--- _id: '14800' abstract: - lang: eng text: 'Research on two-dimensional (2D) materials has been explosively increasing in last seventeen years in varying subjects including condensed matter physics, electronic engineering, materials science, and chemistry since the mechanical exfoliation of graphene in 2004. Starting from graphene, 2D materials now have become a big family with numerous members and diverse categories. The unique structural features and physicochemical properties of 2D materials make them one class of the most appealing candidates for a wide range of potential applications. In particular, we have seen some major breakthroughs made in the field of 2D materials in last five years not only in developing novel synthetic methods and exploring new structures/properties but also in identifying innovative applications and pushing forward commercialisation. In this review, we provide a critical summary on the recent progress made in the field of 2D materials with a particular focus on last five years. After a brief background introduction, we first discuss the major synthetic methods for 2D materials, including the mechanical exfoliation, liquid exfoliation, vapor phase deposition, and wet-chemical synthesis as well as phase engineering of 2D materials belonging to the field of phase engineering of nanomaterials (PEN). We then introduce the superconducting/optical/magnetic properties and chirality of 2D materials along with newly emerging magic angle 2D superlattices. Following that, the promising applications of 2D materials in electronics, optoelectronics, catalysis, energy storage, solar cells, biomedicine, sensors, environments, etc. are described sequentially. Thereafter, we present the theoretic calculations and simulations of 2D materials. Finally, after concluding the current progress, we provide some personal discussions on the existing challenges and future outlooks in this rapidly developing field. ' article_number: '2108017' article_processing_charge: No article_type: review author: - first_name: Cheng full_name: Chang, Cheng id: 9E331C2E-9F27-11E9-AE48-5033E6697425 last_name: Chang orcid: 0000-0002-9515-4277 - first_name: Wei full_name: Chen, Wei last_name: Chen - first_name: Ye full_name: Chen, Ye last_name: Chen - first_name: Yonghua full_name: Chen, Yonghua last_name: Chen - first_name: Yu full_name: Chen, Yu last_name: Chen - first_name: Feng full_name: Ding, Feng last_name: Ding - first_name: Chunhai full_name: Fan, Chunhai last_name: Fan - first_name: Hong Jin full_name: Fan, Hong Jin last_name: Fan - first_name: Zhanxi full_name: Fan, Zhanxi last_name: Fan - first_name: Cheng full_name: Gong, Cheng last_name: Gong - first_name: Yongji full_name: Gong, Yongji last_name: Gong - first_name: Qiyuan full_name: He, Qiyuan last_name: He - first_name: Xun full_name: Hong, Xun last_name: Hong - first_name: Sheng full_name: Hu, Sheng last_name: Hu - first_name: Weida full_name: Hu, Weida last_name: Hu - first_name: Wei full_name: Huang, Wei last_name: Huang - first_name: Yuan full_name: Huang, Yuan last_name: Huang - first_name: Wei full_name: Ji, Wei last_name: Ji - first_name: Dehui full_name: Li, Dehui last_name: Li - first_name: Lain Jong full_name: Li, Lain Jong last_name: Li - first_name: Qiang full_name: Li, Qiang last_name: Li - first_name: Li full_name: Lin, Li last_name: Lin - first_name: Chongyi full_name: Ling, Chongyi last_name: Ling - first_name: Minghua full_name: Liu, Minghua last_name: Liu - first_name: 'Nan' full_name: Liu, Nan last_name: Liu - first_name: Zhuang full_name: Liu, Zhuang last_name: Liu - first_name: Kian Ping full_name: Loh, Kian Ping last_name: Loh - first_name: Jianmin full_name: Ma, Jianmin last_name: Ma - first_name: Feng full_name: Miao, Feng last_name: Miao - first_name: Hailin full_name: Peng, Hailin last_name: Peng - first_name: Mingfei full_name: Shao, Mingfei last_name: Shao - first_name: Li full_name: Song, Li last_name: Song - first_name: Shao full_name: Su, Shao last_name: Su - first_name: Shuo full_name: Sun, Shuo last_name: Sun - first_name: Chaoliang full_name: Tan, Chaoliang last_name: Tan - first_name: Zhiyong full_name: Tang, Zhiyong last_name: Tang - first_name: Dingsheng full_name: Wang, Dingsheng last_name: Wang - first_name: Huan full_name: Wang, Huan last_name: Wang - first_name: Jinlan full_name: Wang, Jinlan last_name: Wang - first_name: Xin full_name: Wang, Xin last_name: Wang - first_name: Xinran full_name: Wang, Xinran last_name: Wang - first_name: Andrew T.S. full_name: Wee, Andrew T.S. last_name: Wee - first_name: Zhongming full_name: Wei, Zhongming last_name: Wei - first_name: Yuen full_name: Wu, Yuen last_name: Wu - first_name: Zhong Shuai full_name: Wu, Zhong Shuai last_name: Wu - first_name: Jie full_name: Xiong, Jie last_name: Xiong - first_name: Qihua full_name: Xiong, Qihua last_name: Xiong - first_name: Weigao full_name: Xu, Weigao last_name: Xu - first_name: Peng full_name: Yin, Peng last_name: Yin - first_name: Haibo full_name: Zeng, Haibo last_name: Zeng - first_name: Zhiyuan full_name: Zeng, Zhiyuan last_name: Zeng - first_name: Tianyou full_name: Zhai, Tianyou last_name: Zhai - first_name: Han full_name: Zhang, Han last_name: Zhang - first_name: Hui full_name: Zhang, Hui last_name: Zhang - first_name: Qichun full_name: Zhang, Qichun last_name: Zhang - first_name: Tierui full_name: Zhang, Tierui last_name: Zhang - first_name: Xiang full_name: Zhang, Xiang last_name: Zhang - first_name: Li Dong full_name: Zhao, Li Dong last_name: Zhao - first_name: Meiting full_name: Zhao, Meiting last_name: Zhao - first_name: Weijie full_name: Zhao, Weijie last_name: Zhao - first_name: Yunxuan full_name: Zhao, Yunxuan last_name: Zhao - first_name: Kai Ge full_name: Zhou, Kai Ge last_name: Zhou - first_name: Xing full_name: Zhou, Xing last_name: Zhou - first_name: Yu full_name: Zhou, Yu last_name: Zhou - first_name: Hongwei full_name: Zhu, Hongwei last_name: Zhu - first_name: Hua full_name: Zhang, Hua last_name: Zhang - first_name: Zhongfan full_name: Liu, Zhongfan last_name: Liu citation: ama: Chang C, Chen W, Chen Y, et al. Recent progress on two-dimensional materials. Acta Physico-Chimica Sinica. 2021;37(12). doi:10.3866/PKU.WHXB202108017 apa: Chang, C., Chen, W., Chen, Y., Chen, Y., Chen, Y., Ding, F., … Liu, Z. (2021). Recent progress on two-dimensional materials. Acta Physico-Chimica Sinica. Peking University. https://doi.org/10.3866/PKU.WHXB202108017 chicago: Chang, Cheng, Wei Chen, Ye Chen, Yonghua Chen, Yu Chen, Feng Ding, Chunhai Fan, et al. “Recent Progress on Two-Dimensional Materials.” Acta Physico-Chimica Sinica. Peking University, 2021. https://doi.org/10.3866/PKU.WHXB202108017. ieee: C. Chang et al., “Recent progress on two-dimensional materials,” Acta Physico-Chimica Sinica, vol. 37, no. 12. Peking University, 2021. ista: Chang C, Chen W, Chen Y, Chen Y, Chen Y, Ding F, Fan C, Fan HJ, Fan Z, Gong C, Gong Y, He Q, Hong X, Hu S, Hu W, Huang W, Huang Y, Ji W, Li D, Li LJ, Li Q, Lin L, Ling C, Liu M, Liu N, Liu Z, Loh KP, Ma J, Miao F, Peng H, Shao M, Song L, Su S, Sun S, Tan C, Tang Z, Wang D, Wang H, Wang J, Wang X, Wang X, Wee ATS, Wei Z, Wu Y, Wu ZS, Xiong J, Xiong Q, Xu W, Yin P, Zeng H, Zeng Z, Zhai T, Zhang H, Zhang H, Zhang Q, Zhang T, Zhang X, Zhao LD, Zhao M, Zhao W, Zhao Y, Zhou KG, Zhou X, Zhou Y, Zhu H, Zhang H, Liu Z. 2021. Recent progress on two-dimensional materials. Acta Physico-Chimica Sinica. 37(12), 2108017. mla: Chang, Cheng, et al. “Recent Progress on Two-Dimensional Materials.” Acta Physico-Chimica Sinica, vol. 37, no. 12, 2108017, Peking University, 2021, doi:10.3866/PKU.WHXB202108017. short: C. Chang, W. Chen, Y. Chen, Y. Chen, Y. Chen, F. Ding, C. Fan, H.J. Fan, Z. Fan, C. Gong, Y. Gong, Q. He, X. Hong, S. Hu, W. Hu, W. Huang, Y. Huang, W. Ji, D. Li, L.J. Li, Q. Li, L. Lin, C. Ling, M. Liu, N. Liu, Z. Liu, K.P. Loh, J. Ma, F. Miao, H. Peng, M. Shao, L. Song, S. Su, S. Sun, C. Tan, Z. Tang, D. Wang, H. Wang, J. Wang, X. Wang, X. Wang, A.T.S. Wee, Z. Wei, Y. Wu, Z.S. Wu, J. Xiong, Q. Xiong, W. Xu, P. Yin, H. Zeng, Z. Zeng, T. Zhai, H. Zhang, H. Zhang, Q. Zhang, T. Zhang, X. Zhang, L.D. Zhao, M. Zhao, W. Zhao, Y. Zhao, K.G. Zhou, X. Zhou, Y. Zhou, H. Zhu, H. Zhang, Z. Liu, Acta Physico-Chimica Sinica 37 (2021). date_created: 2024-01-14T23:00:58Z date_published: 2021-10-13T00:00:00Z date_updated: 2025-09-10T10:12:25Z day: '13' department: - _id: MaIb doi: 10.3866/PKU.WHXB202108017 external_id: isi: - '000731879300002' fulldoi: https://doi.org/10.3866/PKU.WHXB202108017 intvolume: ' 37' isi: 1 issue: '12' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.3866/PKU.WHXB202108017 month: '10' oa: 1 oa_version: Submitted Version publication: Acta Physico-Chimica Sinica publication_identifier: issn: - 1001-4861 publication_status: published publisher: Peking University quality_controlled: '1' scopus_import: '1' status: public title: Recent progress on two-dimensional materials type: journal_article user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345 volume: 37 year: '2021' ... --- _id: '14889' abstract: - lang: eng text: We consider the Fröhlich Hamiltonian with large coupling constant α. For initial data of Pekar product form with coherent phonon field and with the electron minimizing the corresponding energy, we provide a norm approximation of the evolution, valid up to times of order α2. The approximation is given in terms of a Pekar product state, evolved through the Landau-Pekar equations, corrected by a Bogoliubov dynamics taking quantum fluctuations into account. This allows us to show that the Landau-Pekar equations approximately describe the evolution of the electron- and one-phonon reduced density matrices under the Fröhlich dynamics up to times of order α2. acknowledgement: "Financial support by the European Union’s Horizon 2020 research and innovation programme\r\nunder the Marie Skłodowska-Curie grant agreement No. 754411 (S.R.) and the European\r\nResearch Council under grant agreement No. 694227 (N.L. and R.S.), as well as by the SNSF\r\nEccellenza project PCEFP2 181153 (N.L.), the NCCR SwissMAP (N.L. and B.S.) and by the\r\nDeutsche Forschungsgemeinschaft (DFG) through the Research Training Group 1838: Spectral\r\nTheory and Dynamics of Quantum Systems (D.M.) is gratefully acknowledged. B.S. gratefully\r\nacknowledges financial support from the Swiss National Science Foundation through the Grant\r\n“Dynamical and energetic properties of Bose-Einstein condensates” and from the European\r\nResearch Council through the ERC-AdG CLaQS (grant agreement No 834782). D.M. thanks\r\nMarcel Griesemer for helpful discussions." article_processing_charge: No article_type: original arxiv: 1 author: - first_name: Nikolai K full_name: Leopold, Nikolai K id: 4BC40BEC-F248-11E8-B48F-1D18A9856A87 last_name: Leopold orcid: 0000-0002-0495-6822 - first_name: David Johannes full_name: Mitrouskas, David Johannes id: cbddacee-2b11-11eb-a02e-a2e14d04e52d last_name: Mitrouskas - first_name: Simone Anna Elvira full_name: Rademacher, Simone Anna Elvira id: 856966FE-A408-11E9-977E-802DE6697425 last_name: Rademacher orcid: 0000-0001-5059-4466 - first_name: Benjamin full_name: Schlein, Benjamin last_name: Schlein - first_name: Robert full_name: Seiringer, Robert id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 citation: ama: Leopold NK, Mitrouskas DJ, Rademacher SAE, Schlein B, Seiringer R. Landau–Pekar equations and quantum fluctuations for the dynamics of a strongly coupled polaron. Pure and Applied Analysis. 