---
_id: '11429'
abstract:
- lang: eng
text: "This book constitutes the refereed proceedings of the 18th International
Symposium on Web and Wireless Geographical Information Systems, W2GIS 2022, held
in Konstanz, Germany, in April 2022.\r\nThe 7 full papers presented together with
6 short papers in the volume were carefully reviewed and selected from 16 submissions.
\ The papers cover topics that range from mobile GIS and Location-Based Services
to Spatial Information Retrieval and Wireless Sensor Networks."
alternative_title:
- LNCS
article_processing_charge: No
citation:
ama: 'Karimipour F, Storandt S, eds. Web and Wireless Geographical Information
Systems. Vol 13238. 1st ed. Cham: Springer Nature; 2022. doi:10.1007/978-3-031-06245-2'
apa: 'Karimipour, F., & Storandt, S. (Eds.). (2022). Web and Wireless Geographical
Information Systems (1st ed., Vol. 13238). Cham: Springer Nature. https://doi.org/10.1007/978-3-031-06245-2'
chicago: 'Karimipour, Farid, and Sabine Storandt, eds. Web and Wireless Geographical
Information Systems. 1st ed. Vol. 13238. Cham: Springer Nature, 2022. https://doi.org/10.1007/978-3-031-06245-2.'
ieee: 'F. Karimipour and S. Storandt, Eds., Web and Wireless Geographical Information
Systems, 1st ed., vol. 13238. Cham: Springer Nature, 2022.'
ista: 'Karimipour F, Storandt S eds. 2022. Web and Wireless Geographical Information
Systems 1st ed., Cham: Springer Nature, 153p.'
mla: Karimipour, Farid, and Sabine Storandt, editors. Web and Wireless Geographical
Information Systems. 1st ed., vol. 13238, Springer Nature, 2022, doi:10.1007/978-3-031-06245-2.
short: F. Karimipour, S. Storandt, eds., Web and Wireless Geographical Information
Systems, 1st ed., Springer Nature, Cham, 2022.
corr_author: '1'
date_created: 2022-06-02T05:40:53Z
date_published: 2022-05-01T00:00:00Z
date_updated: 2024-10-09T21:02:30Z
day: '01'
department:
- _id: HeEd
doi: 10.1007/978-3-031-06245-2
edition: '1'
editor:
- first_name: Farid
full_name: Karimipour, Farid
id: 2A2BCDC4-CF62-11E9-BE5E-3B1EE6697425
last_name: Karimipour
orcid: 0000-0001-6746-4174
- first_name: Sabine
full_name: Storandt, Sabine
last_name: Storandt
intvolume: ' 13238'
language:
- iso: eng
month: '05'
oa_version: None
page: '153'
place: Cham
publication_identifier:
eisbn:
- '9783031062452'
eissn:
- 1611-3349
isbn:
- '9783031062445'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Web and Wireless Geographical Information Systems
type: book_editor
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13238
year: '2022'
...
---
_id: '11432'
abstract:
- lang: eng
text: "This paper proposes a method for simulating liquids in large bodies of water
by coupling together a water surface wave simulator with a 3D Navier-Stokes simulator.
The surface wave simulation uses the equivalent sources method (ESM) to efficiently
animate large bodies of water with precisely controllable wave propagation behavior.
The 3D liquid simulator animates complex non-linear fluid behaviors like splashes
and breaking waves using off-the-shelf simulators using FLIP or the level set
method with semi-Lagrangian advection.\r\nWe combine the two approaches by using
the 3D solver to animate localized non-linear behaviors, and the 2D wave solver
to animate larger regions with linear surface physics. We use the surface motion
from the 3D solver as boundary conditions for 2D surface wave simulator, and we
use the velocity and surface heights from the 2D surface wave simulator as boundary
conditions for the 3D fluid simulation. We also introduce a novel technique for
removing visual artifacts caused by numerical errors in 3D fluid solvers: we use
experimental data to estimate the artificial dispersion caused by the 3D solver
and we then carefully tune the wave speeds of the 2D solver to match it, effectively
eliminating any differences in wave behavior across the boundary. To the best
of our knowledge, this is the first time such a empirically driven error compensation
approach has been used to remove coupling errors from a physics simulator.\r\nOur
coupled simulation approach leverages the strengths of each simulation technique,
animating large environments with seamless transitions between 2D and 3D physics."
acknowledged_ssus:
- _id: ScienComp
acknowledgement: We wish to thank the anonymous reviewers and the members of the Visual
Computing Group at IST Austria and MFX Team at INRIA for their valuable feedback.
This research was supported by the Scientific Service Units (SSU) of IST Austria
through resources provided by Scientific Computing. This project has received funding
from the European Research Council (ERC) under the European Union’s Horizon 2020
research and innovation programme under grant agreement No. 638176.
article_processing_charge: No
article_type: original
author:
- first_name: Camille
full_name: Schreck, Camille
id: 2B14B676-F248-11E8-B48F-1D18A9856A87
last_name: Schreck
- first_name: Christopher J
full_name: Wojtan, Christopher J
id: 3C61F1D2-F248-11E8-B48F-1D18A9856A87
last_name: Wojtan
orcid: 0000-0001-6646-5546
citation:
ama: Schreck C, Wojtan C. Coupling 3D liquid simulation with 2D wave propagation
for large scale water surface animation using the equivalent sources method. Computer
Graphics Forum. 2022;41(2):343-353. doi:10.1111/cgf.14478
apa: Schreck, C., & Wojtan, C. (2022). Coupling 3D liquid simulation with 2D
wave propagation for large scale water surface animation using the equivalent
sources method. Computer Graphics Forum. Wiley. https://doi.org/10.1111/cgf.14478
chicago: Schreck, Camille, and Chris Wojtan. “Coupling 3D Liquid Simulation with
2D Wave Propagation for Large Scale Water Surface Animation Using the Equivalent
Sources Method.” Computer Graphics Forum. Wiley, 2022. https://doi.org/10.1111/cgf.14478.
ieee: C. Schreck and C. Wojtan, “Coupling 3D liquid simulation with 2D wave propagation
for large scale water surface animation using the equivalent sources method,”
Computer Graphics Forum, vol. 41, no. 2. Wiley, pp. 343–353, 2022.
ista: Schreck C, Wojtan C. 2022. Coupling 3D liquid simulation with 2D wave propagation
for large scale water surface animation using the equivalent sources method. Computer
Graphics Forum. 41(2), 343–353.
mla: Schreck, Camille, and Chris Wojtan. “Coupling 3D Liquid Simulation with 2D
Wave Propagation for Large Scale Water Surface Animation Using the Equivalent
Sources Method.” Computer Graphics Forum, vol. 41, no. 2, Wiley, 2022,
pp. 343–53, doi:10.1111/cgf.14478.
short: C. Schreck, C. Wojtan, Computer Graphics Forum 41 (2022) 343–353.
corr_author: '1'
date_created: 2022-06-05T22:01:49Z
date_published: 2022-05-01T00:00:00Z
date_updated: 2024-10-22T09:58:19Z
day: '01'
department:
- _id: ChWo
doi: 10.1111/cgf.14478
ec_funded: 1
external_id:
isi:
- '000802723900027'
intvolume: ' 41'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://hal.archives-ouvertes.fr/hal-03641349/
month: '05'
oa: 1
oa_version: Submitted Version
page: 343-353
project:
- _id: 2533E772-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '638176'
name: 'Big Splash: Efficient Simulation of Natural Phenomena at Extremely Large
Scales'
publication: Computer Graphics Forum
publication_identifier:
eissn:
- 1467-8659
issn:
- 0167-7055
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Coupling 3D liquid simulation with 2D wave propagation for large scale water
surface animation using the equivalent sources method
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 41
year: '2022'
...
---
_id: '11435'
abstract:
- lang: eng
text: 'We introduce a new variant of quantitative Helly-type theorems: the minimal
homothetic distance of the intersection of a family of convex sets to the intersection
of a subfamily of a fixed size. As an application, we establish the following
quantitative Helly-type result for the diameter. If $K$ is the intersection of
finitely many convex bodies in $\mathbb{R}^d$, then one can select $2d$ of these
bodies whose intersection is of diameter at most $(2d)^3{diam}(K)$. The best previously
known estimate, due to Brazitikos [Bull. Hellenic Math. Soc., 62 (2018), pp. 19--25],
is $c d^{11/2}$. Moreover, we confirm that the multiplicative factor $c d^{1/2}$
conjectured by Bárány, Katchalski, and Pach [Proc. Amer. Math. Soc., 86 (1982),
pp. 109--114] cannot be improved. The bounds above follow from our key result
that concerns sparse approximation of a convex polytope by the convex hull of
a well-chosen subset of its vertices: Assume that $Q \subset {\mathbb R}^d$ is
a polytope whose centroid is the origin. Then there exist at most 2d vertices
of $Q$ whose convex hull $Q^{\prime \prime}$ satisfies $Q \subset - 8d^3 Q^{\prime
\prime}.$'
acknowledgement: "G.I. acknowledges the financial support from the Ministry of Educational
and Science of the Russian Federation in the framework of MegaGrant no 075-15-2019-1926.
M.N. was supported by the National Research, Development and Innovation Fund (NRDI)
grants K119670 and\r\nKKP-133864 as well as the Bolyai Scholarship of the Hungarian
Academy of Sciences and the New National Excellence Programme and the TKP2020-NKA-06
program provided by the NRDI."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Grigory
full_name: Ivanov, Grigory
id: 87744F66-5C6F-11EA-AFE0-D16B3DDC885E
last_name: Ivanov
- first_name: Marton
full_name: Naszodi, Marton
last_name: Naszodi
citation:
ama: 'Ivanov G, Naszodi M. A quantitative Helly-type theorem: Containment in a homothet.
SIAM Journal on Discrete Mathematics. 2022;36(2):951-957. doi:10.1137/21M1403308'
apa: 'Ivanov, G., & Naszodi, M. (2022). A quantitative Helly-type theorem: Containment
in a homothet. SIAM Journal on Discrete Mathematics. Society for Industrial
and Applied Mathematics. https://doi.org/10.1137/21M1403308'
chicago: 'Ivanov, Grigory, and Marton Naszodi. “A Quantitative Helly-Type Theorem:
Containment in a Homothet.” SIAM Journal on Discrete Mathematics. Society
for Industrial and Applied Mathematics, 2022. https://doi.org/10.1137/21M1403308.'
ieee: 'G. Ivanov and M. Naszodi, “A quantitative Helly-type theorem: Containment
in a homothet,” SIAM Journal on Discrete Mathematics, vol. 36, no. 2. Society
for Industrial and Applied Mathematics, pp. 951–957, 2022.'
ista: 'Ivanov G, Naszodi M. 2022. A quantitative Helly-type theorem: Containment
in a homothet. SIAM Journal on Discrete Mathematics. 36(2), 951–957.'
mla: 'Ivanov, Grigory, and Marton Naszodi. “A Quantitative Helly-Type Theorem: Containment
in a Homothet.” SIAM Journal on Discrete Mathematics, vol. 36, no. 2, Society
for Industrial and Applied Mathematics, 2022, pp. 951–57, doi:10.1137/21M1403308.'
short: G. Ivanov, M. Naszodi, SIAM Journal on Discrete Mathematics 36 (2022) 951–957.
date_created: 2022-06-05T22:01:50Z
date_published: 2022-04-11T00:00:00Z
date_updated: 2023-10-18T06:58:03Z
day: '11'
department:
- _id: UlWa
doi: 10.1137/21M1403308
external_id:
arxiv:
- '2103.04122'
isi:
- '000793158200002'
intvolume: ' 36'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: ' https://doi.org/10.48550/arXiv.2103.04122'
month: '04'
oa: 1
oa_version: Preprint
page: 951-957
publication: SIAM Journal on Discrete Mathematics
publication_identifier:
issn:
- 0895-4801
publication_status: published
publisher: Society for Industrial and Applied Mathematics
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'A quantitative Helly-type theorem: Containment in a homothet'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 36
year: '2022'
...
