---
_id: '15275'
abstract:
- lang: eng
  text: In 1916, Schur introduced the Ramsey number r(3; m), which is the minimum
    integer n > 1 such that for any m-coloring of the edges of the complete graph
    Kn, there is a monochromatic copy of K3. He showed that r(3; m) ≤ O(m!), and a
    simple construction demonstrates that r(3; m) ≥ 2Ω(m). An old conjecture of Erdős
    states that r(3; m) = 2Θ(m). In this note, we prove the conjecture for m-colorings
    with bounded VC-dimension, that is, for m-colorings with the property that the
    set system induced by the neighborhoods of the vertices with respect to each color
    class has bounded VC-dimension.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jacob
  full_name: Fox, Jacob
  last_name: Fox
- first_name: János
  full_name: Pach, János
  id: E62E3130-B088-11EA-B919-BF823C25FEA4
  last_name: Pach
- first_name: Andrew
  full_name: Suk, Andrew
  last_name: Suk
citation:
  ama: Fox J, Pach J, Suk A. Bounded VC-dimension implies the Schur-Erdős conjecture.
    <i>Combinatorica</i>. 2021;41(6):803-813. doi:<a href="https://doi.org/10.1007/s00493-021-4530-9">10.1007/s00493-021-4530-9</a>
  apa: Fox, J., Pach, J., &#38; Suk, A. (2021). Bounded VC-dimension implies the Schur-Erdős
    conjecture. <i>Combinatorica</i>. Springer Nature. <a href="https://doi.org/10.1007/s00493-021-4530-9">https://doi.org/10.1007/s00493-021-4530-9</a>
  chicago: Fox, Jacob, János Pach, and Andrew Suk. “Bounded VC-Dimension Implies the
    Schur-Erdős Conjecture.” <i>Combinatorica</i>. Springer Nature, 2021. <a href="https://doi.org/10.1007/s00493-021-4530-9">https://doi.org/10.1007/s00493-021-4530-9</a>.
  ieee: J. Fox, J. Pach, and A. Suk, “Bounded VC-dimension implies the Schur-Erdős
    conjecture,” <i>Combinatorica</i>, vol. 41, no. 6. Springer Nature, pp. 803–813,
    2021.
  ista: Fox J, Pach J, Suk A. 2021. Bounded VC-dimension implies the Schur-Erdős conjecture.
    Combinatorica. 41(6), 803–813.
  mla: Fox, Jacob, et al. “Bounded VC-Dimension Implies the Schur-Erdős Conjecture.”
    <i>Combinatorica</i>, vol. 41, no. 6, Springer Nature, 2021, pp. 803–13, doi:<a
    href="https://doi.org/10.1007/s00493-021-4530-9">10.1007/s00493-021-4530-9</a>.
  short: J. Fox, J. Pach, A. Suk, Combinatorica 41 (2021) 803–813.
date_created: 2024-04-03T07:59:57Z
date_published: 2021-11-20T00:00:00Z
date_updated: 2024-04-09T10:40:08Z
day: '20'
department:
- _id: HeEd
doi: 10.1007/s00493-021-4530-9
external_id:
  arxiv:
  - '1912.02342'
fulldoi: https://doi.org/10.1007/s00493-021-4530-9
intvolume: '        41'
issue: '6'
keyword:
- Computational Mathematics
- Discrete Mathematics and Combinatorics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.1912.02342
month: '11'
oa: 1
oa_version: Preprint
page: 803-813
publication: Combinatorica
publication_identifier:
  eissn:
  - 1439-6912
  issn:
  - 0209-9683
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Bounded VC-dimension implies the Schur-Erdős conjecture
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 41
year: '2021'
...