2021;3(4):653-676. doi:10.2140/paa.2021.3.653 apa: Leopold, N. K., Mitrouskas, D. J., Rademacher, S. A. E., Schlein, B., & Seiringer, R. (2021). Landau–Pekar equations and quantum fluctuations for the dynamics of a strongly coupled polaron. Pure and Applied Analysis. Mathematical Sciences Publishers. https://doi.org/10.2140/paa.2021.3.653 chicago: Leopold, Nikolai K, David Johannes Mitrouskas, Simone Anna Elvira Rademacher, Benjamin Schlein, and Robert Seiringer. “Landau–Pekar Equations and Quantum Fluctuations for the Dynamics of a Strongly Coupled Polaron.” Pure and Applied Analysis. Mathematical Sciences Publishers, 2021. https://doi.org/10.2140/paa.2021.3.653. ieee: N. K. Leopold, D. J. Mitrouskas, S. A. E. Rademacher, B. Schlein, and R. Seiringer, “Landau–Pekar equations and quantum fluctuations for the dynamics of a strongly coupled polaron,” Pure and Applied Analysis, vol. 3, no. 4. Mathematical Sciences Publishers, pp. 653–676, 2021. ista: Leopold NK, Mitrouskas DJ, Rademacher SAE, Schlein B, Seiringer R. 2021. Landau–Pekar equations and quantum fluctuations for the dynamics of a strongly coupled polaron. Pure and Applied Analysis. 3(4), 653–676. mla: Leopold, Nikolai K., et al. “Landau–Pekar Equations and Quantum Fluctuations for the Dynamics of a Strongly Coupled Polaron.” Pure and Applied Analysis, vol. 3, no. 4, Mathematical Sciences Publishers, 2021, pp. 653–76, doi:10.2140/paa.2021.3.653. short: N.K. Leopold, D.J. Mitrouskas, S.A.E. Rademacher, B. Schlein, R. Seiringer, Pure and Applied Analysis 3 (2021) 653–676. corr_author: '1' date_created: 2024-01-28T23:01:43Z date_published: 2021-10-01T00:00:00Z date_updated: 2025-04-14T07:27:00Z day: '01' department: - _id: RoSe doi: 10.2140/paa.2021.3.653 ec_funded: 1 external_id: arxiv: - '2005.02098' fulldoi: https://doi.org/10.2140/paa.2021.3.653 intvolume: ' 3' issue: '4' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.48550/arXiv.2005.02098 month: '10' oa: 1 oa_version: Preprint page: 653-676 project: - _id: 260C2330-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '754411' name: ISTplus - Postdoctoral Fellowships - _id: 25C6DC12-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '694227' name: Analysis of quantum many-body systems publication: Pure and Applied Analysis publication_identifier: eissn: - 2578-5885 issn: - 2578-5893 publication_status: published publisher: Mathematical Sciences Publishers quality_controlled: '1' scopus_import: '1' status: public title: Landau–Pekar equations and quantum fluctuations for the dynamics of a strongly coupled polaron type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 3 year: '2021' ... --- _id: '14890' abstract: - lang: eng text: We consider a system of N interacting bosons in the mean-field scaling regime and construct corrections to the Bogoliubov dynamics that approximate the true N-body dynamics in norm to arbitrary precision. The N-independent corrections are given in terms of the solutions of the Bogoliubov and Hartree equations and satisfy a generalized form of Wick's theorem. We determine the n-point correlation functions of the excitations around the condensate, as well as the reduced densities of the N-body system, to arbitrary accuracy, given only the knowledge of the two-point functions of a quasi-free state and the solution of the Hartree equation. In this way, the complex problem of computing all n-point correlation functions for an interacting N-body system is essentially reduced to the problem of solving the Hartree equation and the PDEs for the Bogoliubov two-point functions. acknowledgement: "We are grateful for the hospitality of Central China Normal University (CCNU),\r\nwhere parts of this work were done, and thank Phan Th`anh Nam, Simone\r\nRademacher, Robert Seiringer and Stefan Teufel for helpful discussions. L.B. gratefully acknowledges the support by the German Research Foundation (DFG) within the Research\r\nTraining Group 1838 “Spectral Theory and Dynamics of Quantum Systems”, and the funding\r\nfrom the European Union’s Horizon 2020 research and innovation programme under the Marie\r\nSk lodowska-Curie Grant Agreement No. 754411." article_processing_charge: No article_type: original arxiv: 1 author: - first_name: Lea full_name: Bossmann, Lea id: A2E3BCBE-5FCC-11E9-AA4B-76F3E5697425 last_name: Bossmann orcid: 0000-0002-6854-1343 - first_name: Sören P full_name: Petrat, Sören P id: 40AC02DC-F248-11E8-B48F-1D18A9856A87 last_name: Petrat orcid: 0000-0002-9166-5889 - first_name: Peter full_name: Pickl, Peter last_name: Pickl - first_name: Avy full_name: Soffer, Avy last_name: Soffer citation: ama: Bossmann L, Petrat SP, Pickl P, Soffer A. Beyond Bogoliubov dynamics. Pure and Applied Analysis. 2021;3(4):677-726. doi:10.2140/paa.2021.3.677 apa: Bossmann, L., Petrat, S. P., Pickl, P., & Soffer, A. (2021). Beyond Bogoliubov dynamics. Pure and Applied Analysis. Mathematical Sciences Publishers. https://doi.org/10.2140/paa.2021.3.677 chicago: Bossmann, Lea, Sören P Petrat, Peter Pickl, and Avy Soffer. “Beyond Bogoliubov Dynamics.” Pure and Applied Analysis. Mathematical Sciences Publishers, 2021. https://doi.org/10.2140/paa.2021.3.677. ieee: L. Bossmann, S. P. Petrat, P. Pickl, and A. Soffer, “Beyond Bogoliubov dynamics,” Pure and Applied Analysis, vol. 3, no. 4. Mathematical Sciences Publishers, pp. 677–726, 2021. ista: Bossmann L, Petrat SP, Pickl P, Soffer A. 2021. Beyond Bogoliubov dynamics. Pure and Applied Analysis. 3(4), 677–726. mla: Bossmann, Lea, et al. “Beyond Bogoliubov Dynamics.” Pure and Applied Analysis, vol. 3, no. 4, Mathematical Sciences Publishers, 2021, pp. 677–726, doi:10.2140/paa.2021.3.677. short: L. Bossmann, S.P. Petrat, P. Pickl, A. Soffer, Pure and Applied Analysis 3 (2021) 677–726. corr_author: '1' date_created: 2024-01-28T23:01:43Z date_published: 2021-10-01T00:00:00Z date_updated: 2025-04-14T07:44:02Z day: '01' department: - _id: RoSe doi: 10.2140/paa.2021.3.677 ec_funded: 1 external_id: arxiv: - '1912.11004' fulldoi: https://doi.org/10.2140/paa.2021.3.677 intvolume: ' 3' issue: '4' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.48550/arXiv.1912.11004 month: '10' oa: 1 oa_version: Preprint page: 677-726 project: - _id: 260C2330-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '754411' name: ISTplus - Postdoctoral Fellowships publication: Pure and Applied Analysis publication_identifier: eissn: - 2578-5885 issn: - 2578-5893 publication_status: published publisher: Mathematical Sciences Publishers quality_controlled: '1' scopus_import: '1' status: public title: Beyond Bogoliubov dynamics type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 3 year: '2021' ... --- _id: '14984' abstract: - lang: eng text: Hybrid zones are narrow geographic regions where different populations, races or interbreeding species meet and mate, producing mixed ‘hybrid’ offspring. They are relatively common and can be found in a diverse range of organisms and environments. The study of hybrid zones has played an important role in our understanding of the origin of species, with hybrid zones having been described as ‘natural laboratories’. This is because they allow us to study,in situ, the conditions and evolutionary forces that enable divergent taxa to remain distinct despite some ongoing gene exchange between them. article_processing_charge: No author: - first_name: Sean full_name: Stankowski, Sean id: 43161670-5719-11EA-8025-FABC3DDC885E last_name: Stankowski - first_name: Daria full_name: Shipilina, Daria id: 428A94B0-F248-11E8-B48F-1D18A9856A87 last_name: Shipilina orcid: 0000-0002-1145-9226 - first_name: Anja M full_name: Westram, Anja M id: 3C147470-F248-11E8-B48F-1D18A9856A87 last_name: Westram orcid: 0000-0003-1050-4969 citation: ama: 'Stankowski S, Shipilina D, Westram AM. Hybrid Zones. In: Encyclopedia of Life Sciences. Vol 2. eLS. Wiley; 2021. doi:10.1002/9780470015902.a0029355' apa: Stankowski, S., Shipilina, D., & Westram, A. M. (2021). Hybrid Zones. In Encyclopedia of Life Sciences (Vol. 2). Wiley. https://doi.org/10.1002/9780470015902.a0029355 chicago: Stankowski, Sean, Daria Shipilina, and Anja M Westram. “Hybrid Zones.” In Encyclopedia of Life Sciences, Vol. 2. ELS. Wiley, 2021. https://doi.org/10.1002/9780470015902.a0029355. ieee: S. Stankowski, D. Shipilina, and A. M. Westram, “Hybrid Zones,” in Encyclopedia of Life Sciences, vol. 2, Wiley, 2021. ista: 'Stankowski S, Shipilina D, Westram AM. 2021.Hybrid Zones. In: Encyclopedia of Life Sciences. vol. 2.' mla: Stankowski, Sean, et al. “Hybrid Zones.” Encyclopedia of Life Sciences, vol. 2, Wiley, 2021, doi:10.1002/9780470015902.a0029355. short: S. Stankowski, D. Shipilina, A.M. Westram, in:, Encyclopedia of Life Sciences, Wiley, 2021. corr_author: '1' date_created: 2024-02-14T12:05:50Z date_published: 2021-05-28T00:00:00Z date_updated: 2024-10-09T21:08:11Z day: '28' department: - _id: NiBa doi: 10.1002/9780470015902.a0029355 fulldoi: https://doi.org/10.1002/9780470015902.a0029355 intvolume: ' 2' language: - iso: eng month: '05' oa_version: None publication: Encyclopedia of Life Sciences publication_identifier: eisbn: - '9780470015902' isbn: - '9780470016176' publication_status: published publisher: Wiley quality_controlled: '1' series_title: eLS status: public title: Hybrid Zones type: book_chapter user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 2 year: '2021' ... --- _id: '14987' abstract: - lang: eng text: "The goal of zero-shot learning is to construct a classifier that can identify object classes for which no training examples are available. When training data for some of the object classes is available but not for others, the name generalized zero-shot learning is commonly used.