Schubert, Thuy Duong Tran, Florian R Gärtner, et al. “Antibodies and Complement
    Are Key Drivers of Thrombosis.” <i>Immunity</i>. Elsevier, 2024. <a href="https://doi.org/10.1016/j.immuni.2024.08.007">https://doi.org/10.1016/j.immuni.2024.08.007</a>.
  ieee: K. Stark <i>et al.</i>, “Antibodies and complement are key drivers of thrombosis,”
    <i>Immunity</i>, vol. 57, no. 9. Elsevier, pp. 2140–2156, 2024.
  ista: Stark K, Kilani B, Stockhausen S, Busse J, Schubert I, Tran TD, Gärtner FR,
    Leunig A, Pekayvaz K, Nicolai L, Fumagalli V, Stermann J, Stephan F, David C,
    Müller MB, Heyman B, Lux A, Da Palma Guerreiro A, Frenzel LP, Schmidt CQ, Dopler
    A, Moser M, Chandraratne S, Von Brühl ML, Lorenz M, Korff T, Rudelius M, Popp
    O, Kirchner M, Mertins P, Nimmerjahn F, Iannacone M, Sperandio M, Engelmann B,
    Verschoor A, Massberg S. 2024. Antibodies and complement are key drivers of thrombosis.
    Immunity. 57(9), 2140–2156.
  mla: Stark, Konstantin, et al. “Antibodies and Complement Are Key Drivers of Thrombosis.”
    <i>Immunity</i>, vol. 57, no. 9, Elsevier, 2024, pp. 2140–56, doi:<a href="https://doi.org/10.1016/j.immuni.2024.08.007">10.1016/j.immuni.2024.08.007</a>.
  short: K. Stark, B. Kilani, S. Stockhausen, J. Busse, I. Schubert, T.D. Tran, F.R.
    Gärtner, A. Leunig, K. Pekayvaz, L. Nicolai, V. Fumagalli, J. Stermann, F. Stephan,
    C. David, M.B. Müller, B. Heyman, A. Lux, A. Da Palma Guerreiro, L.P. Frenzel,
    C.Q. Schmidt, A. Dopler, M. Moser, S. Chandraratne, M.L. Von Brühl, M. Lorenz,
    T. Korff, M. Rudelius, O. Popp, M. Kirchner, P. Mertins, F. Nimmerjahn, M. Iannacone,
    M. Sperandio, B. Engelmann, A. Verschoor, S. Massberg, Immunity 57 (2024) 2140–2156.
date_created: 2024-09-22T22:01:42Z
date_published: 2024-09-10T00:00:00Z
date_updated: 2025-09-08T09:50:13Z
day: '10'
ddc:
- '570'
department:
- _id: MiSi
doi: 10.1016/j.immuni.2024.08.007
external_id:
  isi:
  - '001317438500001'
  pmid:
  - '39226900'
file:
- access_level: open_access
  checksum: 4683de43d06a8fd8e3fc91af4ddc1ba2
  content_type: application/pdf
  creator: dernst
  date_created: 2024-09-30T09:16:03Z
  date_updated: 2024-09-30T09:16:03Z
  file_id: '18162'
  file_name: 2024_Immunity_Stark.pdf
  file_size: 6892750
  relation: main_file
  success: 1
file_date_updated: 2024-09-30T09:16:03Z
fulldoi: https://doi.org/10.1016/j.immuni.2024.08.007
has_accepted_license: '1'
intvolume: '        57'
isi: 1
issue: '9'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 2140-2156
pmid: 1
publication: Immunity
publication_identifier:
  eissn:
  - 1097-4180
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Antibodies and complement are key drivers of thrombosis
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 57
year: '2024'
...
---
_id: '18110'
abstract:
- lang: eng
  text: We study a chaotic particle-conserving kinetically constrained model, with
    a single parameter which allows us to break reflection symmetry. Through extensive
    numerical simulations we find that the domain wall state shows a variety of dynamical
    behaviors from localization all the way to ballistic transport, depending on the
    value of the reflection breaking parameter. Surprisingly, such anomalous behavior
    is not mirrored in infinite-temperature dynamics, which appear to scale diffusively,
    in line with expectations for generic interacting models. However, studying the
    particle density gradient, we show that the lack of reflection symmetry affects
    infinite-temperature dynamics, resulting in an asymmetric dynamical structure
    factor. This is in disagreement with normal diffusion and suggests that the model
    may also exhibit anomalous dynamics at infinite temperature in the thermodynamic
    limit. Finally, we observe low-entangled eigenstates in the spectrum of the model,
    a telltale sign of quantum many-body scars.
acknowledgement: "The authors acknowledge useful discussions with M. Serbyn, Z. Papic,
  and A. Nunnenkamp. ´\r\nP.B. is supported by the Erwin Schrödinger Center for Quantum
  Science & Technology (ESQ) of the Österreichische Akademie der Wissenschaften (ÖAW)
  under the Discovery Grant. M.L. acknowledges support from the European Research
  Council (ERC) under the European Union’s Horizon 2020 research and innovation programme
  (Grant Agreement\r\nNo. 850899). The numerical simulations were performed using
  the ITensor library [68] on the Vienna Scientific Cluster (VSC)."
article_number: L100304
article_processing_charge: No
article_type: letter_note
arxiv: 1
author:
- first_name: Pietro
  full_name: Brighi, Pietro
  id: 4115AF5C-F248-11E8-B48F-1D18A9856A87
  last_name: Brighi
  orcid: 0000-0002-7969-2729
- first_name: Marko
  full_name: Ljubotina, Marko
  id: F75EE9BE-5C90-11EA-905D-16643DDC885E
  last_name: Ljubotina
  orcid: 0000-0003-0038-7068
citation:
  ama: Brighi P, Ljubotina M. Anomalous transport in the kinetically constrained quantum
    East-West model. <i>Physical Review B</i>. 2024;110(10). doi:<a href="https://doi.org/10.1103/PhysRevB.110.L100304">10.1103/PhysRevB.110.L100304</a>
  apa: Brighi, P., &#38; Ljubotina, M. (2024). Anomalous transport in the kinetically
    constrained quantum East-West model. <i>Physical Review B</i>. American Physical
    Society. <a href="https://doi.org/10.1103/PhysRevB.110.L100304">https://doi.org/10.1103/PhysRevB.110.L100304</a>
  chicago: Brighi, Pietro, and Marko Ljubotina. “Anomalous Transport in the Kinetically
    Constrained Quantum East-West Model.” <i>Physical Review B</i>. American Physical
    Society, 2024. <a href="https://doi.org/10.1103/PhysRevB.110.L100304">https://doi.org/10.1103/PhysRevB.110.L100304</a>.
  ieee: P. Brighi and M. Ljubotina, “Anomalous transport in the kinetically constrained
    quantum East-West model,” <i>Physical Review B</i>, vol. 110, no. 10. American
    Physical Society, 2024.
  ista: Brighi P, Ljubotina M. 2024. Anomalous transport in the kinetically constrained
    quantum East-West model. Physical Review B. 110(10), L100304.
  mla: Brighi, Pietro, and Marko Ljubotina. “Anomalous Transport in the Kinetically
    Constrained Quantum East-West Model.” <i>Physical Review B</i>, vol. 110, no.
    10, L100304, American Physical Society, 2024, doi:<a href="https://doi.org/10.1103/PhysRevB.110.L100304">10.1103/PhysRevB.110.L100304</a>.
  short: P. Brighi, M. Ljubotina, Physical Review B 110 (2024).
corr_author: '1'
date_created: 2024-09-22T22:01:42Z
date_published: 2024-09-11T00:00:00Z
date_updated: 2025-09-08T09:49:29Z
day: '11'
department:
- _id: MaSe
doi: 10.1103/PhysRevB.110.L100304
ec_funded: 1
external_id:
  arxiv:
  - '2405.02102'
  isi:
  - '001361617100003'
fulldoi: https://doi.org/10.1103/PhysRevB.110.L100304
intvolume: '       110'
isi: 1
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2405.02102
month: '09'
oa: 1
oa_version: Preprint
project:
- _id: 23841C26-32DE-11EA-91FC-C7463DDC885E
  call_identifier: H2020
  grant_number: '850899'
  name: 'Non-Ergodic Quantum Matter: Universality, Dynamics and Control'
publication: Physical Review B
publication_identifier:
  eissn:
  - 2469-9969
  issn:
  - 2469-9950
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Anomalous transport in the kinetically constrained quantum East-West model
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 110
year: '2024'
...
