---
_id: '12104'
abstract:
- lang: eng
  text: We study ergodic decompositions of Dirichlet spaces under intertwining via
    unitary order isomorphisms. We show that the ergodic decomposition of a quasi-regular
    Dirichlet space is unique up to a unique isomorphism of the indexing space. Furthermore,
    every unitary order isomorphism intertwining two quasi-regular Dirichlet spaces
    is decomposable over their ergodic decompositions up to conjugation via an isomorphism
    of the corresponding indexing spaces.
acknowledgement: Research supported by the Austrian Science Fund (FWF) grant F65 at
  the Institute of Science and Technology Austria and by the European Research Council
  (ERC) (Grant agreement No. 716117 awarded to Prof. Dr. Jan Maas). L.D.S. gratefully
  acknowledges funding of his current position by the Austrian Science Fund (FWF)
  through the ESPRIT Programme (Grant No. 208). M.W. gratefully acknowledges funding
  of his current position by the Austrian Science Fund (FWF) through the ESPRIT Programme
  (Grant No. 156).
article_number: '9'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Lorenzo
  full_name: Dello Schiavo, Lorenzo
  id: ECEBF480-9E4F-11EA-B557-B0823DDC885E
  last_name: Dello Schiavo
  orcid: 0000-0002-9881-6870
- first_name: Melchior
  full_name: Wirth, Melchior
  id: 88644358-0A0E-11EA-8FA5-49A33DDC885E
  last_name: Wirth
  orcid: 0000-0002-0519-4241
citation:
  ama: Dello Schiavo L, Wirth M. Ergodic decompositions of Dirichlet forms under order
    isomorphisms. <i>Journal of Evolution Equations</i>. 2023;23(1). doi:<a href="https://doi.org/10.1007/s00028-022-00859-7">10.1007/s00028-022-00859-7</a>
  apa: Dello Schiavo, L., &#38; Wirth, M. (2023). Ergodic decompositions of Dirichlet
    forms under order isomorphisms. <i>Journal of Evolution Equations</i>. Springer
    Nature. <a href="https://doi.org/10.1007/s00028-022-00859-7">https://doi.org/10.1007/s00028-022-00859-7</a>
  chicago: Dello Schiavo, Lorenzo, and Melchior Wirth. “Ergodic Decompositions of
    Dirichlet Forms under Order Isomorphisms.” <i>Journal of Evolution Equations</i>.
    Springer Nature, 2023. <a href="https://doi.org/10.1007/s00028-022-00859-7">https://doi.org/10.1007/s00028-022-00859-7</a>.
  ieee: L. Dello Schiavo and M. Wirth, “Ergodic decompositions of Dirichlet forms
    under order isomorphisms,” <i>Journal of Evolution Equations</i>, vol. 23, no.
    1. Springer Nature, 2023.
  ista: Dello Schiavo L, Wirth M. 2023. Ergodic decompositions of Dirichlet forms
    under order isomorphisms. Journal of Evolution Equations. 23(1), 9.
  mla: Dello Schiavo, Lorenzo, and Melchior Wirth. “Ergodic Decompositions of Dirichlet
    Forms under Order Isomorphisms.” <i>Journal of Evolution Equations</i>, vol. 23,
    no. 1, 9, Springer Nature, 2023, doi:<a href="https://doi.org/10.1007/s00028-022-00859-7">10.1007/s00028-022-00859-7</a>.
  short: L. Dello Schiavo, M. Wirth, Journal of Evolution Equations 23 (2023).
corr_author: '1'
date_created: 2023-01-08T23:00:53Z
date_published: 2023-01-01T00:00:00Z
date_updated: 2025-04-23T08:45:56Z
day: '01'
ddc:
- '510'
department:
- _id: JaMa
doi: 10.1007/s00028-022-00859-7
ec_funded: 1
external_id:
  isi:
  - '000906214600004'
  pmid:
  - '36597554'
file:
- access_level: open_access
  checksum: 1f34f3e2cb521033de6154f274ea3a4e
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-20T10:45:06Z
  date_updated: 2023-01-20T10:45:06Z
  file_id: '12325'
  file_name: 2023_JourEvolutionEquations_DelloSchiavo.pdf
  file_size: 422612
  relation: main_file
  success: 1
file_date_updated: 2023-01-20T10:45:06Z
has_accepted_license: '1'
intvolume: '        23'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
  grant_number: F6504
  name: Taming Complexity in Partial Differential Systems
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '716117'
  name: Optimal Transport and Stochastic Dynamics
- _id: 34dbf174-11ca-11ed-8bc3-afe9d43d4b9c
  grant_number: E208
  name: Configuration Spaces over Non-Smooth Spaces
- _id: 34c6ea2d-11ca-11ed-8bc3-c04f3c502833
  grant_number: ESP156_N
  name: Gradient flow techniques for quantum Markov semigroups
publication: Journal of Evolution Equations
publication_identifier:
  eissn:
  - 1424-3202
  issn:
  - 1424-3199
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Ergodic decompositions of Dirichlet forms under order isomorphisms
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 23
year: '2023'
...
---
_id: '12105'
abstract:
- lang: eng
  text: Data-driven dimensionality reduction methods such as proper orthogonal decomposition
    and dynamic mode decomposition have proven to be useful for exploring complex
    phenomena within fluid dynamics and beyond. A well-known challenge for these techniques
    is posed by the continuous symmetries, e.g. translations and rotations, of the
    system under consideration, as drifts in the data dominate the modal expansions
    without providing an insight into the dynamics of the problem. In the present
    study, we address this issue for fluid flows in rectangular channels by formulating
    a continuous symmetry reduction method that eliminates the translations in the
    streamwise and spanwise directions simultaneously. We demonstrate our method by
    computing the symmetry-reduced dynamic mode decomposition (SRDMD) of sliding windows
    of data obtained from the transitional plane-Couette and turbulent plane-Poiseuille
    flow simulations. In the former setting, SRDMD captures the dynamics in the vicinity
    of the invariant solutions with translation symmetries, i.e. travelling waves
    and relative periodic orbits, whereas in the latter, our calculations reveal episodes
    of turbulent time evolution that can be approximated by a low-dimensional linear
    expansion.
acknowledgement: "E.M. acknowledges funding from the ISTplus fellowship programme.
  G.Y. and B.H. acknowledge\r\na grant from the Simons Foundation (662960, BH)."
article_number: A10
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Elena
  full_name: Marensi, Elena
  id: 0BE7553A-1004-11EA-B805-18983DDC885E
  last_name: Marensi
  orcid: 0000-0001-7173-4923
- first_name: Gökhan
  full_name: Yalniz, Gökhan
  id: 66E74FA2-D8BF-11E9-8249-8DE2E5697425
  last_name: Yalniz
  orcid: 0000-0002-8490-9312
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
- first_name: Nazmi B
  full_name: Budanur, Nazmi B
  id: 3EA1010E-F248-11E8-B48F-1D18A9856A87
  last_name: Budanur
  orcid: 0000-0003-0423-5010
citation:
  ama: Marensi E, Yalniz G, Hof B, Budanur NB. Symmetry-reduced dynamic mode decomposition
    of near-wall turbulence. <i>Journal of Fluid Mechanics</i>. 2023;954. doi:<a href="https://doi.org/10.1017/jfm.2022.1001">10.1017/jfm.2022.1001</a>
  apa: Marensi, E., Yalniz, G., Hof, B., &#38; Budanur, N. B. (2023). Symmetry-reduced
    dynamic mode decomposition of near-wall turbulence. <i>Journal of Fluid Mechanics</i>.
    Cambridge University Press. <a href="https://doi.org/10.1017/jfm.2022.1001">https://doi.org/10.1017/jfm.2022.1001</a>
  chicago: Marensi, Elena, Gökhan Yalniz, Björn Hof, and Nazmi B Budanur. “Symmetry-Reduced
    Dynamic Mode Decomposition of near-Wall Turbulence.” <i>Journal of Fluid Mechanics</i>.
    Cambridge University Press, 2023. <a href="https://doi.org/10.1017/jfm.2022.1001">https://doi.org/10.1017/jfm.2022.1001</a>.
  ieee: E. Marensi, G. Yalniz, B. Hof, and N. B. Budanur, “Symmetry-reduced dynamic
    mode decomposition of near-wall turbulence,” <i>Journal of Fluid Mechanics</i>,
    vol. 954. Cambridge University Press, 2023.
  ista: Marensi E, Yalniz G, Hof B, Budanur NB. 2023. Symmetry-reduced dynamic mode
    decomposition of near-wall turbulence. Journal of Fluid Mechanics. 954, A10.
  mla: Marensi, Elena, et al. “Symmetry-Reduced Dynamic Mode Decomposition of near-Wall
    Turbulence.” <i>Journal of Fluid Mechanics</i>, vol. 954, A10, Cambridge University
    Press, 2023, doi:<a href="https://doi.org/10.1017/jfm.2022.1001">10.1017/jfm.2022.1001</a>.
  short: E. Marensi, G. Yalniz, B. Hof, N.B. Budanur, Journal of Fluid Mechanics 954
    (2023).
corr_author: '1'
date_created: 2023-01-08T23:00:53Z
date_published: 2023-01-10T00:00:00Z
date_updated: 2026-04-07T11:47:05Z
day: '10'
ddc:
- '530'
department:
- _id: BjHo
doi: 10.1017/jfm.2022.1001
external_id:
  arxiv:
  - '2101.07516'
  isi:
  - '000903336600001'
file:
- access_level: open_access
  checksum: 9224f987caefe5dd85a70814d3cce65c
  content_type: application/pdf
  creator: dernst
  date_created: 2023-02-02T12:34:54Z
  date_updated: 2023-02-02T12:34:54Z
  file_id: '12489'
  file_name: 2023_JourFluidMechanics_Marensi.pdf
  file_size: 1931647
  relation: main_file
  success: 1
file_date_updated: 2023-02-02T12:34:54Z
has_accepted_license: '1'
intvolume: '       954'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 238598C6-32DE-11EA-91FC-C7463DDC885E
  grant_number: '662960'
  name: Revisiting the Turbulence Problem Using Statistical Mechanics
publication: Journal of Fluid Mechanics
publication_identifier:
  eissn:
  - 1469-7645
  issn:
  - 0022-1120
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
related_material:
  record:
  - id: '19684'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Symmetry-reduced dynamic mode decomposition of near-wall turbulence
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 954
year: '2023'
...
---
OA_type: closed access
_id: '12113'
abstract:
- lang: eng
  text: The power factor of poly(3,4-ethylenedioxythiophene):poly(styrene sulfonate)
    (PEDOT:PSS) film can be significantly improved by optimizing the oxidation level
    of the film in oxidation and reduction processes. However, precise control over
    the oxidation and reduction effects in PEDOT:PSS remains a challenge, which greatly
    sacrifices both S and σ. Here, we propose a two-step post-treatment using a mixture
    of ethylene glycol (EG) and Arginine (Arg) and sulfuric acid (H2SO4) in sequence
    to engineer high-performance PEDOT:PSS thermoelectric films. The high-polarity
    EG dopant removes the excess non-ionized PSS and induces benzenoid-to-quinoid
    conformational change in the PEDOT:PSS films. In particular, basic amino acid
    Arg tunes the oxidation level of PEDOT:PSS and prevents the films from over-oxidation
    during H2SO4 post-treatment, leading to increased S. The following H2SO4 post-treatment
    further induces highly orientated lamellar stacking microstructures to increase
    σ, yielding a maximum power factor of 170.6 μW m−1 K−2 at 460 K. Moreover, a novel
    trigonal-shape thermoelectric device is designed and assembled by the as-prepared
    PEDOT:PSS films in order to harvest heat via a vertical temperature gradient.
    An output power density of 33 μW cm−2 is generated at a temperature difference
    of 40 K, showing the potential application for low-grade wearable electronic devices.
acknowledgement: Scientific Research Program Funded by Shaanxi Provincial Education
  Department (Program No.22JY012), Natural Science Basic Research Program of Shaanxi
  (Grant No.2022JZ-31), Young Talent fund of University Association for Science and
  Technology in Shaanxi, China (Grant No.20210411), China Postdoctoral Science Foundation
  (Grant No. 2021M692621), the Foundation of Shaanxi University of Science & Technology
  (Grant No. 2017GBJ-03), Open Foundation of Key Laboratory of Auxiliary Chemistry
  and Technology for Chemical Industry, Ministry of Education, Shaanxi University
  of Science and Technology (Grant No. KFKT2022-15), and Open Foundation of Shaanxi
  Collaborative Innovation Center of Industrial Auxiliary Chemistry and Technology,
  Shaanxi University of Science and Technology (Grant No. KFKT2022-15).
article_number: '156101'
article_processing_charge: No
article_type: original
author:
- first_name: Li
  full_name: Zhang, Li
  last_name: Zhang
- first_name: Xingyu
  full_name: Liu, Xingyu
  last_name: Liu
- first_name: Ting
  full_name: Wu, Ting
  last_name: Wu
- first_name: Shengduo
  full_name: Xu, Shengduo
  id: 12ab8624-4c8a-11ec-9e11-e1ac2438f22f
  last_name: Xu
- first_name: Guoquan
  full_name: Suo, Guoquan
  last_name: Suo
- first_name: Xiaohui
  full_name: Ye, Xiaohui
  last_name: Ye
- first_name: Xiaojiang
  full_name: Hou, Xiaojiang
  last_name: Hou
- first_name: Yanling
  full_name: Yang, Yanling
  last_name: Yang
- first_name: Qingfeng
  full_name: Liu, Qingfeng
  last_name: Liu
- first_name: Hongqiang
  full_name: Wang, Hongqiang
  last_name: Wang
citation:
  ama: Zhang L, Liu X, Wu T, et al. Two-step post-treatment to deliver high performance
    thermoelectric device with vertical temperature gradient. <i>Applied Surface Science</i>.