\r\nIn a wider sense, the phrase zero-shot is also used to describe other machine learning-based approaches that require no training data from the problem of interest, such as zero-shot action recognition or zero-shot machine translation." article_processing_charge: No author: - first_name: Christoph full_name: Lampert, Christoph id: 40C20FD2-F248-11E8-B48F-1D18A9856A87 last_name: Lampert orcid: 0000-0001-8622-7887 citation: ama: 'Lampert C. Zero-Shot Learning. In: Ikeuchi K, ed. Computer Vision. 2nd ed. Cham: Springer; 2021:1395-1397. doi:10.1007/978-3-030-63416-2_874' apa: 'Lampert, C. (2021). Zero-Shot Learning. In K. Ikeuchi (Ed.), Computer Vision (2nd ed., pp. 1395–1397). Cham: Springer. https://doi.org/10.1007/978-3-030-63416-2_874' chicago: 'Lampert, Christoph. “Zero-Shot Learning.” In Computer Vision, edited by Katsushi Ikeuchi, 2nd ed., 1395–97. Cham: Springer, 2021. https://doi.org/10.1007/978-3-030-63416-2_874.' ieee: 'C. Lampert, “Zero-Shot Learning,” in Computer Vision, 2nd ed., K. Ikeuchi, Ed. Cham: Springer, 2021, pp. 1395–1397.' ista: 'Lampert C. 2021.Zero-Shot Learning. In: Computer Vision. , 1395–1397.' mla: Lampert, Christoph. “Zero-Shot Learning.” Computer Vision, edited by Katsushi Ikeuchi, 2nd ed., Springer, 2021, pp. 1395–97, doi:10.1007/978-3-030-63416-2_874. short: C. Lampert, in:, K. Ikeuchi (Ed.), Computer Vision, 2nd ed., Springer, Cham, 2021, pp. 1395–1397. corr_author: '1' date_created: 2024-02-14T14:05:32Z date_published: 2021-10-13T00:00:00Z date_updated: 2024-10-09T21:08:12Z day: '13' department: - _id: ChLa doi: 10.1007/978-3-030-63416-2_874 edition: '2' editor: - first_name: Katsushi full_name: Ikeuchi, Katsushi last_name: Ikeuchi fulldoi: https://doi.org/10.1007/978-3-030-63416-2_874 language: - iso: eng month: '10' oa_version: None page: 1395-1397 place: Cham publication: Computer Vision publication_identifier: eisbn: - '9783030634162' isbn: - '9783030634155' publication_status: published publisher: Springer quality_controlled: '1' status: public title: Zero-Shot Learning type: book_chapter user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2021' ... --- _id: '14988' abstract: - lang: eng text: Raw data generated from the publication - The TPLATE complex mediates membrane bending during plant clathrin-mediated endocytosis by Johnson et al., 2021 In PNAS article_processing_charge: No author: - first_name: Alexander J full_name: Johnson, Alexander J id: 46A62C3A-F248-11E8-B48F-1D18A9856A87 last_name: Johnson orcid: 0000-0002-2739-8843 citation: ama: Johnson AJ. Raw data from Johnson et al, PNAS, 2021. 2021. doi:10.5281/ZENODO.5747100 apa: Johnson, A. J. (2021). Raw data from Johnson et al, PNAS, 2021. Zenodo. https://doi.org/10.5281/ZENODO.5747100 chicago: Johnson, Alexander J. “Raw Data from Johnson et Al, PNAS, 2021.” Zenodo, 2021. https://doi.org/10.5281/ZENODO.5747100. ieee: A. J. Johnson, “Raw data from Johnson et al, PNAS, 2021.” Zenodo, 2021. ista: Johnson AJ. 2021. Raw data from Johnson et al, PNAS, 2021, Zenodo, 10.5281/ZENODO.5747100. mla: Johnson, Alexander J. Raw Data from Johnson et Al, PNAS, 2021. Zenodo, 2021, doi:10.5281/ZENODO.5747100. short: A.J. Johnson, (2021). corr_author: '1' date_created: 2024-02-14T14:13:48Z date_published: 2021-12-01T00:00:00Z date_updated: 2025-05-14T09:25:33Z day: '01' ddc: - '580' department: - _id: JiFr doi: 10.5281/ZENODO.5747100 fulldoi: https://doi.org/10.5281/ZENODO.5747100 has_accepted_license: '1' main_file_link: - open_access: '1' url: https://doi.org/10.5281/zenodo.5747100 month: '12' oa: 1 oa_version: Published Version publisher: Zenodo related_material: record: - id: '9887' relation: used_in_publication status: public status: public title: Raw data from Johnson et al, PNAS, 2021 tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: research_data_reference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2021' ... --- _id: '15013' abstract: - lang: eng text: We consider random n×n matrices X with independent and centered entries and a general variance profile. We show that the spectral radius of X converges with very high probability to the square root of the spectral radius of the variance matrix of X when n tends to infinity. We also establish the optimal rate of convergence, that is a new result even for general i.i.d. matrices beyond the explicitly solvable Gaussian cases. The main ingredient is the proof of the local inhomogeneous circular law [arXiv:1612.07776] at the spectral edge. acknowledgement: Partially supported by ERC Starting Grant RandMat No. 715539 and the SwissMap grant of Swiss National Science Foundation. Partially supported by ERC Advanced Grant RanMat No. 338804. Partially supported by the Hausdorff Center for Mathematics in Bonn. article_processing_charge: No article_type: original arxiv: 1 author: - first_name: Johannes full_name: Alt, Johannes id: 36D3D8B6-F248-11E8-B48F-1D18A9856A87 last_name: Alt - first_name: László full_name: Erdös, László id: 4DBD5372-F248-11E8-B48F-1D18A9856A87 last_name: Erdös orcid: 0000-0001-5366-9603 - first_name: Torben H full_name: Krüger, Torben H id: 3020C786-F248-11E8-B48F-1D18A9856A87 last_name: Krüger orcid: 0000-0002-4821-3297 citation: ama: Alt J, Erdös L, Krüger TH. Spectral radius of random matrices with independent entries. Probability and Mathematical Physics. 2021;2(2):221-280. doi:10.2140/pmp.2021.2.221 apa: Alt, J., Erdös, L., & Krüger, T. H. (2021). Spectral radius of random matrices with independent entries. Probability and Mathematical Physics. Mathematical Sciences Publishers. https://doi.org/10.2140/pmp.2021.2.221 chicago: Alt, Johannes, László Erdös, and Torben H Krüger. “Spectral Radius of Random Matrices with Independent Entries.” Probability and Mathematical Physics. Mathematical Sciences Publishers, 2021. https://doi.org/10.2140/pmp.2021.2.221. ieee: J. Alt, L. Erdös, and T. H. Krüger, “Spectral radius of random matrices with independent entries,” Probability and Mathematical Physics, vol. 2, no. 2. Mathematical Sciences Publishers, pp. 221–280, 2021. ista: Alt J, Erdös L, Krüger TH. 2021. Spectral radius of random matrices with independent entries. Probability and Mathematical Physics. 2(2), 221–280. mla: Alt, Johannes, et al. “Spectral Radius of Random Matrices with Independent Entries.” Probability and Mathematical Physics, vol. 2, no. 2, Mathematical Sciences Publishers, 2021, pp. 221–80, doi:10.2140/pmp.2021.2.221. short: J. Alt, L. Erdös, T.H. Krüger, Probability and Mathematical Physics 2 (2021) 221–280. corr_author: '1' date_created: 2024-02-18T23:01:03Z date_published: 2021-05-21T00:00:00Z date_updated: 2025-04-15T08:05:02Z day: '21' department: - _id: LaEr doi: 10.2140/pmp.2021.2.221 ec_funded: 1 external_id: arxiv: - '1907.13631' fulldoi: https://doi.org/10.2140/pmp.2021.2.221 intvolume: ' 2' issue: '2' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.48550/arXiv.1907.13631 month: '05' oa: 1 oa_version: Preprint page: 221-280 project: - _id: 258DCDE6-B435-11E9-9278-68D0E5697425 call_identifier: FP7 grant_number: '338804' name: Random matrices, universality and disordered quantum systems publication: Probability and Mathematical Physics publication_identifier: eissn: - 2690-1005 issn: - 2690-0998 publication_status: published publisher: Mathematical Sciences Publishers quality_controlled: '1' scopus_import: '1' status: public title: Spectral radius of random matrices with independent entries type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 2 year: '2021' ... --- _id: '15254' abstract: - lang: eng text: We consider the problem of reliable communication over a network containing a hidden myopic adversary who can eavesdrop on some zro links, jam some zwo links, and do both on some zrw links. We provide the first information-theoretically tight characterization of the optimal rate of communication possible under all possible settings of the tuple (zro,zwo,zrw) by providing a novel coding scheme/analysis for a subset of parameter regimes. In particular, our vanishing-error schemes bypass the Network Singleton Bound (which requires a zero-error recovery criteria) in a certain parameter regime where the capacity had been heretofore open. As a direct corollary we also obtain the capacity of the corresponding problem where information-theoretic secrecy against eavesdropping is required in addition to reliable communication. acknowledgement: The work of Rawad Bitar was supported in part by the Technical University of Munich—Institute for Advanced Studies, funded by the German Excellence Initiative and European Union Seventh Framework Programme under Grant 291763. The work of Sidharth Jaggi was supported by the Hong Kong UGC GRF under Grant 14304418, Grant 14300617, and Grant 14313116. The work of Yihan Zhang was supported by the European Union’s Horizon 2020 Research and Innovation Programme under Grant 682203-ERC-[Inf-Speed-Tradeoff]. Preliminary results were presented at IEEE International Symposium on information Theory (ISIT). article_processing_charge: No article_type: original arxiv: 1 author: - first_name: Sijie full_name: Li, Sijie last_name: Li - first_name: Rawad full_name: Bitar, Rawad last_name: Bitar - first_name: Sidharth full_name: Jaggi, Sidharth last_name: Jaggi - first_name: Yihan full_name: Zhang, Yihan id: 2ce5da42-b2ea-11eb-bba5-9f264e9d002c last_name: Zhang orcid: 0000-0002-6465-6258 citation: ama: Li S, Bitar R, Jaggi S, Zhang Y. Network coding with myopic adversaries. IEEE Journal on Selected Areas in Information Theory. 2021;2(4):1108-1119. doi:10.1109/JSAIT.2021.3126474 apa: Li, S., Bitar, R., Jaggi, S., & Zhang, Y. (2021). Network coding with myopic adversaries. IEEE Journal on Selected Areas in Information Theory. IEEE. https://doi.org/10.1109/JSAIT.2021.3126474 chicago: Li, Sijie, Rawad Bitar, Sidharth Jaggi, and Yihan Zhang. “Network Coding with Myopic Adversaries.” IEEE Journal on Selected Areas in Information Theory. IEEE, 2021. https://doi.org/10.1109/JSAIT.2021.3126474. ieee: S. Li, R. Bitar, S. Jaggi, and Y. Zhang, “Network coding with myopic adversaries,” IEEE Journal on Selected Areas in Information Theory, vol. 2, no. 4. IEEE, pp. 1108–1119, 2021. ista: Li S, Bitar R, Jaggi S, Zhang Y. 2021. Network coding with myopic adversaries. IEEE Journal on Selected Areas in Information Theory. 