---
_id: '18115'
abstract:
- lang: eng
  text: "We study the data selection problem, whose aim is to select a small representative
    subset of data that can be used to efficiently train a machine learning model.
    We present a new data selection approach based on k-means clustering and sensitivity
    sampling. Assuming access to an embedding representation of the data with respect
    to which the model loss is Holder continuous, our approach provably allows selecting
    a set of “typical” k+1/ε2 elements whose average loss corresponds to the average
    loss of the whole dataset, up to a multiplicative (1±ε)\r\n factor and an additive
    ελΦk, where Φk represents the k-means cost for the input embeddings and λ is the
    Holder constant. We furthermore demonstrate the performance and scalability of
    our approach on fine-tuning foundation models and show that it outperforms state-of-the-art
    methods. We also show how it can be applied on linear regression, leading to a
    new sampling strategy that surprisingly matches the performance of leverage score
    sampling, while being conceptually simpler and more scalable."
acknowledgement: "Monika Henzinger: This project has received funding from the European
  Research Council (ERC) under the European Union’s Horizon 2020 research and innovation
  programme (Grant agreement No. 101019564) and the Austrian Science Fund (FWF) grant
  DOI 10.55776/Z422, grant DOI 10.55776/I5982, and grant DOI 10.55776/P33775 with
  additional funding from the netidee SCIENCE Stiftung, 2020–2024. This work was partially
  done while David Saulpic was at the Institute for Science and Technology, Austria
  (ISTA). David Sauplic has received funding from the European Union’s Horizon 2020
  research and innovation programme under the\r\nMarie Sklodowska-Curie grant agreement
  No 101034413. Work was done while David Woodruff was visiting Google Research."
alternative_title:
- PMLR
article_processing_charge: No
arxiv: 1
author:
- first_name: Kyriakos
  full_name: Axiotis, Kyriakos
  last_name: Axiotis
- first_name: Vincent
  full_name: Cohen-Addad, Vincent
  last_name: Cohen-Addad
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Sammy
  full_name: Jerome, Sammy
  last_name: Jerome
- first_name: Vahab
  full_name: Mirrokni, Vahab
  last_name: Mirrokni
- first_name: David
  full_name: Saulpic, David
  id: f8e48cf0-b0ff-11ed-b0e9-b4c35598f964
  last_name: Saulpic
- first_name: David P.
  full_name: Woodruff, David P.
  last_name: Woodruff
- first_name: Michael
  full_name: Wunder, Michael
  last_name: Wunder
citation:
  ama: 'Axiotis K, Cohen-Addad V, Henzinger M, et al. Data-efficient learning via
    clustering-based sensitivity sampling: Foundation models and beyond. In: <i>Proceedings
    of the 41st International Conference on Machine Learning</i>. Vol 235. ML Research
    Press; 2024:2086-2107.'
  apa: 'Axiotis, K., Cohen-Addad, V., Henzinger, M., Jerome, S., Mirrokni, V., Saulpic,
    D., … Wunder, M. (2024). Data-efficient learning via clustering-based sensitivity
    sampling: Foundation models and beyond. In <i>Proceedings of the 41st International
    Conference on Machine Learning</i> (Vol. 235, pp. 2086–2107). Vienna, Austria:
    ML Research Press.'
  chicago: 'Axiotis, Kyriakos, Vincent Cohen-Addad, Monika Henzinger, Sammy Jerome,
    Vahab Mirrokni, David Saulpic, David P. Woodruff, and Michael Wunder. “Data-Efficient
    Learning via Clustering-Based Sensitivity Sampling: Foundation Models and Beyond.”
    In <i>Proceedings of the 41st International Conference on Machine Learning</i>,
    235:2086–2107. ML Research Press, 2024.'
  ieee: 'K. Axiotis <i>et al.</i>, “Data-efficient learning via clustering-based sensitivity
    sampling: Foundation models and beyond,” in <i>Proceedings of the 41st International
    Conference on Machine Learning</i>, Vienna, Austria, 2024, vol. 235, pp. 2086–2107.'
  ista: 'Axiotis K, Cohen-Addad V, Henzinger M, Jerome S, Mirrokni V, Saulpic D, Woodruff
    DP, Wunder M. 2024. Data-efficient learning via clustering-based sensitivity sampling:
    Foundation models and beyond. Proceedings of the 41st International Conference
    on Machine Learning. ICML: International Conference on Machine Learning, PMLR,
    vol. 235, 2086–2107.'
  mla: 'Axiotis, Kyriakos, et al. “Data-Efficient Learning via Clustering-Based Sensitivity
    Sampling: Foundation Models and Beyond.” <i>Proceedings of the 41st International
    Conference on Machine Learning</i>, vol. 235, ML Research Press, 2024, pp. 2086–107.'
  short: K. Axiotis, V. Cohen-Addad, M. Henzinger, S. Jerome, V. Mirrokni, D. Saulpic,
    D.P. Woodruff, M. Wunder, in:, Proceedings of the 41st International Conference
    on Machine Learning, ML Research Press, 2024, pp. 2086–2107.
conference:
  end_date: 2024-07-27
  location: Vienna, Austria
  name: 'ICML: International Conference on Machine Learning'
  start_date: 2024-07-21
date_created: 2024-09-22T22:01:44Z
date_published: 2024-09-01T00:00:00Z
date_updated: 2026-06-18T18:00:19Z
day: '01'
ddc:
- '000'
department:
- _id: MoHe
ec_funded: 1
external_id:
  arxiv:
  - '2402.17327'
intvolume: '       235'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2402.17327
month: '09'
oa: 1
oa_version: Published Version
page: 2086-2107
project:
- _id: bd9ca328-d553-11ed-ba76-dc4f890cfe62
  call_identifier: H2020
  grant_number: '101019564'
  name: The design and evaluation of modern fully dynamic data structures
- _id: 34def286-11ca-11ed-8bc3-da5948e1613c
  grant_number: Z00422
  name: Efficient algorithms
- _id: bda196b2-d553-11ed-ba76-8e8ee6c21103
  grant_number: I05982
  name: Static and Dynamic Hierarchical Graph Decompositions
- _id: bd9e3a2e-d553-11ed-ba76-8aa684ce17fe
  grant_number: P33775
  name: Fast Algorithms for a Reactive Network Layer
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: Proceedings of the 41st International Conference on Machine Learning
publication_identifier:
  eissn:
  - 2640-3498
publication_status: published
publisher: ML Research Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Data-efficient learning via clustering-based sensitivity sampling: Foundation
  models and beyond'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 235
year: '2024'
...
---
_id: '18116'
abstract:
- lang: eng
  text: 'As a staple of data analysis and unsupervised learning, the problem of private
    clustering has been widely studied, under various privacy models. Centralized
    differential privacy is the first of them, and the problem has also been studied
    for the local and the shuffle variation. In each case, the goal is to design an
    algorithm that computes privately a clustering, with the smallest possible error.
    The study of each variation gave rise to new algorithm: the landscape of private
    clustering algorithm is therefore quite intricate. In this paper, we show that
    a 20 year-old algorithm can be slightly modified to work for any of those models.