---
_id: '10016'
abstract:
- lang: eng
text: 'Auxin has always been at the forefront of research in plant physiology and
development. Since the earliest contemplations by Julius von Sachs and Charles
Darwin, more than a century-long struggle has been waged to understand its function.
This largely reflects the failures, successes, and inevitable progress in the
entire field of plant signaling and development. Here I present 14 stations on
our long and sometimes mystical journey to understand auxin. These highlights
were selected to give a flavor of the field and to show the scope and limits of
our current knowledge. A special focus is put on features that make auxin unique
among phytohormones, such as its dynamic, directional transport network, which
integrates external and internal signals, including self-organizing feedback.
Accented are persistent mysteries and controversies. The unexpected discoveries
related to rapid auxin responses and growth regulation recently disturbed our
contentment regarding understanding of the auxin signaling mechanism. These new
revelations, along with advances in technology, usher us into a new, exciting
era in auxin research. '
acknowledgement: "The author thanks the whole community of researchers consciously
or unconsciously working on questions related to auxin, whose hard work and enthusiasm
contributed to development of this exciting story. Particular thanks go to many\r\nbrilliant
present and past members of the Friml group and our numerous excellent collaborators,
without whom my own personal journey would not be possible. The way of the cross
with its 14 stations is a popular devotion among Roman Catholics and inspires them
to make a spiritual pilgrimage through contemplation of Christ on his last day.
Its aspects of gradual progress, struggle, passion, and revelation served as an
inspiration for the formal depiction of our journey to understanding auxin as described
in this review. It is in no way intended to reflect the personal beliefs of the
author and readers. I am grateful to Nick Barton, Eva Benková, Lenka Caisová, Matyáš
Fendrych, Lukáš Fiedler, Monika Frátriková, Jarmila Frimlová, Michelle Gallei, Jakub
Hajný, Lukas Hoermayer, Alexandra Mally, Ondrˇej Novák, Jan Petrášek, Aleš Pěnčík,
Steffen Vanneste, Tongda Xu, and Zhenbiao Yang for their valuable comments. Special
thanks go to Michelle Gallei for her invaluable assistance with the figures."
article_number: a039859
article_processing_charge: No
article_type: review
author:
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Friml J. Fourteen stations of auxin. Cold Spring Harbor Perspectives in
Biology. 2022;14(5). doi:10.1101/cshperspect.a039859
apa: Friml, J. (2022). Fourteen stations of auxin. Cold Spring Harbor Perspectives
in Biology. Cold Spring Harbor Laboratory Press. https://doi.org/10.1101/cshperspect.a039859
chicago: Friml, Jiří. “Fourteen Stations of Auxin.” Cold Spring Harbor Perspectives
in Biology. Cold Spring Harbor Laboratory Press, 2022. https://doi.org/10.1101/cshperspect.a039859.
ieee: J. Friml, “Fourteen stations of auxin,” Cold Spring Harbor Perspectives
in Biology, vol. 14, no. 5. Cold Spring Harbor Laboratory Press, 2022.
ista: Friml J. 2022. Fourteen stations of auxin. Cold Spring Harbor Perspectives
in Biology. 14(5), a039859.
mla: Friml, Jiří. “Fourteen Stations of Auxin.” Cold Spring Harbor Perspectives
in Biology, vol. 14, no. 5, a039859, Cold Spring Harbor Laboratory Press,
2022, doi:10.1101/cshperspect.a039859.
short: J. Friml, Cold Spring Harbor Perspectives in Biology 14 (2022).
corr_author: '1'
date_created: 2021-09-14T11:36:53Z
date_published: 2022-05-27T00:00:00Z
date_updated: 2025-05-14T11:22:36Z
day: '27'
department:
- _id: JiFr
doi: 10.1101/cshperspect.a039859
external_id:
isi:
- '000806563000003'
pmid:
- '34400554'
intvolume: ' 14'
isi: 1
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: 'https://doi.org/10.1101/cshperspect.a039859 '
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
publication: Cold Spring Harbor Perspectives in Biology
publication_identifier:
issn:
- 1943-0264
publication_status: published
publisher: Cold Spring Harbor Laboratory Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Fourteen stations of auxin
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2022'
...
---
_id: '10181'
abstract:
- lang: eng
text: In this article we study some geometric properties of proximally smooth sets.
First, we introduce a modification of the metric projection and prove its existence.
Then we provide an algorithm for constructing a rectifiable curve between two
sufficiently close points of a proximally smooth set in a uniformly convex and
uniformly smooth Banach space, with the moduli of smoothness and convexity of
power type. Our algorithm returns a reasonably short curve between two sufficiently
close points of a proximally smooth set, is iterative and uses our modification
of the metric projection. We estimate the length of the constructed curve and
its deviation from the segment with the same endpoints. These estimates coincide
up to a constant factor with those for the geodesics in a proximally smooth set
in a Hilbert space.
acknowledgement: Theorem 2 was obtained at Steklov Mathematical Institute RAS and
supported by Russian Science Foundation, grant N 19-11-00087.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Grigory
full_name: Ivanov, Grigory
id: 87744F66-5C6F-11EA-AFE0-D16B3DDC885E
last_name: Ivanov
- first_name: Mariana S.
full_name: Lopushanski, Mariana S.
last_name: Lopushanski
citation:
ama: Ivanov G, Lopushanski MS. Rectifiable curves in proximally smooth sets. Set-Valued
and Variational Analysis. 2022;30(2):657-675. doi:10.1007/s11228-021-00612-1
apa: Ivanov, G., & Lopushanski, M. S. (2022). Rectifiable curves in proximally
smooth sets. Set-Valued and Variational Analysis. Springer Nature. https://doi.org/10.1007/s11228-021-00612-1
chicago: Ivanov, Grigory, and Mariana S. Lopushanski. “Rectifiable Curves in Proximally
Smooth Sets.” Set-Valued and Variational Analysis. Springer Nature, 2022.
https://doi.org/10.1007/s11228-021-00612-1.
ieee: G. Ivanov and M. S. Lopushanski, “Rectifiable curves in proximally smooth
sets,” Set-Valued and Variational Analysis, vol. 30, no. 2. Springer Nature,
pp. 657–675, 2022.
ista: Ivanov G, Lopushanski MS. 2022. Rectifiable curves in proximally smooth sets.
Set-Valued and Variational Analysis. 30(2), 657–675.
mla: Ivanov, Grigory, and Mariana S. Lopushanski. “Rectifiable Curves in Proximally
Smooth Sets.” Set-Valued and Variational Analysis, vol. 30, no. 2, Springer
Nature, 2022, pp. 657–75, doi:10.1007/s11228-021-00612-1.
short: G. Ivanov, M.S. Lopushanski, Set-Valued and Variational Analysis 30 (2022)
657–675.
date_created: 2021-10-24T22:01:35Z
date_published: 2022-06-01T00:00:00Z
date_updated: 2024-05-22T09:23:37Z
day: '01'
department:
- _id: UlWa
doi: 10.1007/s11228-021-00612-1
external_id:
arxiv:
- '2012.10691'
isi:
- '000705774800001'
intvolume: ' 30'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2012.10691
month: '06'
oa: 1
oa_version: Published Version
page: 657-675
publication: Set-Valued and Variational Analysis
publication_identifier:
eissn:
- 1877-0541
issn:
- 0927-6947
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Rectifiable curves in proximally smooth sets
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 30
year: '2022'
...
---
_id: '10182'
abstract:
- lang: eng
text: The mitochondrial oxidative phosphorylation system is central to cellular
metabolism. It comprises five enzymatic complexes and two mobile electron carriers
that work in a mitochondrial respiratory chain. By coupling the oxidation of reducing
equivalents coming into mitochondria to the generation and subsequent dissipation
of a proton gradient across the inner mitochondrial membrane, this electron transport
chain drives the production of ATP, which is then used as a primary energy carrier
in virtually all cellular processes. Minimal perturbations of the respiratory
chain activity are linked to diseases; therefore, it is necessary to understand
how these complexes are assembled and regulated and how they function. In this
Review, we outline the latest assembly models for each individual complex, and
we also highlight the recent discoveries indicating that the formation of larger
assemblies, known as respiratory supercomplexes, originates from the association
of the intermediates of individual complexes. We then discuss how recent cryo-electron
microscopy structures have been key to answering open questions on the function
of the electron transport chain in mitochondrial respiration and how supercomplexes
and other factors, including metabolites, can regulate the activity of the single
complexes. When relevant, we discuss how these mechanisms contribute to physiology
and outline their deregulation in human diseases.
article_processing_charge: No
article_type: original
author:
- first_name: Irene
full_name: Vercellino, Irene
id: 3ED6AF16-F248-11E8-B48F-1D18A9856A87
last_name: Vercellino
orcid: ' 0000-0001-5618-3449'
- first_name: Leonid A
full_name: Sazanov, Leonid A
id: 338D39FE-F248-11E8-B48F-1D18A9856A87
last_name: Sazanov
orcid: 0000-0002-0977-7989
citation:
ama: Vercellino I, Sazanov LA. The assembly, regulation and function of the mitochondrial
respiratory chain. Nature Reviews Molecular Cell Biology. 2022;23:141–161.
doi:10.1038/s41580-021-00415-0
apa: Vercellino, I., & Sazanov, L. A. (2022). The assembly, regulation and function
of the mitochondrial respiratory chain. Nature Reviews Molecular Cell Biology.
Springer Nature. https://doi.org/10.1038/s41580-021-00415-0
chicago: Vercellino, Irene, and Leonid A Sazanov. “The Assembly, Regulation and
Function of the Mitochondrial Respiratory Chain.” Nature Reviews Molecular
Cell Biology. Springer Nature, 2022. https://doi.org/10.1038/s41580-021-00415-0.
ieee: I. Vercellino and L. A. Sazanov, “The assembly, regulation and function of
the mitochondrial respiratory chain,” Nature Reviews Molecular Cell Biology,
vol. 23. Springer Nature, pp. 141–161, 2022.
ista: Vercellino I, Sazanov LA. 2022. The assembly, regulation and function of the
mitochondrial respiratory chain. Nature Reviews Molecular Cell Biology. 23, 141–161.
mla: Vercellino, Irene, and Leonid A. Sazanov. “The Assembly, Regulation and Function
of the Mitochondrial Respiratory Chain.” Nature Reviews Molecular Cell Biology,
vol. 23, Springer Nature, 2022, pp. 141–161, doi:10.1038/s41580-021-00415-0.
short: I. Vercellino, L.A. Sazanov, Nature Reviews Molecular Cell Biology 23 (2022)
141–161.
corr_author: '1'
date_created: 2021-10-24T22:01:35Z
date_published: 2022-02-01T00:00:00Z
date_updated: 2024-10-09T21:01:03Z
day: '01'
department:
- _id: LeSa
doi: 10.1038/s41580-021-00415-0
external_id:
isi:
- '000705697100001'
pmid:
- '34621061'
intvolume: ' 23'
isi: 1
language:
- iso: eng
month: '02'
oa_version: None
page: 141–161
pmid: 1
publication: Nature Reviews Molecular Cell Biology
publication_identifier:
eissn:
- 1471-0080
issn:
- 1471-0072
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: The assembly, regulation and function of the mitochondrial respiratory chain
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 23
year: '2022'
...