2(4), 1108–1119. mla: Li, Sijie, et al. “Network Coding with Myopic Adversaries.” IEEE Journal on Selected Areas in Information Theory, vol. 2, no. 4, IEEE, 2021, pp. 1108–19, doi:10.1109/JSAIT.2021.3126474. short: S. Li, R. Bitar, S. Jaggi, Y. Zhang, IEEE Journal on Selected Areas in Information Theory 2 (2021) 1108–1119. date_created: 2024-03-31T22:01:13Z date_published: 2021-12-01T00:00:00Z date_updated: 2024-04-02T08:31:59Z day: '01' department: - _id: MaMo doi: 10.1109/JSAIT.2021.3126474 external_id: arxiv: - '2102.09885' fulldoi: https://doi.org/10.1109/JSAIT.2021.3126474 intvolume: ' 2' issue: '4' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.48550/arXiv.2102.09885 month: '12' oa: 1 oa_version: Preprint page: 1108-1119 publication: IEEE Journal on Selected Areas in Information Theory publication_identifier: eissn: - 2641-8770 publication_status: published publisher: IEEE quality_controlled: '1' scopus_import: '1' status: public title: Network coding with myopic adversaries type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 2 year: '2021' ... --- _id: '15259' abstract: - lang: eng text: "We consider words Gi1⋯Gim involving i.i.d. complex Ginibre matrices and study tracial expressions of their eigenvalues and singular values. We show that the limit distribution of the squared singular values of every word of length m is a Fuss–Catalan distribution with parameter \r\nm+1. This generalizes previous results concerning powers of a complex Ginibre matrix and products of independent Ginibre matrices. In addition, we find other combinatorial parameters of the word that determine the second-order limits of the spectral statistics. For instance, the so-called coperiod of a word characterizes the fluctuations of the eigenvalues. We extend these results to words of general non-Hermitian matrices with i.i.d. entries under moment-matching assumptions, band matrices, and sparse matrices.\r\nThese results rely on the moments method and genus expansion, relating Gaussian matrix integrals to the counting of compact orientable surfaces of a given genus. This allows us to derive a central limit theorem for the trace of any word of complex Ginibre matrices and their conjugate transposes, where all parameters are defined topologically." acknowledgement: "The authors would like to thank Gernot Akemann, Benson Au, Paul Bourgade, Jesper Ipsen, Camille Male, Jamie Mingo, Doron Puder, Emily Redelmeier, Roland Speicher, Wojciech Tarnowski and Ofer Zeitouni for useful discussions, comments and references as well as the anonymous referee for a suggestion that greatly improved one of the theorems.\r\nG.D. gratefully acknowledges support from the grants NSF DMS-1812114 of P. Bourgade (PI) and NSF CAREER DMS-1653602 of L.-P. Arguin (PI), as well as the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411." article_processing_charge: No article_type: original arxiv: 1 author: - first_name: Guillaume full_name: Dubach, Guillaume id: D5C6A458-10C4-11EA-ABF4-A4B43DDC885E last_name: Dubach orcid: 0000-0001-6892-8137 - first_name: Yuval full_name: Peled, Yuval last_name: Peled citation: ama: Dubach G, Peled Y. On words of non-Hermitian random matrices. The Annals of Probability. 2021;49(4):1886-1916. doi:10.1214/20-aop1496 apa: Dubach, G., & Peled, Y. (2021). On words of non-Hermitian random matrices. The Annals of Probability. Institute of Mathematical Statistics. https://doi.org/10.1214/20-aop1496 chicago: Dubach, Guillaume, and Yuval Peled. “On Words of Non-Hermitian Random Matrices.” The Annals of Probability. Institute of Mathematical Statistics, 2021. https://doi.org/10.1214/20-aop1496. ieee: G. Dubach and Y. Peled, “On words of non-Hermitian random matrices,” The Annals of Probability, vol. 49, no. 4. Institute of Mathematical Statistics, pp. 1886–1916, 2021. ista: Dubach G, Peled Y. 2021. On words of non-Hermitian random matrices. The Annals of Probability. 49(4), 1886–1916. mla: Dubach, Guillaume, and Yuval Peled. “On Words of Non-Hermitian Random Matrices.” The Annals of Probability, vol. 49, no. 4, Institute of Mathematical Statistics, 2021, pp. 1886–916, doi:10.1214/20-aop1496. short: G. Dubach, Y. Peled, The Annals of Probability 49 (2021) 1886–1916. corr_author: '1' date_created: 2024-04-03T07:19:42Z date_published: 2021-07-01T00:00:00Z date_updated: 2025-09-10T10:13:20Z day: '01' department: - _id: LaEr doi: 10.1214/20-aop1496 ec_funded: 1 external_id: arxiv: - '1904.04312' isi: - '000681349000008' fulldoi: https://doi.org/10.1214/20-aop1496 intvolume: ' 49' isi: 1 issue: '4' keyword: - Statistics - Probability and Uncertainty - Statistics and Probability language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.48550/arXiv.1904.04312 month: '07' oa: 1 oa_version: Preprint page: 1886-1916 project: - _id: 260C2330-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '754411' name: ISTplus - Postdoctoral Fellowships publication: The Annals of Probability publication_identifier: issn: - 0091-1798 publication_status: published publisher: Institute of Mathematical Statistics quality_controlled: '1' scopus_import: '1' status: public title: On words of non-Hermitian random matrices type: journal_article user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345 volume: 49 year: '2021' ... --- OA_place: publisher OA_type: free access _id: '15261' abstract: - lang: eng text: In this article, we study uniqueness of form extensions in a rather general setting. The method is based on the theory of ordered Hilbert spaces and the concept of domination of semigroups. Our main abstract result transfers uniqueness of form extension of a dominating form to that of a dominated form. This result can be applied to a multitude of examples including various magnetic Schrödinger forms on graphs and on manifolds. article_number: '108848' article_processing_charge: No article_type: original author: - first_name: Daniel full_name: Lenz, Daniel last_name: Lenz - first_name: Marcel full_name: Schmidt, Marcel last_name: Schmidt - first_name: Melchior full_name: Wirth, Melchior id: 88644358-0A0E-11EA-8FA5-49A33DDC885E last_name: Wirth orcid: 0000-0002-0519-4241 citation: ama: Lenz D, Schmidt M, Wirth M. Uniqueness of form extensions and domination of semigroups. Journal of Functional Analysis. 2021;280(6). doi:10.1016/j.jfa.2020.108848 apa: Lenz, D., Schmidt, M., & Wirth, M. (2021). Uniqueness of form extensions and domination of semigroups. Journal of Functional Analysis. Elsevier. https://doi.org/10.1016/j.jfa.2020.108848 chicago: Lenz, Daniel, Marcel Schmidt, and Melchior Wirth. “Uniqueness of Form Extensions and Domination of Semigroups.” Journal of Functional Analysis. Elsevier, 2021. https://doi.org/10.1016/j.jfa.2020.108848. ieee: D. Lenz, M. Schmidt, and M. Wirth, “Uniqueness of form extensions and domination of semigroups,” Journal of Functional Analysis, vol. 280, no. 6. Elsevier, 2021. ista: Lenz D, Schmidt M, Wirth M. 2021. Uniqueness of form extensions and domination of semigroups. Journal of Functional Analysis. 280(6), 108848. mla: Lenz, Daniel, et al. “Uniqueness of Form Extensions and Domination of Semigroups.” Journal of Functional Analysis, vol. 280, no. 6, 108848, Elsevier, 2021, doi:10.1016/j.jfa.2020.108848. short: D. Lenz, M. Schmidt, M. Wirth, Journal of Functional Analysis 280 (2021). corr_author: '1' date_created: 2024-04-03T07:24:57Z date_published: 2021-03-15T00:00:00Z date_updated: 2026-06-18T17:46:54Z day: '15' ddc: - '500' department: - _id: JaMa doi: 10.1016/j.jfa.2020.108848 fulldoi: https://doi.org/10.1016/j.jfa.2020.108848 intvolume: ' 280' issue: '6' keyword: - Analysis language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1016/j.jfa.2020.108848 month: '03' oa: 1 oa_version: Published Version publication: Journal of Functional Analysis publication_identifier: eissn: - 1096-0783 issn: - 0022-1236 publication_status: published publisher: Elsevier quality_controlled: '1' scopus_import: '1' status: public title: Uniqueness of form extensions and domination of semigroups type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 280 year: '2021' ... --- _id: '15263' abstract: - lang: eng text: We develop a new Riemannian descent algorithm that relies on momentum to improve over existing first-order methods for geodesically convex optimization. In contrast, accelerated convergence rates proved in prior work have only been shown to hold for geodesically strongly-convex objective functions. We further extend our algorithm to geodesically weakly-quasi-convex objectives. Our proofs of convergence rely on a novel estimate sequence that illustrates the dependency of the convergence rate on the curvature of the manifold. We validate our theoretical results empirically on several optimization problems defined on the sphere and on the manifold of positive definite matrices. acknowledgement: The authors would like to thank professors Nicolas Boumal and Suvrit Sra for helpful discussions on the content of this paper. Gary Bécigneul was funded by the Max Planck ETH Center for Learning Systems during the course of this work. alternative_title: - PMLR article_processing_charge: No arxiv: 1 author: - first_name: Foivos full_name: Alimisis, Foivos id: 19430a34-05f6-11ef-890d-c079cfc60ae2 last_name: Alimisis - first_name: Antonio full_name: Orvieto, Antonio last_name: Orvieto - first_name: Gary full_name: Becigneul, Gary last_name: Becigneul - first_name: Aurelien full_name: Lucchi, Aurelien last_name: Lucchi citation: ama: 'Alimisis F, Orvieto A, Becigneul G, Lucchi A. Momentum improves optimization on Riemannian manifolds. In: Proceedings of the 24th International Conference on Artificial Intelligence and Statistics. Vol 130. ML Research Press; 2021:1351-1359.' apa: 'Alimisis, F., Orvieto, A., Becigneul, G., & Lucchi, A. (2021). Momentum improves optimization on Riemannian manifolds. In Proceedings of the 24th International Conference on Artificial Intelligence and Statistics (Vol. 130, pp. 1351–1359). San Diego, CA, United States; Virtual: ML Research Press.' chicago: Alimisis, Foivos, Antonio Orvieto, Gary Becigneul, and Aurelien Lucchi. “Momentum Improves Optimization on Riemannian Manifolds.” In Proceedings of the 24th International Conference on Artificial Intelligence and Statistics, 130:1351–59. ML Research Press, 2021. ieee: F. Alimisis, A. Orvieto, G. Becigneul, and A. Lucchi, “Momentum improves optimization on Riemannian manifolds,” in Proceedings of the 24th International Conference on Artificial Intelligence and Statistics, San Diego, CA, United States; Virtual, 2021, vol. 130, pp. 1351–1359. ista: 'Alimisis F, Orvieto A, Becigneul G, Lucchi A. 2021. Momentum improves optimization on Riemannian manifolds. Proceedings of the 24th International Conference on Artificial Intelligence and