---
_id: '15276'
abstract:
- lang: eng
  text: Biotrophic plant pathogens secrete effector proteins to manipulate the host
    physiology. Effectors suppress defenses and induce an environment favorable to
    disease development. Sequence-based prediction of effector function is impeded
    by their rapid evolution rate. In the maize pathogen <jats:italic>Ustilago maydis</jats:italic>,
    effector-coding genes frequently organize in clusters. Here we describe the functional
    characterization of the <jats:italic>pleiades</jats:italic>, a cluster of ten
    effector genes, by analyzing the micro- and macroscopic phenotype of the cluster
    deletion and expressing these proteins <jats:italic>in planta</jats:italic>. Deletion
    of the <jats:italic>pleiades</jats:italic> leads to strongly impaired virulence
    and accumulation of reactive oxygen species (ROS) in infected tissue. Eight of
    the Pleiades suppress the production of ROS upon perception of pathogen associated
    molecular patterns (PAMPs). Although functionally redundant, the Pleiades target
    different host components. The paralogs Taygeta1 and Merope1 suppress ROS production
    in either the cytoplasm or nucleus, respectively. Merope1 targets and promotes
    the auto-ubiquitination activity of RFI2, a conserved family of E3 ligases that
    regulates the production of PAMP-triggered ROS burst in plants.
article_number: e1009641
article_processing_charge: Yes
article_type: original
author:
- first_name: Fernando
  full_name: Navarrete, Fernando
  last_name: Navarrete
- first_name: Nenad
  full_name: Grujic, Nenad
  last_name: Grujic
- first_name: Alexandra
  full_name: Stirnberg, Alexandra
  last_name: Stirnberg
- first_name: Indira
  full_name: Saado, Indira
  last_name: Saado
- first_name: David
  full_name: Aleksza, David
  last_name: Aleksza
- first_name: Michelle C
  full_name: Gallei, Michelle C
  id: 35A03822-F248-11E8-B48F-1D18A9856A87
  last_name: Gallei
  orcid: 0000-0003-1286-7368
- first_name: Hazem
  full_name: Adi, Hazem
  last_name: Adi
- first_name: André
  full_name: Alcântara, André
  last_name: Alcântara
- first_name: Mamoona
  full_name: Khan, Mamoona
  last_name: Khan
- first_name: Janos
  full_name: Bindics, Janos
  last_name: Bindics
- first_name: Marco
  full_name: Trujillo, Marco
  last_name: Trujillo
- first_name: Armin
  full_name: Djamei, Armin
  last_name: Djamei
citation:
  ama: Navarrete F, Grujic N, Stirnberg A, et al. The Pleiades are a cluster of fungal
    effectors that inhibit host defenses. <i>PLOS Pathogens</i>. 2021;17(6). doi:<a
    href="https://doi.org/10.1371/journal.ppat.1009641">10.1371/journal.ppat.1009641</a>
  apa: Navarrete, F., Grujic, N., Stirnberg, A., Saado, I., Aleksza, D., Gallei, M.
    C., … Djamei, A. (2021). The Pleiades are a cluster of fungal effectors that inhibit
    host defenses. <i>PLOS Pathogens</i>. Public Library of Science. <a href="https://doi.org/10.1371/journal.ppat.1009641">https://doi.org/10.1371/journal.ppat.1009641</a>
  chicago: Navarrete, Fernando, Nenad Grujic, Alexandra Stirnberg, Indira Saado, David
    Aleksza, Michelle C Gallei, Hazem Adi, et al. “The Pleiades Are a Cluster of Fungal
    Effectors That Inhibit Host Defenses.” <i>PLOS Pathogens</i>. Public Library of
    Science, 2021. <a href="https://doi.org/10.1371/journal.ppat.1009641">https://doi.org/10.1371/journal.ppat.1009641</a>.
  ieee: F. Navarrete <i>et al.</i>, “The Pleiades are a cluster of fungal effectors
    that inhibit host defenses,” <i>PLOS Pathogens</i>, vol. 17, no. 6. Public Library
    of Science, 2021.