    2023;613. doi:<a href="https://doi.org/10.1016/j.apsusc.2022.156101">10.1016/j.apsusc.2022.156101</a>
  apa: Zhang, L., Liu, X., Wu, T., Xu, S., Suo, G., Ye, X., … Wang, H. (2023). Two-step
    post-treatment to deliver high performance thermoelectric device with vertical
    temperature gradient. <i>Applied Surface Science</i>. Elsevier. <a href="https://doi.org/10.1016/j.apsusc.2022.156101">https://doi.org/10.1016/j.apsusc.2022.156101</a>
  chicago: Zhang, Li, Xingyu Liu, Ting Wu, Shengduo Xu, Guoquan Suo, Xiaohui Ye, Xiaojiang
    Hou, Yanling Yang, Qingfeng Liu, and Hongqiang Wang. “Two-Step Post-Treatment
    to Deliver High Performance Thermoelectric Device with Vertical Temperature Gradient.”
    <i>Applied Surface Science</i>. Elsevier, 2023. <a href="https://doi.org/10.1016/j.apsusc.2022.156101">https://doi.org/10.1016/j.apsusc.2022.156101</a>.
  ieee: L. Zhang <i>et al.</i>, “Two-step post-treatment to deliver high performance
    thermoelectric device with vertical temperature gradient,” <i>Applied Surface
    Science</i>, vol. 613. Elsevier, 2023.
  ista: Zhang L, Liu X, Wu T, Xu S, Suo G, Ye X, Hou X, Yang Y, Liu Q, Wang H. 2023.
    Two-step post-treatment to deliver high performance thermoelectric device with
    vertical temperature gradient. Applied Surface Science. 613, 156101.
  mla: Zhang, Li, et al. “Two-Step Post-Treatment to Deliver High Performance Thermoelectric
    Device with Vertical Temperature Gradient.” <i>Applied Surface Science</i>, vol.
    613, 156101, Elsevier, 2023, doi:<a href="https://doi.org/10.1016/j.apsusc.2022.156101">10.1016/j.apsusc.2022.156101</a>.
  short: L. Zhang, X. Liu, T. Wu, S. Xu, G. Suo, X. Ye, X. Hou, Y. Yang, Q. Liu, H.
    Wang, Applied Surface Science 613 (2023).
date_created: 2023-01-12T11:55:02Z
date_published: 2023-03-15T00:00:00Z
date_updated: 2025-01-09T07:35:04Z
day: '15'
department:
- _id: MaIb
doi: 10.1016/j.apsusc.2022.156101
external_id:
  isi:
  - '000911497000001'
intvolume: '       613'
isi: 1
keyword:
- Surfaces
- Coatings and Films
- Condensed Matter Physics
- Surfaces and Interfaces
- General Physics and Astronomy
- General Chemistry
language:
- iso: eng
month: '03'
oa_version: None
publication: Applied Surface Science
publication_identifier:
  issn:
  - 0169-4332
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Two-step post-treatment to deliver high performance thermoelectric device with
  vertical temperature gradient
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 613
year: '2023'
...
---
_id: '12115'
acknowledgement: This work was supported by European Commission’s Seventh Framework
  Programme under Grant Agreement No. 279113 (OCTIPS; www.octips.eu).
article_processing_charge: No
article_type: original
author:
- first_name: Jacek
  full_name: Glajzer, Jacek
  last_name: Glajzer
- first_name: Dan Cacsire
  full_name: Castillo-Tong, Dan Cacsire
  last_name: Castillo-Tong
- first_name: Rolf
  full_name: Richter, Rolf
  last_name: Richter
- first_name: Ignace
  full_name: Vergote, Ignace
  last_name: Vergote
- first_name: Hagen
  full_name: Kulbe, Hagen
  last_name: Kulbe
- first_name: Adriaan
  full_name: Vanderstichele, Adriaan
  last_name: Vanderstichele
- first_name: Ilary
  full_name: Ruscito, Ilary
  last_name: Ruscito
- first_name: Fabian
  full_name: Trillsch, Fabian
  last_name: Trillsch
- first_name: Alexander
  full_name: Mustea, Alexander
  last_name: Mustea
- first_name: Caroline
  full_name: Kreuzinger, Caroline
  id: 382077BA-F248-11E8-B48F-1D18A9856A87
  last_name: Kreuzinger
- first_name: Charlie
  full_name: Gourley, Charlie
  last_name: Gourley
- first_name: Hani
  full_name: Gabra, Hani
  last_name: Gabra
- first_name: Eliane T.
  full_name: Taube, Eliane T.
  last_name: Taube
- first_name: Oliver
  full_name: Dorigo, Oliver
  last_name: Dorigo
- first_name: David
  full_name: Horst, David
  last_name: Horst
- first_name: Carlotta
  full_name: Keunecke, Carlotta
  last_name: Keunecke
- first_name: Joanna
  full_name: Baum, Joanna
  last_name: Baum
- first_name: Timothy
  full_name: Angelotti, Timothy
  last_name: Angelotti
- first_name: Jalid
  full_name: Sehouli, Jalid
  last_name: Sehouli
- first_name: Elena Ioana
  full_name: Braicu, Elena Ioana
  last_name: Braicu
citation:
  ama: 'Glajzer J, Castillo-Tong DC, Richter R, et al. ASO Visual Abstract: Impact
    of BRCA mutation status on tumor dissemination pattern, surgical outcome, and
    patient survival in primary and recurrent high-grade serous ovarian cancer (HGSOC).
    A multicenter, retrospective study of the ovarian cancer therapy—innovative models
    prolong survival (OCTIPS) consortium. <i>Annals of Surgical Oncology</i>. 2023;30:46-47.
    doi:<a href="https://doi.org/10.1245/s10434-022-12681-z">10.1245/s10434-022-12681-z</a>'
  apa: 'Glajzer, J., Castillo-Tong, D. C., Richter, R., Vergote, I., Kulbe, H., Vanderstichele,
    A., … Braicu, E. I. (2023). ASO Visual Abstract: Impact of BRCA mutation status
    on tumor dissemination pattern, surgical outcome, and patient survival in primary
    and recurrent high-grade serous ovarian cancer (HGSOC). A multicenter, retrospective
    study of the ovarian cancer therapy—innovative models prolong survival (OCTIPS)
    consortium. <i>Annals of Surgical Oncology</i>. Springer Nature. <a href="https://doi.org/10.1245/s10434-022-12681-z">https://doi.org/10.1245/s10434-022-12681-z</a>'
  chicago: 'Glajzer, Jacek, Dan Cacsire Castillo-Tong, Rolf Richter, Ignace Vergote,
    Hagen Kulbe, Adriaan Vanderstichele, Ilary Ruscito, et al. “ASO Visual Abstract:
    Impact of BRCA Mutation Status on Tumor Dissemination Pattern, Surgical Outcome,
    and Patient Survival in Primary and Recurrent High-Grade Serous Ovarian Cancer
    (HGSOC). A Multicenter, Retrospective Study of the Ovarian Cancer Therapy—Innovative
    Models Prolong Survival (OCTIPS) Consortium.” <i>Annals of Surgical Oncology</i>.
    Springer Nature, 2023. <a href="https://doi.org/10.1245/s10434-022-12681-z">https://doi.org/10.1245/s10434-022-12681-z</a>.'
  ieee: 'J. Glajzer <i>et al.</i>, “ASO Visual Abstract: Impact of BRCA mutation status
    on tumor dissemination pattern, surgical outcome, and patient survival in primary
    and recurrent high-grade serous ovarian cancer (HGSOC). A multicenter, retrospective
    study of the ovarian cancer therapy—innovative models prolong survival (OCTIPS)
    consortium,” <i>Annals of Surgical Oncology</i>, vol. 30. Springer Nature, pp.
    46–47, 2023.'
  ista: 'Glajzer J, Castillo-Tong DC, Richter R, Vergote I, Kulbe H, Vanderstichele
    A, Ruscito I, Trillsch F, Mustea A, Kreuzinger C, Gourley C, Gabra H, Taube ET,
    Dorigo O, Horst D, Keunecke C, Baum J, Angelotti T, Sehouli J, Braicu EI. 2023.
    ASO Visual Abstract: Impact of BRCA mutation status on tumor dissemination pattern,
    surgical outcome, and patient survival in primary and recurrent high-grade serous
    ovarian cancer (HGSOC). A multicenter, retrospective study of the ovarian cancer
    therapy—innovative models prolong survival (OCTIPS) consortium. Annals of Surgical
    Oncology. 30, 46–47.'
  mla: 'Glajzer, Jacek, et al. “ASO Visual Abstract: Impact of BRCA Mutation Status
    on Tumor Dissemination Pattern, Surgical Outcome, and Patient Survival in Primary
    and Recurrent High-Grade Serous Ovarian Cancer (HGSOC). A Multicenter, Retrospective
    Study of the Ovarian Cancer Therapy—Innovative Models Prolong Survival (OCTIPS)
    Consortium.” <i>Annals of Surgical Oncology</i>, vol. 30, Springer Nature, 2023,
    pp. 46–47, doi:<a href="https://doi.org/10.1245/s10434-022-12681-z">10.1245/s10434-022-12681-z</a>.'
  short: J. Glajzer, D.C. Castillo-Tong, R. Richter, I. Vergote, H. Kulbe, A. Vanderstichele,
    I. Ruscito, F. Trillsch, A. Mustea, C. Kreuzinger, C. Gourley, H. Gabra, E.T.
    Taube, O. Dorigo, D. Horst, C. Keunecke, J. Baum, T. Angelotti, J. Sehouli, E.I.
    Braicu, Annals of Surgical Oncology 30 (2023) 46–47.
date_created: 2023-01-12T11:56:22Z
date_published: 2023-01-01T00:00:00Z
date_updated: 2026-06-18T17:21:25Z
day: '01'
ddc:
- '570'
department:
- _id: JoDa
doi: 10.1245/s10434-022-12681-z
external_id:
  isi:
  - '000879151800001'
intvolume: '        30'
isi: 1
keyword:
- Oncology
- Surgery
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1245/s10434-022-12681-z
month: '01'
oa: 1
oa_version: Published Version
page: 46-47
publication: Annals of Surgical Oncology
publication_identifier:
  eissn:
  - 1534-4681
  issn:
  - 1068-9265
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  record:
  - id: '12205'
    relation: other
    status: public
scopus_import: '1'
status: public
title: 'ASO Visual Abstract: Impact of BRCA mutation status on tumor dissemination
  pattern, surgical outcome, and patient survival in primary and recurrent high-grade
  serous ovarian cancer (HGSOC). A multicenter, retrospective study of the ovarian
  cancer therapy—innovative models prolong survival (OCTIPS) consortium'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 30
year: '2023'
...
---
_id: '12162'
abstract:
- lang: eng
  text: Homeostatic balance in the intestinal epithelium relies on a fast cellular
    turnover, which is coordinated by an intricate interplay between biochemical signalling,
    mechanical forces and organ geometry. We review recent modelling approaches that
    have been developed to understand different facets of this remarkable homeostatic
    equilibrium. Existing models offer different, albeit complementary, perspectives
    on the problem. First, biomechanical models aim to explain the local and global
    mechanical stresses driving cell renewal as well as tissue shape maintenance.
    Second, compartmental models provide insights into the conditions necessary to
    keep a constant flow of cells with well-defined ratios of cell types, and how
    perturbations can lead to an unbalance of relative compartment sizes. A third
    family of models address, at the cellular level, the nature and regulation of
    stem fate choices that are necessary to fuel cellular turnover. We also review
    how these different approaches are starting to be integrated together across scales,
    to provide quantitative predictions and new conceptual frameworks to think about
    the dynamics of cell renewal in complex tissues.
acknowledgement: "This work received funding from the ERC under the European Union’s
  Horizon 2020 research and innovation programme (grant agreement No. 851288 to E.H.).\r\nB.