    This provides a unified picture: while matching almost all previously known results,
    it allows us to improve some of them, and extend to a new privacy model, the continual
    observation setting, where the input is changing over time and the algorithm must
    output a new solution at each time step.'
acknowledgement: 'Monika Henzinger: This project has received funding from the European
  Research Council (ERC) under the European Union’s Horizon 2020 research and innovation
  programme (Grant agreement No. 101019564) and the Austrian Science Fund (FWF) grant
  DOI 10.55776/Z422, grant DOI 10.55776/I5982, and grant DOI 10.55776/P33775 with
  additional funding from the netidee SCIENCE Stiftung, 2020–2024.This work was partially
  done while David Saulpic was at the Institute for Science and Technology, Austria
  (ISTA). David Sauplic has received funding from the European Union’s Horizon 2020
  research and innovation programme under the Marie Sklodowska-Curie grant agreement
  No 101034413.'
alternative_title:
- PMLR
article_processing_charge: No
arxiv: 1
author:
- first_name: Max Dupré
  full_name: La Tour, Max Dupré
  last_name: La Tour
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: David
  full_name: Saulpic, David
  id: f8e48cf0-b0ff-11ed-b0e9-b4c35598f964
  last_name: Saulpic
citation:
  ama: 'La Tour MD, Henzinger M, Saulpic D. Making old things new: A unified algorithm
    for differentially private clustering. In: <i>Proceedings of the 41st International
    Conference on Machine Learning</i>. Vol 235. ML Research Press; 2024:12046-12086.'
  apa: 'La Tour, M. D., Henzinger, M., &#38; Saulpic, D. (2024). Making old things
    new: A unified algorithm for differentially private clustering. In <i>Proceedings
    of the 41st International Conference on Machine Learning</i> (Vol. 235, pp. 12046–12086).
    Vienna, Austria: ML Research Press.'
  chicago: 'La Tour, Max Dupré, Monika Henzinger, and David Saulpic. “Making Old Things
    New: A Unified Algorithm for Differentially Private Clustering.” In <i>Proceedings
    of the 41st International Conference on Machine Learning</i>, 235:12046–86. ML
    Research Press, 2024.'
  ieee: 'M. D. La Tour, M. Henzinger, and D. Saulpic, “Making old things new: A unified
    algorithm for differentially private clustering,” in <i>Proceedings of the 41st
    International Conference on Machine Learning</i>, Vienna, Austria, 2024, vol.
    235, pp. 12046–12086.'
  ista: 'La Tour MD, Henzinger M, Saulpic D. 2024. Making old things new: A unified
    algorithm for differentially private clustering. Proceedings of the 41st International
    Conference on Machine Learning. ICML: International Conference on Machine Learning,
    PMLR, vol. 235, 12046–12086.'
  mla: 'La Tour, Max Dupré, et al. “Making Old Things New: A Unified Algorithm for
    Differentially Private Clustering.” <i>Proceedings of the 41st International Conference
    on Machine Learning</i>, vol. 235, ML Research Press, 2024, pp. 12046–86.'
  short: M.D. La Tour, M. Henzinger, D. Saulpic, in:, Proceedings of the 41st International
    Conference on Machine Learning, ML Research Press, 2024, pp. 12046–12086.
conference:
  end_date: 2024-07-27
  location: Vienna, Austria
  name: 'ICML: International Conference on Machine Learning'
  start_date: 2024-07-21
corr_author: '1'
date_created: 2024-09-22T22:01:44Z
date_published: 2024-09-01T00:00:00Z
date_updated: 2026-06-18T18:01:02Z
day: '01'
ddc:
- '000'
department:
- _id: MoHe
ec_funded: 1
external_id:
  arxiv:
  - '2406.11649'
intvolume: '       235'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2406.11649
month: '09'
oa: 1
oa_version: Published Version
page: 12046-12086
project:
- _id: bd9ca328-d553-11ed-ba76-dc4f890cfe62
  call_identifier: H2020
  grant_number: '101019564'
  name: The design and evaluation of modern fully dynamic data structures
- _id: 34def286-11ca-11ed-8bc3-da5948e1613c
  grant_number: Z00422
  name: Efficient algorithms
- _id: bda196b2-d553-11ed-ba76-8e8ee6c21103
  grant_number: I05982
  name: Static and Dynamic Hierarchical Graph Decompositions
- _id: bd9e3a2e-d553-11ed-ba76-8aa684ce17fe
  grant_number: P33775
  name: Fast Algorithms for a Reactive Network Layer
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: Proceedings of the 41st International Conference on Machine Learning
publication_identifier:
  eissn:
  - 2640-3498
publication_status: published
publisher: ML Research Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Making old things new: A unified algorithm for differentially private clustering'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 235
year: '2024'
...
---
_id: '18156'
abstract:
- lang: eng
  text: Privately counting distinct elements in a stream is a fundamental data analysis
    problem with many applications in machine learning. In the turnstile model, Jain
    et al. [NeurIPS2023] initiated the study of this problem parameterized by the
    maximum flippancy of any element, i.e., the number of times that the count of
    an element changes from 0 to above 0 or vice versa. They give an item-level (ε,δ)-differentially
    private algorithm whose additive error is tight with respect to that parameterization.
    In this work, we show that a very simple algorithm based on the sparse vector
    technique achieves a tight additive error for item-level (ε,δ)-differential privacy
    and item-level ε-differential privacy with regards to a different parameterization,
    namely the sum of all flippancies. Our second result is a bound which shows that
    for a large class of algorithms, including all existing differentially private
    algorithms for this problem, the lower bound from item-level differential privacy
    extends to event-level differential privacy. This partially answers an open question
    by Jain et al. [NeurIPS2023].
acknowledgement: "Monika Henzinger: This project has received funding from the European
  Research Council\r\n(ERC) under the European Union’s Horizon 2020 research and innovation
  programme (MoDynStruct,No. 101019564) and the Austrian Science Fund (FWF) grant
  DOI 10.55776/Z422, grant DOI 10.55776/I5982, and grant DOI 10.55776/P33775 with
  additional funding from the netidee SCIENCE Stiftung, 2020–2024.\r\nTeresa Anna
  Steiner: Supported by a research grant (VIL51463) from VILLUM FONDEN."
alternative_title:
- LIPIcs
article_number: '40'
article_processing_charge: No
arxiv: 1
author:
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: A. R.
  full_name: Sricharan, A. R.
  last_name: Sricharan
- first_name: Teresa Anna
  full_name: Steiner, Teresa Anna
  last_name: Steiner
citation:
  ama: 'Henzinger M, Sricharan AR, Steiner TA. Private counting of distinct elements
    in the turnstile model and extensions. In: <i>International Conference on Approximation
    Algorithms for Combinatorial Optimization Problems </i>. Vol 317. Schloss Dagstuhl
    - Leibniz-Zentrum für Informatik; 2024. doi:<a href="https://doi.org/10.4230/LIPIcs.APPROX/RANDOM.2024.40">10.4230/LIPIcs.APPROX/RANDOM.2024.40</a>'
  apa: 'Henzinger, M., Sricharan, A. R., &#38; Steiner, T. A. (2024). Private counting
    of distinct elements in the turnstile model and extensions. In <i>International
    Conference on Approximation Algorithms for Combinatorial Optimization Problems
    </i> (Vol. 317). London, United Kingdom: Schloss Dagstuhl - Leibniz-Zentrum für
    Informatik. <a href="https://doi.org/10.4230/LIPIcs.APPROX/RANDOM.2024.40">https://doi.org/10.4230/LIPIcs.APPROX/RANDOM.2024.40</a>'
  chicago: Henzinger, Monika, A. R. Sricharan, and Teresa Anna Steiner. “Private Counting
    of Distinct Elements in the Turnstile Model and Extensions.” In <i>International
    Conference on Approximation Algorithms for Combinatorial Optimization Problems
    </i>, Vol. 317. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2024. <a href="https://doi.org/10.4230/LIPIcs.APPROX/RANDOM.2024.40">https://doi.org/10.4230/LIPIcs.APPROX/RANDOM.2024.40</a>.
  ieee: M. Henzinger, A. R. Sricharan, and T. A. Steiner, “Private counting of distinct
    elements in the turnstile model and extensions,” in <i>International Conference
    on Approximation Algorithms for Combinatorial Optimization Problems </i>, London,
    United Kingdom, 2024, vol. 317.