Statistics. AISTATS: Conference on Artificial Intelligence and Statistics, PMLR, vol. 130, 1351–1359.' mla: Alimisis, Foivos, et al. “Momentum Improves Optimization on Riemannian Manifolds.” Proceedings of the 24th International Conference on Artificial Intelligence and Statistics, vol. 130, ML Research Press, 2021, pp. 1351–59. short: F. Alimisis, A. Orvieto, G. Becigneul, A. Lucchi, in:, Proceedings of the 24th International Conference on Artificial Intelligence and Statistics, ML Research Press, 2021, pp. 1351–1359. conference: end_date: 2021-04-15 location: San Diego, CA, United States; Virtual name: 'AISTATS: Conference on Artificial Intelligence and Statistics' start_date: 2021-04-13 date_created: 2024-04-03T07:29:49Z date_published: 2021-04-15T00:00:00Z date_updated: 2026-06-18T17:47:19Z day: '15' ddc: - '000' department: - _id: DaAl external_id: arxiv: - '2002.04144' intvolume: ' 130' language: - iso: eng main_file_link: - open_access: '1' url: https://proceedings.mlr.press/v130/alimisis21a.html month: '04' oa: 1 oa_version: Published Version page: 1351-1359 publication: Proceedings of the 24th International Conference on Artificial Intelligence and Statistics publication_status: published publisher: ML Research Press quality_controlled: '1' status: public title: Momentum improves optimization on Riemannian manifolds type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 130 year: '2021' ... --- _id: '15264' abstract: - lang: eng text: Signaling by the B cell antigen receptor (BCR) initiates actin remodeling. The assembly of branched actin networks that are nucleated by the Arp2/3 complex exert outward force on the plasma membrane, allowing B cells to form membrane protrusions that can scan the surface of antigen-presenting cells (APCs). The resulting Arp2/3 complex-dependent actin retrograde flow promotes the centripetal movement and progressive coalescence of BCR microclusters, which amplifies BCR signaling. Glia maturation factor γ (GMFγ) is an actin disassembly-protein that releases Arp2/3 complex-nucleated actin filaments from actin networks. By doing so, GMFγ could either oppose the actions of the Arp2/3 complex or support Arp2/3 complex-nucleated actin polymerization by contributing to the recycling of actin monomers and Arp2/3 complexes. We now show that reducing the levels of GMFγ in human B cell lines via transfection with a specific siRNA impairs the ability of B cells to spread on antigen-coated surfaces, decreases the velocity of actin retrograde flow, diminishes the coalescence of BCR microclusters into a central cluster at the B cell-APC contact site, and decreases APC-induced BCR signaling. These effects of depleting GMFγ are similar to what occurs when the Arp2/3 complex is inhibited. This suggests that GMFγ cooperates with the Arp2/3 complex to support BCR-induced actin remodeling and amplify BCR signaling at the immune synapse. article_number: '647063' article_processing_charge: No article_type: original author: - first_name: Nikola full_name: Deretic, Nikola last_name: Deretic - first_name: Madison full_name: Bolger-Munro, Madison id: 516F03FA-93A3-11EA-A7C5-D6BE3DDC885E last_name: Bolger-Munro orcid: 0000-0002-8176-4824 - first_name: Kate full_name: Choi, Kate last_name: Choi - first_name: Libin full_name: Abraham, Libin last_name: Abraham - first_name: Michael R. full_name: Gold, Michael R. last_name: Gold citation: ama: Deretic N, Bolger-Munro M, Choi K, Abraham L, Gold MR. The actin-disassembly protein glia maturation factor γ enhances actin remodeling and B cell antigen receptor signaling at the immune synapse. Frontiers in Cell and Developmental Biology. 2021;9. doi:10.3389/fcell.2021.647063 apa: Deretic, N., Bolger-Munro, M., Choi, K., Abraham, L., & Gold, M. R. (2021). The actin-disassembly protein glia maturation factor γ enhances actin remodeling and B cell antigen receptor signaling at the immune synapse. Frontiers in Cell and Developmental Biology. Frontiers Media. https://doi.org/10.3389/fcell.2021.647063 chicago: Deretic, Nikola, Madison Bolger-Munro, Kate Choi, Libin Abraham, and Michael R. Gold. “The Actin-Disassembly Protein Glia Maturation Factor γ Enhances Actin Remodeling and B Cell Antigen Receptor Signaling at the Immune Synapse.” Frontiers in Cell and Developmental Biology. Frontiers Media, 2021. https://doi.org/10.3389/fcell.2021.647063. ieee: N. Deretic, M. Bolger-Munro, K. Choi, L. Abraham, and M. R. Gold, “The actin-disassembly protein glia maturation factor γ enhances actin remodeling and B cell antigen receptor signaling at the immune synapse,” Frontiers in Cell and Developmental Biology, vol. 9. Frontiers Media, 2021. ista: Deretic N, Bolger-Munro M, Choi K, Abraham L, Gold MR. 2021. The actin-disassembly protein glia maturation factor γ enhances actin remodeling and B cell antigen receptor signaling at the immune synapse. Frontiers in Cell and Developmental Biology. 9, 647063. mla: Deretic, Nikola, et al. “The Actin-Disassembly Protein Glia Maturation Factor γ Enhances Actin Remodeling and B Cell Antigen Receptor Signaling at the Immune Synapse.” Frontiers in Cell and Developmental Biology, vol. 9, 647063, Frontiers Media, 2021, doi:10.3389/fcell.2021.647063. short: N. Deretic, M. Bolger-Munro, K. Choi, L. Abraham, M.R. Gold, Frontiers in Cell and Developmental Biology 9 (2021). date_created: 2024-04-03T07:34:08Z date_published: 2021-07-01T00:00:00Z date_updated: 2024-04-03T14:10:25Z day: '01' ddc: - '570' department: - _id: CaHe doi: 10.3389/fcell.2021.647063 external_id: pmid: - '34336818' file: - access_level: open_access checksum: f6330b5c6718d6780383c0300fd4ef12 content_type: application/pdf creator: dernst date_created: 2024-04-03T14:08:05Z date_updated: 2024-04-03T14:08:05Z file_id: '15291' file_name: 2021_Frontiers_Deretic.pdf file_size: 7430029 relation: main_file success: 1 file_date_updated: 2024-04-03T14:08:05Z fulldoi: https://doi.org/10.3389/fcell.2021.647063 has_accepted_license: '1' intvolume: ' 9' keyword: - Cell Biology - Developmental Biology language: - iso: eng month: '07' oa: 1 oa_version: Published Version pmid: 1 publication: Frontiers in Cell and Developmental Biology publication_identifier: issn: - 2296-634X publication_status: published publisher: Frontiers Media quality_controlled: '1' scopus_import: '1' status: public title: The actin-disassembly protein glia maturation factor γ enhances actin remodeling and B cell antigen receptor signaling at the immune synapse tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 9 year: '2021' ... --- _id: '15265' abstract: - lang: eng text: 'The highly enhanced thermoelectric figure of merit, zT ≈ 2.6 at 573 K, obtained recently in Cd-doped polycrystalline AgSbTe2 by Roychowdhury et al. ( Science 2021, 371, 722) brings it to the forefront of thermoelectric and energy materials research. Ag/Sb cationic ordering in polycrystalline AgSbTe2 was a challenging issue for a long time: their ordered arrangement in the cationic sublattice in polycrystalline samples remained elusive despite multiple theoretical predictions and experimental studies. Recently, selective cation doping has been used to enhance the Ag/Sb ordering, and cation ordered nanoscale (2–4 nm) domains were observed in polycrystalline AgSbTe2, which reduce lattice thermal conductivity. The enhanced cation ordering also delocalizes disorder-induced localized electronic states, and consequently the electronic transport enhances. In this Focus Review, we provide the details of the rational design of a high-performance thermoelectric material using the recently developed atomic order–disorder optimization strategy with AgSbTe2 as an example. Atomic disorder is ubiquitous in most thermoelectric materials, and the atomic order–disorder optimization strategy applies to a large variety of thermoelectric materials.' article_processing_charge: No article_type: original author: - first_name: Tanmoy full_name: Ghosh, Tanmoy id: a5fc9bc3-feff-11ea-93fe-e8015a3c7e9d last_name: Ghosh - first_name: Subhajit full_name: Roychowdhury, Subhajit last_name: Roychowdhury - first_name: Moinak full_name: Dutta, Moinak last_name: Dutta - first_name: Kanishka full_name: Biswas, Kanishka last_name: Biswas citation: ama: 'Ghosh T, Roychowdhury S, Dutta M, Biswas K. High-performance thermoelectric energy conversion: A tale of atomic ordering in AgSbTe2. ACS Energy Letters. 2021;6(8):2825-2837. doi:10.1021/acsenergylett.1c01184' apa: 'Ghosh, T., Roychowdhury, S., Dutta, M., & Biswas, K. (2021). High-performance thermoelectric energy conversion: A tale of atomic ordering in AgSbTe2. ACS Energy Letters. American Chemical Society. https://doi.org/10.1021/acsenergylett.1c01184' chicago: 'Ghosh, Tanmoy, Subhajit Roychowdhury, Moinak Dutta, and Kanishka Biswas. “High-Performance Thermoelectric Energy Conversion: A Tale of Atomic Ordering in AgSbTe2.” ACS Energy Letters. American Chemical Society, 2021. https://doi.org/10.1021/acsenergylett.1c01184.' ieee: 'T. Ghosh, S. Roychowdhury, M. Dutta, and K. Biswas, “High-performance thermoelectric energy conversion: A tale of atomic ordering in AgSbTe2,” ACS Energy Letters, vol. 6, no. 8. American Chemical Society, pp. 2825–2837, 2021.' ista: 'Ghosh T, Roychowdhury S, Dutta M, Biswas K. 2021. High-performance thermoelectric energy conversion: A tale of atomic ordering in AgSbTe2. ACS Energy Letters. 