  C-M wants to acknowledge the support of the field of excellence Complexity of Life,
  in Basic Research and Innovation of the University of Graz."
article_processing_charge: Yes (via OA deal)
article_type: review
author:
- first_name: Bernat
  full_name: Corominas-Murtra, Bernat
  id: 43BE2298-F248-11E8-B48F-1D18A9856A87
  last_name: Corominas-Murtra
  orcid: 0000-0001-9806-5643
- first_name: Edouard B
  full_name: Hannezo, Edouard B
  id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
  last_name: Hannezo
  orcid: 0000-0001-6005-1561
citation:
  ama: Corominas-Murtra B, Hannezo EB. Modelling the dynamics of mammalian gut homeostasis.
    <i>Seminars in Cell &#38; Developmental Biology</i>. 2023;150-151:58-65. doi:<a
    href="https://doi.org/10.1016/j.semcdb.2022.11.005">10.1016/j.semcdb.2022.11.005</a>
  apa: Corominas-Murtra, B., &#38; Hannezo, E. B. (2023). Modelling the dynamics of
    mammalian gut homeostasis. <i>Seminars in Cell &#38; Developmental Biology</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.semcdb.2022.11.005">https://doi.org/10.1016/j.semcdb.2022.11.005</a>
  chicago: Corominas-Murtra, Bernat, and Edouard B Hannezo. “Modelling the Dynamics
    of Mammalian Gut Homeostasis.” <i>Seminars in Cell &#38; Developmental Biology</i>.
    Elsevier, 2023. <a href="https://doi.org/10.1016/j.semcdb.2022.11.005">https://doi.org/10.1016/j.semcdb.2022.11.005</a>.
  ieee: B. Corominas-Murtra and E. B. Hannezo, “Modelling the dynamics of mammalian
    gut homeostasis,” <i>Seminars in Cell &#38; Developmental Biology</i>, vol. 150–151.
    Elsevier, pp. 58–65, 2023.
  ista: Corominas-Murtra B, Hannezo EB. 2023. Modelling the dynamics of mammalian
    gut homeostasis. Seminars in Cell &#38; Developmental Biology. 150–151, 58–65.
  mla: Corominas-Murtra, Bernat, and Edouard B. Hannezo. “Modelling the Dynamics of
    Mammalian Gut Homeostasis.” <i>Seminars in Cell &#38; Developmental Biology</i>,
    vol. 150–151, Elsevier, 2023, pp. 58–65, doi:<a href="https://doi.org/10.1016/j.semcdb.2022.11.005">10.1016/j.semcdb.2022.11.005</a>.
  short: B. Corominas-Murtra, E.B. Hannezo, Seminars in Cell &#38; Developmental Biology
    150–151 (2023) 58–65.
corr_author: '1'
date_created: 2023-01-12T12:09:47Z
date_published: 2023-12-02T00:00:00Z
date_updated: 2025-04-14T07:52:27Z
day: '02'
ddc:
- '570'
department:
- _id: EdHa
doi: 10.1016/j.semcdb.2022.11.005
ec_funded: 1
external_id:
  isi:
  - '001053522200001'
  pmid:
  - '36470715'
file:
- access_level: open_access
  checksum: c619887cf130f4649bf3035417186004
  content_type: application/pdf
  creator: dernst
  date_created: 2024-01-08T10:16:04Z
  date_updated: 2024-01-08T10:16:04Z
  file_id: '14741'
  file_name: 2023_SeminarsCellDevBiology_CorominasMurtra.pdf
  file_size: 1343750
  relation: main_file
  success: 1
file_date_updated: 2024-01-08T10:16:04Z
has_accepted_license: '1'
isi: 1
keyword:
- Cell Biology
- Developmental Biology
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 58-65
pmid: 1
project:
- _id: 05943252-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '851288'
  name: Design Principles of Branching Morphogenesis
publication: Seminars in Cell & Developmental Biology
publication_identifier:
  issn:
  - 1084-9521
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Modelling the dynamics of mammalian gut homeostasis
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 150-151
year: '2023'
...
---
_id: '12163'
abstract:
- lang: eng
  text: Small GTPases play essential roles in the organization of eukaryotic cells.
    In recent years, it has become clear that their intracellular functions result
    from intricate biochemical networks of the GTPase and their regulators that dynamically
    bind to a membrane surface. Due to the inherent complexities of their interactions,
    however, revealing the underlying mechanisms of action is often difficult to achieve
    from in vivo studies. This review summarizes in vitro reconstitution approaches
    developed to obtain a better mechanistic understanding of how small GTPase activities
    are regulated in space and time.
acknowledgement: The authors acknowledge support from IST Austria and helpful comments
  from the anonymous reviewers that helped to improve this manuscript. We apologize
  to the authors of primary literature and outstanding research not cited here due
  to space restraints.
article_processing_charge: Yes (via OA deal)
article_type: review
author:
- first_name: Martin
  full_name: Loose, Martin
  id: 462D4284-F248-11E8-B48F-1D18A9856A87
  last_name: Loose
  orcid: 0000-0001-7309-9724
- first_name: Albert
  full_name: Auer, Albert
  id: 3018E8C2-F248-11E8-B48F-1D18A9856A87
  last_name: Auer
  orcid: 0000-0002-3580-2906
- first_name: Gabriel
  full_name: Brognara, Gabriel
  id: D96FFDA0-A884-11E9-9968-DC26E6697425
  last_name: Brognara
- first_name: Hanifatul R
  full_name: Budiman, Hanifatul R
  id: 55380f95-15b2-11ec-abd3-aff8e230696b
  last_name: Budiman
- first_name: Lukasz M
  full_name: Kowalski, Lukasz M
  id: e3a512e2-4bbe-11eb-a68a-e3857a7844c2
  last_name: Kowalski
- first_name: Ivana
  full_name: Matijevic, Ivana
  id: 83c17ce3-15b2-11ec-abd3-f486545870bd
  last_name: Matijevic
citation:
  ama: Loose M, Auer A, Brognara G, Budiman HR, Kowalski LM, Matijevic I. In vitro
    reconstitution of small GTPase regulation. <i>FEBS Letters</i>. 2023;597(6):762-777.
    doi:<a href="https://doi.org/10.1002/1873-3468.14540">10.1002/1873-3468.14540</a>
  apa: Loose, M., Auer, A., Brognara, G., Budiman, H. R., Kowalski, L. M., &#38; Matijevic,
    I. (2023). In vitro reconstitution of small GTPase regulation. <i>FEBS Letters</i>.
    Wiley. <a href="https://doi.org/10.1002/1873-3468.14540">https://doi.org/10.1002/1873-3468.14540</a>
  chicago: Loose, Martin, Albert Auer, Gabriel Brognara, Hanifatul R Budiman, Lukasz
    M Kowalski, and Ivana Matijevic. “In Vitro Reconstitution of Small GTPase Regulation.”
    <i>FEBS Letters</i>. Wiley, 2023. <a href="https://doi.org/10.1002/1873-3468.14540">https://doi.org/10.1002/1873-3468.14540</a>.
  ieee: M. Loose, A. Auer, G. Brognara, H. R. Budiman, L. M. Kowalski, and I. Matijevic,
    “In vitro reconstitution of small GTPase regulation,” <i>FEBS Letters</i>, vol.
    597, no. 6. Wiley, pp. 762–777, 2023.
  ista: Loose M, Auer A, Brognara G, Budiman HR, Kowalski LM, Matijevic I. 2023. In
    vitro reconstitution of small GTPase regulation. FEBS Letters. 597(6), 762–777.
  mla: Loose, Martin, et al. “In Vitro Reconstitution of Small GTPase Regulation.”
    <i>FEBS Letters</i>, vol. 597, no. 6, Wiley, 2023, pp. 762–77, doi:<a href="https://doi.org/10.1002/1873-3468.14540">10.1002/1873-3468.14540</a>.
  short: M. Loose, A. Auer, G. Brognara, H.R. Budiman, L.M. Kowalski, I. Matijevic,
    FEBS Letters 597 (2023) 762–777.
corr_author: '1'
date_created: 2023-01-12T12:09:58Z
date_published: 2023-03-01T00:00:00Z
date_updated: 2024-10-09T21:03:42Z
day: '01'
ddc:
- '570'
department:
- _id: MaLo
doi: 10.1002/1873-3468.14540
external_id:
  isi:
  - '000891573000001'
  pmid:
  - '36448231'
file:
- access_level: open_access
  checksum: 7492244d3f9c5faa1347ef03f6e5bc84
  content_type: application/pdf
  creator: dernst
  date_created: 2023-08-16T08:31:04Z
  date_updated: 2023-08-16T08:31:04Z
  file_id: '14063'
  file_name: 2023_FEBSLetters_Loose.pdf
  file_size: 3148143
  relation: main_file
  success: 1
file_date_updated: 2023-08-16T08:31:04Z
has_accepted_license: '1'
intvolume: '       597'
isi: 1
issue: '6'
keyword:
- Cell Biology
- Genetics
- Molecular Biology
- Biochemistry
- Structural Biology
- Biophysics
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 762-777
pmid: 1
publication: FEBS Letters
publication_identifier:
  eissn:
  - 1873-3468
  issn:
  - 0014-5793
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: In vitro reconstitution of small GTPase regulation
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 597
year: '2023'
...
---
_id: '12164'
abstract:
- lang: eng
  text: 'A shared-memory counter is a widely-used and well-studied concurrent object.
    It supports two operations: An Inc operation that increases its value by 1 and
    a Read operation that returns its current value. In Jayanti et al (SIAM J Comput,
    30(2), 2000), Jayanti, Tan and Toueg proved a linear lower bound on the worst-case
    step complexity of obstruction-free implementations, from read-write registers,
    of a large class of shared objects that includes counters. The lower bound leaves
    open the question of finding counter implementations with sub-linear amortized
    step complexity. In this work, we address this gap. We show that n-process, wait-free
    and linearizable counters can be implemented from read-write registers with O(log2n)
    amortized step complexity. This is the first counter algorithm from read-write
    registers that provides sub-linear amortized step complexity in executions of
    arbitrary length. Since a logarithmic lower bound on the amortized step complexity
    of obstruction-free counter implementations exists, our upper bound is within
    a logarithmic factor of the optimal. The worst-case step complexity of the construction
    remains linear, which is optimal. This is obtained thanks to a new max register
    construction with O(logn) amortized step complexity in executions of arbitrary
    length in which the value stored in the register does not grow too quickly. We
    then leverage an existing counter algorithm by Aspnes, Attiya and Censor-Hillel
    [1] in which we “plug” our max register implementation to show that it remains
    linearizable while achieving O(log2n) amortized step complexity.'
acknowledgement: A preliminary version of this work appeared in DISC’19. Mirza Ahad
  Baig, Alessia Milani and Corentin Travers are supported by ANR projects Descartes
  and FREDDA. Mirza Ahad Baig is supported by UMI Relax. Danny Hendler is supported
  by the Israel Science Foundation (Grants 380/18 and 1425/22).
article_processing_charge: No
article_type: original
author:
- first_name: Mirza Ahad
  full_name: Baig, Mirza Ahad
  id: 3EDE6DE4-AA5A-11E9-986D-341CE6697425
  last_name: Baig
- first_name: Danny
  full_name: Hendler, Danny
  last_name: Hendler
- first_name: Alessia
  full_name: Milani, Alessia
  last_name: Milani
- first_name: Corentin
  full_name: Travers, Corentin
  last_name: Travers
citation:
  ama: Baig MA, Hendler D, Milani A, Travers C. Long-lived counters with polylogarithmic
    amortized step complexity. <i>Distributed Computing</i>. 2023;36:29-43. doi:<a
    href="https://doi.org/10.1007/s00446-022-00439-5">10.1007/s00446-022-00439-5</a>
  apa: Baig, M. A., Hendler, D., Milani, A., &#38; Travers, C. (2023). Long-lived
    counters with polylogarithmic amortized step complexity. <i>Distributed Computing</i>.
    Springer Nature. <a href="https://doi.org/10.1007/s00446-022-00439-5">https://doi.org/10.1007/s00446-022-00439-5</a>
  chicago: Baig, Mirza Ahad, Danny Hendler, Alessia Milani, and Corentin Travers.
    “Long-Lived Counters with Polylogarithmic Amortized Step Complexity.” <i>Distributed
    Computing</i>. Springer Nature, 2023. <a href="https://doi.org/10.1007/s00446-022-00439-5">https://doi.org/10.1007/s00446-022-00439-5</a>.
  ieee: M. A. Baig, D. Hendler, A. Milani, and C. Travers, “Long-lived counters with
    polylogarithmic amortized step complexity,” <i>Distributed Computing</i>, vol.