---
_id: '10211'
abstract:
- lang: eng
text: "We study the problem of recovering an unknown signal \U0001D465\U0001D465
given measurements obtained from a generalized linear model with a Gaussian sensing
matrix. Two popular solutions are based on a linear estimator \U0001D465\U0001D465^L
and a spectral estimator \U0001D465\U0001D465^s. The former is a data-dependent
linear combination of the columns of the measurement matrix, and its analysis
is quite simple. The latter is the principal eigenvector of a data-dependent matrix,
and a recent line of work has studied its performance. In this paper, we show
how to optimally combine \U0001D465\U0001D465^L and \U0001D465\U0001D465^s. At
the heart of our analysis is the exact characterization of the empirical joint
distribution of (\U0001D465\U0001D465,\U0001D465\U0001D465^L,\U0001D465\U0001D465^s)
in the high-dimensional limit. This allows us to compute the Bayes-optimal combination
of \U0001D465\U0001D465^L and \U0001D465\U0001D465^s, given the limiting distribution
of the signal \U0001D465\U0001D465. When the distribution of the signal is Gaussian,
then the Bayes-optimal combination has the form \U0001D703\U0001D465\U0001D465^L+\U0001D465\U0001D465^s
and we derive the optimal combination coefficient. In order to establish the limiting
distribution of (\U0001D465\U0001D465,\U0001D465\U0001D465^L,\U0001D465\U0001D465^s),
we design and analyze an approximate message passing algorithm whose iterates
give \U0001D465\U0001D465^L and approach \U0001D465\U0001D465^s. Numerical simulations
demonstrate the improvement of the proposed combination with respect to the two
methods considered separately."
acknowledgement: M. Mondelli would like to thank Andrea Montanari for helpful discussions.
All the authors would like to thank the anonymous reviewers for their helpful comments.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Marco
full_name: Mondelli, Marco
id: 27EB676C-8706-11E9-9510-7717E6697425
last_name: Mondelli
orcid: 0000-0002-3242-7020
- first_name: Christos
full_name: Thrampoulidis, Christos
last_name: Thrampoulidis
- first_name: Ramji
full_name: Venkataramanan, Ramji
last_name: Venkataramanan
citation:
ama: Mondelli M, Thrampoulidis C, Venkataramanan R. Optimal combination of linear
and spectral estimators for generalized linear models. Foundations of Computational
Mathematics. 2022;22(5):1513-1566. doi:10.1007/s10208-021-09531-x
apa: Mondelli, M., Thrampoulidis, C., & Venkataramanan, R. (2022). Optimal combination
of linear and spectral estimators for generalized linear models. Foundations
of Computational Mathematics. Springer. https://doi.org/10.1007/s10208-021-09531-x
chicago: Mondelli, Marco, Christos Thrampoulidis, and Ramji Venkataramanan. “Optimal
Combination of Linear and Spectral Estimators for Generalized Linear Models.”
Foundations of Computational Mathematics. Springer, 2022. https://doi.org/10.1007/s10208-021-09531-x.
ieee: M. Mondelli, C. Thrampoulidis, and R. Venkataramanan, “Optimal combination
of linear and spectral estimators for generalized linear models,” Foundations
of Computational Mathematics, vol. 22, no. 5. Springer, pp. 1513–1566, 2022.
ista: Mondelli M, Thrampoulidis C, Venkataramanan R. 2022. Optimal combination of
linear and spectral estimators for generalized linear models. Foundations of Computational
Mathematics. 22(5), 1513–1566.
mla: Mondelli, Marco, et al. “Optimal Combination of Linear and Spectral Estimators
for Generalized Linear Models.” Foundations of Computational Mathematics,
vol. 22, no. 5, Springer, 2022, pp. 1513–66, doi:10.1007/s10208-021-09531-x.
short: M. Mondelli, C. Thrampoulidis, R. Venkataramanan, Foundations of Computational
Mathematics 22 (2022) 1513–1566.
date_created: 2021-11-03T10:59:08Z
date_published: 2022-10-01T00:00:00Z
date_updated: 2025-04-15T06:53:08Z
day: '01'
ddc:
- '510'
department:
- _id: MaMo
doi: 10.1007/s10208-021-09531-x
external_id:
arxiv:
- '2008.03326'
isi:
- '000685721000001'
file:
- access_level: open_access
checksum: 9ea12dd8045a0678000a3a59295221cb
content_type: application/pdf
creator: alisjak
date_created: 2021-12-13T15:47:54Z
date_updated: 2021-12-13T15:47:54Z
file_id: '10542'
file_name: 2021_Springer_Mondelli.pdf
file_size: 2305731
relation: main_file
success: 1
file_date_updated: 2021-12-13T15:47:54Z
has_accepted_license: '1'
intvolume: ' 22'
isi: 1
issue: '5'
keyword:
- Applied Mathematics
- Computational Theory and Mathematics
- Computational Mathematics
- Analysis
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 1513-1566
project:
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
name: IST Austria Open Access Fund
publication: Foundations of Computational Mathematics
publication_identifier:
eissn:
- 1615-3383
issn:
- 1615-3375
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: '1'
status: public
title: Optimal combination of linear and spectral estimators for generalized linear
models
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 22
year: '2022'
...
---
_id: '10282'
abstract:
- lang: eng
text: Advanced transcriptome sequencing has revealed that the majority of eukaryotic
genes undergo alternative splicing (AS). Nonetheless, little effort has been dedicated
to investigating the functional relevance of particular splicing events, even
those in the key developmental and hormonal regulators. Combining approaches of
genetics, biochemistry and advanced confocal microscopy, we describe the impact
of alternative splicing on the PIN7 gene in the model plant Arabidopsis thaliana.
PIN7 encodes a polarly localized transporter for the phytohormone auxin and produces
two evolutionarily conserved transcripts, PIN7a and PIN7b. PIN7a and PIN7b, differing
in a four amino acid stretch, exhibit almost identical expression patterns and
subcellular localization. We reveal that they are closely associated and mutually
influence each other's mobility within the plasma membrane. Phenotypic complementation
tests indicate that the functional contribution of PIN7b per se is minor, but
it markedly reduces the prominent PIN7a activity, which is required for correct
seedling apical hook formation and auxin-mediated tropic responses. Our results
establish alternative splicing of the PIN family as a conserved, functionally
relevant mechanism, revealing an additional regulatory level of auxin-mediated
plant development.
acknowledgement: We thank Claus Schwechheimer for the pin34 and pin347 seeds, Yuliia
Mironova for technical assistance, Ksenia Timofeyenko and Dmitry Konovalov for help
with the evolutional analysis, Konstantin Kutashev and Siarhei Dabravolski for assistance
with FRET-FLIM, Huibin Han for advice with hypocotyl imaging, Karel Müller for the
initial qRT-PCR on the tobacco cell lines, Stano Pekár for suggestions regarding
the statistical analysis of the morphodynamic measurements, and Jozef Mravec, Dolf
Weijers and Lindy Abas for their comments on the manuscript. This work was supported
by the Czech Science Foundation (projects 16-26428S and 19-23773S to IK, MH and
KRůžička, 19-18917S to JHumpolíčková and 18-26981S to JF), and the Ministry of Education,
Youth and Sports of the Czech Republic (MEYS, CZ.02.1.01/0.0/0.0/16_019/0000738)
to KRůžička and JHejátko. The imaging facilities of the Institute of Experimental
Botany and CEITEC are supported by MEYS (LM2018129 – Czech BioImaging and CZ.02.1.01/0.0/0.0/16_013/0001775).
The authors declare no competing interests.
article_processing_charge: No
article_type: original
author:
- first_name: Ivan
full_name: Kashkan, Ivan
last_name: Kashkan
- first_name: Mónika
full_name: Hrtyan, Mónika
id: 45A71A74-F248-11E8-B48F-1D18A9856A87
last_name: Hrtyan
- first_name: Katarzyna
full_name: Retzer, Katarzyna
last_name: Retzer
- first_name: Jana
full_name: Humpolíčková, Jana
last_name: Humpolíčková
- first_name: Aswathy
full_name: Jayasree, Aswathy
last_name: Jayasree
- first_name: Roberta
full_name: Filepová, Roberta
last_name: Filepová
- first_name: Zuzana
full_name: Vondráková, Zuzana
last_name: Vondráková
- first_name: Sibu
full_name: Simon, Sibu
id: 4542EF9A-F248-11E8-B48F-1D18A9856A87
last_name: Simon
orcid: 0000-0002-1998-6741
- first_name: Debbie
full_name: Rombaut, Debbie
last_name: Rombaut
- first_name: Thomas B.
full_name: Jacobs, Thomas B.
last_name: Jacobs
- first_name: Mikko J.
full_name: Frilander, Mikko J.
last_name: Frilander
- first_name: Jan
full_name: Hejátko, Jan
last_name: Hejátko
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Jan
full_name: Petrášek, Jan
last_name: Petrášek
- first_name: Kamil
full_name: Růžička, Kamil
last_name: Růžička
citation:
ama: Kashkan I, Hrtyan M, Retzer K, et al. Mutually opposing activity of PIN7 splicing
isoforms is required for auxin-mediated tropic responses in Arabidopsis thaliana.
New Phytologist. 2022;233(1):329-343. doi:10.1111/nph.17792
apa: Kashkan, I., Hrtyan, M., Retzer, K., Humpolíčková, J., Jayasree, A., Filepová,
R., … Růžička, K. (2022). Mutually opposing activity of PIN7 splicing isoforms
is required for auxin-mediated tropic responses in Arabidopsis thaliana. New
Phytologist. Wiley. https://doi.org/10.1111/nph.17792
chicago: Kashkan, Ivan, Mónika Hrtyan, Katarzyna Retzer, Jana Humpolíčková, Aswathy
Jayasree, Roberta Filepová, Zuzana Vondráková, et al. “Mutually Opposing Activity
of PIN7 Splicing Isoforms Is Required for Auxin-Mediated Tropic Responses in Arabidopsis
Thaliana.” New Phytologist. Wiley, 2022. https://doi.org/10.1111/nph.17792.
ieee: I. Kashkan et al., “Mutually opposing activity of PIN7 splicing isoforms
is required for auxin-mediated tropic responses in Arabidopsis thaliana,” New
Phytologist, vol. 233, no. 1. Wiley, pp. 329–343, 2022.
ista: Kashkan I, Hrtyan M, Retzer K, Humpolíčková J, Jayasree A, Filepová R, Vondráková
Z, Simon S, Rombaut D, Jacobs TB, Frilander MJ, Hejátko J, Friml J, Petrášek J,
Růžička K. 2022. Mutually opposing activity of PIN7 splicing isoforms is required
for auxin-mediated tropic responses in Arabidopsis thaliana. New Phytologist.