6(8), 2825–2837.' mla: 'Ghosh, Tanmoy, et al. “High-Performance Thermoelectric Energy Conversion: A Tale of Atomic Ordering in AgSbTe2.” ACS Energy Letters, vol. 6, no. 8, American Chemical Society, 2021, pp. 2825–37, doi:10.1021/acsenergylett.1c01184.' short: T. Ghosh, S. Roychowdhury, M. Dutta, K. Biswas, ACS Energy Letters 6 (2021) 2825–2837. date_created: 2024-04-03T07:36:10Z date_published: 2021-07-21T00:00:00Z date_updated: 2024-04-29T06:56:57Z day: '21' department: - _id: MaIb doi: 10.1021/acsenergylett.1c01184 fulldoi: https://doi.org/10.1021/acsenergylett.1c01184 intvolume: ' 6' issue: '8' keyword: - Materials Chemistry - Energy Engineering and Power Technology - Fuel Technology - Renewable Energy - Sustainability and the Environment - Chemistry (miscellaneous) language: - iso: eng month: '07' oa_version: None page: 2825-2837 publication: ACS Energy Letters publication_identifier: issn: - 2380-8195 publication_status: published publisher: American Chemical Society quality_controlled: '1' status: public title: 'High-performance thermoelectric energy conversion: A tale of atomic ordering in AgSbTe2' type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 6 year: '2021' ... --- _id: '15266' abstract: - lang: eng text: Plant pathogens often exploit a whole range of effectors to facilitate infection. The RXLR effector AVR1 produced by the oomycete plant pathogen Phytophthora infestans suppresses host defense by targeting Sec5. Sec5 is a subunit of the exocyst, a protein complex that is important for mediating polarized exocytosis during plant development and defense against pathogens. The mechanism by which AVR1 manipulates Sec5 functioning is unknown. In this study, we analyzed the effect of AVR1 on Sec5 localization and functioning in the moss Physcomitrium patens. P. patens has four Sec5 homologs. Two (PpSec5b and PpSec5d) were found to interact with AVR1 in yeast-two-hybrid assays while none of the four showed a positive interaction with AVR1ΔT, a truncated version of AVR1. In P. patens lines carrying β-estradiol inducible AVR1 or AVR1ΔT transgenes, expression of AVR1 or AVR1ΔT caused defects in the development of caulonemal protonema cells and abnormal morphology of chloronema cells. Similar phenotypes were observed in Sec5- or Sec6-silenced P. patens lines, suggesting that both AVR1 and AVR1ΔT affect exocyst functioning in P. patens. With respect to Sec5 localization we found no differences between β-estradiol-treated and untreated transgenic AVR1 lines. Sec5 localizes at the plasma membrane in growing caulonema cells, also during pathogen attack, and its subcellular localization is the same, with or without AVR1 in the vicinity. article_number: e0249637 article_processing_charge: Yes article_type: original author: - first_name: Elysa J. R. full_name: Overdijk, Elysa J. R. last_name: Overdijk - first_name: Vera full_name: Putker, Vera last_name: Putker - first_name: Joep full_name: Smits, Joep last_name: Smits - first_name: Han full_name: Tang, Han id: 19BDF720-25A0-11EA-AC6E-928F3DDC885E last_name: Tang orcid: 0000-0001-6152-6637 - first_name: Klaas full_name: Bouwmeester, Klaas last_name: Bouwmeester - first_name: Francine full_name: Govers, Francine last_name: Govers - first_name: Tijs full_name: Ketelaar, Tijs last_name: Ketelaar citation: ama: Overdijk EJR, Putker V, Smits J, et al. Phytophthora infestans RXLR effector AVR1 disturbs the growth of Physcomitrium patens without affecting Sec5 localization. PLoS One. 2021;16(4). doi:10.1371/journal.pone.0249637 apa: Overdijk, E. J. R., Putker, V., Smits, J., Tang, H., Bouwmeester, K., Govers, F., & Ketelaar, T. (2021). Phytophthora infestans RXLR effector AVR1 disturbs the growth of Physcomitrium patens without affecting Sec5 localization. PLoS One. Public Library of Science. https://doi.org/10.1371/journal.pone.0249637 chicago: Overdijk, Elysa J. R., Vera Putker, Joep Smits, Han Tang, Klaas Bouwmeester, Francine Govers, and Tijs Ketelaar. “Phytophthora Infestans RXLR Effector AVR1 Disturbs the Growth of Physcomitrium Patens without Affecting Sec5 Localization.” PLoS One. Public Library of Science, 2021. https://doi.org/10.1371/journal.pone.0249637. ieee: E. J. R. Overdijk et al., “Phytophthora infestans RXLR effector AVR1 disturbs the growth of Physcomitrium patens without affecting Sec5 localization,” PLoS One, vol. 16, no. 4. Public Library of Science, 2021. ista: Overdijk EJR, Putker V, Smits J, Tang H, Bouwmeester K, Govers F, Ketelaar T. 2021. Phytophthora infestans RXLR effector AVR1 disturbs the growth of Physcomitrium patens without affecting Sec5 localization. PLoS One. 16(4), e0249637. mla: Overdijk, Elysa J. R., et al. “Phytophthora Infestans RXLR Effector AVR1 Disturbs the Growth of Physcomitrium Patens without Affecting Sec5 Localization.” PLoS One, vol. 16, no. 4, e0249637, Public Library of Science, 2021, doi:10.1371/journal.pone.0249637. short: E.J.R. Overdijk, V. Putker, J. Smits, H. Tang, K. Bouwmeester, F. Govers, T. Ketelaar, PLoS One 16 (2021). date_created: 2024-04-03T07:38:14Z date_published: 2021-04-08T00:00:00Z date_updated: 2024-04-29T06:53:15Z day: '08' ddc: - '580' department: - _id: JiFr doi: 10.1371/journal.pone.0249637 external_id: pmid: - '33831039' file: - access_level: open_access checksum: 25b7b329435af57db2c95571a8ef32fe content_type: application/pdf creator: dernst date_created: 2024-04-29T06:51:59Z date_updated: 2024-04-29T06:51:59Z file_id: '15349' file_name: 2021_PlosOne_Overdijk.pdf file_size: 4738995 relation: main_file success: 1 file_date_updated: 2024-04-29T06:51:59Z fulldoi: https://doi.org/10.1371/journal.pone.0249637 has_accepted_license: '1' intvolume: ' 16' issue: '4' keyword: - Multidisciplinary language: - iso: eng month: '04' oa: 1 oa_version: Published Version pmid: 1 publication: PLoS One publication_identifier: issn: - 1932-6203 publication_status: published publisher: Public Library of Science quality_controlled: '1' status: public title: Phytophthora infestans RXLR effector AVR1 disturbs the growth of Physcomitrium patens without affecting Sec5 localization tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 16 year: '2021' ... --- _id: '15269' abstract: - lang: eng text: We study different aspects of quantum field theory at finite density using methods from quantum information theory. For simplicity we focus on massive Dirac fermions with nonzero chemical potential, and work in 1 + 1 space-time dimensions. Using the entanglement entropy on an interval, we construct an entropic c-function that is finite. Unlike what happens in Lorentz-invariant theories, this c-function exhibits a strong violation of monotonicity; it also encodes the creation of long-range entanglement from the Fermi surface. Motivated by previous works on lattice models, we next calculate numerically the Renyi entropies and find Friedel-type oscillations; these are understood in terms of a defect operator product expansion. Furthermore, we consider the mutual information as a measure of correlation functions between different regions. Using a long-distance expansion previously developed by Cardy, we argue that the mutual information detects Fermi surface correlations already at leading order in the expansion. We also analyze the relative entropy and its Renyi generalizations in order to distinguish states with different charge and/or mass. In particular, we show that states in different superselection sectors give rise to a super-extensive behavior in the relative entropy. Finally, we discuss possible extensions to interacting theories, and argue for the relevance of some of these measures for probing non-Fermi liquids. acknowledgement: "We thank H. Casini for many interesting discussions and comments on the manuscript.\r\nLD is supported by CNEA and UNCuyo, Inst. Balseiro. RM is supported by IST Austria.\r\nMS is supported by CONICET and UNCuyo, Inst. Balseiro. GT is supported by CONICET\r\n(PIP grant 11220150100299), ANPCyT (PICT 2018-2517), CNEA, and UNCuyo,\r\nInst. Balseiro." article_number: '79' article_processing_charge: Yes article_type: original arxiv: 1 author: - first_name: Lucas full_name: Daguerre, Lucas last_name: Daguerre - first_name: Raimel A full_name: Medina Ramos, Raimel A id: CE680B90-D85A-11E9-B684-C920E6697425 last_name: Medina Ramos orcid: 0000-0002-5383-2869 - first_name: Mario full_name: Solís, Mario last_name: Solís - first_name: Gonzalo full_name: Torroba, Gonzalo last_name: Torroba citation: ama: Daguerre L, Medina Ramos RA, Solís M, Torroba G. Aspects of quantum information in finite density field theory. Journal of High Energy Physics. 2021;2021(3). doi:10.1007/jhep03(2021)079 apa: Daguerre, L., Medina Ramos, R. A., Solís, M., & Torroba, G. (2021). Aspects of quantum information in finite density field theory. Journal of High Energy Physics. Springer Nature. https://doi.org/10.1007/jhep03(2021)079 chicago: Daguerre, Lucas, Raimel A Medina Ramos, Mario Solís, and Gonzalo Torroba. “Aspects of Quantum Information in Finite Density Field Theory.” Journal of High Energy Physics. Springer Nature, 2021. https://doi.org/10.1007/jhep03(2021)079. ieee: L. Daguerre, R. A. Medina Ramos, M. Solís, and G. Torroba, “Aspects of quantum information in finite density field theory,” Journal of High Energy Physics, vol. 2021, no. 3. Springer Nature, 2021. ista: Daguerre L, Medina Ramos RA, Solís M, Torroba G. 2021. Aspects of quantum information in finite density field theory. Journal of High Energy Physics. 2021(3), 79. mla: Daguerre, Lucas, et al. “Aspects of Quantum Information in Finite Density Field Theory.” Journal of High Energy Physics, vol. 2021, no. 3, 79, Springer Nature, 2021, doi:10.1007/jhep03(2021)079. short: L. Daguerre, R.A. Medina Ramos, M. Solís, G. Torroba, Journal of High Energy Physics 2021 (2021). corr_author: '1' date_created: 2024-04-03T07:51:06Z date_published: 2021-03-08T00:00:00Z date_updated: 2025-09-10T10:15:02Z day: '08' ddc: - '530' department: - _id: MaSe doi: 10.1007/jhep03(2021)079 external_id: arxiv: - '2011.01252' isi: - '000627376600004' file: - access_level: open_access checksum: 4f540e63988ee87173e02f51a19a6672 content_type: application/pdf creator: dernst date_created: 2024-04-10T09:18:38Z date_updated: 2024-04-10T09:18:38Z file_id: '15310' file_name: 2021_JourHighEnergyPhysics_Daguerre.pdf file_size: 5389195 relation: main_file success: 1 file_date_updated: 2024-04-10T09:18:38Z fulldoi: https://doi.org/10.1007/jhep03(2021)079 has_accepted_license: '1' intvolume: ' 2021' isi: 1 issue: '3' keyword: - Nuclear and High Energy Physics language: - iso: eng month: '03' oa: 1 oa_version: Published Version publication: Journal of High Energy Physics publication_identifier: issn: - 1029-8479 publication_status: published publisher: Springer Nature quality_controlled: '1' scopus_import: '1' status: public title: Aspects of quantum information in finite density field theory tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345 volume: 2021 year: '2021' ... --- _id: '15270' abstract: - lang: eng text: Various toxic compounds disrupt bacterial physiology. While bacteria harbor defense mechanisms to mitigate the toxicity, these mechanisms are often coupled to the physiological state of the cells and become ineffective when the physiology is severely disrupted. article_number: '676' article_processing_charge: Yes article_type: original author: - first_name: Dai full_name: Le, Dai last_name: Le - first_name: Ekaterina full_name: Krasnopeeva, Ekaterina id: 1F1EE44A-BF83-11EA-B3C1-BB9CC619BF3A last_name: Krasnopeeva - first_name: Faris full_name: Sinjab, Faris last_name: Sinjab - first_name: Teuta full_name: Pilizota, Teuta last_name: Pilizota - first_name: Minsu full_name: Kim, Minsu last_name: Kim citation: ama: Le D, Krasnopeeva E, Sinjab