    36. Springer Nature, pp. 29–43, 2023.
  ista: Baig MA, Hendler D, Milani A, Travers C. 2023. Long-lived counters with polylogarithmic
    amortized step complexity. Distributed Computing. 36, 29–43.
  mla: Baig, Mirza Ahad, et al. “Long-Lived Counters with Polylogarithmic Amortized
    Step Complexity.” <i>Distributed Computing</i>, vol. 36, Springer Nature, 2023,
    pp. 29–43, doi:<a href="https://doi.org/10.1007/s00446-022-00439-5">10.1007/s00446-022-00439-5</a>.
  short: M.A. Baig, D. Hendler, A. Milani, C. Travers, Distributed Computing 36 (2023)
    29–43.
date_created: 2023-01-12T12:10:08Z
date_published: 2023-03-01T00:00:00Z
date_updated: 2023-08-16T08:39:36Z
day: '01'
department:
- _id: KrPi
doi: 10.1007/s00446-022-00439-5
external_id:
  isi:
  - '000890138700001'
intvolume: '        36'
isi: 1
keyword:
- Computational Theory and Mathematics
- Computer Networks and Communications
- Hardware and Architecture
- Theoretical Computer Science
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://drops.dagstuhl.de/opus/volltexte/2019/11310/
month: '03'
oa: 1
oa_version: Preprint
page: 29-43
publication: Distributed Computing
publication_identifier:
  eissn:
  - 1432-0452
  issn:
  - 0178-2770
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Long-lived counters with polylogarithmic amortized step complexity
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 36
year: '2023'
...
---
_id: '12165'
abstract:
- lang: eng
  text: It may come as a surprise that a phenomenon as ubiquitous and prominent as
    the transition from laminar to turbulent flow has resisted combined efforts by
    physicists, engineers and mathematicians, and remained unresolved for almost one
    and a half centuries. In recent years, various studies have proposed analogies
    to directed percolation, a well-known universality class in statistical mechanics,
    which describes a non-equilibrium phase transition from a fluctuating active phase
    into an absorbing state. It is this unlikely relation between the multiscale,
    high-dimensional dynamics that signify the transition process in virtually all
    flows of practical relevance, and the arguably most basic non-equilibrium phase
    transition, that so far has mainly been the subject of model studies, which I
    review in this Perspective.
article_processing_charge: No
article_type: original
author:
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
citation:
  ama: Hof B. Directed percolation and the transition to turbulence. <i>Nature Reviews
    Physics</i>. 2023;5:62-72. doi:<a href="https://doi.org/10.1038/s42254-022-00539-y">10.1038/s42254-022-00539-y</a>
  apa: Hof, B. (2023). Directed percolation and the transition to turbulence. <i>Nature
    Reviews Physics</i>. Springer Nature. <a href="https://doi.org/10.1038/s42254-022-00539-y">https://doi.org/10.1038/s42254-022-00539-y</a>
  chicago: Hof, Björn. “Directed Percolation and the Transition to Turbulence.” <i>Nature
    Reviews Physics</i>. Springer Nature, 2023. <a href="https://doi.org/10.1038/s42254-022-00539-y">https://doi.org/10.1038/s42254-022-00539-y</a>.
  ieee: B. Hof, “Directed percolation and the transition to turbulence,” <i>Nature
    Reviews Physics</i>, vol. 5. Springer Nature, pp. 62–72, 2023.
  ista: Hof B. 2023. Directed percolation and the transition to turbulence. Nature
    Reviews Physics. 5, 62–72.
  mla: Hof, Björn. “Directed Percolation and the Transition to Turbulence.” <i>Nature
    Reviews Physics</i>, vol. 5, Springer Nature, 2023, pp. 62–72, doi:<a href="https://doi.org/10.1038/s42254-022-00539-y">10.1038/s42254-022-00539-y</a>.
  short: B. Hof, Nature Reviews Physics 5 (2023) 62–72.
corr_author: '1'
date_created: 2023-01-12T12:10:18Z
date_published: 2023-01-01T00:00:00Z
date_updated: 2024-10-09T21:04:02Z
day: '01'
department:
- _id: BjHo
doi: 10.1038/s42254-022-00539-y
external_id:
  isi:
  - '000890148700002'
intvolume: '         5'
isi: 1
keyword:
- General Physics and Astronomy
language:
- iso: eng
month: '01'
oa_version: None
page: 62-72
publication: Nature Reviews Physics
publication_identifier:
  eissn:
  - 2522-5820
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Directed percolation and the transition to turbulence
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 5
year: '2023'
...
---
OA_type: free access
_id: '12166'
abstract:
- lang: eng
  text: Kerstin Johannesson is a marine ecologist and evolutionary biologist based
    at the Tjärnö Marine Laboratory of the University of Gothenburg, which is situated
    in the beautiful Kosterhavet National Park on the Swedish west coast. Her work,
    using marine periwinkles (especially Littorina saxatilis and L. fabalis) as main
    model systems, has made a remarkable contribution to marine evolutionary biology
    and our understanding of local adaptation and its genetic underpinnings.
article_processing_charge: No
article_type: editorial
author:
- first_name: Anja M
  full_name: Westram, Anja M
  id: 3C147470-F248-11E8-B48F-1D18A9856A87
  last_name: Westram
  orcid: 0000-0003-1050-4969
- first_name: Roger
  full_name: Butlin, Roger
  last_name: Butlin
citation:
  ama: Westram AM, Butlin R. Professor Kerstin Johannesson–winner of the 2022 Molecular
    Ecology Prize. <i>Molecular Ecology</i>. 2023;32(1):26-29. doi:<a href="https://doi.org/10.1111/mec.16779">10.1111/mec.16779</a>
  apa: Westram, A. M., &#38; Butlin, R. (2023). Professor Kerstin Johannesson–winner
    of the 2022 Molecular Ecology Prize. <i>Molecular Ecology</i>. Wiley. <a href="https://doi.org/10.1111/mec.16779">https://doi.org/10.1111/mec.16779</a>
  chicago: Westram, Anja M, and Roger Butlin. “Professor Kerstin Johannesson–Winner
    of the 2022 Molecular Ecology Prize.” <i>Molecular Ecology</i>. Wiley, 2023. <a
    href="https://doi.org/10.1111/mec.16779">https://doi.org/10.1111/mec.16779</a>.
  ieee: A. M. Westram and R. Butlin, “Professor Kerstin Johannesson–winner of the
    2022 Molecular Ecology Prize,” <i>Molecular Ecology</i>, vol. 32, no. 1. Wiley,
    pp. 26–29, 2023.
  ista: Westram AM, Butlin R. 2023. Professor Kerstin Johannesson–winner of the 2022
    Molecular Ecology Prize. Molecular Ecology. 32(1), 26–29.
  mla: Westram, Anja M., and Roger Butlin. “Professor Kerstin Johannesson–Winner of
    the 2022 Molecular Ecology Prize.” <i>Molecular Ecology</i>, vol. 32, no. 1, Wiley,
    2023, pp. 26–29, doi:<a href="https://doi.org/10.1111/mec.16779">10.1111/mec.16779</a>.
  short: A.M. Westram, R. Butlin, Molecular Ecology 32 (2023) 26–29.
corr_author: '1'
date_created: 2023-01-12T12:10:28Z
date_published: 2023-01-01T00:00:00Z
date_updated: 2026-06-18T17:24:18Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1111/mec.16779
external_id:
  isi:
  - '000892168800001'
  pmid:
  - '36443277'
intvolume: '        32'
isi: 1
issue: '1'
keyword:
- Genetics
- Ecology
- Evolution
- Behavior and Systematics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1111/mec.16779
month: '01'
oa: 1
oa_version: Published Version
page: 26-29
pmid: 1
publication: Molecular Ecology
publication_identifier:
  eissn:
  - 1365-294X
  issn:
  - 0962-1083
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Professor Kerstin Johannesson–winner of the 2022 Molecular Ecology Prize
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 32
year: '2023'
...
---
_id: '12172'
abstract:
- lang: eng
  text: In industrial reactors and equipment, non-ideality is quite a common phenomenon
    rather than an exception. These deviations from ideality impact the process's
    overall efficiency and the effectiveness of the equipment. To recognize the associated
    non-ideality, one needs to have enough understanding of the formulation of the
    equations and in-depth knowledge of the residence time distribution (RTD) data
    of real reactors. In the current work, step input and pulse input were used to
    create RTD data for Cascade continuous stirred tank reactors (CSTRs). For the
    aforementioned configuration, experiments were run at various flow rates to validate
    the developed characteristic equations. To produce RTD data, distilled water was
    utilized as the flowing fluid, and NaOH was the tracer substance. The ideal behavior
    of tracer concentration exits age distribution, and cumulative fraction for each
    setup and each input was plotted and experimental results were compared with perfect
    behavior. Deviation of concentration exit age distribution and cumulative fractional
    distribution from ideal behavior is more in pulse input as compared to a step
    input. For ideal cases, the exit age distribution curve and cumulative fraction
    curves are independent of the type of input. But a significant difference was
    observed for the two cases, which may be due to non-measurable fluctuations in
    volumetric flow rate, non-achievement of instant injection of tracer in case of
    pulse input, and slight variations in the sampling period. Further, with increasing
    flow rate, concentration, exit age, and cumulative fractional curves shifted upward,
    and this behavior matches with the actual case.
article_processing_charge: No
article_type: original
author:
- first_name: Bushra
  full_name: Khatoon, Bushra
  last_name: Khatoon
- first_name: Shoaib
  full_name: Kamil, Shoaib
  id: 185a19af-dc7d-11ea-9b2f-8eb2201959e9
  last_name: Kamil
- first_name: Hitesh
  full_name: Babu, Hitesh
  last_name: Babu
- first_name: M.
  full_name: Siraj Alam, M.
  last_name: Siraj Alam
citation:
  ama: 'Khatoon B, Kamil S, Babu H, Siraj Alam M. Experimental analysis of Cascade
    CSTRs with step and pulse inputs. <i>Materials Today: Proceedings</i>. 2023;78(Part
    1):40-47. doi:<a href="https://doi.org/10.1016/j.matpr.2022.11.037">10.1016/j.matpr.2022.11.037</a>'
  apa: 'Khatoon, B., Kamil, S., Babu, H., &#38; Siraj Alam, M. (2023). Experimental
    analysis of Cascade CSTRs with step and pulse inputs. <i>Materials Today: Proceedings</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.matpr.2022.11.037">https://doi.org/10.1016/j.matpr.2022.11.037</a>'
  chicago: 'Khatoon, Bushra, Shoaib Kamil, Hitesh Babu, and M. Siraj Alam. “Experimental
    Analysis of Cascade CSTRs with Step and Pulse Inputs.” <i>Materials Today: Proceedings</i>.
    Elsevier, 2023. <a href="https://doi.org/10.1016/j.matpr.2022.11.037">https://doi.org/10.1016/j.matpr.2022.11.037</a>.'
  ieee: 'B. Khatoon, S. Kamil, H. Babu, and M. Siraj Alam, “Experimental analysis
    of Cascade CSTRs with step and pulse inputs,” <i>Materials Today: Proceedings</i>,
    vol. 78, no. Part 1. Elsevier, pp. 40–47, 2023.'
  ista: 'Khatoon B, Kamil S, Babu H, Siraj Alam M. 2023. Experimental analysis of
    Cascade CSTRs with step and pulse inputs. Materials Today: Proceedings. 78(Part
    1), 40–47.'
  mla: 'Khatoon, Bushra, et al. “Experimental Analysis of Cascade CSTRs with Step
    and Pulse Inputs.” <i>Materials Today: Proceedings</i>, vol. 78, no. Part 1, Elsevier,
    2023, pp. 40–47, doi:<a href="https://doi.org/10.1016/j.matpr.2022.11.037">10.1016/j.matpr.2022.11.037</a>.'
  short: 'B. Khatoon, S. Kamil, H. Babu, M. Siraj Alam, Materials Today: Proceedings
    78 (2023) 40–47.'
date_created: 2023-01-12T12:11:26Z
date_published: 2023-03-20T00:00:00Z
date_updated: 2023-08-16T09:08:11Z
day: '20'
department:
- _id: BjHo
doi: 10.1016/j.matpr.2022.11.037
intvolume: '        78'
issue: Part 1
keyword:
- General Medicine
language:
- iso: eng
month: '03'
oa_version: None
page: 40-47
publication: 'Materials Today: Proceedings'
publication_identifier:
  issn:
  - 2214-7853
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Experimental analysis of Cascade CSTRs with step and pulse inputs
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 78
year: '2023'
...
---
_id: '12183'
abstract:
- lang: eng
  text: We consider a gas of n bosonic particles confined in a box [−ℓ/2,ℓ/2]3 with
    Neumann boundary conditions. We prove Bose–Einstein condensation in the Gross–Pitaevskii
    regime, with an optimal bound on the condensate depletion. Moreover, our lower
    bound for the ground state energy in a small box [−ℓ/2,ℓ/2]3 implies (via Neumann
    bracketing) a lower bound for the ground state energy of N bosons in a large box
    [−L/2,L/2]3 with density ρ=N/L3 in the thermodynamic limit.
acknowledgement: Funding from the European Union’s Horizon 2020 research and innovation
  programme under the ERC grant agreement No 694227 is gratefully acknowledged.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Chiara
  full_name: Boccato, Chiara
  id: 342E7E22-F248-11E8-B48F-1D18A9856A87
  last_name: Boccato
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: Boccato C, Seiringer R. The Bose Gas in a box with Neumann boundary conditions.