  ista: Navarrete F, Grujic N, Stirnberg A, Saado I, Aleksza D, Gallei MC, Adi H,
    Alcântara A, Khan M, Bindics J, Trujillo M, Djamei A. 2021. The Pleiades are a
    cluster of fungal effectors that inhibit host defenses. PLOS Pathogens. 17(6),
    e1009641.
  mla: Navarrete, Fernando, et al. “The Pleiades Are a Cluster of Fungal Effectors
    That Inhibit Host Defenses.” <i>PLOS Pathogens</i>, vol. 17, no. 6, e1009641,
    Public Library of Science, 2021, doi:<a href="https://doi.org/10.1371/journal.ppat.1009641">10.1371/journal.ppat.1009641</a>.
  short: F. Navarrete, N. Grujic, A. Stirnberg, I. Saado, D. Aleksza, M.C. Gallei,
    H. Adi, A. Alcântara, M. Khan, J. Bindics, M. Trujillo, A. Djamei, PLOS Pathogens
    17 (2021).
date_created: 2024-04-03T08:00:34Z
date_published: 2021-06-24T00:00:00Z
date_updated: 2024-04-09T10:26:12Z
day: '24'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1371/journal.ppat.1009641
external_id:
  pmid:
  - '34166468'
file:
- access_level: open_access
  checksum: ab8428291a0c14607c4ea5656c029cff
  content_type: application/pdf
  creator: dernst
  date_created: 2024-04-09T10:24:43Z
  date_updated: 2024-04-09T10:24:43Z
  file_id: '15305'
  file_name: 2021_PlosPathogens_Navarrete.pdf
  file_size: 2616563
  relation: main_file
  success: 1
file_date_updated: 2024-04-09T10:24:43Z
fulldoi: https://doi.org/10.1371/journal.ppat.1009641
has_accepted_license: '1'
intvolume: '        17'
issue: '6'
keyword:
- Virology
- Genetics
- Molecular Biology
- Immunology
- Microbiology
- Parasitology
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
pmid: 1
publication: PLOS Pathogens
publication_identifier:
  issn:
  - 1553-7374
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
status: public
title: The Pleiades are a cluster of fungal effectors that inhibit host defenses
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 17
year: '2021'
...
---
_id: '15277'
abstract:
- lang: eng
  text: Alternative splicing generates multiple transcript and protein isoforms from
    a single gene and controls transcript intracellular localization and stability
    by coupling to mRNA export and nonsense-mediated mRNA decay (NMD). RNA interference
    (RNAi) is a potent mechanism to modulate gene expression. However, its interactions
    with alternative splicing are poorly understood. We used artificial microRNAs
    (amiRNAs, also termed shRNAmiR) to knockdown all splice variants of selected target
    genes in Arabidopsis thaliana. We found that splice variants, which vary by their
    protein-coding capacity, subcellular localization and sensitivity to NMD, are
    affected differentially by an amiRNA, although all of them contain the target
    site. Particular transcript isoforms escape amiRNA-mediated degradation due to
    their nuclear localization. The nuclear and NMD-sensitive isoforms mask RNAi action
    in alternatively spliced genes. Interestingly, Arabidopsis SPL genes, which undergo
    alternative splicing and are targets of miR156, are regulated in the same manner.
    Moreover, similar results were obtained in mammalian cells using siRNAs, indicating
    cross-kingdom conservation of these interactions among RNAi and splicing isoforms.