  ista: 'Henzinger M, Sricharan AR, Steiner TA. 2024. Private counting of distinct
    elements in the turnstile model and extensions. International Conference on Approximation
    Algorithms for Combinatorial Optimization Problems . APPROX: Conference on Approximation
    Algorithms for Combinatorial Optimization Problems, LIPIcs, vol. 317, 40.'
  mla: Henzinger, Monika, et al. “Private Counting of Distinct Elements in the Turnstile
    Model and Extensions.” <i>International Conference on Approximation Algorithms
    for Combinatorial Optimization Problems </i>, vol. 317, 40, Schloss Dagstuhl -
    Leibniz-Zentrum für Informatik, 2024, doi:<a href="https://doi.org/10.4230/LIPIcs.APPROX/RANDOM.2024.40">10.4230/LIPIcs.APPROX/RANDOM.2024.40</a>.
  short: M. Henzinger, A.R. Sricharan, T.A. Steiner, in:, International Conference
    on Approximation Algorithms for Combinatorial Optimization Problems , Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2024.
conference:
  end_date: 2024-08-30
  location: London, United Kingdom
  name: 'APPROX: Conference on Approximation Algorithms for Combinatorial Optimization
    Problems'
  start_date: 2024-08-27
corr_author: '1'
date_created: 2024-09-29T22:01:38Z
date_published: 2024-09-16T00:00:00Z
date_updated: 2025-12-02T13:47:16Z
day: '16'
ddc:
- '000'
department:
- _id: MoHe
doi: 10.4230/LIPIcs.APPROX/RANDOM.2024.40
ec_funded: 1
external_id:
  arxiv:
  - '2408.11637'
  isi:
  - '001545634500040'
file:
- access_level: open_access
  checksum: c08b41c896e4d8c69570044808b40e0b
  content_type: application/pdf
  creator: dernst
  date_created: 2024-10-01T10:07:14Z
  date_updated: 2024-10-01T10:07:14Z
  file_id: '18166'
  file_name: 2024_LIPICs_HenzingerM.pdf
  file_size: 973917
  relation: main_file
  success: 1
file_date_updated: 2024-10-01T10:07:14Z
fulldoi: https://doi.org/10.4230/LIPIcs.APPROX/RANDOM.2024.40
has_accepted_license: '1'
intvolume: '       317'
isi: 1
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
project:
- _id: bd9ca328-d553-11ed-ba76-dc4f890cfe62
  call_identifier: H2020
  grant_number: '101019564'
  name: The design and evaluation of modern fully dynamic data structures
- _id: 34def286-11ca-11ed-8bc3-da5948e1613c
  grant_number: Z00422
  name: Efficient algorithms
- _id: bda196b2-d553-11ed-ba76-8e8ee6c21103
  grant_number: I05982
  name: Static and Dynamic Hierarchical Graph Decompositions
- _id: bd9e3a2e-d553-11ed-ba76-8aa684ce17fe
  grant_number: P33775
  name: Fast Algorithms for a Reactive Network Layer
publication: 'International Conference on Approximation Algorithms for Combinatorial
  Optimization Problems '
publication_identifier:
  isbn:
  - '9783959773485'
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: Private counting of distinct elements in the turnstile model and extensions
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 317
year: '2024'
...
---
_id: '18159'
abstract:
- lang: eng
  text: "Markov Decision Processes (MDPs) are a classical model for decision making
    in the presence of uncertainty. Often they are viewed as state transformers with
    planning objectives defned with respect to paths over MDP states. An increasingly\r\npopular
    alternative is to view them as distribution transformers, giving rise to a sequence
    of probability distributions over MDP states. For instance, reachability and safety
    properties in modeling robot swarms or chemical reaction networks are naturally
    defned in terms of probability distributions over states. Verifying such distributional
    properties is known to be hard and often beyond the reach of classical state-based
    verifcation techniques. In this work, we consider the problems of certifed policy
    (i.e. controller) verifcation and synthesis in MDPs under distributional reach-avoidance
    specifcations. By certifed we mean that, along with a policy, we also aim to synthesize
    a (checkable) certifcate ensuring that the MDP indeed satisfes the property. Thus,
    given the target set of distributions and an unsafe set of distributions over
    MDP states, our goal is to either synthesize a certifcate for a given policy or
    synthesize a policy along with a certifcate, proving that the target distribution
    can be reached while avoiding unsafe distributions. To solve this problem, we
    introduce the novel notion of distributional reach-avoid certifcates and present
    automated procedures for (1) synthesizing a certifcate for a given policy, and
    (2) synthesizing a policy together with the certifcate, both providing formal
    guarantees on certifcate correctness. Our experimental evaluation demonstrates
    the ability of our method to solve several non-trivial examples, including a multi-agent
    robot-swarm model, to synthesize certifed policies and to certify existing policies. "
acknowledgement: This work was supported in part by the ERC-2020-CoG 863818 (FoRM-SMArt),
  the Singapore Ministry of Education (MOE) Academic Research Fund (AcRF) Tier 1 grant,
  Google Research Award 2023 and the SBI Foundation Hub for Data and Analytics.
article_processing_charge: No
arxiv: 1
author:
- first_name: S
  full_name: Akshay, S
  last_name: Akshay
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Tobias
  full_name: Meggendorfer, Tobias
  id: b21b0c15-30a2-11eb-80dc-f13ca25802e1
  last_name: Meggendorfer
  orcid: 0000-0002-1712-2165
- first_name: Dorde
  full_name: Zikelic, Dorde
  id: 294AA7A6-F248-11E8-B48F-1D18A9856A87
  last_name: Zikelic
  orcid: 0000-0002-4681-1699
citation:
  ama: 'Akshay S, Chatterjee K, Meggendorfer T, Zikelic D. Certified policy verification
    and synthesis for MDPs under distributional reach-avoidance properties. In: <i>Proceedings
    of the Thirty-Third International Joint Conference on Artificial Intelligence</i>.
    International Joint Conferences on Artificial Intelligence; 2024:3-12. doi:<a
    href="https://doi.org/10.24963/ijcai.2024/1">10.24963/ijcai.2024/1</a>'
  apa: 'Akshay, S., Chatterjee, K., Meggendorfer, T., &#38; Zikelic, D. (2024). Certified
    policy verification and synthesis for MDPs under distributional reach-avoidance
    properties. In <i>Proceedings of the Thirty-Third International Joint Conference
    on Artificial Intelligence</i> (pp. 3–12). Jeju, Korea: International Joint Conferences
    on Artificial Intelligence. <a href="https://doi.org/10.24963/ijcai.2024/1">https://doi.org/10.24963/ijcai.2024/1</a>'
  chicago: Akshay, S, Krishnendu Chatterjee, Tobias Meggendorfer, and Dorde Zikelic.
    “Certified Policy Verification and Synthesis for MDPs under Distributional Reach-Avoidance
    Properties.” In <i>Proceedings of the Thirty-Third International Joint Conference
    on Artificial Intelligence</i>, 3–12. International Joint Conferences on Artificial
    Intelligence, 2024. <a href="https://doi.org/10.24963/ijcai.2024/1">https://doi.org/10.24963/ijcai.2024/1</a>.
  ieee: S. Akshay, K. Chatterjee, T. Meggendorfer, and D. Zikelic, “Certified policy
    verification and synthesis for MDPs under distributional reach-avoidance properties,”
    in <i>Proceedings of the Thirty-Third International Joint Conference on Artificial
    Intelligence</i>, Jeju, Korea, 2024, pp. 3–12.
  ista: 'Akshay S, Chatterjee K, Meggendorfer T, Zikelic D. 2024. Certified policy
    verification and synthesis for MDPs under distributional reach-avoidance properties.
    Proceedings of the Thirty-Third International Joint Conference on Artificial Intelligence.