    <i>Annales Henri Poincare</i>. 2023;24:1505-1560. doi:<a href="https://doi.org/10.1007/s00023-022-01252-3">10.1007/s00023-022-01252-3</a>
  apa: Boccato, C., &#38; Seiringer, R. (2023). The Bose Gas in a box with Neumann
    boundary conditions. <i>Annales Henri Poincare</i>. Springer Nature. <a href="https://doi.org/10.1007/s00023-022-01252-3">https://doi.org/10.1007/s00023-022-01252-3</a>
  chicago: Boccato, Chiara, and Robert Seiringer. “The Bose Gas in a Box with Neumann
    Boundary Conditions.” <i>Annales Henri Poincare</i>. Springer Nature, 2023. <a
    href="https://doi.org/10.1007/s00023-022-01252-3">https://doi.org/10.1007/s00023-022-01252-3</a>.
  ieee: C. Boccato and R. Seiringer, “The Bose Gas in a box with Neumann boundary
    conditions,” <i>Annales Henri Poincare</i>, vol. 24. Springer Nature, pp. 1505–1560,
    2023.
  ista: Boccato C, Seiringer R. 2023. The Bose Gas in a box with Neumann boundary
    conditions. Annales Henri Poincare. 24, 1505–1560.
  mla: Boccato, Chiara, and Robert Seiringer. “The Bose Gas in a Box with Neumann
    Boundary Conditions.” <i>Annales Henri Poincare</i>, vol. 24, Springer Nature,
    2023, pp. 1505–60, doi:<a href="https://doi.org/10.1007/s00023-022-01252-3">10.1007/s00023-022-01252-3</a>.
  short: C. Boccato, R. Seiringer, Annales Henri Poincare 24 (2023) 1505–1560.
corr_author: '1'
date_created: 2023-01-15T23:00:52Z
date_published: 2023-05-01T00:00:00Z
date_updated: 2025-04-14T07:26:59Z
day: '01'
department:
- _id: RoSe
doi: 10.1007/s00023-022-01252-3
ec_funded: 1
external_id:
  arxiv:
  - '2205.15284'
  isi:
  - '000910751800002'
intvolume: '        24'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2205.15284
month: '05'
oa: 1
oa_version: Preprint
page: 1505-1560
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
publication: Annales Henri Poincare
publication_identifier:
  issn:
  - 1424-0637
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: The Bose Gas in a box with Neumann boundary conditions
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 24
year: '2023'
...
---
_id: '12205'
abstract:
- lang: eng
  text: "Background: This study seeks to evaluate the impact of breast cancer (BRCA)
    gene status on tumor dissemination pattern, surgical outcome and survival in a
    multicenter cohort of paired primary ovarian cancer (pOC) and recurrent ovarian
    cancer (rOC).\r\n\r\nPatients and Methods: Medical records and follow-up data
    from 190 patients were gathered retrospectively. All patients had surgery at pOC
    and at least one further rOC surgery at four European high-volume centers. Patients
    were divided into one cohort with confirmed mutation for BRCA1 and/or BRCA2 (BRCAmut)
    and a second cohort with BRCA wild type or unknown (BRCAwt). Patterns of tumor
    presentation, surgical outcome and survival data were analyzed between the two
    groups.\r\n\r\nResults: Patients with BRCAmut disease were on average 4 years
    younger and had significantly more tumor involvement upon diagnosis. Patients
    with BRCAmut disease showed higher debulking rates at all stages. Multivariate
    analysis showed that only patient age had significant predictive value for complete
    tumor resection in pOC. At rOC, however, only BRCAmut status significantly correlated
    with optimal debulking. Patients with BRCAmut disease showed significantly prolonged
    overall survival (OS) by 24.3 months. Progression-free survival (PFS) was prolonged
    in the BRCAmut group at all stages as well, reaching statistical significance
    during recurrence.\r\n\r\nConclusions: Patients with BRCAmut disease showed a
    more aggressive course of disease with earlier onset and more extensive tumor
    dissemination at pOC. However, surgical outcome and OS were significantly better
    in patients with BRCAmut disease compared with patients with BRCAwt disease. We
    therefore propose to consider BRCAmut status in regard to patient selection for
    cytoreductive surgery, especially in rOC."
acknowledgement: "E.I.B. is a Feodor Lynen fellow of the Humboldt Foundation and a
  participant of the Charité Clinical Scientist Program funded by the Charité Universitätsmedizin
  Berlin and the Berlin Institute of Health. This work was supported by European Commission’s
  Seventh Framework Programme under grant agreement no. 279113 (OCTIPS; www.octips.eu).\r\nOpen
  Access funding enabled and organized by Projekt DEAL."
article_processing_charge: No
article_type: original
author:
- first_name: Jacek
  full_name: Glajzer, Jacek
  last_name: Glajzer
- first_name: Dan Cacsire
  full_name: Castillo-Tong, Dan Cacsire
  last_name: Castillo-Tong
- first_name: Rolf
  full_name: Richter, Rolf
  last_name: Richter
- first_name: Ignace
  full_name: Vergote, Ignace
  last_name: Vergote
- first_name: Hagen
  full_name: Kulbe, Hagen
  last_name: Kulbe
- first_name: Adriaan
  full_name: Vanderstichele, Adriaan
  last_name: Vanderstichele
- first_name: Ilary
  full_name: Ruscito, Ilary
  last_name: Ruscito
- first_name: Fabian
  full_name: Trillsch, Fabian
  last_name: Trillsch
- first_name: Alexander
  full_name: Mustea, Alexander
  last_name: Mustea
- first_name: Caroline
  full_name: Kreuzinger, Caroline
  id: 382077BA-F248-11E8-B48F-1D18A9856A87
  last_name: Kreuzinger
- first_name: Charlie
  full_name: Gourley, Charlie
  last_name: Gourley
- first_name: Hani
  full_name: Gabra, Hani
  last_name: Gabra
- first_name: Eliane T.
  full_name: Taube, Eliane T.
  last_name: Taube
- first_name: Oliver
  full_name: Dorigo, Oliver
  last_name: Dorigo
- first_name: David
  full_name: Horst, David
  last_name: Horst
- first_name: Carlotta
  full_name: Keunecke, Carlotta
  last_name: Keunecke
- first_name: Joanna
  full_name: Baum, Joanna
  last_name: Baum
- first_name: Timothy
  full_name: Angelotti, Timothy
  last_name: Angelotti
- first_name: Jalid
  full_name: Sehouli, Jalid
  last_name: Sehouli
- first_name: Elena Ioana
  full_name: Braicu, Elena Ioana
  last_name: Braicu
citation:
  ama: 'Glajzer J, Castillo-Tong DC, Richter R, et al. Impact of BRCA mutation status
    on tumor dissemination pattern, surgical outcome and patient survival in primary
    and recurrent high-grade serous ovarian cancer: A multicenter retrospective study
    by the Ovarian Cancer Therapy-Innovative Models Prolong Survival (OCTIPS) consortium.
    <i>Annals of Surgical Oncology</i>. 2023;30:35-45. doi:<a href="https://doi.org/10.1245/s10434-022-12459-3">10.1245/s10434-022-12459-3</a>'
  apa: 'Glajzer, J., Castillo-Tong, D. C., Richter, R., Vergote, I., Kulbe, H., Vanderstichele,
    A., … Braicu, E. I. (2023). Impact of BRCA mutation status on tumor dissemination
    pattern, surgical outcome and patient survival in primary and recurrent high-grade
    serous ovarian cancer: A multicenter retrospective study by the Ovarian Cancer
    Therapy-Innovative Models Prolong Survival (OCTIPS) consortium. <i>Annals of Surgical
    Oncology</i>. Springer Nature. <a href="https://doi.org/10.1245/s10434-022-12459-3">https://doi.org/10.1245/s10434-022-12459-3</a>'
  chicago: 'Glajzer, Jacek, Dan Cacsire Castillo-Tong, Rolf Richter, Ignace Vergote,
    Hagen Kulbe, Adriaan Vanderstichele, Ilary Ruscito, et al. “Impact of BRCA Mutation
    Status on Tumor Dissemination Pattern, Surgical Outcome and Patient Survival in
    Primary and Recurrent High-Grade Serous Ovarian Cancer: A Multicenter Retrospective
    Study by the Ovarian Cancer Therapy-Innovative Models Prolong Survival (OCTIPS) Consortium.”
    <i>Annals of Surgical Oncology</i>. Springer Nature, 2023. <a href="https://doi.org/10.1245/s10434-022-12459-3">https://doi.org/10.1245/s10434-022-12459-3</a>.'
  ieee: 'J. Glajzer <i>et al.</i>, “Impact of BRCA mutation status on tumor dissemination
    pattern, surgical outcome and patient survival in primary and recurrent high-grade
    serous ovarian cancer: A multicenter retrospective study by the Ovarian Cancer
    Therapy-Innovative Models Prolong Survival (OCTIPS) consortium,” <i>Annals of
    Surgical Oncology</i>, vol. 30. Springer Nature, pp. 35–45, 2023.'
  ista: 'Glajzer J, Castillo-Tong DC, Richter R, Vergote I, Kulbe H, Vanderstichele
    A, Ruscito I, Trillsch F, Mustea A, Kreuzinger C, Gourley C, Gabra H, Taube ET,
    Dorigo O, Horst D, Keunecke C, Baum J, Angelotti T, Sehouli J, Braicu EI. 2023.
    Impact of BRCA mutation status on tumor dissemination pattern, surgical outcome
    and patient survival in primary and recurrent high-grade serous ovarian cancer:
    A multicenter retrospective study by the Ovarian Cancer Therapy-Innovative Models
    Prolong Survival (OCTIPS) consortium. Annals of Surgical Oncology. 30, 35–45.'
  mla: 'Glajzer, Jacek, et al. “Impact of BRCA Mutation Status on Tumor Dissemination
    Pattern, Surgical Outcome and Patient Survival in Primary and Recurrent High-Grade
    Serous Ovarian Cancer: A Multicenter Retrospective Study by the Ovarian Cancer
    Therapy-Innovative Models Prolong Survival (OCTIPS) Consortium.” <i>Annals of
    Surgical Oncology</i>, vol. 30, Springer Nature, 2023, pp. 35–45, doi:<a href="https://doi.org/10.1245/s10434-022-12459-3">10.1245/s10434-022-12459-3</a>.'
  short: J. Glajzer, D.C. Castillo-Tong, R. Richter, I. Vergote, H. Kulbe, A. Vanderstichele,
    I. Ruscito, F. Trillsch, A. Mustea, C. Kreuzinger, C. Gourley, H. Gabra, E.T.
    Taube, O. Dorigo, D. Horst, C. Keunecke, J. Baum, T. Angelotti, J. Sehouli, E.I.
    Braicu, Annals of Surgical Oncology 30 (2023) 35–45.
date_created: 2023-01-16T09:44:36Z
date_published: 2023-01-01T00:00:00Z
date_updated: 2026-06-18T17:21:24Z
day: '01'
ddc:
- '610'
department:
- _id: JoDa
doi: 10.1245/s10434-022-12459-3
external_id:
  isi:
  - '000852125500006'
  pmid:
  - '36085390'
file:
- access_level: open_access
  checksum: 36a1200e1011f4b2155a8041d0308f34
  content_type: application/pdf
  creator: dernst
  date_created: 2023-02-02T13:01:20Z
  date_updated: 2023-02-02T13:01:20Z
  file_id: '12490'
  file_name: 2023_AnnalsSurgicalOncology_Glajzer.pdf
  file_size: 365865
  relation: main_file
  success: 1
file_date_updated: 2023-02-02T13:01:20Z
has_accepted_license: '1'
intvolume: '        30'
isi: 1
keyword:
- Oncology
- Surgery
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 35-45
pmid: 1
publication: Annals of Surgical Oncology
publication_identifier:
  eissn:
  - 1534-4681
  issn:
  - 1068-9265
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  record:
  - id: '12115'
    relation: other
    status: public
scopus_import: '1'
status: public
title: 'Impact of BRCA mutation status on tumor dissemination pattern, surgical outcome
  and patient survival in primary and recurrent high-grade serous ovarian cancer:
  A multicenter retrospective study by the Ovarian Cancer Therapy-Innovative Models
  Prolong Survival (OCTIPS) consortium'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 30
year: '2023'
...