    Furthermore, we report that amiRNA can trigger artificial alternative splicing,
    thus expanding the RNAi functional repertoire. Our findings unveil novel interactions
    between different post-transcriptional processes in defining transcript fates
    and regulating gene expression.
article_processing_charge: No
article_type: original
author:
- first_name: Armin
  full_name: Fuchs, Armin
  last_name: Fuchs
- first_name: Stefan
  full_name: Riegler, Stefan
  last_name: Riegler
- first_name: Zahra
  full_name: Ayatollahi, Zahra
  last_name: Ayatollahi
- first_name: Nicola
  full_name: Cavallari, Nicola
  id: 457160E6-F248-11E8-B48F-1D18A9856A87
  last_name: Cavallari
- first_name: Luciana E
  full_name: Giono, Luciana E
  last_name: Giono
- first_name: Barbara A
  full_name: Nimeth, Barbara A
  last_name: Nimeth
- first_name: Krishna V
  full_name: Mutanwad, Krishna V
  last_name: Mutanwad
- first_name: Alois
  full_name: Schweighofer, Alois
  last_name: Schweighofer
- first_name: Doris
  full_name: Lucyshyn, Doris
  last_name: Lucyshyn
- first_name: Andrea
  full_name: Barta, Andrea
  last_name: Barta
- first_name: Ezequiel
  full_name: Petrillo, Ezequiel
  last_name: Petrillo
- first_name: Maria
  full_name: Kalyna, Maria
  last_name: Kalyna
citation:
  ama: 'Fuchs A, Riegler S, Ayatollahi Z, et al. Targeting alternative splicing by
    RNAi: From the differential impact on splice variants to triggering artificial
    pre-mRNA splicing. <i>Nucleic Acids Research</i>. 2021;49(2):1133-1151. doi:<a
    href="https://doi.org/10.1093/nar/gkaa1260">10.1093/nar/gkaa1260</a>'
  apa: 'Fuchs, A., Riegler, S., Ayatollahi, Z., Cavallari, N., Giono, L. E., Nimeth,
    B. A., … Kalyna, M. (2021). Targeting alternative splicing by RNAi: From the differential
    impact on splice variants to triggering artificial pre-mRNA splicing. <i>Nucleic
    Acids Research</i>. Oxford University Press. <a href="https://doi.org/10.1093/nar/gkaa1260">https://doi.org/10.1093/nar/gkaa1260</a>'
  chicago: 'Fuchs, Armin, Stefan Riegler, Zahra Ayatollahi, Nicola Cavallari, Luciana
    E Giono, Barbara A Nimeth, Krishna V Mutanwad, et al. “Targeting Alternative Splicing
    by RNAi: From the Differential Impact on Splice Variants to Triggering Artificial
    Pre-MRNA Splicing.” <i>Nucleic Acids Research</i>. Oxford University Press, 2021.
    <a href="https://doi.org/10.1093/nar/gkaa1260">https://doi.org/10.1093/nar/gkaa1260</a>.'
  ieee: 'A. Fuchs <i>et al.</i>, “Targeting alternative splicing by RNAi: From the
    differential impact on splice variants to triggering artificial pre-mRNA splicing,”
    <i>Nucleic Acids Research</i>, vol. 49, no. 2. Oxford University Press, pp. 1133–1151,
    2021.'
  ista: 'Fuchs A, Riegler S, Ayatollahi Z, Cavallari N, Giono LE, Nimeth BA, Mutanwad
    KV, Schweighofer A, Lucyshyn D, Barta A, Petrillo E, Kalyna M. 2021. Targeting
    alternative splicing by RNAi: From the differential impact on splice variants
    to triggering artificial pre-mRNA splicing. Nucleic Acids Research. 49(2), 1133–1151.'
  mla: 'Fuchs, Armin, et al. “Targeting Alternative Splicing by RNAi: From the Differential
    Impact on Splice Variants to Triggering Artificial Pre-MRNA Splicing.” <i>Nucleic
    Acids Research</i>, vol. 49, no. 2, Oxford University Press, 2021, pp. 1133–51,
    doi:<a href="https://doi.org/10.1093/nar/gkaa1260">10.1093/nar/gkaa1260</a>.'