F, Pilizota T, Kim M. Active efflux leads to heterogeneous dissipation of proton motive force by protonophores in bacteria. mBio. 2021;12(4). doi:10.1128/mbio.00676-21 apa: Le, D., Krasnopeeva, E., Sinjab, F., Pilizota, T., & Kim, M. (2021). Active efflux leads to heterogeneous dissipation of proton motive force by protonophores in bacteria. MBio. American Society for Microbiology. https://doi.org/10.1128/mbio.00676-21 chicago: Le, Dai, Ekaterina Krasnopeeva, Faris Sinjab, Teuta Pilizota, and Minsu Kim. “Active Efflux Leads to Heterogeneous Dissipation of Proton Motive Force by Protonophores in Bacteria.” MBio. American Society for Microbiology, 2021. https://doi.org/10.1128/mbio.00676-21. ieee: D. Le, E. Krasnopeeva, F. Sinjab, T. Pilizota, and M. Kim, “Active efflux leads to heterogeneous dissipation of proton motive force by protonophores in bacteria,” mBio, vol. 12, no. 4. American Society for Microbiology, 2021. ista: Le D, Krasnopeeva E, Sinjab F, Pilizota T, Kim M. 2021. Active efflux leads to heterogeneous dissipation of proton motive force by protonophores in bacteria. mBio. 12(4), 676. mla: Le, Dai, et al. “Active Efflux Leads to Heterogeneous Dissipation of Proton Motive Force by Protonophores in Bacteria.” MBio, vol. 12, no. 4, 676, American Society for Microbiology, 2021, doi:10.1128/mbio.00676-21. short: D. Le, E. Krasnopeeva, F. Sinjab, T. Pilizota, M. Kim, MBio 12 (2021). date_created: 2024-04-03T07:51:57Z date_published: 2021-08-31T00:00:00Z date_updated: 2024-04-10T09:13:59Z day: '31' ddc: - '570' department: - _id: CaGu doi: 10.1128/mbio.00676-21 external_id: pmid: - '34253054' file: - access_level: open_access checksum: 529e3f97ae5c5f5cc743c4fc130c9440 content_type: application/pdf creator: dernst date_created: 2024-04-10T09:05:49Z date_updated: 2024-04-10T09:05:49Z file_id: '15309' file_name: 2021_mBio_Le.pdf file_size: 1344204 relation: main_file success: 1 file_date_updated: 2024-04-10T09:05:49Z fulldoi: https://doi.org/10.1128/mbio.00676-21 has_accepted_license: '1' intvolume: ' 12' issue: '4' keyword: - Virology - Microbiology language: - iso: eng month: '08' oa: 1 oa_version: Published Version pmid: 1 publication: mBio publication_identifier: issn: - 2150-7511 publication_status: published publisher: American Society for Microbiology quality_controlled: '1' status: public title: Active efflux leads to heterogeneous dissipation of proton motive force by protonophores in bacteria tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 12 year: '2021' ... --- _id: '15271' abstract: - lang: eng text: 'We settle the complexity of the (∆ + 1)-coloring and (∆ + 1)-list coloring problems intheCONGESTED CLIQUEmodel by presenting a simpledeterministicalgorithm for both problemsrunning in a constant number of rounds. This matches the complexity of the recent breakthroughrandomizedconstant-round (∆ + 1)-list coloring algorithm due to Chang et al. [Proceedings of the38th ACM Symposium on Principles of Distributed Computing, 2019] and significantly improvesupon the state-of-the-artO(log ∆)-round deterministic (∆ + 1)-coloring bound of Parter [Proceed-ings of the 45th Annual International Colloquium on Automata, Languages and Programming]. Aremarkable property of our algorithm is its simplicity. Whereas the state-of-the-artrandomizedal-gorithms for this problem are based on the quite involved local coloring algorithm of Chang, Li, andPettie [Proceedings of the 50th Annual ACM SIGACT Symposium on Theory of Computing, 2018],our algorithm can be described in just a few lines. At a high level, it applies a careful derandomiza-tion of a recursive procedure which partitions the nodes and their respective palettes into separatebins. We show that afterO(1) recursion steps, the remaining uncolored subgraph within each bin haslinear size and thus can be solved locally by collecting it to a single node. This algorithm can alsobe implemented in the massively parallel computation (MPC) model provided that each machine haslinear (inn, the number of nodes in the input graph) space. We also show an extension of our algo-rithm to theMPCregime, in which machines havesublinearspace: we present the first deterministic(∆ + 1)-list coloring algorithm designed for sublinear-spaceMPC, which runs inO(log ∆ + log logn)rounds.' acknowledgement: The first author was partially supported by the Centre for Discrete Mathematics and its Applications, by the IBM Faculty Award, and by the EPSRC award EP/N011163/1. The second author was partially supported by the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement 754411. The first and third authors were partially supported by a Weizmann-UK Making Connections grant. article_processing_charge: No article_type: original author: - first_name: Artur full_name: Czumaj, Artur last_name: Czumaj - first_name: Peter full_name: Davies, Peter id: 11396234-BB50-11E9-B24C-90FCE5697425 last_name: Davies orcid: 0000-0002-5646-9524 - first_name: Merav full_name: Parter, Merav last_name: Parter citation: ama: Czumaj A, Davies P, Parter M. Simple, deterministic, constant-round coloring in congested clique and MPC. SIAM Journal on Computing. 2021;50(5):1603-1626. doi:10.1137/20m1366502 apa: Czumaj, A., Davies, P., & Parter, M. (2021). Simple, deterministic, constant-round coloring in congested clique and MPC. SIAM Journal on Computing. Society for Industrial and Applied Mathematics. https://doi.org/10.1137/20m1366502 chicago: Czumaj, Artur, Peter Davies, and Merav Parter. “Simple, Deterministic, Constant-Round Coloring in Congested Clique and MPC.” SIAM Journal on Computing. Society for Industrial and Applied Mathematics, 2021. https://doi.org/10.1137/20m1366502. ieee: A. Czumaj, P. Davies, and M. Parter, “Simple, deterministic, constant-round coloring in congested clique and MPC,” SIAM Journal on Computing, vol. 50, no. 5. Society for Industrial and Applied Mathematics, pp. 1603–1626, 2021. ista: Czumaj A, Davies P, Parter M. 2021. Simple, deterministic, constant-round coloring in congested clique and MPC. SIAM Journal on Computing. 50(5), 1603–1626. mla: Czumaj, Artur, et al. “Simple, Deterministic, Constant-Round Coloring in Congested Clique and MPC.” SIAM Journal on Computing, vol. 50, no. 5, Society for Industrial and Applied Mathematics, 2021, pp. 1603–26, doi:10.1137/20m1366502. short: A. Czumaj, P. Davies, M. Parter, SIAM Journal on Computing 50 (2021) 1603–1626. date_created: 2024-04-03T07:53:22Z date_published: 2021-01-01T00:00:00Z date_updated: 2025-09-10T10:14:11Z day: '01' department: - _id: DaAl doi: 10.1137/20m1366502 ec_funded: 1 external_id: isi: - '000713008600004' fulldoi: https://doi.org/10.1137/20m1366502 intvolume: ' 50' isi: 1 issue: '5' keyword: - General Mathematics - General Computer Science language: - iso: eng month: '01' oa_version: None page: 1603-1626 project: - _id: 260C2330-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '754411' name: ISTplus - Postdoctoral Fellowships publication: SIAM Journal on Computing publication_identifier: eissn: - 1095-7111 issn: - 0097-5397 publication_status: published publisher: Society for Industrial and Applied Mathematics quality_controlled: '1' scopus_import: '1' status: public title: Simple, deterministic, constant-round coloring in congested clique and MPC type: journal_article user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345 volume: 50 year: '2021' ... --- _id: '15272' abstract: - lang: eng text: The assembly of neuronal circuits involves the migrations of neurons from their place of birth to their final location in the nervous system, as well as the coordinated growth and patterning of axons and dendrites. In screens for genes required for patterning of the nervous system, we identified the catp-8/P5A-ATPase as an important regulator of neural patterning. P5A-ATPases are part of the P-type ATPases, a family of proteins known to serve a conserved function as transporters of ions, lipids and polyamines in unicellular eukaryotes, plants, and humans. While the function of many P-type ATPases is relatively well understood, the function of P5A-ATPases in metazoans remained elusive. We show here, that the Caenorhabditis elegans ortholog catp-8/P5A-ATPase is required for defined aspects of nervous system development. Specifically, the catp-8/P5A-ATPase serves functions in shaping the elaborately sculpted dendritic trees of somatosensory PVD neurons. Moreover, catp-8/P5A-ATPase is required for axonal guidance and repulsion at the midline, as well as embryonic and postembryonic neuronal migrations. Interestingly, not all axons at the midline require catp-8/P5A-ATPase, although the axons run in the same fascicles and navigate the same space. Similarly, not all neuronal migrations require catp-8/P5A-ATPase. A CATP-8/P5A-ATPase reporter is localized to the ER in most, if not all, tissues and catp-8/P5A-ATPase can function both cell-autonomously and non-autonomously to regulate neuronal development. Genetic analyses establish that catp-8/P5A-ATPase can function in multiple pathways, including the Menorin pathway, previously shown to control dendritic patterning in PVD, and Wnt signaling, which functions to control neuronal migrations. Lastly, we show that catp-8/P5A-ATPase is required for localizing select transmembrane proteins necessary for dendrite morphogenesis. Collectively, our studies suggest that catp-8/P5A-ATPase serves diverse, yet specific, roles in different genetic pathways and may be involved in the regulation or localization of transmembrane and secreted proteins to specific subcellular compartments. article_number: e1009475 article_processing_charge: No article_type: original author: - first_name: Leo T. H. full_name: Tang, Leo T. H. last_name: Tang - first_name: Meera full_name: Trivedi, Meera last_name: Trivedi - first_name: Jenna full_name: Freund, Jenna last_name: Freund - first_name: Christopher J. full_name: Salazar, Christopher J. last_name: Salazar - first_name: Maisha full_name: Rahman, Maisha last_name: Rahman - first_name: Nelson full_name: Ramirez, Nelson id: 39831956-E4FE-11E9-85DE-0DC7E5697425 last_name: Ramirez - first_name: Garrett full_name: Lee, Garrett last_name: Lee - first_name: Yu full_name: Wang, Yu last_name: Wang - first_name: Barth D. full_name: Grant, Barth D. last_name: Grant - first_name: Hannes E. full_name: Bülow, Hannes E. last_name: Bülow citation: ama: Tang LTH, Trivedi M, Freund J, et al. The CATP-8/P5A-type ATPase functions in multiple pathways during neuronal patterning. PLOS Genetics. 