---
_id: '12287'
abstract:
- lang: eng
  text: We present criteria for establishing a triangulation of a manifold. Given
    a manifold M, a simplicial complex A, and a map H from the underlying space of
    A to M, our criteria are presented in local coordinate charts for M, and ensure
    that H is a homeomorphism. These criteria do not require a differentiable structure,
    or even an explicit metric on M. No Delaunay property of A is assumed. The result
    provides a triangulation guarantee for algorithms that construct a simplicial
    complex by working in local coordinate patches. Because the criteria are easily
    verified in such a setting, they are expected to be of general use.
acknowledgement: "This work has been funded by the European Research Council under
  the European Union’s ERC Grant Agreement number 339025 GUDHI (Algorithmic Foundations
  of Geometric Understanding in Higher Dimensions). Arijit Ghosh is supported by Ramanujan
  Fellowship (No. SB/S2/RJN-064/2015). Part of this work was done when Arijit Ghosh
  was a Researcher at Max-Planck-Institute for Informatics, Germany, supported by
  the IndoGerman Max Planck Center for Computer Science (IMPECS). Mathijs Wintraecken
  also received funding from the European Union’s Horizon 2020 research and innovation
  programme under the Marie Skłodowska-Curie grant agreement No. 754411 and the Austrian
  Science Fund (FWF): M-3073. A part of the results described in this paper were presented
  at SoCG 2018 and in [3]. \r\nOpen access funding provided by the Austrian Science
  Fund (FWF)."
article_processing_charge: No
article_type: original
author:
- first_name: Jean-Daniel
  full_name: Boissonnat, Jean-Daniel
  last_name: Boissonnat
- first_name: Ramsay
  full_name: Dyer, Ramsay
  last_name: Dyer
- first_name: Arijit
  full_name: Ghosh, Arijit
  last_name: Ghosh
- first_name: Mathijs
  full_name: Wintraecken, Mathijs
  id: 307CFBC8-F248-11E8-B48F-1D18A9856A87
  last_name: Wintraecken
  orcid: 0000-0002-7472-2220
citation:
  ama: Boissonnat J-D, Dyer R, Ghosh A, Wintraecken M. Local criteria for triangulating
    general manifolds. <i>Discrete &#38; Computational Geometry</i>. 2023;69:156-191.
    doi:<a href="https://doi.org/10.1007/s00454-022-00431-7">10.1007/s00454-022-00431-7</a>
  apa: Boissonnat, J.-D., Dyer, R., Ghosh, A., &#38; Wintraecken, M. (2023). Local
    criteria for triangulating general manifolds. <i>Discrete &#38; Computational
    Geometry</i>. Springer Nature. <a href="https://doi.org/10.1007/s00454-022-00431-7">https://doi.org/10.1007/s00454-022-00431-7</a>
  chicago: Boissonnat, Jean-Daniel, Ramsay Dyer, Arijit Ghosh, and Mathijs Wintraecken.
    “Local Criteria for Triangulating General Manifolds.” <i>Discrete &#38; Computational
    Geometry</i>. Springer Nature, 2023. <a href="https://doi.org/10.1007/s00454-022-00431-7">https://doi.org/10.1007/s00454-022-00431-7</a>.
  ieee: J.-D. Boissonnat, R. Dyer, A. Ghosh, and M. Wintraecken, “Local criteria for
    triangulating general manifolds,” <i>Discrete &#38; Computational Geometry</i>,
    vol. 69. Springer Nature, pp. 156–191, 2023.
  ista: Boissonnat J-D, Dyer R, Ghosh A, Wintraecken M. 2023. Local criteria for triangulating
    general manifolds. Discrete &#38; Computational Geometry. 69, 156–191.
  mla: Boissonnat, Jean-Daniel, et al. “Local Criteria for Triangulating General Manifolds.”
    <i>Discrete &#38; Computational Geometry</i>, vol. 69, Springer Nature, 2023,
    pp. 156–91, doi:<a href="https://doi.org/10.1007/s00454-022-00431-7">10.1007/s00454-022-00431-7</a>.
  short: J.-D. Boissonnat, R. Dyer, A. Ghosh, M. Wintraecken, Discrete &#38; Computational
    Geometry 69 (2023) 156–191.
corr_author: '1'
date_created: 2023-01-16T10:04:06Z
date_published: 2023-01-01T00:00:00Z
date_updated: 2025-04-14T07:44:00Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1007/s00454-022-00431-7
ec_funded: 1
external_id:
  isi:
  - '000862193600001'
file:
- access_level: open_access
  checksum: 46352e0ee71e460848f88685ca852681
  content_type: application/pdf
  creator: dernst
  date_created: 2023-02-02T11:01:10Z
  date_updated: 2023-02-02T11:01:10Z
  file_id: '12488'
  file_name: 2023_DiscreteCompGeometry_Boissonnat.pdf
  file_size: 582850
  relation: main_file
  success: 1
file_date_updated: 2023-02-02T11:01:10Z
has_accepted_license: '1'
intvolume: '        69'
isi: 1
keyword:
- Computational Theory and Mathematics
- Discrete Mathematics and Combinatorics
- Geometry and Topology
- Theoretical Computer Science
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 156-191
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: fc390959-9c52-11eb-aca3-afa58bd282b2
  grant_number: M03073
  name: Learning and triangulating manifolds via collapses
publication: Discrete & Computational Geometry
publication_identifier:
  eissn:
  - 1432-0444
  issn:
  - 0179-5376
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Local criteria for triangulating general manifolds
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 69
year: '2023'
...
---
_id: '12329'
abstract:
- lang: eng
  text: In this article, we develop two independent and new approaches to model epidemic
    spread in a network. Contrary to the most studied models, those developed here
    allow for contacts with different probabilities of transmitting the disease (transmissibilities).
    We then examine each of these models using some mean field type approximations.
    The first model looks at the late-stage effects of an epidemic outbreak and allows
    for the computation of the probability that a given vertex was infected. This
    computation is based on a mean field approximation and only depends on the number
    of contacts and their transmissibilities. This approach shares many similarities
    with percolation models in networks. The second model we develop is a dynamic
    model which we analyze using a mean field approximation which highly reduces the
    dimensionality of the system. In particular, the original system which individually
    analyses each vertex of the network is reduced to one with as many equations as
    different transmissibilities. Perhaps the greatest contribution of this article
    is the observation that, in both these models, the existence and size of an epidemic
    outbreak are linked to the properties of a matrix which we call the R-matrix.
    This is a generalization of the basic reproduction number which more precisely
    characterizes the main routes of infection.
acknowledgement: Gonçalo Oliveira is supported by the NOMIS Foundation, Fundação Serrapilheira
  1812-27395, by CNPq grants 428959/2018-0 and 307475/2018-2, and by FAPERJ through
  the grant Jovem Cientista do Nosso Estado E-26/202.793/2019.
article_number: '468'
article_processing_charge: No
article_type: original
author:
- first_name: Arturo
  full_name: Gómez, Arturo
  last_name: Gómez
- first_name: Goncalo
  full_name: Oliveira, Goncalo
  id: 58abbde8-f455-11eb-a497-98c8fd71b905
  last_name: Oliveira
citation:
  ama: Gómez A, Oliveira G. New approaches to epidemic modeling on networks. <i>Scientific
    Reports</i>. 2023;13. doi:<a href="https://doi.org/10.1038/s41598-022-19827-9">10.1038/s41598-022-19827-9</a>
  apa: Gómez, A., &#38; Oliveira, G. (2023). New approaches to epidemic modeling on
    networks. <i>Scientific Reports</i>. Springer Nature. <a href="https://doi.org/10.1038/s41598-022-19827-9">https://doi.org/10.1038/s41598-022-19827-9</a>
  chicago: Gómez, Arturo, and Goncalo Oliveira. “New Approaches to Epidemic Modeling
    on Networks.” <i>Scientific Reports</i>. Springer Nature, 2023. <a href="https://doi.org/10.1038/s41598-022-19827-9">https://doi.org/10.1038/s41598-022-19827-9</a>.
  ieee: A. Gómez and G. Oliveira, “New approaches to epidemic modeling on networks,”
    <i>Scientific Reports</i>, vol. 13. Springer Nature, 2023.
  ista: Gómez A, Oliveira G. 2023. New approaches to epidemic modeling on networks.
    Scientific Reports. 13, 468.
  mla: Gómez, Arturo, and Goncalo Oliveira. “New Approaches to Epidemic Modeling on
    Networks.” <i>Scientific Reports</i>, vol. 13, 468, Springer Nature, 2023, doi:<a
    href="https://doi.org/10.1038/s41598-022-19827-9">10.1038/s41598-022-19827-9</a>.
  short: A. Gómez, G. Oliveira, Scientific Reports 13 (2023).
corr_author: '1'
date_created: 2023-01-22T23:00:55Z
date_published: 2023-01-10T00:00:00Z
date_updated: 2024-10-09T21:03:29Z
day: '10'
ddc:
- '510'
department:
- _id: TaHa
doi: 10.1038/s41598-022-19827-9
external_id:
  isi:
  - '001003345000051'
file:
- access_level: open_access
  checksum: a8b83739f4a951e83e0b2a778f03b327
  content_type: application/pdf
  creator: dernst
  date_created: 2023-01-23T07:53:23Z
  date_updated: 2023-01-23T07:53:23Z
  file_id: '12336'
  file_name: 2023_ScientificReports_Gomez.pdf
  file_size: 2167792
  relation: main_file
  success: 1
file_date_updated: 2023-01-23T07:53:23Z
has_accepted_license: '1'
intvolume: '        13'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
publication: Scientific Reports
publication_identifier:
  eissn:
  - 2045-2322
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: New approaches to epidemic modeling on networks
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 13
year: '2023'
...
---
_id: '12330'
abstract:
- lang: eng
  text: 'The design and implementation of efficient concurrent data structures has
    seen significant attention. However, most of this work has focused on concurrent
    data structures providing good worst-case guarantees, although, in real workloads,
    objects are often accessed at different rates. Efficient distribution-adaptive
    data structures, such as splay-trees, are known in the sequential case; however,
    they often are hard to translate efficiently to the concurrent case. We investigate
    distribution-adaptive concurrent data structures, and propose a new design called
    the splay-list. At a high level, the splay-list is similar to a standard skip-list,
    with the key distinction that the height of each element adapts dynamically to
    its access rate: popular elements “move up,” whereas rarely-accessed elements
    decrease in height. We show that the splay-list provides order-optimal amortized
    complexity bounds for a subset of operations, while being amenable to efficient
    concurrent implementation. Experiments show that the splay-list can leverage distribution-adaptivity
    for performance, and can outperform the only previously-known distribution-adaptive
    concurrent design in certain workloads.'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Vitalii
  full_name: Aksenov, Vitalii
  id: 2980135A-F248-11E8-B48F-1D18A9856A87
  last_name: Aksenov
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Alexandra
  full_name: Drozdova, Alexandra
  last_name: Drozdova
- first_name: Amirkeivan
  full_name: Mohtashami, Amirkeivan
  last_name: Mohtashami
citation:
  ama: 'Aksenov V, Alistarh D-A, Drozdova A, Mohtashami A. The splay-list: A distribution-adaptive
    concurrent skip-list. <i>Distributed Computing</i>. 2023;36:395-418. doi:<a href="https://doi.org/10.1007/s00446-022-00441-x">10.1007/s00446-022-00441-x</a>'
  apa: 'Aksenov, V., Alistarh, D.-A., Drozdova, A., &#38; Mohtashami, A. (2023). The
    splay-list: A distribution-adaptive concurrent skip-list. <i>Distributed Computing</i>.
    Springer Nature. <a href="https://doi.org/10.1007/s00446-022-00441-x">https://doi.org/10.1007/s00446-022-00441-x</a>'
  chicago: 'Aksenov, Vitalii, Dan-Adrian Alistarh, Alexandra Drozdova, and Amirkeivan
    Mohtashami. “The Splay-List: A Distribution-Adaptive Concurrent Skip-List.” <i>Distributed
    Computing</i>. Springer Nature, 2023. <a href="https://doi.org/10.1007/s00446-022-00441-x">https://doi.org/10.1007/s00446-022-00441-x</a>.'
  ieee: 'V. Aksenov, D.-A. Alistarh, A. Drozdova, and A. Mohtashami, “The splay-list:
    A distribution-adaptive concurrent skip-list,” <i>Distributed Computing</i>, vol.
    36. Springer Nature, pp. 395–418, 2023.'
  ista: 'Aksenov V, Alistarh D-A, Drozdova A, Mohtashami A. 2023. The splay-list:
    A distribution-adaptive concurrent skip-list. Distributed Computing. 36, 395–418.'
  mla: 'Aksenov, Vitalii, et al. “The Splay-List: A Distribution-Adaptive Concurrent
    Skip-List.” <i>Distributed Computing</i>, vol. 36, Springer Nature, 2023, pp.
    395–418, doi:<a href="https://doi.org/10.1007/s00446-022-00441-x">10.1007/s00446-022-00441-x</a>.'
  short: V. Aksenov, D.-A. Alistarh, A. Drozdova, A. Mohtashami, Distributed Computing
    36 (2023) 395–418.
date_created: 2023-01-22T23:00:55Z
date_published: 2023-09-01T00:00:00Z
date_updated: 2023-08-14T12:54:32Z
day: '01'
department:
- _id: DaAl
doi: 10.1007/s00446-022-00441-x
external_id:
  arxiv:
  - '2008.01009'
  isi:
  - '000913424000001'
intvolume: '        36'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2008.01009
month: '09'
oa: 1
oa_version: Preprint
page: 395-418
publication: Distributed Computing
publication_identifier:
  eissn:
  - 1432-0452
  issn:
  - 0178-2770
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The splay-list: A distribution-adaptive concurrent skip-list'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 36
year: '2023'
...