  short: A. Fuchs, S. Riegler, Z. Ayatollahi, N. Cavallari, L.E. Giono, B.A. Nimeth,
    K.V. Mutanwad, A. Schweighofer, D. Lucyshyn, A. Barta, E. Petrillo, M. Kalyna,
    Nucleic Acids Research 49 (2021) 1133–1151.
date_created: 2024-04-03T08:02:09Z
date_published: 2021-01-25T00:00:00Z
date_updated: 2024-04-09T10:16:40Z
day: '25'
ddc:
- '570'
department:
- _id: EvBe
doi: 10.1093/nar/gkaa1260
external_id:
  pmid:
  - '33406240'
file:
- access_level: open_access
  checksum: d3c90660759a5d34ad43ba1def130462
  content_type: application/pdf
  creator: dernst
  date_created: 2024-04-09T10:14:39Z
  date_updated: 2024-04-09T10:14:39Z
  file_id: '15304'
  file_name: 2021_NucleicAcidsRes_Fuchs.pdf
  file_size: 6539791
  relation: main_file
  success: 1
file_date_updated: 2024-04-09T10:14:39Z
fulldoi: https://doi.org/10.1093/nar/gkaa1260
has_accepted_license: '1'
intvolume: '        49'
issue: '2'
keyword:
- Genetics
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 1133-1151
pmid: 1
publication: Nucleic Acids Research
publication_identifier:
  eissn:
  - 1362-4962
  issn:
  - 0305-1048
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
status: public
title: 'Targeting alternative splicing by RNAi: From the differential impact on splice
  variants to triggering artificial pre-mRNA splicing'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 49
year: '2021'
...
---
_id: '15278'
abstract:
- lang: eng
  text: ‘Dysbiosis’ of the adult gut microbiota, in response to challenges such as
    infection, altered diet, stress, and antibiotics treatment has been recently linked
    to pathological alteration of brain function and behavior. Moreover, gut microbiota
    composition constantly controls microglia maturation, as revealed by morphological
    observations and gene expression analysis. However, it is unclear whether microglia
    functional properties and crosstalk with neurons, known to shape and modulate
    synaptic development and function, are influenced by the gut microbiota. Here,
    we investigated how antibiotic-mediated alteration of the gut microbiota influences
    microglial and neuronal functions in adult mice hippocampus. Hippocampal microglia
    from adult mice treated with oral antibiotics exhibited increased microglia density,
    altered basal patrolling activity, and impaired process rearrangement in response
    to damage. Patch clamp recordings at CA3-CA1 synapses revealed that antibiotics
    treatment alters neuronal functions, reducing spontaneous postsynaptic glutamatergic
    currents and decreasing synaptic connectivity, without reducing dendritic spines
    density. Antibiotics treatment was unable to modulate synaptic function in CX3CR1-deficient
    mice, pointing to an involvement of microglia–neuron crosstalk through the CX3CL1/CX3CR1
    axis in the effect of dysbiosis on neuronal functions. Together, our findings
    show that antibiotic alteration of gut microbiota impairs synaptic efficacy, suggesting
    that CX3CL1/CX3CR1 signaling supporting microglia is a major player in in the
    gut–brain axis, and in particular in the gut microbiota-to-neuron communication
    pathway.