233(1), 329–343.
mla: Kashkan, Ivan, et al. “Mutually Opposing Activity of PIN7 Splicing Isoforms
Is Required for Auxin-Mediated Tropic Responses in Arabidopsis Thaliana.” New
Phytologist, vol. 233, no. 1, Wiley, 2022, pp. 329–43, doi:10.1111/nph.17792.
short: I. Kashkan, M. Hrtyan, K. Retzer, J. Humpolíčková, A. Jayasree, R. Filepová,
Z. Vondráková, S. Simon, D. Rombaut, T.B. Jacobs, M.J. Frilander, J. Hejátko,
J. Friml, J. Petrášek, K. Růžička, New Phytologist 233 (2022) 329–343.
date_created: 2021-11-14T23:01:24Z
date_published: 2022-01-01T00:00:00Z
date_updated: 2024-05-22T11:33:15Z
day: '01'
department:
- _id: JiFr
doi: 10.1111/nph.17792
external_id:
isi:
- '000714678100001'
pmid:
- '34637542'
intvolume: ' 233'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.biorxiv.org/content/10.1101/2020.05.02.074070v2
month: '01'
oa: 1
oa_version: Preprint
page: 329-343
pmid: 1
publication: New Phytologist
publication_identifier:
eissn:
- 1469-8137
issn:
- 0028-646X
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mutually opposing activity of PIN7 splicing isoforms is required for auxin-mediated
tropic responses in Arabidopsis thaliana
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 233
year: '2022'
...
---
_id: '10284'
abstract:
- lang: eng
text: Infections early in life can have enduring effects on an organism's development
and immunity. In this study, we show that this equally applies to developing ‘superorganisms’––incipient
social insect colonies. When we exposed newly mated Lasius niger ant queens to
a low pathogen dose, their colonies grew more slowly than controls before winter,
but reached similar sizes afterwards. Independent of exposure, queen hibernation
survival improved when the ratio of pupae to workers was small. Queens that reared
fewer pupae before worker emergence exhibited lower pathogen levels, indicating
that high brood rearing efforts interfere with the ability of the queen's immune
system to suppress pathogen proliferation. Early-life queen pathogen exposure
also improved the immunocompetence of her worker offspring, as demonstrated by
challenging the workers to the same pathogen a year later. Transgenerational transfer
of the queen's pathogen experience to her workforce can hence durably reduce the
disease susceptibility of the whole superorganism.
acknowledged_ssus:
- _id: ScienComp
acknowledgement: The authors are grateful to G. Tkačik and V. Mireles for advice on
data analyses and to A. Schloegl for help using the IST Austria HPC cluster for
data processing. The authors thank J. Eilenberg for providing the fungal strain
and A.V. Grasse for support with the molecular analysis. The authors also thank
the Social Immunity group at IST Austria, in particular B. Milutinović, for discussions
throughout and comments on the manuscript.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Barbara E
full_name: Casillas Perez, Barbara E
id: 351ED2AA-F248-11E8-B48F-1D18A9856A87
last_name: Casillas Perez
- first_name: Christopher
full_name: Pull, Christopher
id: 3C7F4840-F248-11E8-B48F-1D18A9856A87
last_name: Pull
orcid: 0000-0003-1122-3982
- first_name: Filip
full_name: Naiser, Filip
last_name: Naiser
- first_name: Elisabeth
full_name: Naderlinger, Elisabeth
id: 31757262-F248-11E8-B48F-1D18A9856A87
last_name: Naderlinger
- first_name: Jiri
full_name: Matas, Jiri
last_name: Matas
- first_name: Sylvia
full_name: Cremer, Sylvia
id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
last_name: Cremer
orcid: 0000-0002-2193-3868
citation:
ama: Casillas Perez BE, Pull C, Naiser F, Naderlinger E, Matas J, Cremer S. Early
queen infection shapes developmental dynamics and induces long-term disease protection
in incipient ant colonies. Ecology Letters. 2022;25(1):89-100. doi:10.1111/ele.13907
apa: Casillas Perez, B. E., Pull, C., Naiser, F., Naderlinger, E., Matas, J., &
Cremer, S. (2022). Early queen infection shapes developmental dynamics and induces
long-term disease protection in incipient ant colonies. Ecology Letters.
Wiley. https://doi.org/10.1111/ele.13907
chicago: Casillas Perez, Barbara E, Christopher Pull, Filip Naiser, Elisabeth Naderlinger,
Jiri Matas, and Sylvia Cremer. “Early Queen Infection Shapes Developmental Dynamics
and Induces Long-Term Disease Protection in Incipient Ant Colonies.” Ecology
Letters. Wiley, 2022. https://doi.org/10.1111/ele.13907.
ieee: B. E. Casillas Perez, C. Pull, F. Naiser, E. Naderlinger, J. Matas, and S.
Cremer, “Early queen infection shapes developmental dynamics and induces long-term
disease protection in incipient ant colonies,” Ecology Letters, vol. 25,
no. 1. Wiley, pp. 89–100, 2022.
ista: Casillas Perez BE, Pull C, Naiser F, Naderlinger E, Matas J, Cremer S. 2022.
Early queen infection shapes developmental dynamics and induces long-term disease
protection in incipient ant colonies. Ecology Letters. 25(1), 89–100.
mla: Casillas Perez, Barbara E., et al. “Early Queen Infection Shapes Developmental
Dynamics and Induces Long-Term Disease Protection in Incipient Ant Colonies.”
Ecology Letters, vol. 25, no. 1, Wiley, 2022, pp. 89–100, doi:10.1111/ele.13907.
short: B.E. Casillas Perez, C. Pull, F. Naiser, E. Naderlinger, J. Matas, S. Cremer,
Ecology Letters 25 (2022) 89–100.
corr_author: '1'
date_created: 2021-11-14T23:01:25Z
date_published: 2022-01-01T00:00:00Z
date_updated: 2025-04-14T13:55:31Z
day: '01'
ddc:
- '573'
department:
- _id: SyCr
doi: 10.1111/ele.13907
ec_funded: 1
external_id:
isi:
- '000713396100001'
pmid:
- '34725912'
file:
- access_level: open_access
checksum: 0bd4210400e9876609b7c538ab4f9a3c
content_type: application/pdf
creator: cchlebak
date_created: 2022-02-03T13:37:11Z
date_updated: 2022-02-03T13:37:11Z
file_id: '10721'
file_name: 2021_EcologyLetters_CasillasPerez.pdf
file_size: 700087
relation: main_file
success: 1
file_date_updated: 2022-02-03T13:37:11Z
has_accepted_license: '1'
intvolume: ' 25'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 89-100
pmid: 1
project:
- _id: 2649B4DE-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '771402'
name: Epidemics in ant societies on a chip
publication: Ecology Letters
publication_identifier:
eissn:
- 1461-0248
issn:
- 1461-023X
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
record:
- id: '13061'
relation: research_data
status: public
scopus_import: '1'
status: public
title: Early queen infection shapes developmental dynamics and induces long-term disease
protection in incipient ant colonies
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 25
year: '2022'
...
---
_id: '10335'
abstract:
- lang: eng
text: "Van der Holst and Pendavingh introduced a graph parameter σ, which coincides
with the more famous Colin de Verdière graph parameter μ for small values. However,
the definition of a is much more geometric/topological directly reflecting embeddability
properties of the graph. They proved μ(G) ≤ σ(G) + 2 and conjectured σ(G) ≤ σ(G)
for any graph G. We confirm this conjecture. As far as we know, this is the first
topological upper bound on σ(G) which is, in general, tight.\r\nEquality between
μ and σ does not hold in general as van der Holst and Pendavingh showed that there
is a graph G with μ(G) ≤ 18 and σ(G) ≥ 20. We show that the gap appears at much
smaller values, namely, we exhibit a graph H for which μ(H) ≥ 7 and σ(H) ≥ 8.
We also prove that, in general, the gap can be large: The incidence graphs Hq
of finite projective planes of order q satisfy μ(Hq) ∈ O(q3/2) and σ(Hq) ≥ q2."
acknowledgement: 'V. K. gratefully acknowledges the support of Austrian Science Fund
(FWF): P 30902-N35. This work was done mostly while he was employed at the University
of Innsbruck. During the early stage of this research, V. K. was partially supported
by Charles University project GAUK 926416. M. T. is supported by the grant no. 19-04113Y
of the Czech Science Foundation(GA ˇCR) and partially supported by Charles University
project UNCE/SCI/004.'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Vojtech
full_name: Kaluza, Vojtech
id: 21AE5134-9EAC-11EA-BEA2-D7BD3DDC885E
last_name: Kaluza
orcid: 0000-0002-2512-8698
- first_name: Martin
full_name: Tancer, Martin
id: 38AC689C-F248-11E8-B48F-1D18A9856A87
last_name: Tancer
orcid: 0000-0002-1191-6714
citation:
ama: Kaluza V, Tancer M. Even maps, the Colin de Verdière number and representations
of graphs. Combinatorica. 2022;42:1317-1345. doi:10.1007/s00493-021-4443-7
apa: Kaluza, V., & Tancer, M. (2022). Even maps, the Colin de Verdière number
and representations of graphs. Combinatorica. Springer Nature. https://doi.org/10.1007/s00493-021-4443-7
chicago: Kaluza, Vojtech, and Martin Tancer. “Even Maps, the Colin de Verdière Number
and Representations of Graphs.” Combinatorica. Springer Nature, 2022. https://doi.org/10.1007/s00493-021-4443-7.
ieee: V. Kaluza and M. Tancer, “Even maps, the Colin de Verdière number and representations
of graphs,” Combinatorica, vol. 42. Springer Nature, pp. 1317–1345, 2022.
ista: Kaluza V, Tancer M. 2022. Even maps, the Colin de Verdière number and representations
of graphs. Combinatorica. 42, 1317–1345.
mla: Kaluza, Vojtech, and Martin Tancer. “Even Maps, the Colin de Verdière Number
and Representations of Graphs.” Combinatorica, vol. 42, Springer Nature,
2022, pp. 1317–45, doi:10.1007/s00493-021-4443-7.
short: V. Kaluza, M. Tancer, Combinatorica 42 (2022) 1317–1345.
corr_author: '1'
date_created: 2021-11-25T13:49:16Z
date_published: 2022-12-01T00:00:00Z
date_updated: 2024-10-09T20:53:51Z
day: '01'
ddc:
- '514'
- '516'
department:
- _id: UlWa
doi: 10.1007/s00493-021-4443-7
external_id:
arxiv:
- '1907.05055'
isi:
- '000798210100003'
intvolume: ' 42'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: ' https://doi.org/10.48550/arXiv.1907.05055'
month: '12'
oa: 1
oa_version: Preprint
page: 1317-1345
publication: Combinatorica
publication_identifier:
issn:
- 0209-9683
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Even maps, the Colin de Verdière number and representations of graphs
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 42
year: '2022'
...