---
_id: '12331'
abstract:
- lang: eng
  text: High carrier mobility is critical to improving thermoelectric performance
    over a broad temperature range. However, traditional doping inevitably deteriorates
    carrier mobility. Herein, we develop a strategy for fine tuning of defects to
    improve carrier mobility. To begin, n-type PbTe is created by compensating for
    the intrinsic Pb vacancy in bare PbTe. Excess Pb2+ reduces vacancy scattering,
    resulting in a high carrier mobility of ∼3400 cm2 V–1 s–1. Then, excess Ag is
    introduced to compensate for the remaining intrinsic Pb vacancies. We find that
    excess Ag exhibits a dynamic doping process with increasing temperatures, increasing
    both the carrier concentration and carrier mobility throughout a wide temperature
    range; specifically, an ultrahigh carrier mobility ∼7300 cm2 V–1 s–1 is obtained
    for Pb1.01Te + 0.002Ag at 300 K. Moreover, the dynamic doping-induced high carrier
    concentration suppresses the bipolar thermal conductivity at high temperatures.
    The final step is using iodine to optimize the carrier concentration to ∼1019
    cm–3. Ultimately, a maximum ZT value of ∼1.5 and a large average ZTave value of
    ∼1.0 at 300–773 K are obtained for Pb1.01Te0.998I0.002 + 0.002Ag. These findings
    demonstrate that fine tuning of defects with <0.5% impurities can remarkably enhance
    carrier mobility and improve thermoelectric performance.
acknowledgement: The National Key Research and Development Program of China (2018YFA0702100),
  the Basic Science Center Project of the National Natural Science Foundation of China
  (51788104), the National Natural Science Foundation of China (51571007 and 51772012),
  the Beijing Natural Science Foundation (JQ18004), the 111 Project (B17002), the
  National Science Fund for Distinguished Young Scholars (51925101), and the FWF “Lise
  Meitner Fellowship” (grant agreement M2889-N). Open Access is funded by the Austrian
  Science Fund (FWF).
article_processing_charge: No
article_type: original
author:
- first_name: Siqi
  full_name: Wang, Siqi
  last_name: Wang
- first_name: Cheng
  full_name: Chang, Cheng
  id: 9E331C2E-9F27-11E9-AE48-5033E6697425
  last_name: Chang
  orcid: 0000-0002-9515-4277
- first_name: Shulin
  full_name: Bai, Shulin
  last_name: Bai
- first_name: Bingchao
  full_name: Qin, Bingchao
  last_name: Qin
- first_name: Yingcai
  full_name: Zhu, Yingcai
  last_name: Zhu
- first_name: Shaoping
  full_name: Zhan, Shaoping
  last_name: Zhan
- first_name: Junqing
  full_name: Zheng, Junqing
  last_name: Zheng
- first_name: Shuwei
  full_name: Tang, Shuwei
  last_name: Tang
- first_name: Li Dong
  full_name: Zhao, Li Dong
  last_name: Zhao
citation:
  ama: Wang S, Chang C, Bai S, et al. Fine tuning of defects enables high carrier
    mobility and enhanced thermoelectric performance of n-type PbTe. <i>Chemistry
    of Materials</i>. 2023;35(2):755-763. doi:<a href="https://doi.org/10.1021/acs.chemmater.2c03542">10.1021/acs.chemmater.2c03542</a>
  apa: Wang, S., Chang, C., Bai, S., Qin, B., Zhu, Y., Zhan, S., … Zhao, L. D. (2023).
    Fine tuning of defects enables high carrier mobility and enhanced thermoelectric
    performance of n-type PbTe. <i>Chemistry of Materials</i>. American Chemical Society.
    <a href="https://doi.org/10.1021/acs.chemmater.2c03542">https://doi.org/10.1021/acs.chemmater.2c03542</a>
  chicago: Wang, Siqi, Cheng Chang, Shulin Bai, Bingchao Qin, Yingcai Zhu, Shaoping
    Zhan, Junqing Zheng, Shuwei Tang, and Li Dong Zhao. “Fine Tuning of Defects Enables
    High Carrier Mobility and Enhanced Thermoelectric Performance of N-Type PbTe.”
    <i>Chemistry of Materials</i>. American Chemical Society, 2023. <a href="https://doi.org/10.1021/acs.chemmater.2c03542">https://doi.org/10.1021/acs.chemmater.2c03542</a>.
  ieee: S. Wang <i>et al.</i>, “Fine tuning of defects enables high carrier mobility
    and enhanced thermoelectric performance of n-type PbTe,” <i>Chemistry of Materials</i>,
    vol. 35, no. 2. American Chemical Society, pp. 755–763, 2023.
  ista: Wang S, Chang C, Bai S, Qin B, Zhu Y, Zhan S, Zheng J, Tang S, Zhao LD. 2023.
    Fine tuning of defects enables high carrier mobility and enhanced thermoelectric
    performance of n-type PbTe. Chemistry of Materials. 35(2), 755–763.
  mla: Wang, Siqi, et al. “Fine Tuning of Defects Enables High Carrier Mobility and
    Enhanced Thermoelectric Performance of N-Type PbTe.” <i>Chemistry of Materials</i>,
    vol. 35, no. 2, American Chemical Society, 2023, pp. 755–63, doi:<a href="https://doi.org/10.1021/acs.chemmater.2c03542">10.1021/acs.chemmater.2c03542</a>.
  short: S. Wang, C. Chang, S. Bai, B. Qin, Y. Zhu, S. Zhan, J. Zheng, S. Tang, L.D.
    Zhao, Chemistry of Materials 35 (2023) 755–763.
corr_author: '1'
date_created: 2023-01-22T23:00:55Z
date_published: 2023-01-24T00:00:00Z
date_updated: 2025-04-23T08:47:37Z
day: '24'
ddc:
- '540'
department:
- _id: MaIb
doi: 10.1021/acs.chemmater.2c03542
external_id:
  isi:
  - '000914749700001'
  pmid:
  - '36711054'
file:
- access_level: open_access
  checksum: b21dca2aa7a80c068bc256bdd1fea9df
  content_type: application/pdf
  creator: dernst
  date_created: 2023-08-14T12:57:25Z
  date_updated: 2023-08-14T12:57:25Z
  file_id: '14055'
  file_name: 2023_ChemistryMaterials_Wang.pdf
  file_size: 2961043
  relation: main_file
  success: 1
file_date_updated: 2023-08-14T12:57:25Z
has_accepted_license: '1'
intvolume: '        35'
isi: 1
issue: '2'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 755-763
pmid: 1
project:
- _id: 9B8804FC-BA93-11EA-9121-9846C619BF3A
  grant_number: M02889
  name: Bottom-up Engineering for Thermoelectric Applications
publication: Chemistry of Materials
publication_identifier:
  eissn:
  - 1520-5002
  issn:
  - 0897-4756
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Fine tuning of defects enables high carrier mobility and enhanced thermoelectric
  performance of n-type PbTe
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 35
year: '2023'
...
---
_id: '12407'
abstract:
- lang: eng
  text: "As the complexity and criticality of software increase every year, so does
    the importance of run-time monitoring. Third-party monitoring, with limited knowledge
    of the monitored software, and best-effort monitoring, which keeps pace with the
    monitored software, are especially valuable, yet underexplored areas of run-time
    monitoring. Most existing monitoring frameworks do not support their combination
    because they either require access to the monitored code for instrumentation purposes
    or the processing of all observed events, or both.\r\n\r\nWe present a middleware
    framework, VAMOS, for the run-time monitoring of software which is explicitly
    designed to support third-party and best-effort scenarios. The design goals of
    VAMOS are (i) efficiency (keeping pace at low overhead), (ii) flexibility (the
    ability to monitor black-box code through a variety of different event channels,
    and the connectability to monitors written in different specification languages),
    and (iii) ease-of-use. To achieve its goals, VAMOS combines aspects of event broker
    and event recognition systems with aspects of stream processing systems.\r\n\r\nWe
    implemented a prototype toolchain for VAMOS and conducted experiments including
    a case study of monitoring for data races. The results indicate that VAMOS enables
    writing useful yet efficient monitors, is compatible with a variety of event sources
    and monitor specifications, and simplifies key aspects of setting up a monitoring
    system from scratch."
acknowledgement: "This work was supported in part by the ERC-2020-AdG 101020093. \r\nThe
  authors would like to thank the anonymous FASE reviewers for their valuable feedback
  and suggestions."
alternative_title:
- IST Austria Technical Report
article_processing_charge: No
author:
- first_name: Marek
  full_name: Chalupa, Marek
  id: 87e34708-d6c6-11ec-9f5b-9391e7be2463
  last_name: Chalupa
- first_name: Fabian
  full_name: Mühlböck, Fabian
  id: 6395C5F6-89DF-11E9-9C97-6BDFE5697425
  last_name: Mühlböck
  orcid: 0000-0003-1548-0177
- first_name: Stefanie
  full_name: Muroya Lei, Stefanie
  id: a376de31-8972-11ed-ae7b-d0251c13c8ff
  last_name: Muroya Lei
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
citation:
  ama: 'Chalupa M, Mühlböck F, Muroya Lei S, Henzinger TA. <i>VAMOS: Middleware for
    Best-Effort Third-Party Monitoring</i>. Institute of Science and Technology Austria;
    2023. doi:<a href="https://doi.org/10.15479/AT:ISTA:12407">10.15479/AT:ISTA:12407</a>'
  apa: 'Chalupa, M., Mühlböck, F., Muroya Lei, S., &#38; Henzinger, T. A. (2023).
    <i>VAMOS: Middleware for Best-Effort Third-Party Monitoring</i>. Institute of
    Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:12407">https://doi.org/10.15479/AT:ISTA:12407</a>'
  chicago: 'Chalupa, Marek, Fabian Mühlböck, Stefanie Muroya Lei, and Thomas A Henzinger.
    <i>VAMOS: Middleware for Best-Effort Third-Party Monitoring</i>. Institute of
    Science and Technology Austria, 2023. <a href="https://doi.org/10.15479/AT:ISTA:12407">https://doi.org/10.15479/AT:ISTA:12407</a>.'
  ieee: 'M. Chalupa, F. Mühlböck, S. Muroya Lei, and T. A. Henzinger, <i>VAMOS: Middleware
    for Best-Effort Third-Party Monitoring</i>. Institute of Science and Technology
    Austria, 2023.'
  ista: 'Chalupa M, Mühlböck F, Muroya Lei S, Henzinger TA. 2023. VAMOS: Middleware
    for Best-Effort Third-Party Monitoring, Institute of Science and Technology Austria,
    38p.'
  mla: 'Chalupa, Marek, et al. <i>VAMOS: Middleware for Best-Effort Third-Party Monitoring</i>.
    Institute of Science and Technology Austria, 2023, doi:<a href="https://doi.org/10.15479/AT:ISTA:12407">10.15479/AT:ISTA:12407</a>.'
  short: 'M. Chalupa, F. Mühlböck, S. Muroya Lei, T.A. Henzinger, VAMOS: Middleware
    for Best-Effort Third-Party Monitoring, Institute of Science and Technology Austria,
    2023.'
corr_author: '1'
date_created: 2023-01-27T03:18:08Z
date_published: 2023-01-27T00:00:00Z
date_updated: 2025-09-09T12:25:29Z
day: '27'
ddc:
- '005'
department:
- _id: ToHe
doi: 10.15479/AT:ISTA:12407
ec_funded: 1
file:
- access_level: open_access
  checksum: 55426e463fdeafe9777fc3ff635154c7
  content_type: application/pdf
  creator: fmuehlbo
  date_created: 2023-01-27T03:18:34Z
  date_updated: 2023-01-27T03:18:34Z
  file_id: '12408'
  file_name: main.pdf
  file_size: 662409
  relation: main_file
  success: 1
file_date_updated: 2023-01-27T03:18:34Z
has_accepted_license: '1'
keyword:
- runtime monitoring
- best effort
- third party
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: '38'
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
publication_identifier:
  eissn:
  - 2664-1690
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '12856'
    relation: later_version
    status: public
status: public
title: 'VAMOS: Middleware for Best-Effort Third-Party Monitoring'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '12428'
abstract:
- lang: eng
  text: The mammary gland consists of a bilayered epithelial structure with an extensively
    branched morphology. The majority of this epithelial tree is laid down during
    puberty, during which actively proliferating terminal end buds repeatedly elongate
    and bifurcate to form the basic structure of the ductal tree. Mammary ducts consist
    of a basal and luminal cell layer with a multitude of identified sub-lineages
    within both layers. The understanding of how these different cell lineages are
    cooperatively driving branching morphogenesis is a problem of crossing multiple
    scales, as this requires information on the macroscopic branched structure of
    the gland, as well as data on single-cell dynamics driving the morphogenic program.