    IJCAI: International Joint Conference on Artificial Intelligence, 3–12.'
  mla: Akshay, S., et al. “Certified Policy Verification and Synthesis for MDPs under
    Distributional Reach-Avoidance Properties.” <i>Proceedings of the Thirty-Third
    International Joint Conference on Artificial Intelligence</i>, International Joint
    Conferences on Artificial Intelligence, 2024, pp. 3–12, doi:<a href="https://doi.org/10.24963/ijcai.2024/1">10.24963/ijcai.2024/1</a>.
  short: S. Akshay, K. Chatterjee, T. Meggendorfer, D. Zikelic, in:, Proceedings of
    the Thirty-Third International Joint Conference on Artificial Intelligence, International
    Joint Conferences on Artificial Intelligence, 2024, pp. 3–12.
conference:
  end_date: 2024-08-09
  location: Jeju, Korea
  name: 'IJCAI: International Joint Conference on Artificial Intelligence'
  start_date: 2024-08-03
corr_author: '1'
date_created: 2024-09-29T22:01:38Z
date_published: 2024-09-01T00:00:00Z
date_updated: 2025-04-14T07:52:46Z
day: '01'
department:
- _id: KrCh
doi: 10.24963/ijcai.2024/1
ec_funded: 1
external_id:
  arxiv:
  - '2405.04015'
fulldoi: https://doi.org/10.24963/ijcai.2024/1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2405.04015
month: '09'
oa: 1
oa_version: Preprint
page: 3-12
project:
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '863818'
  name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
publication: Proceedings of the Thirty-Third International Joint Conference on Artificial
  Intelligence
publication_identifier:
  isbn:
  - '9781956792041'
  issn:
  - 1045-0823
publication_status: published
publisher: International Joint Conferences on Artificial Intelligence
quality_controlled: '1'
scopus_import: '1'
status: public
title: Certified policy verification and synthesis for MDPs under distributional reach-avoidance
  properties
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
OA_place: repository
OA_type: green
_id: '18160'
abstract:
- lang: eng
  text: 'Markov decision processes (MDPs) provide a standard framework for sequential
    decision making under uncertainty. However, MDPs do not take uncertainty in transition
    probabilities into account. Robust Markov decision processes (RMDPs) address this
    shortcoming of MDPs by assigning to each transition an uncertainty set rather
    than a single probability value. In this work, we consider polytopic RMDPs in
    which all uncertainty sets are polytopes and study the problem of solving long-run
    average reward polytopic RMDPs. We present a novel perspective on this problem
    and show that it can be reduced to solving long-run average reward turn-based
    stochastic games with finite state and action spaces. This reduction allows us
    to derive several important consequences that were hitherto not known to hold
    for polytopic RMDPs. First, we derive new computational complexity bounds for
    solving long-run average reward polytopic RMDPs, showing for the first time that
    the threshold decision problem for them is in NP∩CONP and that they admit a randomized
    algorithm with sub-exponential expected runtime. Second, we present Robust Polytopic
    Policy Iteration (RPPI), a novel policy iteration algorithm for solving long-run
    average reward polytopic RMDPs. Our experimental evaluation shows that RPPI is
    much more efficient in solving long-run average reward polytopic RMDPs compared
    to state-of-the-art methods based on value iteration. '
acknowledgement: "This work was supported in part by the ERC-2020-CoG 863818 (FoRM-SMArt)
  and the Czech Science Foundation\r\ngrant no. GA23-06963S."
article_processing_charge: No
arxiv: 1
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Ehsan
  full_name: Kafshdar Goharshadi, Ehsan
  id: 103b4fa0-896a-11ed-bdf8-87b697bef40d
  last_name: Kafshdar Goharshadi
  orcid: 0000-0002-8595-0587
- first_name: Mehrdad
  full_name: Karrabi, Mehrdad
  id: 67638922-f394-11eb-9cf6-f20423e08757
  last_name: Karrabi
- first_name: Petr
  full_name: Novotný, Petr
  id: 3CC3B868-F248-11E8-B48F-1D18A9856A87
  last_name: Novotný
- first_name: Dorde
  full_name: Zikelic, Dorde
  id: 294AA7A6-F248-11E8-B48F-1D18A9856A87
  last_name: Zikelic
  orcid: 0000-0002-4681-1699
citation:
  ama: 'Chatterjee K, Goharshady E, Karrabi M, Novotný P, Zikelic D. Solving long-run
    average reward robust MDPs via stochastic games. In: <i>33rd International Joint
    Conference on Artificial Intelligence</i>. International Joint Conferences on
    Artificial Intelligence; 2024:6707-6715. doi:<a href="https://doi.org/10.24963/ijcai.2024/741">10.24963/ijcai.2024/741</a>'
  apa: 'Chatterjee, K., Goharshady, E., Karrabi, M., Novotný, P., &#38; Zikelic, D.
    (2024). Solving long-run average reward robust MDPs via stochastic games. In <i>33rd
    International Joint Conference on Artificial Intelligence</i> (pp. 6707–6715).
    Jeju, South Korea: International Joint Conferences on Artificial Intelligence.
    <a href="https://doi.org/10.24963/ijcai.2024/741">https://doi.org/10.24963/ijcai.2024/741</a>'
  chicago: Chatterjee, Krishnendu, Ehsan Goharshady, Mehrdad Karrabi, Petr Novotný,
    and Dorde Zikelic. “Solving Long-Run Average Reward Robust MDPs via Stochastic
    Games.” In <i>33rd International Joint Conference on Artificial Intelligence</i>,
    6707–15. International Joint Conferences on Artificial Intelligence, 2024. <a
    href="https://doi.org/10.24963/ijcai.2024/741">https://doi.org/10.24963/ijcai.2024/741</a>.
  ieee: K. Chatterjee, E. Goharshady, M. Karrabi, P. Novotný, and D. Zikelic, “Solving
    long-run average reward robust MDPs via stochastic games,” in <i>33rd International
    Joint Conference on Artificial Intelligence</i>, Jeju, South Korea, 2024, pp.
    6707–6715.
  ista: 'Chatterjee K, Goharshady E, Karrabi M, Novotný P, Zikelic D. 2024. Solving
    long-run average reward robust MDPs via stochastic games. 33rd International Joint
    Conference on Artificial Intelligence. IJCAI: International Joint Conference on
    Artificial Intelligence, 6707–6715.'
  mla: Chatterjee, Krishnendu, et al. “Solving Long-Run Average Reward Robust MDPs
    via Stochastic Games.” <i>33rd International Joint Conference on Artificial Intelligence</i>,
    International Joint Conferences on Artificial Intelligence, 2024, pp. 6707–15,
    doi:<a href="https://doi.org/10.24963/ijcai.2024/741">10.24963/ijcai.2024/741</a>.
  short: K. Chatterjee, E. Goharshady, M. Karrabi, P. Novotný, D. Zikelic, in:, 33rd
    International Joint Conference on Artificial Intelligence, International Joint
    Conferences on Artificial Intelligence, 2024, pp. 6707–6715.
conference:
  end_date: 2024-08-09
  location: Jeju, South Korea
  name: 'IJCAI: International Joint Conference on Artificial Intelligence'
  start_date: 2024-08-03
corr_author: '1'
date_created: 2024-09-29T22:01:39Z
date_published: 2024-09-01T00:00:00Z
date_updated: 2025-04-14T07:52:46Z
day: '01'
department:
- _id: KrCh
doi: 10.24963/ijcai.2024/741
ec_funded: 1
external_id:
  arxiv:
  - '2312.13912'
fulldoi: https://doi.org/10.24963/ijcai.2024/741
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2312.13912
month: '09'
oa: 1
oa_version: Preprint
page: 6707-6715
project:
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '863818'
  name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
publication: 33rd International Joint Conference on Artificial Intelligence
publication_identifier:
  isbn:
  - '9781956792041'
  issn:
  - 1045-0823
publication_status: published
publisher: International Joint Conferences on Artificial Intelligence
quality_controlled: '1'
scopus_import: '1'
status: public
title: Solving long-run average reward robust MDPs via stochastic games
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2024'
...