---
_id: '10364'
abstract:
- lang: eng
text: 'This paper characterizes the latency of the simplified successive-cancellation
(SSC) decoding scheme for polar codes under hardware resource constraints. In
particular, when the number of processing elements P that can perform SSC decoding
operations in parallel is limited, as is the case in practice, the latency of
SSC decoding is O(N1-1/μ + N/P log2 log2 N/P), where N is the block length of
the code and μ is the scaling exponent of the channel. Three direct consequences
of this bound are presented. First, in a fully-parallel implementation where P
= N/2, the latency of SSC decoding is O(N1-1/μ), which is sublinear in the block
length. This recovers a result from our earlier work. Second, in a fully-serial
implementation where P = 1, the latency of SSC decoding scales as O(N log2 log2
N). The multiplicative constant is also calculated: we show that the latency of
SSC decoding when P = 1 is given by (2 + o(1))N log2 log2 N. Third, in a semi-parallel
implementation, the smallest P that gives the same latency as that of the fully-parallel
implementation is P = N1/μ. The tightness of our bound on SSC decoding latency
and the applicability of the foregoing results is validated through extensive
simulations.'
acknowledgement: "S. A. Hashemi is supported by a Postdoctoral Fellowship from the
Natural Sciences and\r\nEngineering Research Council of Canada (NSERC) and by Huawei.
M. Mondelli is partially\r\nsupported by the 2019 Lopez-Loreta Prize. A. Fazeli
and A. Vardy were supported in part by\r\nthe National Science Foundation under
Grant CCF-1764104."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Seyyed Ali
full_name: Hashemi, Seyyed Ali
last_name: Hashemi
- first_name: Marco
full_name: Mondelli, Marco
id: 27EB676C-8706-11E9-9510-7717E6697425
last_name: Mondelli
orcid: 0000-0002-3242-7020
- first_name: Arman
full_name: Fazeli, Arman
last_name: Fazeli
- first_name: Alexander
full_name: Vardy, Alexander
last_name: Vardy
- first_name: John
full_name: Cioffi, John
last_name: Cioffi
- first_name: Andrea
full_name: Goldsmith, Andrea
last_name: Goldsmith
citation:
ama: Hashemi SA, Mondelli M, Fazeli A, Vardy A, Cioffi J, Goldsmith A. Parallelism
versus latency in simplified successive-cancellation decoding of polar codes.
IEEE Transactions on Wireless Communications. 2022;21(6):3909-3920. doi:10.1109/TWC.2021.3125626
apa: Hashemi, S. A., Mondelli, M., Fazeli, A., Vardy, A., Cioffi, J., & Goldsmith,
A. (2022). Parallelism versus latency in simplified successive-cancellation decoding
of polar codes. IEEE Transactions on Wireless Communications. Institute
of Electrical and Electronics Engineers. https://doi.org/10.1109/TWC.2021.3125626
chicago: Hashemi, Seyyed Ali, Marco Mondelli, Arman Fazeli, Alexander Vardy, John
Cioffi, and Andrea Goldsmith. “Parallelism versus Latency in Simplified Successive-Cancellation
Decoding of Polar Codes.” IEEE Transactions on Wireless Communications.
Institute of Electrical and Electronics Engineers, 2022. https://doi.org/10.1109/TWC.2021.3125626.
ieee: S. A. Hashemi, M. Mondelli, A. Fazeli, A. Vardy, J. Cioffi, and A. Goldsmith,
“Parallelism versus latency in simplified successive-cancellation decoding of
polar codes,” IEEE Transactions on Wireless Communications, vol. 21, no.
6. Institute of Electrical and Electronics Engineers, pp. 3909–3920, 2022.
ista: Hashemi SA, Mondelli M, Fazeli A, Vardy A, Cioffi J, Goldsmith A. 2022. Parallelism
versus latency in simplified successive-cancellation decoding of polar codes.
IEEE Transactions on Wireless Communications. 21(6), 3909–3920.
mla: Hashemi, Seyyed Ali, et al. “Parallelism versus Latency in Simplified Successive-Cancellation
Decoding of Polar Codes.” IEEE Transactions on Wireless Communications,
vol. 21, no. 6, Institute of Electrical and Electronics Engineers, 2022, pp. 3909–20,
doi:10.1109/TWC.2021.3125626.
short: S.A. Hashemi, M. Mondelli, A. Fazeli, A. Vardy, J. Cioffi, A. Goldsmith,
IEEE Transactions on Wireless Communications 21 (2022) 3909–3920.
date_created: 2021-11-28T23:01:29Z
date_published: 2022-06-01T00:00:00Z
date_updated: 2025-04-15T07:50:11Z
day: '01'
department:
- _id: MaMo
doi: 10.1109/TWC.2021.3125626
external_id:
arxiv:
- '2012.13378'
isi:
- '000809406400028'
intvolume: ' 21'
isi: 1
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2012.13378
month: '06'
oa: 1
oa_version: Preprint
page: 3909-3920
project:
- _id: 059876FA-7A3F-11EA-A408-12923DDC885E
name: Prix Lopez-Loretta 2019 - Marco Mondelli
publication: IEEE Transactions on Wireless Communications
publication_identifier:
eissn:
- 1558-2248
issn:
- 1536-1276
publication_status: published
publisher: Institute of Electrical and Electronics Engineers
quality_controlled: '1'
related_material:
record:
- id: '10053'
relation: earlier_version
status: public
scopus_import: '1'
status: public
title: Parallelism versus latency in simplified successive-cancellation decoding of
polar codes
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 21
year: '2022'
...
---
_id: '10413'
abstract:
- lang: eng
text: Motivated by the recent introduction of the intrinsic semilattice entropy,
we study generalized quasi-metric semilattices and their categories. We investigate
the relationship between these objects and generalized semivaluations, extending
Nakamura and Schellekens' approach. Finally, we use this correspondence to compare
the intrinsic semilattice entropy and the semigroup entropy induced in particular
situations, like sets, torsion abelian groups and vector spaces.
acknowledgement: Dedicated to the memory of Hans-Peter Künzi.
article_number: '107916'
article_processing_charge: No
article_type: original
author:
- first_name: Dikran
full_name: Dikranjan, Dikran
last_name: Dikranjan
- first_name: Anna
full_name: Giordano Bruno, Anna
last_name: Giordano Bruno
- first_name: Hans Peter
full_name: Künzi, Hans Peter
last_name: Künzi
- first_name: Nicolò
full_name: Zava, Nicolò
id: c8b3499c-7a77-11eb-b046-aa368cbbf2ad
last_name: Zava
orcid: 0000-0001-8686-1888
- first_name: Daniele
full_name: Toller, Daniele
last_name: Toller
citation:
ama: Dikranjan D, Giordano Bruno A, Künzi HP, Zava N, Toller D. Generalized quasi-metric
semilattices. Topology and its Applications. 2022;309. doi:10.1016/j.topol.2021.107916
apa: Dikranjan, D., Giordano Bruno, A., Künzi, H. P., Zava, N., & Toller, D.
(2022). Generalized quasi-metric semilattices. Topology and Its Applications.
Elsevier. https://doi.org/10.1016/j.topol.2021.107916
chicago: Dikranjan, Dikran, Anna Giordano Bruno, Hans Peter Künzi, Nicolò Zava,
and Daniele Toller. “Generalized Quasi-Metric Semilattices.” Topology and Its
Applications. Elsevier, 2022. https://doi.org/10.1016/j.topol.2021.107916.
ieee: D. Dikranjan, A. Giordano Bruno, H. P. Künzi, N. Zava, and D. Toller, “Generalized
quasi-metric semilattices,” Topology and its Applications, vol. 309. Elsevier,
2022.
ista: Dikranjan D, Giordano Bruno A, Künzi HP, Zava N, Toller D. 2022. Generalized
quasi-metric semilattices. Topology and its Applications. 309, 107916.
mla: Dikranjan, Dikran, et al. “Generalized Quasi-Metric Semilattices.” Topology
and Its Applications, vol. 309, 107916, Elsevier, 2022, doi:10.1016/j.topol.2021.107916.
short: D. Dikranjan, A. Giordano Bruno, H.P. Künzi, N. Zava, D. Toller, Topology
and Its Applications 309 (2022).
corr_author: '1'
date_created: 2021-12-05T23:01:44Z
date_published: 2022-03-15T00:00:00Z
date_updated: 2024-10-09T21:01:16Z
day: '15'
department:
- _id: HeEd
doi: 10.1016/j.topol.2021.107916
external_id:
isi:
- '000791838800012'
intvolume: ' 309'
isi: 1
language:
- iso: eng
month: '03'
oa_version: None
publication: Topology and its Applications
publication_identifier:
issn:
- 0166-8641
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Generalized quasi-metric semilattices
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 309
year: '2022'
...
---
_id: '10530'
abstract:
- lang: eng
text: "Cell dispersion from a confined area is fundamental in a number of biological
processes,\r\nincluding cancer metastasis. To date, a quantitative understanding
of the interplay of single\r\ncell motility, cell proliferation, and intercellular
contacts remains elusive. In particular, the role\r\nof E- and N-Cadherin junctions,
central components of intercellular contacts, is still\r\ncontroversial. Combining
theoretical modeling with in vitro observations, we investigate the\r\ncollective
spreading behavior of colonies of human cancer cells (T24). The spreading of these\r\ncolonies
is driven by stochastic single-cell migration with frequent transient cell-cell
contacts.\r\nWe find that inhibition of E- and N-Cadherin junctions decreases
colony spreading and average\r\nspreading velocities, without affecting the strength
of correlations in spreading velocities of\r\nneighboring cells. Based on a biophysical
simulation model for cell migration, we show that the\r\nbehavioral changes upon
disruption of these junctions can be explained by reduced repulsive\r\nexcluded
volume interactions between cells. This suggests that in cancer cell migration,\r\ncadherin-based
intercellular contacts sharpen cell boundaries leading to repulsive rather than\r\ncohesive
interactions between cells, thereby promoting efficient cell spreading during
collective\r\nmigration.\r\n"
acknowledgement: Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research
Foundation) - Project-ID 201269156 - SFB 1032 (Projects B8 and B12). D.B.B. is supported
in part by a DFG fellowship within the Graduate School of Quantitative Biosciences
Munich (QBM) and by the Joachim Herz Stiftung.
article_processing_charge: No
article_type: original
author:
- first_name: Themistoklis
full_name: Zisis, Themistoklis
last_name: Zisis
- first_name: David
full_name: Brückner, David
id: e1e86031-6537-11eb-953a-f7ab92be508d
last_name: Brückner
orcid: 0000-0001-7205-2975
- first_name: Tom
full_name: Brandstätter, Tom
last_name: Brandstätter
- first_name: Wei Xiong
full_name: Siow, Wei Xiong
last_name: Siow
- first_name: Joseph
full_name: d’Alessandro, Joseph
last_name: d’Alessandro
- first_name: Angelika M.
full_name: Vollmar, Angelika M.
last_name: Vollmar
- first_name: Chase P.
full_name: Broedersz, Chase P.
last_name: Broedersz
- first_name: Stefan
full_name: Zahler, Stefan
last_name: Zahler
citation:
ama: Zisis T, Brückner D, Brandstätter T, et al. Disentangling cadherin-mediated
cell-cell interactions in collective cancer cell migration. Biophysical Journal.