2021;17(7). doi:10.1371/journal.pgen.1009475 apa: Tang, L. T. H., Trivedi, M., Freund, J., Salazar, C. J., Rahman, M., Ramirez, N., … Bülow, H. E. (2021). The CATP-8/P5A-type ATPase functions in multiple pathways during neuronal patterning. PLOS Genetics. Public Library of Science. https://doi.org/10.1371/journal.pgen.1009475 chicago: Tang, Leo T. H., Meera Trivedi, Jenna Freund, Christopher J. Salazar, Maisha Rahman, Nelson Ramirez, Garrett Lee, Yu Wang, Barth D. Grant, and Hannes E. Bülow. “The CATP-8/P5A-Type ATPase Functions in Multiple Pathways during Neuronal Patterning.” PLOS Genetics. Public Library of Science, 2021. https://doi.org/10.1371/journal.pgen.1009475. ieee: L. T. H. Tang et al., “The CATP-8/P5A-type ATPase functions in multiple pathways during neuronal patterning,” PLOS Genetics, vol. 17, no. 7. Public Library of Science, 2021. ista: Tang LTH, Trivedi M, Freund J, Salazar CJ, Rahman M, Ramirez N, Lee G, Wang Y, Grant BD, Bülow HE. 2021. The CATP-8/P5A-type ATPase functions in multiple pathways during neuronal patterning. PLOS Genetics. 17(7), e1009475. mla: Tang, Leo T. H., et al. “The CATP-8/P5A-Type ATPase Functions in Multiple Pathways during Neuronal Patterning.” PLOS Genetics, vol. 17, no. 7, e1009475, Public Library of Science, 2021, doi:10.1371/journal.pgen.1009475. short: L.T.H. Tang, M. Trivedi, J. Freund, C.J. Salazar, M. Rahman, N. Ramirez, G. Lee, Y. Wang, B.D. Grant, H.E. Bülow, PLOS Genetics 17 (2021). date_created: 2024-04-03T07:57:12Z date_published: 2021-07-01T00:00:00Z date_updated: 2024-04-10T08:57:16Z day: '01' ddc: - '570' department: - _id: MaDe doi: 10.1371/journal.pgen.1009475 external_id: pmid: - '34197450' file: - access_level: open_access checksum: 7352b195e4db6d404f702fe6ad8b55ad content_type: application/pdf creator: dernst date_created: 2024-04-10T08:53:43Z date_updated: 2024-04-10T08:53:43Z file_id: '15308' file_name: 2021_PlosGenetics_Tang.pdf file_size: 4224934 relation: main_file success: 1 file_date_updated: 2024-04-10T08:53:43Z fulldoi: https://doi.org/10.1371/journal.pgen.1009475 has_accepted_license: '1' intvolume: ' 17' issue: '7' keyword: - Cancer Research - Genetics (clinical) - Genetics - Molecular Biology - Ecology - Evolution - Behavior and Systematics language: - iso: eng month: '07' oa: 1 oa_version: Published Version pmid: 1 publication: PLOS Genetics publication_identifier: issn: - 1553-7404 publication_status: published publisher: Public Library of Science quality_controlled: '1' status: public title: The CATP-8/P5A-type ATPase functions in multiple pathways during neuronal patterning tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 17 year: '2021' ... --- _id: '15273' abstract: - lang: eng text: Synapses of glutamatergic mossy fibers (MFs) onto cerebellar unipolar brush cells (UBCs) generate slow excitatory (ON) or inhibitory (OFF) postsynaptic responses dependent on the complement of glutamate receptors expressed on the UBC’s large dendritic brush. Using mouse brain slice recording and computational modeling of synaptic transmission, we found that substantial glutamate is maintained in the UBC synaptic cleft, sufficient to modify spontaneous firing in OFF UBCs and tonically desensitize AMPARs of ON UBCs. The source of this ambient glutamate was spontaneous, spike-independent exocytosis from the MF terminal, and its level was dependent on activity of glutamate transporters EAAT1–2. Increasing levels of ambient glutamate shifted the polarity of evoked synaptic responses in ON UBCs and altered the phase of responses to in vivo-like synaptic activity. Unlike classical fast synapses, receptors at the UBC synapse are virtually always exposed to a significant level of glutamate, which varies in a graded manner during transmission. article_number: e63819 article_processing_charge: Yes article_type: original author: - first_name: Timothy S full_name: Balmer, Timothy S last_name: Balmer - first_name: Carolina full_name: Borges Merjane, Carolina id: 4305C450-F248-11E8-B48F-1D18A9856A87 last_name: Borges Merjane orcid: 0000-0003-0005-401X - first_name: Laurence O full_name: Trussell, Laurence O last_name: Trussell citation: ama: Balmer TS, Borges Merjane C, Trussell LO. Incomplete removal of extracellular glutamate controls synaptic transmission and integration at a cerebellar synapse. eLife. 2021;10. doi:10.7554/elife.63819 apa: Balmer, T. S., Borges Merjane, C., & Trussell, L. O. (2021). Incomplete removal of extracellular glutamate controls synaptic transmission and integration at a cerebellar synapse. ELife. eLife Sciences Publications. https://doi.org/10.7554/elife.63819 chicago: Balmer, Timothy S, Carolina Borges Merjane, and Laurence O Trussell. “Incomplete Removal of Extracellular Glutamate Controls Synaptic Transmission and Integration at a Cerebellar Synapse.” ELife. eLife Sciences Publications, 2021. https://doi.org/10.7554/elife.63819. ieee: T. S. Balmer, C. Borges Merjane, and L. O. Trussell, “Incomplete removal of extracellular glutamate controls synaptic transmission and integration at a cerebellar synapse,” eLife, vol. 10. eLife Sciences Publications, 2021. ista: Balmer TS, Borges Merjane C, Trussell LO. 2021. Incomplete removal of extracellular glutamate controls synaptic transmission and integration at a cerebellar synapse. eLife. 10, e63819. mla: Balmer, Timothy S., et al. “Incomplete Removal of Extracellular Glutamate Controls Synaptic Transmission and Integration at a Cerebellar Synapse.” ELife, vol. 10, e63819, eLife Sciences Publications, 2021, doi:10.7554/elife.63819. short: T.S. Balmer, C. Borges Merjane, L.O. Trussell, ELife 10 (2021). date_created: 2024-04-03T07:58:11Z date_published: 2021-02-22T00:00:00Z date_updated: 2024-04-09T11:15:01Z day: '22' ddc: - '570' department: - _id: PeJo doi: 10.7554/elife.63819 external_id: pmid: - '33616036' file: - access_level: open_access checksum: bbd4de2e54b7fbc11fba14f59e87fe3f content_type: application/pdf creator: dernst date_created: 2024-04-09T11:13:07Z date_updated: 2024-04-09T11:13:07Z file_id: '15307' file_name: 2021_eLife_Balmer.pdf file_size: 6997954 relation: main_file success: 1 file_date_updated: 2024-04-09T11:13:07Z fulldoi: https://doi.org/10.7554/elife.63819 has_accepted_license: '1' intvolume: ' 10' keyword: - General Immunology and Microbiology - General Biochemistry - Genetics and Molecular Biology - General Medicine - General Neuroscience language: - iso: eng month: '02' oa: 1 oa_version: Published Version pmid: 1 publication: eLife publication_identifier: issn: - 2050-084X publication_status: published publisher: eLife Sciences Publications quality_controlled: '1' status: public title: Incomplete removal of extracellular glutamate controls synaptic transmission and integration at a cerebellar synapse tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 10 year: '2021' ... --- _id: '15274' abstract: - lang: eng text: Copper (Cu) is a redox-active micronutrient that is both essential and toxic. Its cellular homeostasis is critical for supporting cuproprotein maturation while avoiding excessive oxidative stress. The Cu importer CcoA is the prototype of the widespread CalT subfamily of the MFS-type transporters. Hence, understanding its molecular mechanism of function is significant. Here, we show that CcoA undergoes a thiol:disulfide oxidoreduction cycle, which is important for its Cu import activity. article_number: e01567 article_processing_charge: No article_type: original author: - first_name: Bahia full_name: Khalfaoui-Hassani, Bahia last_name: Khalfaoui-Hassani - first_name: Petru Iulian full_name: Trasnea, Petru Iulian id: D560034C-10C4-11EA-ABF4-A4B43DDC885E last_name: Trasnea - first_name: Stefan full_name: Steimle, Stefan last_name: Steimle - first_name: Hans-Georg full_name: Koch, Hans-Georg last_name: Koch - first_name: Fevzi full_name: Daldal, Fevzi last_name: Daldal citation: ama: Khalfaoui-Hassani B, Trasnea PI, Steimle S, Koch H-G, Daldal F. Cysteine mutants of the major facilitator superfamily-type transporter CcoA provide insight into copper import. mBio. 2021;12(4). doi:10.1128/mbio.01567-21 apa: Khalfaoui-Hassani, B., Trasnea, P. I., Steimle, S., Koch, H.-G., & Daldal, F. (2021). Cysteine mutants of the major facilitator superfamily-type transporter CcoA provide insight into copper import. MBio. American Society for Microbiology. https://doi.org/10.1128/mbio.01567-21 chicago: Khalfaoui-Hassani, Bahia, Petru Iulian Trasnea, Stefan Steimle, Hans-Georg Koch, and Fevzi Daldal. “Cysteine Mutants of the Major Facilitator Superfamily-Type Transporter CcoA Provide Insight into Copper Import.” MBio. American Society for Microbiology, 2021. https://doi.org/10.1128/mbio.01567-21. ieee: B. Khalfaoui-Hassani, P. I. Trasnea, S. Steimle, H.-G. Koch, and F. Daldal, “Cysteine mutants of the major facilitator superfamily-type transporter CcoA provide insight into copper import,” mBio, vol. 12, no. 4. American Society for Microbiology, 2021. ista: Khalfaoui-Hassani B, Trasnea PI, Steimle S, Koch H-G, Daldal F. 2021. Cysteine mutants of the major facilitator superfamily-type transporter CcoA provide insight into copper import. mBio. 12(4), e01567. mla: Khalfaoui-Hassani, Bahia, et al. “Cysteine Mutants of the Major Facilitator Superfamily-Type Transporter CcoA Provide Insight into Copper Import.” MBio, vol. 12, no. 4, e01567, American Society for Microbiology, 2021, doi:10.1128/mbio.01567-21. short: B. Khalfaoui-Hassani, P.I. Trasnea, S. Steimle, H.-G. Koch, F. Daldal, MBio 12 (2021). date_created: 2024-04-03T07:59:04Z date_published: 2021-08-31T00:00:00Z date_updated: 2024-04-09T10:47:16Z day: '31' ddc: - '570' department: - _id: LeSa doi: 10.1128/mbio.01567-21 external_id: pmid: - '34281385' file: - access_level: open_access checksum: 2f6a57637cb3162eaeeb155a5b031e76 content_type: application/pdf creator: dernst date_created: 2024-04-09T10:45:11Z date_updated: 2024-04-09T10:45:11Z file_id: '15306' file_name: 2021_mBio_KhalfaouiHassani.pdf file_size: 3383398 relation: main_file success: 1 file_date_updated: 2024-04-09T10:45:11Z fulldoi: https://doi.org/10.1128/mbio.01567-21 has_accepted_license: '1' intvolume: ' 12' issue: '4' keyword: - Virology - Microbiology language: - iso: eng month: '08' oa: 1 oa_version: Published Version pmid: 1 publication: mBio publication_identifier: issn: - 2150-7511 publication_status: published publisher: American Society for Microbiology quality_controlled: '1' status: public title: Cysteine mutants of the major facilitator superfamily-type transporter CcoA provide insight into copper import tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 12 year: '2021' ...