---
OA_type: closed access
_id: '18167'
abstract:
- lang: eng
  text: 'Holdase chaperones are essential in the mitochondrial membrane-protein biogenesis
    as they stabilize preproteins and keep them in an import-competent state as they
    travel through the aqueous cytosol and intermembrane space. The small TIM chaperones
    of the mitochondrial intermembrane space function within a fine balance of client
    promiscuity and high affinity binding, while being also able to release their
    client proteins without significant energy barrier to the downstream insertases/translocases.
    The tendency of the preproteins to aggregate and the dynamic nature of the preprotein—chaperone
    complexes makes the preparation of these complexes challenging. Here we present
    two optimized methods for complex formation of highly hydrophobic precursor proteins
    and chaperones: a pull-down approach and an in-vitro translation strategy. In
    the former, attaching the client protein to an affinity resin keeps the individual
    client protein copies apart from each other and decreases the client self-aggregation
    probability, thereby favouring complex formation. In the latter approach, a purified
    chaperone, added to the cell-free protein synthesis, captures the nascent precursor
    protein. The choice of method will depend on the desired client-chaperone complex
    amount, or the need for specific labeling scheme.'
article_processing_charge: No
author:
- first_name: Undina
  full_name: Guillerm, Undina
  id: bb74f472-ae54-11eb-9835-bc9c22fb1183
  last_name: Guillerm
- first_name: Iva
  full_name: Sučec, Iva
  last_name: Sučec
- first_name: Paul
  full_name: Schanda, Paul
  id: 7B541462-FAF6-11E9-A490-E8DFE5697425
  last_name: Schanda
  orcid: 0000-0002-9350-7606
citation:
  ama: 'Guillerm U, Sučec I, Schanda P. Generation of TIM chaperone substrate complexes.
    In: <i>Methods in Enzymology</i>. Vol 707. Elsevier; 2024:391-422. doi:<a href="https://doi.org/10.1016/bs.mie.2024.07.051">10.1016/bs.mie.2024.07.051</a>'
  apa: Guillerm, U., Sučec, I., &#38; Schanda, P. (2024). Generation of TIM chaperone
    substrate complexes. In <i>Methods in Enzymology</i> (Vol. 707, pp. 391–422).
    Elsevier. <a href="https://doi.org/10.1016/bs.mie.2024.07.051">https://doi.org/10.1016/bs.mie.2024.07.051</a>
  chicago: Guillerm, Undina, Iva Sučec, and Paul Schanda. “Generation of TIM Chaperone
    Substrate Complexes.” In <i>Methods in Enzymology</i>, 707:391–422. Elsevier,
    2024. <a href="https://doi.org/10.1016/bs.mie.2024.07.051">https://doi.org/10.1016/bs.mie.2024.07.051</a>.
  ieee: U. Guillerm, I. Sučec, and P. Schanda, “Generation of TIM chaperone substrate
    complexes,” in <i>Methods in Enzymology</i>, vol. 707, Elsevier, 2024, pp. 391–422.
  ista: 'Guillerm U, Sučec I, Schanda P. 2024.Generation of TIM chaperone substrate
    complexes. In: Methods in Enzymology. vol. 707, 391–422.'
  mla: Guillerm, Undina, et al. “Generation of TIM Chaperone Substrate Complexes.”
    <i>Methods in Enzymology</i>, vol. 707, Elsevier, 2024, pp. 391–422, doi:<a href="https://doi.org/10.1016/bs.mie.2024.07.051">10.1016/bs.mie.2024.07.051</a>.
  short: U. Guillerm, I. Sučec, P. Schanda, in:, Methods in Enzymology, Elsevier,
    2024, pp. 391–422.
corr_author: '1'
date_created: 2024-10-01T10:58:27Z
date_published: 2024-09-13T00:00:00Z
date_updated: 2025-10-22T06:40:54Z
day: '13'
department:
- _id: PaSc
doi: 10.1016/bs.mie.2024.07.051
external_id:
  pmid:
  - '39488384'
fulldoi: https://doi.org/10.1016/bs.mie.2024.07.051
intvolume: '       707'
language:
- iso: eng
month: '09'
oa_version: None
page: 391-422
pmid: 1
publication: Methods in Enzymology
publication_identifier:
  issn:
  - 0076-6879
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Generation of TIM chaperone substrate complexes
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 707
year: '2024'
...
---
OA_type: closed access
_id: '18171'
abstract:
- lang: eng
  text: Defense against pathogens and parasites requires substantial investment of
    energy and resources on part of the host. This makes the host immune function
    dependent on availability and accessibility of resources. A resource deprived
    host is therefore expected to be more susceptible to infections, although empirical
    results do not always align with this prediction. Limiting host access to resources
    can additionally impact within-host pathogen numbers, either directly by altering
    the amount of resources available to the pathogens for proliferation or indirectly
    by altering the efficiency of the host immune system. We tested for the effects
    of host starvation (complete deprivation of resources) on susceptibility to bacterial
    pathogens, and within-host pathogen proliferation, in Drosophila melanogaster
    females. Our results show that starvation increases post-infection mortality of
    the host, but in a pathogen-specific manner. This increase in mortality is always
    accompanied by increased within-host pathogen proliferation. We therefore propose
    that starvation compromises host resistance to bacterial infections in Drosophila
    melanogaster females thereby increasing susceptibility to infections.
acknowledgement: "The authors thank Tejashwini Hegde for logistical support during
  execution of the experiments reported here. The authors thank Prof. P. Cornelis
  (Vrije Universiteit Brussel, Belgium) for providing the Pseudomonas entomophila
  isolate, Dr. Elio Sucena and Tania Paulo (Instituto Gulbenkian Ciencia, Portugal)
  for providing the Erwinia c. carotovora, and Prof. Brian Lazzaro (Cornell University,
  USA) for providing the Enterococcus faecalis and Providencia rettgeri isolates,
  and Dr. Karan Singh (IISER Mohali, India) for isolating the Staphylococcus succinus
  isolate used in the experiments. The authors also thank Dr. Manas Geeta Arun for
  maintenance of the LH fly populations used in this study.\r\nThe study was funded
  by intra-mural funding from IISER Mohali, India, to NGP. AB was supported by Senior
  Research Fellowship for PhD students from CSIR, Govt. of India. AS was supported
  by Senior Research Fellowship for PhD students from UGC, Govt. of India. SS and
  TM were supported by KVPY fellowships for undergraduate studies from DST, Govt.
  of India."
article_number: '108209'
article_processing_charge: No
article_type: original
author:
- first_name: Aabeer
  full_name: Basu, Aabeer
  last_name: Basu
- first_name: Aparajita
  full_name: Singh, Aparajita
  last_name: Singh
- first_name: Suhaas
  full_name: Sehgal, Suhaas
  last_name: Sehgal
- first_name: Tanvi
  full_name: Madaan, Tanvi
  id: 419917ac-5355-11ee-ae5a-c952babcaad9
  last_name: Madaan
- first_name: Nagaraj Guru
  full_name: Prasad, Nagaraj Guru
  last_name: Prasad
citation:
  ama: Basu A, Singh A, Sehgal S, Madaan T, Prasad NG. Starvation increases susceptibility
    to bacterial infection and promotes systemic pathogen proliferation in Drosophila
    melanogaster females. <i>Journal of Invertebrate Pathology</i>. 2024;207(11).
    doi:<a href="https://doi.org/10.1016/j.jip.2024.108209">10.1016/j.jip.2024.108209</a>
  apa: Basu, A., Singh, A., Sehgal, S., Madaan, T., &#38; Prasad, N. G. (2024). Starvation
    increases susceptibility to bacterial infection and promotes systemic pathogen
    proliferation in Drosophila melanogaster females. <i>Journal of Invertebrate Pathology</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.jip.2024.108209">https://doi.org/10.1016/j.jip.2024.108209</a>
  chicago: Basu, Aabeer, Aparajita Singh, Suhaas Sehgal, Tanvi Madaan, and Nagaraj
    Guru Prasad. “Starvation Increases Susceptibility to Bacterial Infection and Promotes
    Systemic Pathogen Proliferation in Drosophila Melanogaster Females.” <i>Journal
    of Invertebrate Pathology</i>. Elsevier, 2024. <a href="https://doi.org/10.1016/j.jip.2024.108209">https://doi.org/10.1016/j.jip.2024.108209</a>.
  ieee: A. Basu, A. Singh, S. Sehgal, T. Madaan, and N. G. Prasad, “Starvation increases
    susceptibility to bacterial infection and promotes systemic pathogen proliferation
    in Drosophila melanogaster females,” <i>Journal of Invertebrate Pathology</i>,
    vol. 207, no. 11. Elsevier, 2024.
  ista: Basu A, Singh A, Sehgal S, Madaan T, Prasad NG. 2024. Starvation increases
    susceptibility to bacterial infection and promotes systemic pathogen proliferation
    in Drosophila melanogaster females. Journal of Invertebrate Pathology. 207(11),
    108209.
  mla: Basu, Aabeer, et al. “Starvation Increases Susceptibility to Bacterial Infection
    and Promotes Systemic Pathogen Proliferation in Drosophila Melanogaster Females.”