2022;121(1):P44-60. doi:10.1016/j.bpj.2021.12.006
apa: Zisis, T., Brückner, D., Brandstätter, T., Siow, W. X., d’Alessandro, J., Vollmar,
A. M., … Zahler, S. (2022). Disentangling cadherin-mediated cell-cell interactions
in collective cancer cell migration. Biophysical Journal. Elsevier. https://doi.org/10.1016/j.bpj.2021.12.006
chicago: Zisis, Themistoklis, David Brückner, Tom Brandstätter, Wei Xiong Siow,
Joseph d’Alessandro, Angelika M. Vollmar, Chase P. Broedersz, and Stefan Zahler.
“Disentangling Cadherin-Mediated Cell-Cell Interactions in Collective Cancer Cell
Migration.” Biophysical Journal. Elsevier, 2022. https://doi.org/10.1016/j.bpj.2021.12.006.
ieee: T. Zisis et al., “Disentangling cadherin-mediated cell-cell interactions
in collective cancer cell migration,” Biophysical Journal, vol. 121, no.
1. Elsevier, pp. P44-60, 2022.
ista: Zisis T, Brückner D, Brandstätter T, Siow WX, d’Alessandro J, Vollmar AM,
Broedersz CP, Zahler S. 2022. Disentangling cadherin-mediated cell-cell interactions
in collective cancer cell migration. Biophysical Journal. 121(1), P44-60.
mla: Zisis, Themistoklis, et al. “Disentangling Cadherin-Mediated Cell-Cell Interactions
in Collective Cancer Cell Migration.” Biophysical Journal, vol. 121, no.
1, Elsevier, 2022, pp. P44-60, doi:10.1016/j.bpj.2021.12.006.
short: T. Zisis, D. Brückner, T. Brandstätter, W.X. Siow, J. d’Alessandro, A.M.
Vollmar, C.P. Broedersz, S. Zahler, Biophysical Journal 121 (2022) P44-60.
date_created: 2021-12-10T09:48:19Z
date_published: 2022-01-04T00:00:00Z
date_updated: 2025-06-11T13:59:29Z
day: '04'
ddc:
- '570'
department:
- _id: EdHa
- _id: GaTk
doi: 10.1016/j.bpj.2021.12.006
external_id:
isi:
- '000740815400007'
pmid:
- '34890578'
file:
- access_level: open_access
checksum: 1aa7c3478e0c8256b973b632efd1f6b4
content_type: application/pdf
creator: dernst
date_created: 2022-07-29T10:17:10Z
date_updated: 2022-07-29T10:17:10Z
file_id: '11697'
file_name: 2022_BiophysicalJour_Zisis.pdf
file_size: 4475504
relation: main_file
success: 1
file_date_updated: 2022-07-29T10:17:10Z
has_accepted_license: '1'
intvolume: ' 121'
isi: 1
issue: '1'
keyword:
- Biophysics
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '01'
oa: 1
oa_version: Published Version
page: P44-60
pmid: 1
project:
- _id: 9B861AAC-BA93-11EA-9121-9846C619BF3A
name: NOMIS Fellowship Program
publication: Biophysical Journal
publication_identifier:
issn:
- 0006-3495
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Disentangling cadherin-mediated cell-cell interactions in collective cancer
cell migration
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 121
year: '2022'
...
---
_id: '10537'
abstract:
- lang: eng
text: We consider the quantum many-body evolution of a homogeneous Fermi gas in
three dimensions in the coupled semiclassical and mean-field scaling regime. We
study a class of initial data describing collective particle–hole pair excitations
on the Fermi ball. Using a rigorous version of approximate bosonization, we prove
that the many-body evolution can be approximated in Fock space norm by a quasi-free
bosonic evolution of the collective particle–hole excitations.
acknowledgement: NB was supported by Gruppo Nazionale per la Fisica Matematica (GNFM).
RS was supported by the European Research Council (ERC) under the European Union’s
Horizon 2020 research and innovation program (Grant Agreement No. 694227). PTN was
supported by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)
under Germany’s Excellence Strategy (EXC-2111-390814868). MP was supported by the
European Research Council (ERC) under the European Union’s Horizon 2020 research
and innovation program (ERC StG MaMBoQ, Grant Agreement No. 802901). BS was supported
by the NCCR SwissMAP, the Swiss National Science Foundation through the Grant “Dynamical
and energetic properties of Bose-Einstein condensates,” and the European Research
Council (ERC) under the European Union’s Horizon 2020 research and innovation program
through the ERC-AdG CLaQS (Grant Agreement No. 834782).
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Niels P
full_name: Benedikter, Niels P
id: 3DE6C32A-F248-11E8-B48F-1D18A9856A87
last_name: Benedikter
orcid: 0000-0002-1071-6091
- first_name: Phan Thành
full_name: Nam, Phan Thành
last_name: Nam
- first_name: Marcello
full_name: Porta, Marcello
last_name: Porta
- first_name: Benjamin
full_name: Schlein, Benjamin
last_name: Schlein
- first_name: Robert
full_name: Seiringer, Robert
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Benedikter NP, Nam PT, Porta M, Schlein B, Seiringer R. Bosonization of fermionic
many-body dynamics. Annales Henri Poincaré. 2022;23(5):1725-1764. doi:10.1007/s00023-021-01136-y
apa: Benedikter, N. P., Nam, P. T., Porta, M., Schlein, B., & Seiringer, R.
(2022). Bosonization of fermionic many-body dynamics. Annales Henri Poincaré.
Springer Nature. https://doi.org/10.1007/s00023-021-01136-y
chicago: Benedikter, Niels P, Phan Thành Nam, Marcello Porta, Benjamin Schlein,
and Robert Seiringer. “Bosonization of Fermionic Many-Body Dynamics.” Annales
Henri Poincaré. Springer Nature, 2022. https://doi.org/10.1007/s00023-021-01136-y.
ieee: N. P. Benedikter, P. T. Nam, M. Porta, B. Schlein, and R. Seiringer, “Bosonization
of fermionic many-body dynamics,” Annales Henri Poincaré, vol. 23, no.
5. Springer Nature, pp. 1725–1764, 2022.
ista: Benedikter NP, Nam PT, Porta M, Schlein B, Seiringer R. 2022. Bosonization
of fermionic many-body dynamics. Annales Henri Poincaré. 23(5), 1725–1764.
mla: Benedikter, Niels P., et al. “Bosonization of Fermionic Many-Body Dynamics.”
Annales Henri Poincaré, vol. 23, no. 5, Springer Nature, 2022, pp. 1725–64,
doi:10.1007/s00023-021-01136-y.
short: N.P. Benedikter, P.T. Nam, M. Porta, B. Schlein, R. Seiringer, Annales Henri
Poincaré 23 (2022) 1725–1764.
date_created: 2021-12-12T23:01:28Z
date_published: 2022-05-01T00:00:00Z
date_updated: 2025-04-14T07:26:53Z
day: '01'
department:
- _id: RoSe
doi: 10.1007/s00023-021-01136-y
ec_funded: 1
external_id:
arxiv:
- '2103.08224'
isi:
- '000725405700001'
intvolume: ' 23'
isi: 1
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2103.08224
month: '05'
oa: 1
oa_version: Preprint
page: 1725-1764
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '694227'
name: Analysis of quantum many-body systems
publication: Annales Henri Poincaré
publication_identifier:
issn:
- 1424-0637
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Bosonization of fermionic many-body dynamics
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 23
year: '2022'
...
---
_id: '10547'
abstract:
- lang: eng
text: "We establish global-in-time existence results for thermodynamically consistent
reaction-(cross-)diffusion systems coupled to an equation describing heat transfer.
Our main interest is to model species-dependent diffusivities,\r\nwhile at the
same time ensuring thermodynamic consistency. A key difficulty of the non-isothermal
case lies in the intrinsic presence of cross-diffusion type phenomena like the
Soret and the Dufour effect: due to the temperature/energy dependence of the thermodynamic
equilibria, a nonvanishing temperature gradient may drive a concentration flux
even in a situation with constant concentrations; likewise, a nonvanishing concentration
gradient may drive a heat flux even in a case of spatially constant temperature.
We use time discretisation and regularisation techniques and derive a priori estimates
based on a suitable entropy and the associated entropy production. Renormalised
solutions are used in cases where non-integrable diffusion fluxes or reaction
terms appear."
acknowledgement: M.K. gratefully acknowledges the hospitality of WIAS Berlin, where
a major part of the project was carried out. The research stay of M.K. at WIAS Berlin
was funded by the Austrian Federal Ministry of Education, Science and Research through
a research fellowship for graduates of a promotio sub auspiciis. The research of
A.M. has been partially supported by Deutsche Forschungsgemeinschaft (DFG) through
the Collaborative Research Center SFB 1114 “Scaling Cascades in Complex Systems”
(Project no. 235221301), Subproject C05 “Effective models for materials and interfaces
with multiple scales”. J.F. and A.M. are grateful for the hospitality of the Erwin
Schrödinger Institute in Vienna, where some ideas for this work have been developed.
The authors are grateful to two anonymous referees for several helpful comments,
in particular for the short proof of estimate (2.7).
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Julian L
full_name: Fischer, Julian L
id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87
last_name: Fischer
orcid: 0000-0002-0479-558X
- first_name: Katharina
full_name: Hopf, Katharina
last_name: Hopf
- first_name: Michael
full_name: Kniely, Michael
id: 2CA2C08C-F248-11E8-B48F-1D18A9856A87
last_name: Kniely
orcid: 0000-0001-5645-4333
- first_name: Alexander
full_name: Mielke, Alexander
last_name: Mielke
citation:
ama: Fischer JL, Hopf K, Kniely M, Mielke A. Global existence analysis of energy-reaction-diffusion
systems. SIAM Journal on Mathematical Analysis. 2022;54(1):220-267. doi:10.1137/20M1387237
apa: Fischer, J. L., Hopf, K., Kniely, M., & Mielke, A. (2022). Global existence
analysis of energy-reaction-diffusion systems. SIAM Journal on Mathematical
Analysis. Society for Industrial and Applied Mathematics. https://doi.org/10.1137/20M1387237
chicago: Fischer, Julian L, Katharina Hopf, Michael Kniely, and Alexander Mielke.