    Here we describe a method to combine genetic lineage tracing with whole-gland
    branching analysis. Quantitative data on the global organ structure can be used
    to derive a model for mammary gland branching morphogenesis and provide a backbone
    on which the dynamics of individual cell lineages can be simulated and compared
    to lineage-tracing approaches. Eventually, these quantitative models and experiments
    allow to understand the couplings between the macroscopic shape of the mammary
    gland and the underlying single-cell dynamics driving branching morphogenesis.
alternative_title:
- Methods in Molecular Biology
article_processing_charge: No
author:
- first_name: Edouard B
  full_name: Hannezo, Edouard B
  id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
  last_name: Hannezo
  orcid: 0000-0001-6005-1561
- first_name: Colinda L.G.J.
  full_name: Scheele, Colinda L.G.J.
  last_name: Scheele
citation:
  ama: 'Hannezo EB, Scheele CLGJ. A Guide Toward Multi-scale and Quantitative Branching
    Analysis in the Mammary Gland. In: Margadant C, ed. <i>Cell Migration in Three
    Dimensions</i>. Vol 2608. MIMB. Springer Nature; 2023:183-205. doi:<a href="https://doi.org/10.1007/978-1-0716-2887-4_12">10.1007/978-1-0716-2887-4_12</a>'
  apa: Hannezo, E. B., &#38; Scheele, C. L. G. J. (2023). A Guide Toward Multi-scale
    and Quantitative Branching Analysis in the Mammary Gland. In C. Margadant (Ed.),
    <i>Cell Migration in Three Dimensions</i> (Vol. 2608, pp. 183–205). Springer Nature.
    <a href="https://doi.org/10.1007/978-1-0716-2887-4_12">https://doi.org/10.1007/978-1-0716-2887-4_12</a>
  chicago: Hannezo, Edouard B, and Colinda L.G.J. Scheele. “A Guide Toward Multi-Scale
    and Quantitative Branching Analysis in the Mammary Gland.” In <i>Cell Migration
    in Three Dimensions</i>, edited by Coert Margadant, 2608:183–205. MIMB. Springer
    Nature, 2023. <a href="https://doi.org/10.1007/978-1-0716-2887-4_12">https://doi.org/10.1007/978-1-0716-2887-4_12</a>.
  ieee: E. B. Hannezo and C. L. G. J. Scheele, “A Guide Toward Multi-scale and Quantitative
    Branching Analysis in the Mammary Gland,” in <i>Cell Migration in Three Dimensions</i>,
    vol. 2608, C. Margadant, Ed. Springer Nature, 2023, pp. 183–205.
  ista: 'Hannezo EB, Scheele CLGJ. 2023.A Guide Toward Multi-scale and Quantitative
    Branching Analysis in the Mammary Gland. In: Cell Migration in Three Dimensions.
    Methods in Molecular Biology, vol. 2608, 183–205.'
  mla: Hannezo, Edouard B., and Colinda L. G. J. Scheele. “A Guide Toward Multi-Scale
    and Quantitative Branching Analysis in the Mammary Gland.” <i>Cell Migration in
    Three Dimensions</i>, edited by Coert Margadant, vol. 2608, Springer Nature, 2023,
    pp. 183–205, doi:<a href="https://doi.org/10.1007/978-1-0716-2887-4_12">10.1007/978-1-0716-2887-4_12</a>.
  short: E.B. Hannezo, C.L.G.J. Scheele, in:, C. Margadant (Ed.), Cell Migration in
    Three Dimensions, Springer Nature, 2023, pp. 183–205.
corr_author: '1'
date_created: 2023-01-29T23:00:58Z
date_published: 2023-01-19T00:00:00Z
date_updated: 2024-10-09T21:04:04Z
day: '19'
ddc:
- '570'
department:
- _id: EdHa
doi: 10.1007/978-1-0716-2887-4_12
editor:
- first_name: Coert
  full_name: Margadant, Coert
  last_name: Margadant
external_id:
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  - '36653709'
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  date_updated: 2023-02-03T10:56:39Z
  file_id: '12500'
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  file_size: 826598
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has_accepted_license: '1'
intvolume: '      2608'
language:
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month: '01'
oa: 1
oa_version: Published Version
page: 183-205
pmid: 1
publication: Cell Migration in Three Dimensions
publication_identifier:
  eisbn:
  - '9781071628874'
  eissn:
  - 1940-6029
  isbn:
  - '9781071628867'
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
series_title: MIMB
status: public
title: A Guide Toward Multi-scale and Quantitative Branching Analysis in the Mammary
  Gland
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2608
year: '2023'
...
---
_id: '12429'
abstract:
- lang: eng
  text: In this paper, we consider traces at initial times for functions with mixed
    time-space smoothness. Such results are often needed in the theory of evolution
    equations. Our result extends and unifies many previous results. Our main improvement
    is that we can allow general interpolation couples. The abstract results are applied
    to regularity problems for fractional evolution equations and stochastic evolution
    equations, where uniform trace estimates on the half-line are shown.
acknowledgement: The first author has been partially supported by the Nachwuchsring—Network
  for the promotion of young scientists—at TU Kaiserslautern. The second and third
  authors were supported by the Vidi subsidy 639.032.427 of the Netherlands Organisation
  for Scientific Research (NWO).
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Antonio
  full_name: Agresti, Antonio
  id: 673cd0cc-9b9a-11eb-b144-88f30e1fbb72
  last_name: Agresti
  orcid: 0000-0002-9573-2962
- first_name: Nick
  full_name: Lindemulder, Nick
  last_name: Lindemulder
- first_name: Mark
  full_name: Veraar, Mark
  last_name: Veraar
citation:
  ama: Agresti A, Lindemulder N, Veraar M. On the trace embedding and its applications
    to evolution equations. <i>Mathematische Nachrichten</i>. 2023;296(4):1319-1350.
    doi:<a href="https://doi.org/10.1002/mana.202100192">10.1002/mana.202100192</a>
  apa: Agresti, A., Lindemulder, N., &#38; Veraar, M. (2023). On the trace embedding
    and its applications to evolution equations. <i>Mathematische Nachrichten</i>.
    Wiley. <a href="https://doi.org/10.1002/mana.202100192">https://doi.org/10.1002/mana.202100192</a>
  chicago: Agresti, Antonio, Nick Lindemulder, and Mark Veraar. “On the Trace Embedding
    and Its Applications to Evolution Equations.” <i>Mathematische Nachrichten</i>.
    Wiley, 2023. <a href="https://doi.org/10.1002/mana.202100192">https://doi.org/10.1002/mana.202100192</a>.
  ieee: A. Agresti, N. Lindemulder, and M. Veraar, “On the trace embedding and its
    applications to evolution equations,” <i>Mathematische Nachrichten</i>, vol. 296,
    no. 4. Wiley, pp. 1319–1350, 2023.
  ista: Agresti A, Lindemulder N, Veraar M. 2023. On the trace embedding and its applications
    to evolution equations. Mathematische Nachrichten. 296(4), 1319–1350.
  mla: Agresti, Antonio, et al. “On the Trace Embedding and Its Applications to Evolution
    Equations.” <i>Mathematische Nachrichten</i>, vol. 296, no. 4, Wiley, 2023, pp.
    1319–50, doi:<a href="https://doi.org/10.1002/mana.202100192">10.1002/mana.202100192</a>.
  short: A. Agresti, N. Lindemulder, M. Veraar, Mathematische Nachrichten 296 (2023)
    1319–1350.
date_created: 2023-01-29T23:00:59Z
date_published: 2023-04-01T00:00:00Z
date_updated: 2023-08-16T11:41:42Z
day: '01'
ddc:
- '510'
department:
- _id: JuFi
doi: 10.1002/mana.202100192
external_id:
  arxiv:
  - '2104.05063'
  isi:
  - '000914134900001'
file:
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  checksum: 6f099f1d064173784d1a27716a2cc795
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  creator: dernst
  date_created: 2023-08-16T11:40:02Z
  date_updated: 2023-08-16T11:40:02Z
  file_id: '14067'
  file_name: 2023_MathNachrichten_Agresti.pdf
  file_size: 449280
  relation: main_file
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file_date_updated: 2023-08-16T11:40:02Z
has_accepted_license: '1'
intvolume: '       296'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 1319-1350
publication: Mathematische Nachrichten
publication_identifier:
  eissn:
  - 1522-2616
  issn:
  - 0025-584X
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: On the trace embedding and its applications to evolution equations
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 296
year: '2023'
...
---
_id: '12430'
abstract:
- lang: eng
  text: We study the time evolution of the Nelson model in a mean-field limit in which
    N nonrelativistic bosons weakly couple (with respect to the particle number) to
    a positive or zero mass quantized scalar field. Our main result is the derivation
    of the Bogoliubov dynamics and higher-order corrections. More precisely, we prove
    the convergence of the approximate wave function to the many-body wave function
    in norm, with a convergence rate proportional to the number of corrections taken
    into account in the approximation. We prove an analogous result for the unitary
    propagator. As an application, we derive a simple system of partial differential
    equations describing the time evolution of the first- and second-order approximations
    to the one-particle reduced density matrices of the particles and the quantum
    field, respectively.
article_number: '2350006'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Marco
  full_name: Falconi, Marco
  last_name: Falconi
- first_name: Nikolai K
  full_name: Leopold, Nikolai K
  id: 4BC40BEC-F248-11E8-B48F-1D18A9856A87
  last_name: Leopold
  orcid: 0000-0002-0495-6822
- first_name: David Johannes
  full_name: Mitrouskas, David Johannes
  id: cbddacee-2b11-11eb-a02e-a2e14d04e52d
  last_name: Mitrouskas
- first_name: Sören P
  full_name: Petrat, Sören P
  id: 40AC02DC-F248-11E8-B48F-1D18A9856A87
  last_name: Petrat
  orcid: 0000-0002-9166-5889
citation:
  ama: Falconi M, Leopold NK, Mitrouskas DJ, Petrat SP. Bogoliubov dynamics and higher-order
    corrections for the regularized Nelson model. <i>Reviews in Mathematical Physics</i>.
    2023;35(4). doi:<a href="https://doi.org/10.1142/S0129055X2350006X">10.1142/S0129055X2350006X</a>
  apa: Falconi, M., Leopold, N. K., Mitrouskas, D. J., &#38; Petrat, S. P. (2023).
    Bogoliubov dynamics and higher-order corrections for the regularized Nelson model.
    <i>Reviews in Mathematical Physics</i>. World Scientific Publishing. <a href="https://doi.org/10.1142/S0129055X2350006X">https://doi.org/10.1142/S0129055X2350006X</a>
  chicago: Falconi, Marco, Nikolai K Leopold, David Johannes Mitrouskas, and Sören
    P Petrat. “Bogoliubov Dynamics and Higher-Order Corrections for the Regularized
    Nelson Model.” <i>Reviews in Mathematical Physics</i>. World Scientific Publishing,
    2023. <a href="https://doi.org/10.1142/S0129055X2350006X">https://doi.org/10.1142/S0129055X2350006X</a>.
  ieee: M. Falconi, N. K. Leopold, D. J. Mitrouskas, and S. P. Petrat, “Bogoliubov
    dynamics and higher-order corrections for the regularized Nelson model,” <i>Reviews
    in Mathematical Physics</i>, vol. 35, no. 4. World Scientific Publishing, 2023.
  ista: Falconi M, Leopold NK, Mitrouskas DJ, Petrat SP. 2023. Bogoliubov dynamics
    and higher-order corrections for the regularized Nelson model. Reviews in Mathematical
    Physics. 35(4), 2350006.
  mla: Falconi, Marco, et al. “Bogoliubov Dynamics and Higher-Order Corrections for
    the Regularized Nelson Model.” <i>Reviews in Mathematical Physics</i>, vol. 35,
    no. 4, 2350006, World Scientific Publishing, 2023, doi:<a href="https://doi.org/10.1142/S0129055X2350006X">10.1142/S0129055X2350006X</a>.
  short: M. Falconi, N.K. Leopold, D.J. Mitrouskas, S.P. Petrat, Reviews in Mathematical
    Physics 35 (2023).
date_created: 2023-01-29T23:00:59Z
date_published: 2023-01-09T00:00:00Z
date_updated: 2023-08-16T11:47:27Z
day: '09'
department:
- _id: RoSe
doi: 10.1142/S0129055X2350006X
external_id:
  arxiv:
  - '2110.00458'
  isi:
  - '000909760300001'
intvolume: '        35'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: ' https://doi.org/10.48550/arXiv.2110.00458'
month: '01'
oa: 1
oa_version: Preprint
publication: Reviews in Mathematical Physics
publication_identifier:
  issn:
  - 0129-055X
publication_status: published
publisher: World Scientific Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Bogoliubov dynamics and higher-order corrections for the regularized Nelson
  model
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 35
year: '2023'
...