    <i>Journal of Invertebrate Pathology</i>, vol. 207, no. 11, 108209, Elsevier,
    2024, doi:<a href="https://doi.org/10.1016/j.jip.2024.108209">10.1016/j.jip.2024.108209</a>.
  short: A. Basu, A. Singh, S. Sehgal, T. Madaan, N.G. Prasad, Journal of Invertebrate
    Pathology 207 (2024).
corr_author: '1'
date_created: 2024-10-06T22:01:11Z
date_published: 2024-11-01T00:00:00Z
date_updated: 2025-09-08T09:53:50Z
day: '01'
department:
- _id: SyCr
doi: 10.1016/j.jip.2024.108209
external_id:
  isi:
  - '001327816900001'
  pmid:
  - '39322010'
fulldoi: https://doi.org/10.1016/j.jip.2024.108209
intvolume: '       207'
isi: 1
issue: '11'
language:
- iso: eng
month: '11'
oa_version: None
pmid: 1
publication: Journal of Invertebrate Pathology
publication_identifier:
  eissn:
  - 1096-0805
  issn:
  - 0022-2011
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Starvation increases susceptibility to bacterial infection and promotes systemic
  pathogen proliferation in Drosophila melanogaster females
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 207
year: '2024'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '18172'
abstract:
- lang: eng
  text: Red Giant stars host solar-like oscillations which have mixed character, being
    sensitive to conditions both in the outer convection zone and deep within the
    interior. The properties of these modes are sensitive to both core rotation and
    magnetic fields. While asteroseismic studies of the former have been done on a
    large scale, studies of the latter are currently limited to tens of stars. We
    aim to produce the first large catalogue of both magnetic and rotational perturbations.
    We jointly constrain these parameters by devising an automated method for fitting
    the power spectra directly. We successfully apply the method to 302 low-luminosity
    red giants. We find a clear bimodality in core rotation rate. The primary peak
    is at δνrot = 0.32 μHz, and the secondary at δνrot = 0.47 μHz. Combining our results
    with literature values, we find that the percentage of stars rotating much more
    rapidly than the population average increases with evolutionary state. We measure
    magnetic splittings of 2σ significance in 23 stars. While the most extreme magnetic
    splitting values appear in stars with masses > 1.1M⊙, implying they formerly hosted
    a convective core, a small but statistically significant magnetic splitting is
    measured at lower masses. Asymmetry between the frequencies of a rotationally
    split multiplet has previously been used to diagnose the presence of a magnetic
    perturbation. We find that of the stars with a significant detection of magnetic
    perturbation, 43\% do not show strong asymmetry. We find no strong evidence of
    correlation between the rotation and magnetic parameters.
acknowledgement: EJH, WJC, and GRD acknowledge the support of Science and Technology
  Facilities Council. MBN acknowledges support from the UK Space Agency. JMJO acknowledges
  support from NASA through the NASA Hubble Fellowship grant HST-HF2-51517.001, awarded
  by STScI (Space Telescope Science Institute), which is operated by the Association
  of Universities for Research in Astronomy, Incorporated, under NASA contract NAS5-26555.
  The authors acknowledge use of the Blue-BEAR HPC service at the University of Birmingham.
  This paper includes data collected by the Kepler mission and obtained from the MAST
  data archive at the Space Telescope Science Institute (STScI). Funding for the Kepler
  mission was provided by the NASA Science Mission Directorate. This work has made
  use of data from the European Space Agency (ESA) mission Gaia (https://www.cosmos.esa.int/web/gaia),
  processed by the Gaia Data Processing and Analysis Consortium (DPAC, https://www.cosmos.esa.int/web/gaia/dpac/consortium).
  Funding for the DPAC was provided by national institutions, in particular the institutions
  participating in the Gaia Multilateral Agreement. This paper received funding from
  the European Research Council (ERC) under the European Union’s Horizon 2020 research
  and innovation programme (CartographY GA. 804752). SD and JB acknowledge support
  from the Centre National d’Etudes Spatiales (CNES).
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Emily J.
  full_name: Hatt, Emily J.
  last_name: Hatt
- first_name: J. M.Joel
  full_name: Ong, J. M.Joel
  last_name: Ong
- first_name: Martin B.
  full_name: Nielsen, Martin B.
  last_name: Nielsen
- first_name: William J.
  full_name: Chaplin, William J.
  last_name: Chaplin
- first_name: Guy R.
  full_name: Davies, Guy R.
  last_name: Davies
- first_name: Sébastien
  full_name: Deheuvels, Sébastien
  last_name: Deheuvels
- first_name: Jérôme
  full_name: Ballot, Jérôme
  last_name: Ballot
- first_name: Gang
  full_name: Li, Gang
  last_name: Li
- first_name: Lisa Annabelle
  full_name: Bugnet, Lisa Annabelle
  id: d9edb345-f866-11ec-9b37-d119b5234501
  last_name: Bugnet
  orcid: 0000-0003-0142-4000
citation:
  ama: Hatt EJ, Ong JMJ, Nielsen MB, et al. Asteroseismic signatures of core magnetism
    and rotation in hundreds of low-luminosity red giants. <i>Monthly Notices of the
    Royal Astronomical Society</i>. 2024;534(2):1060-1076. doi:<a href="https://doi.org/10.1093/mnras/stae2053">10.1093/mnras/stae2053</a>
  apa: Hatt, E. J., Ong, J. M. J., Nielsen, M. B., Chaplin, W. J., Davies, G. R.,
    Deheuvels, S., … Bugnet, L. A. (2024). Asteroseismic signatures of core magnetism
    and rotation in hundreds of low-luminosity red giants. <i>Monthly Notices of the
    Royal Astronomical Society</i>. Oxford University Press. <a href="https://doi.org/10.1093/mnras/stae2053">https://doi.org/10.1093/mnras/stae2053</a>
  chicago: Hatt, Emily J., J. M.Joel Ong, Martin B. Nielsen, William J. Chaplin, Guy
    R. Davies, Sébastien Deheuvels, Jérôme Ballot, Gang Li, and Lisa Annabelle Bugnet.
    “Asteroseismic Signatures of Core Magnetism and Rotation in Hundreds of Low-Luminosity
    Red Giants.” <i>Monthly Notices of the Royal Astronomical Society</i>. Oxford
    University Press, 2024. <a href="https://doi.org/10.1093/mnras/stae2053">https://doi.org/10.1093/mnras/stae2053</a>.
  ieee: E. J. Hatt <i>et al.</i>, “Asteroseismic signatures of core magnetism and
    rotation in hundreds of low-luminosity red giants,” <i>Monthly Notices of the
    Royal Astronomical Society</i>, vol. 534, no. 2. Oxford University Press, pp.