“Global Existence Analysis of Energy-Reaction-Diffusion Systems.” SIAM Journal
on Mathematical Analysis. Society for Industrial and Applied Mathematics,
2022. https://doi.org/10.1137/20M1387237.
ieee: J. L. Fischer, K. Hopf, M. Kniely, and A. Mielke, “Global existence analysis
of energy-reaction-diffusion systems,” SIAM Journal on Mathematical Analysis,
vol. 54, no. 1. Society for Industrial and Applied Mathematics, pp. 220–267, 2022.
ista: Fischer JL, Hopf K, Kniely M, Mielke A. 2022. Global existence analysis of
energy-reaction-diffusion systems. SIAM Journal on Mathematical Analysis. 54(1),
220–267.
mla: Fischer, Julian L., et al. “Global Existence Analysis of Energy-Reaction-Diffusion
Systems.” SIAM Journal on Mathematical Analysis, vol. 54, no. 1, Society
for Industrial and Applied Mathematics, 2022, pp. 220–67, doi:10.1137/20M1387237.
short: J.L. Fischer, K. Hopf, M. Kniely, A. Mielke, SIAM Journal on Mathematical
Analysis 54 (2022) 220–267.
date_created: 2021-12-16T12:08:56Z
date_published: 2022-01-04T00:00:00Z
date_updated: 2023-08-02T13:37:03Z
day: '04'
department:
- _id: JuFi
doi: 10.1137/20M1387237
external_id:
arxiv:
- '2012.03792 '
isi:
- '000762768000006'
intvolume: ' 54'
isi: 1
issue: '1'
keyword:
- Energy-Reaction-Diffusion Systems
- Cross Diffusion
- Global-In-Time Existence of Weak/Renormalised Solutions
- Entropy Method
- Onsager System
- Soret/Dufour Effect
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2012.03792
month: '01'
oa: 1
oa_version: Preprint
page: 220-267
publication: SIAM Journal on Mathematical Analysis
publication_identifier:
issn:
- 0036-1410
publication_status: published
publisher: Society for Industrial and Applied Mathematics
quality_controlled: '1'
scopus_import: '1'
status: public
title: Global existence analysis of energy-reaction-diffusion systems
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 54
year: '2022'
...
---
_id: '10548'
abstract:
- lang: eng
text: "Consider a linear elliptic partial differential equation in divergence form
with a random coefficient field. The solution operator displays fluctuations around
its expectation. The recently developed pathwise theory of fluctuations in stochastic
homogenization reduces the characterization of these fluctuations to those of
the so-called standard homogenization commutator. In this contribution, we investigate
the scaling limit of this key quantity: starting\r\nfrom a Gaussian-like coefficient
field with possibly strong correlations, we establish the convergence of the rescaled
commutator to a fractional Gaussian field, depending on the decay of correlations
of the coefficient field, and we\r\ninvestigate the (non)degeneracy of the limit.
This extends to general dimension $d\\ge1$ previous results so far limited to
dimension $d=1$, and to the continuum setting with strong correlations recent
results in the discrete iid case."
acknowledgement: The authors thank Ivan Nourdin and Felix Otto for inspiring discussions.
The work of MD is financially supported by the CNRS-Momentum program. Financial
support of AG is acknowledged from the European Research Council under the European
Community’s Seventh Framework Programme (FP7/2014-2019 Grant Agreement QUANTHOM
335410).
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Mitia
full_name: Duerinckx, Mitia
last_name: Duerinckx
- first_name: Julian L
full_name: Fischer, Julian L
id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87
last_name: Fischer
orcid: 0000-0002-0479-558X
- first_name: Antoine
full_name: Gloria, Antoine
last_name: Gloria
citation:
ama: Duerinckx M, Fischer JL, Gloria A. Scaling limit of the homogenization commutator
for Gaussian coefficient fields. Annals of applied probability. 2022;32(2):1179-1209.
doi:10.1214/21-AAP1705
apa: Duerinckx, M., Fischer, J. L., & Gloria, A. (2022). Scaling limit of the
homogenization commutator for Gaussian coefficient fields. Annals of Applied
Probability. Institute of Mathematical Statistics. https://doi.org/10.1214/21-AAP1705
chicago: Duerinckx, Mitia, Julian L Fischer, and Antoine Gloria. “Scaling Limit
of the Homogenization Commutator for Gaussian Coefficient Fields.” Annals
of Applied Probability. Institute of Mathematical Statistics, 2022. https://doi.org/10.1214/21-AAP1705.
ieee: M. Duerinckx, J. L. Fischer, and A. Gloria, “Scaling limit of the homogenization
commutator for Gaussian coefficient fields,” Annals of applied probability,
vol. 32, no. 2. Institute of Mathematical Statistics, pp. 1179–1209, 2022.
ista: Duerinckx M, Fischer JL, Gloria A. 2022. Scaling limit of the homogenization
commutator for Gaussian coefficient fields. Annals of applied probability. 32(2),
1179–1209.
mla: Duerinckx, Mitia, et al. “Scaling Limit of the Homogenization Commutator for
Gaussian Coefficient Fields.” Annals of Applied Probability, vol. 32,
no. 2, Institute of Mathematical Statistics, 2022, pp. 1179–209, doi:10.1214/21-AAP1705.
short: M. Duerinckx, J.L. Fischer, A. Gloria, Annals of Applied Probability 32 (2022)
1179–1209.
corr_author: '1'
date_created: 2021-12-16T12:10:16Z
date_published: 2022-04-28T00:00:00Z
date_updated: 2024-10-09T21:01:17Z
day: '28'
department:
- _id: JuFi
doi: 10.1214/21-AAP1705
external_id:
arxiv:
- '1910.04088'
isi:
- '000791003700011'
intvolume: ' 32'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1910.04088
month: '04'
oa: 1
oa_version: Preprint
page: 1179-1209
publication: Annals of applied probability
publication_identifier:
issn:
- 1050-5164
publication_status: published
publisher: Institute of Mathematical Statistics
quality_controlled: '1'
scopus_import: '1'
status: public
title: Scaling limit of the homogenization commutator for Gaussian coefficient fields
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 32
year: '2022'
...
---
_id: '17057'
abstract:
- lang: eng
text: Martin Loose studied chemistry at the University of Heidelberg, Germany. He
then joined Petra Schwille's group at the Max Planck Institute of Molecular Cell
Biology and Genetics in Dresden, where he obtained his PhD degree in 2010 for
work on self-organization and pattern formation in the bacterial Min protein system.
He then moved to Tim Mitchison's lab at Harvard Medical School, Boston, USA for
his postdoc, funded by Human Frontier Science Program (HSFP) and European Molecular
Biology Organization (EMBO) long-term fellowships; there, he discovered that the
bacterial cell division proteins FtsA and FtsZ self-organize into dynamic cytoskeletal
patterns. Martin established his independent research group at the Institute of
Science and Technology (IST) Austria in 2015, supported by an European Research
Council (ERC) starting grant and HFSP Young Investigator Grant. His lab studies
the self-organization of bacterial cell division and small GTPase networks.
article_number: jcs259715
article_processing_charge: No
author:
- first_name: Martin
full_name: Loose, Martin
id: 462D4284-F248-11E8-B48F-1D18A9856A87
last_name: Loose
orcid: 0000-0001-7309-9724
citation:
ama: Loose M. Cell Scientist to Watch – Martin Loose. Vol 135. The Company
of Biologists; 2022. doi:10.1242/jcs.259715
apa: Loose, M. (2022). Cell scientist to watch – Martin Loose. Journal
of Cell Science (Vol. 135). The Company of Biologists. https://doi.org/10.1242/jcs.259715
chicago: Loose, Martin. Cell Scientist to Watch – Martin Loose. Journal
of Cell Science. Vol. 135. The Company of Biologists, 2022. https://doi.org/10.1242/jcs.259715.
ieee: M. Loose, Cell scientist to watch – Martin Loose, vol. 135, no. 2.
The Company of Biologists, 2022.
ista: Loose M. 2022. Cell scientist to watch – Martin Loose, The Company of Biologists,p.
mla: Loose, Martin. “Cell Scientist to Watch – Martin Loose.” Journal of Cell
Science, vol. 135, no. 2, jcs259715, The Company of Biologists, 2022, doi:10.1242/jcs.259715.
short: M. Loose, Cell Scientist to Watch – Martin Loose, The Company of Biologists,
2022.
date_created: 2024-05-28T13:28:30Z
date_published: 2022-01-19T00:00:00Z
date_updated: 2024-06-04T09:51:20Z
day: '19'
department:
- _id: MaLo
doi: 10.1242/jcs.259715
external_id:
isi:
- '000762665200015'
intvolume: ' 135'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1242/jcs.259715
month: '01'
oa: 1
oa_version: Published Version
publication: Journal of Cell Science
publication_identifier:
eissn:
- 1477-9137
issn:
- 0021-9533
publication_status: published
publisher: The Company of Biologists
quality_controlled: '1'
status: public
title: Cell scientist to watch – Martin Loose
type: other_academic_publication
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 135
year: '2022'
...
---
_id: '17058'
abstract:
- lang: eng
text: We compare the Manin-type conjecture for Campana points recently formulated
by Pieropan, Smeets, Tanimoto and Várilly-Alvarado with an alternative prediction
of Browning and Van Valckenborgh in the special case of the orbifold (P1,D), where
D=1/2[0]+1/2[1]+1/2[∞]. We find that the two predicted leading constants do not
agree, and we discuss whether thin sets could explain this discrepancy. Motivated
by this, we provide a counterexample to the Manin-type conjecture for Campana
points, by considering orbifolds corresponding to squareful values of binary quadratic
forms.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Alec L
full_name: Shute, Alec L
id: 440EB050-F248-11E8-B48F-1D18A9856A87
last_name: Shute
orcid: 0000-0002-1812-2810
citation:
ama: Shute AL. On the leading constant in the Manin-type conjecture for Campana
points. Acta Arithmetica. 2022;204(4):317-346. doi:10.4064/aa210430-1-7
apa: Shute, A. L. (2022). On the leading constant in the Manin-type conjecture for
Campana points. Acta Arithmetica. Institute of Mathematics. https://doi.org/10.4064/aa210430-1-7
chicago: Shute, Alec L. “On the Leading Constant in the Manin-Type Conjecture for
Campana Points.” Acta Arithmetica. Institute of Mathematics, 2022. https://doi.org/10.4064/aa210430-1-7.
ieee: A. L. Shute, “On the leading constant in the Manin-type conjecture for Campana
points,” Acta Arithmetica, vol. 204, no. 4. Institute of Mathematics, pp.
317–346, 2022.
ista: Shute AL. 2022. On the leading constant in the Manin-type conjecture for Campana
points. Acta Arithmetica. 204(4), 317–346.
mla: Shute, Alec L. “On the Leading Constant in the Manin-Type Conjecture for Campana
Points.” Acta Arithmetica, vol. 204, no. 4, Institute of Mathematics, 2022,
pp. 317–46, doi:10.4064/aa210430-1-7.
short: A.L. Shute, Acta Arithmetica 204 (2022) 317–346.
corr_author: '1'
date_created: 2024-05-28T13:39:26Z
date_published: 2022-08-22T00:00:00Z
date_updated: 2025-09-10T09:57:03Z
day: '22'
department:
- _id: TiBr
doi: 10.4064/aa210430-1-7
external_id:
arxiv:
- '2104.14946'
isi:
- '000844789100001'
intvolume: ' 204'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2104.14946
month: '08'
oa: 1
oa_version: Preprint
page: 317-346
publication: Acta Arithmetica
publication_identifier:
eissn:
- 1730-6264
issn:
- 0065-1036
publication_status: published
publisher: Institute of Mathematics
quality_controlled: '1'
related_material:
record:
- id: '12077'
relation: earlier_version
status: public
scopus_import: '1'
status: public
title: On the leading constant in the Manin-type conjecture for Campana points
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 204
year: '2022'
...
---
_id: '17059'
abstract:
- lang: eng
text: The recent focus on the efficiency of deep neural networks (DNNs) has led
to significant work on model compression approaches, of which weight pruning is
one of the most popular. At the same time, there is rapidly-growing computational
support for efficiently executing the unstructured-sparse models obtained via
pruning. Yet, most existing pruning methods minimize just the number of remaining
weights, i.e. the size of the model, rather than optimizing for inference time.
We address this gap by introducing SPDY, a new compression method which automatically
determines layer-wise sparsity targets achieving a desired inference speedup on
a given system, while minimizing accuracy loss. SPDY is the composition of two
new techniques. The first is an efficient and general dynamic programming algorithm
for solving constrained layer-wise compression problems, given a set of layer-wise
error scores. The second technique is a local search procedure for automatically
determining such scores in an accurate and robust manner. Experiments across popular
vision and language models show that SPDY guarantees speedups while recovering
higher accuracy relative to existing strategies, both for one-shot and gradual
pruning scenarios, and is compatible with most existing pruning approaches. We
also extend our approach to the recently-proposed task of pruning with very little
data, where we achieve the best known accuracy recovery when pruning to the GPU-supported
2:4 sparsity pattern.
acknowledgement: "We gratefully acknowledge funding from the European Research Council
(ERC) under the European Union’s Horizon 2020 programme (grant agreement No 805223
ScaleML),\r\nas well as computational support from AWS EC2. We thank Eldar Kurtic
for code and hyper-parameters for BERT pruning, and the Neural Magic Team, notably
Michael Goin and\r\nMark Kurtz, for support with their software."
alternative_title:
- PMLR
article_processing_charge: Yes
author:
- first_name: Elias
full_name: Frantar, Elias
id: 09a8f98d-ec99-11ea-ae11-c063a7b7fe5f
last_name: Frantar
- first_name: Dan-Adrian
full_name: Alistarh, Dan-Adrian
id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
last_name: Alistarh
orcid: 0000-0003-3650-940X
citation:
ama: 'Frantar E, Alistarh D-A. SPDY: Accurate pruning with speedup guarantees. In:
39th International Conference on Machine Learning. Vol 162. ML Research
Press; 2022:6726-6743.'
apa: 'Frantar, E., & Alistarh, D.-A. (2022). SPDY: Accurate pruning with speedup
guarantees. In 39th International Conference on Machine Learning (Vol.
162, pp. 6726–6743). Baltimore, MD, United States: ML Research Press.'
chicago: 'Frantar, Elias, and Dan-Adrian Alistarh. “SPDY: Accurate Pruning with
Speedup Guarantees.” In 39th International Conference on Machine Learning,
162:6726–43. ML Research Press, 2022.'
ieee: 'E. Frantar and D.-A. Alistarh, “SPDY: Accurate pruning with speedup guarantees,”
in 39th International Conference on Machine Learning, Baltimore, MD, United
States, 2022, vol. 162, pp. 6726–6743.'
ista: 'Frantar E, Alistarh D-A. 2022. SPDY: Accurate pruning with speedup guarantees.
39th International Conference on Machine Learning. ICML: International Conference
on Machine Learning, PMLR, vol. 162, 6726–6743.'
mla: 'Frantar, Elias, and Dan-Adrian Alistarh. “SPDY: Accurate Pruning with Speedup
Guarantees.” 39th International Conference on Machine Learning, vol. 162,
ML Research Press, 2022, pp. 6726–43.'
short: E. Frantar, D.-A. Alistarh, in:, 39th International Conference on Machine
Learning, ML Research Press, 2022, pp. 6726–6743.
conference:
end_date: 2022-07-23
location: Baltimore, MD, United States
name: 'ICML: International Conference on Machine Learning'
start_date: 2022-07-17
corr_author: '1'
date_created: 2024-05-28T13:45:20Z
date_published: 2022-07-20T00:00:00Z
date_updated: 2025-04-14T07:49:14Z
day: '20'
ddc:
- '000'
department:
- _id: DaAl
ec_funded: 1
external_id:
isi:
- '000922378801029'
file:
- access_level: open_access
checksum: 5179a1e4dfc0fbfab6674907299e414a
content_type: application/pdf
creator: dernst
date_created: 2024-08-19T06:54:41Z
date_updated: 2024-08-19T06:54:41Z
file_id: '17440'
file_name: 2022_PMLR_Frantar.pdf
file_size: 615916
relation: main_file
success: 1
file_date_updated: 2024-08-19T06:54:41Z
has_accepted_license: '1'
intvolume: ' 162'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 6726-6743
project:
- _id: 268A44D6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '805223'
name: Elastic Coordination for Scalable Machine Learning
publication: 39th International Conference on Machine Learning
publication_status: published
publisher: ML Research Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'SPDY: Accurate pruning with speedup guarantees'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 162
year: '2022'
...
---
_id: '17060'
abstract:
- lang: eng
text: "Payment channel networks (PCNs) are one of the most prominent solutions to
the limited transaction throughput of blockchains. Nevertheless, PCNs suffer themselves
from a throughput limitation due to the capital constraints of their channels.
A similar dependence on high capital is also found in inter-bank payment settlements,
where the so-called netting technique is used to mitigate liquidity demands.\r\nIn
this work, we alleviate this limitation by introducing the notion of transaction
aggregation: instead of executing transactions sequentially through a PCN, we
enable senders to aggregate multiple transactions and execute them simultaneously
to benefit from several amounts that may \"cancel out\". Two direct advantages
of our proposal is the decrease in intermediary fees paid by senders as well as
the obfuscation of the transaction data from the intermediaries.\r\nWe formulate
the transaction aggregation as a computational problem, a generalization of the
Bank Clearing Problem. We present a generic framework for the transaction aggregation
execution, and thereafter we propose Wiser as an implementation of this framework
in a specific hub-based setting. To overcome the NP-hardness of the transaction
aggregation problem, in Wiser we propose a fixed-parameter linear algorithm for
a special case of transaction aggregation as well as the Bank Clearing Problem.
Wiser can also be seen as a modern variant of the Hawala money transfer system,
as well as a decentralized implementation of the overseas remittance service of
Wise."
acknowledgement: "This work was supported partially by ERC Starting Grant QIP–805241,
by the Vienna business agency (Wirtschaftsagentur) through the Vienna Cybersecurity
and Privacy Research Center\r\n(ViSP) and by the Austrian Science Fund (FWF) project
I 4800-N (ADVISE).\r\nThe first author would like to thank Daniel Dadush for suggesting
the use of discrepancy techniques to solve the transaction aggregation problem."
article_processing_charge: Yes (in subscription journal)
arxiv: 1
author:
- first_name: Samarth
full_name: Tiwari, Samarth
last_name: Tiwari
- first_name: Michelle X
full_name: Yeo, Michelle X
id: 2D82B818-F248-11E8-B48F-1D18A9856A87
last_name: Yeo
orcid: 0009-0001-3676-4809
- first_name: Zeta
full_name: Avarikioti, Zeta
last_name: Avarikioti
- first_name: Iosif
full_name: Salem, Iosif
last_name: Salem
- first_name: Krzysztof Z
full_name: Pietrzak, Krzysztof Z
id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
last_name: Pietrzak
orcid: 0000-0002-9139-1654
- first_name: Stefan
full_name: Schmid, Stefan
last_name: Schmid
citation:
ama: 'Tiwari S, Yeo MX, Avarikioti Z, Salem I, Pietrzak KZ, Schmid S. Wiser: Increasing
throughput in payment channel networks with transaction aggregation. In: Proceedings
of the 4th ACM Conference on Advances in Financial Technologies. Association
for Computing Machinery; 2022:217-231. doi:10.1145/3558535.3559775'
apa: 'Tiwari, S., Yeo, M. X., Avarikioti, Z., Salem, I., Pietrzak, K. Z., &
Schmid, S. (2022). Wiser: Increasing throughput in payment channel networks with
transaction aggregation. In Proceedings of the 4th ACM Conference on Advances
in Financial Technologies (pp. 217–231). Cambridge, MA, United States: Association
for Computing Machinery. https://doi.org/10.1145/3558535.3559775'
chicago: 'Tiwari, Samarth, Michelle X Yeo, Zeta Avarikioti, Iosif Salem, Krzysztof
Z Pietrzak, and Stefan Schmid. “Wiser: Increasing Throughput in Payment Channel
Networks with Transaction Aggregation.” In Proceedings of the 4th ACM Conference
on Advances in Financial Technologies, 217–31. Association for Computing Machinery,
2022. https://doi.org/10.1145/3558535.3559775.'
ieee: 'S. Tiwari, M. X. Yeo, Z. Avarikioti, I. Salem, K. Z. Pietrzak, and S. Schmid,
“Wiser: Increasing throughput in payment channel networks with transaction aggregation,”
in Proceedings of the 4th ACM Conference on Advances in Financial Technologies,
Cambridge, MA, United States, 2022, pp. 217–231.'
ista: 'Tiwari S, Yeo MX, Avarikioti Z, Salem I, Pietrzak KZ, Schmid S. 2022. Wiser:
Increasing throughput in payment channel networks with transaction aggregation.
Proceedings of the 4th ACM Conference on Advances in Financial Technologies. AFT:
Conference on Advances in Financial Technologies, 217–231.'
mla: 'Tiwari, Samarth, et al. “Wiser: Increasing Throughput in Payment Channel Networks
with Transaction Aggregation.” Proceedings of the 4th ACM Conference on Advances
in Financial Technologies, Association for Computing Machinery, 2022, pp.
217–31, doi:10.1145/3558535.3559775.'
short: S. Tiwari, M.X. Yeo, Z. Avarikioti, I. Salem, K.Z. Pietrzak, S. Schmid, in:,
Proceedings of the 4th ACM Conference on Advances in Financial Technologies, Association
for Computing Machinery, 2022, pp. 217–231.
conference:
end_date: 2022-09-21
location: Cambridge, MA, United States
name: 'AFT: Conference on Advances in Financial Technologies'
start_date: 2022-09-19
date_created: 2024-05-28T13:58:35Z
date_published: 2022-09-19T00:00:00Z
date_updated: 2025-09-10T09:57:48Z
day: '19'
ddc:
- '000'
department:
- _id: KrPi
doi: 10.1145/3558535.3559775
external_id:
arxiv:
- '2205.11597'
isi:
- '001041852800015'
file:
- access_level: open_access
checksum: 54a7d405f8e57dba24728599ca63818c
content_type: application/pdf
creator: dernst
date_created: 2024-08-19T06:45:21Z
date_updated: 2024-08-19T06:45:21Z
file_id: '17439'
file_name: 2022_AFT_Tiwari.pdf
file_size: 574728
relation: main_file
success: 1
file_date_updated: 2024-08-19T06:45:21Z
has_accepted_license: '1'
isi: 1
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 217-231
publication: Proceedings of the 4th ACM Conference on Advances in Financial Technologies
publication_identifier:
isbn:
- '9781450398619'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Wiser: Increasing throughput in payment channel networks with transaction
aggregation'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
year: '2022'
...