    1060–1076, 2024.
  ista: Hatt EJ, Ong JMJ, Nielsen MB, Chaplin WJ, Davies GR, Deheuvels S, Ballot J,
    Li G, Bugnet LA. 2024. Asteroseismic signatures of core magnetism and rotation
    in hundreds of low-luminosity red giants. Monthly Notices of the Royal Astronomical
    Society. 534(2), 1060–1076.
  mla: Hatt, Emily J., et al. “Asteroseismic Signatures of Core Magnetism and Rotation
    in Hundreds of Low-Luminosity Red Giants.” <i>Monthly Notices of the Royal Astronomical
    Society</i>, vol. 534, no. 2, Oxford University Press, 2024, pp. 1060–76, doi:<a
    href="https://doi.org/10.1093/mnras/stae2053">10.1093/mnras/stae2053</a>.
  short: E.J. Hatt, J.M.J. Ong, M.B. Nielsen, W.J. Chaplin, G.R. Davies, S. Deheuvels,
    J. Ballot, G. Li, L.A. Bugnet, Monthly Notices of the Royal Astronomical Society
    534 (2024) 1060–1076.
date_created: 2024-10-06T22:01:11Z
date_published: 2024-10-01T00:00:00Z
date_updated: 2025-09-08T09:53:01Z
day: '01'
ddc:
- '520'
department:
- _id: LiBu
doi: 10.1093/mnras/stae2053
external_id:
  arxiv:
  - '2409.01157'
  isi:
  - '001320536900011'
file:
- access_level: open_access
  checksum: b79f3c6a5991516abbcc8d34fa4bfb5f
  content_type: application/pdf
  creator: dernst
  date_created: 2024-10-07T09:14:03Z
  date_updated: 2024-10-07T09:14:03Z
  file_id: '18182'
  file_name: 2024_MonthlyNRoyalAstronSoc_Hatt.pdf
  file_size: 2813008
  relation: main_file
  success: 1
file_date_updated: 2024-10-07T09:14:03Z
fulldoi: https://doi.org/10.1093/mnras/stae2053
has_accepted_license: '1'
intvolume: '       534'
isi: 1
issue: '2'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 1060-1076
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
  eissn:
  - 1365-2966
  issn:
  - 0035-8711
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Asteroseismic signatures of core magnetism and rotation in hundreds of low-luminosity
  red giants
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 534
year: '2024'
...
---
_id: '18175'
abstract:
- lang: eng
  text: Large-scale software repositories are a source of insights for software engineering.
    They offer an unmatched window into the software development process at scale.
    Their sheer number and size holds the promise of broadly applicable results. At
    the same time, that very size presents practical challenges for scaling tools
    and algorithms to millions of projects. A reasonable approach is to limit studies
    to representative samples of the population of interest. Broadly applicable conclusions
    can then be obtained by generalizing to the entire population. The contribution
    of this paper is a standardized experimental design methodology for choosing the
    inputs of studies working with large-scale repositories. We advocate for a methodology
    that clearly lays out what the population of interest is, how to sample it, and
    that fosters reproducibility. Along the way, we discourage researchers from using
    extrinsic attributes of projects such as stars, that measure some unclear notion
    of popularity.
acknowledgement: "This work was supported by the Czech Ministry of Education, Youth
  and Sports under\r\nprogram ERC-CZ, grant agreement LL2325, BigCode (reg. no. CZ.02.1.01/0.0/0.0/15_003/0000421).
  NSF grants CCF-1910850, CNS-1925644, and CCF-2139612, as well as the GACR EXPRO
  grant 23-07580X. We would like to thank Digital Ocean for their involuntary contribution
  of computational resources during the early data gathering phase of our research.
  We acknoweldge the reviewers of ICSE’22, and thank the reviewers of ECOOP’23 for
  their encouragments and for sticking around until 2024."
alternative_title:
- LIPIcs
article_number: '27'
article_processing_charge: No
author:
- first_name: Petr
  full_name: Maj, Petr
  last_name: Maj
- first_name: Stefanie
  full_name: Muroya Lei, Stefanie
  id: a376de31-8972-11ed-ae7b-d0251c13c8ff
  last_name: Muroya Lei
- first_name: Konrad
  full_name: Siek, Konrad
  last_name: Siek
- first_name: Luca
  full_name: Di Grazia, Luca
  last_name: Di Grazia
- first_name: Jan
  full_name: Vitek, Jan
  last_name: Vitek
citation:
  ama: 'Maj P, Muroya Lei S, Siek K, Di Grazia L, Vitek J. The fault in our stars:
    Designing reproducible large-scale code analysis experiments. In: <i>38th European
    Conference on Object-Oriented Programming</i>. Vol 313. Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik; 2024. doi:<a href="https://doi.org/10.4230/LIPIcs.ECOOP.2024.27">10.4230/LIPIcs.ECOOP.2024.27</a>'
  apa: 'Maj, P., Muroya Lei, S., Siek, K., Di Grazia, L., &#38; Vitek, J. (2024).
    The fault in our stars: Designing reproducible large-scale code analysis experiments.
    In <i>38th European Conference on Object-Oriented Programming</i> (Vol. 313).
    Vienna, Austria: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPIcs.ECOOP.2024.27">https://doi.org/10.4230/LIPIcs.ECOOP.2024.27</a>'
  chicago: 'Maj, Petr, Stefanie Muroya Lei, Konrad Siek, Luca Di Grazia, and Jan Vitek.
    “The Fault in Our Stars: Designing Reproducible Large-Scale Code Analysis Experiments.”
    In <i>38th European Conference on Object-Oriented Programming</i>, Vol. 313. Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2024. <a href="https://doi.org/10.4230/LIPIcs.ECOOP.2024.27">https://doi.org/10.4230/LIPIcs.ECOOP.2024.27</a>.'
  ieee: 'P. Maj, S. Muroya Lei, K. Siek, L. Di Grazia, and J. Vitek, “The fault in
    our stars: Designing reproducible large-scale code analysis experiments,” in <i>38th
    European Conference on Object-Oriented Programming</i>, Vienna, Austria, 2024,
    vol. 313.'
  ista: 'Maj P, Muroya Lei S, Siek K, Di Grazia L, Vitek J. 2024. The fault in our
    stars: Designing reproducible large-scale code analysis experiments. 38th European
    Conference on Object-Oriented Programming. ECOOP: European Conference on Object-Oriented
    Programming, LIPIcs, vol. 313, 27.'
  mla: 'Maj, Petr, et al. “The Fault in Our Stars: Designing Reproducible Large-Scale
    Code Analysis Experiments.” <i>38th European Conference on Object-Oriented Programming</i>,
    vol. 313, 27, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2024, doi:<a
    href="https://doi.org/10.4230/LIPIcs.ECOOP.2024.27">10.4230/LIPIcs.ECOOP.2024.27</a>.'
  short: P. Maj, S. Muroya Lei, K. Siek, L. Di Grazia, J. Vitek, in:, 38th European
    Conference on Object-Oriented Programming, Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2024.
conference:
  end_date: 2024-09-20
  location: Vienna, Austria
  name: 'ECOOP: European Conference on Object-Oriented Programming'
  start_date: 2024-09-16
date_created: 2024-10-06T22:01:12Z
date_published: 2024-09-01T00:00:00Z
date_updated: 2025-12-02T13:48:19Z
day: '01'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.4230/LIPIcs.ECOOP.2024.27
external_id:
  isi:
  - '001533999700027'
file:
- access_level: open_access
  checksum: 2e75d305a8c817d76a0c7f136ce34f86
  content_type: application/pdf
  creator: dernst
  date_created: 2024-10-07T11:10:55Z
  date_updated: 2024-10-07T11:10:55Z
  file_id: '18184'
  file_name: 2024_LIPICs_Maj.pdf
  file_size: 1764222
  relation: main_file
  success: 1
file_date_updated: 2024-10-07T11:10:55Z
fulldoi: https://doi.org/10.4230/LIPIcs.ECOOP.2024.27
has_accepted_license: '1'
intvolume: '       313'
isi: 1
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
publication: 38th European Conference on Object-Oriented Programming
publication_identifier:
  isbn:
  - '9783959773416'
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The fault in our stars: Designing reproducible large-scale code analysis experiments'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 313
year: '2024'
...