article_number: '2648'
article_processing_charge: Yes
article_type: original
author:
- first_name: Federica
  full_name: Cordella, Federica
  last_name: Cordella
- first_name: Caterina
  full_name: Sanchini, Caterina
  last_name: Sanchini
- first_name: Maria
  full_name: Rosito, Maria
  last_name: Rosito
- first_name: Laura
  full_name: Ferrucci, Laura
  last_name: Ferrucci
- first_name: Natalia
  full_name: Pediconi, Natalia
  last_name: Pediconi
- first_name: Barbara
  full_name: Cortese, Barbara
  last_name: Cortese
- first_name: Francesca
  full_name: Guerrieri, Francesca
  last_name: Guerrieri
- first_name: Giuseppe Rubens
  full_name: Pascucci, Giuseppe Rubens
  last_name: Pascucci
- first_name: Fabrizio
  full_name: Antonangeli, Fabrizio
  last_name: Antonangeli
- first_name: Giovanna
  full_name: Peruzzi, Giovanna
  last_name: Peruzzi
- first_name: Maria
  full_name: Giubettini, Maria
  last_name: Giubettini
- first_name: Bernadette
  full_name: Basilico, Bernadette
  id: 36035796-5ACA-11E9-A75E-7AF2E5697425
  last_name: Basilico
  orcid: 0000-0003-1843-3173
- first_name: Francesca
  full_name: Pagani, Francesca
  last_name: Pagani
- first_name: Alfonso
  full_name: Grimaldi, Alfonso
  last_name: Grimaldi
- first_name: Giuseppina
  full_name: D’Alessandro, Giuseppina
  last_name: D’Alessandro
- first_name: Cristina
  full_name: Limatola, Cristina
  last_name: Limatola
- first_name: Davide
  full_name: Ragozzino, Davide
  last_name: Ragozzino
- first_name: Silvia
  full_name: Di Angelantonio, Silvia
  last_name: Di Angelantonio
citation:
  ama: Cordella F, Sanchini C, Rosito M, et al. Antibiotics treatment modulates microglia–synapses
    interaction. <i>Cells</i>. 2021;10(10). doi:<a href="https://doi.org/10.3390/cells10102648">10.3390/cells10102648</a>
  apa: Cordella, F., Sanchini, C., Rosito, M., Ferrucci, L., Pediconi, N., Cortese,
    B., … Di Angelantonio, S. (2021). Antibiotics treatment modulates microglia–synapses
    interaction. <i>Cells</i>. MDPI. <a href="https://doi.org/10.3390/cells10102648">https://doi.org/10.3390/cells10102648</a>
  chicago: Cordella, Federica, Caterina Sanchini, Maria Rosito, Laura Ferrucci, Natalia
    Pediconi, Barbara Cortese, Francesca Guerrieri, et al. “Antibiotics Treatment
    Modulates Microglia–Synapses Interaction.” <i>Cells</i>. MDPI, 2021. <a href="https://doi.org/10.3390/cells10102648">https://doi.org/10.3390/cells10102648</a>.
  ieee: F. Cordella <i>et al.</i>, “Antibiotics treatment modulates microglia–synapses
    interaction,” <i>Cells</i>, vol. 10, no. 10. MDPI, 2021.
  ista: Cordella F, Sanchini C, Rosito M, Ferrucci L, Pediconi N, Cortese B, Guerrieri
    F, Pascucci GR, Antonangeli F, Peruzzi G, Giubettini M, Basilico B, Pagani F,
    Grimaldi A, D’Alessandro G, Limatola C, Ragozzino D, Di Angelantonio S. 2021.
    Antibiotics treatment modulates microglia–synapses interaction. Cells. 10(10),
    2648.
  mla: Cordella, Federica, et al. “Antibiotics Treatment Modulates Microglia–Synapses
    Interaction.” <i>Cells</i>, vol. 10, no. 10, 2648, MDPI, 2021, doi:<a href="https://doi.org/10.3390/cells10102648">10.3390/cells10102648</a>.
  short: F. Cordella, C. Sanchini, M. Rosito, L. Ferrucci, N. Pediconi, B. Cortese,
    F. Guerrieri, G.R. Pascucci, F. Antonangeli, G. Peruzzi, M. Giubettini, B. Basilico,
    F. Pagani, A. Grimaldi, G. D’Alessandro, C. Limatola, D. Ragozzino, S. Di Angelantonio,
    Cells 10 (2021).
date_created: 2024-04-03T08:02:52Z
date_published: 2021-10-04T00:00:00Z
date_updated: 2024-04-09T08:53:23Z
day: '04'
ddc:
- '610'
department:
- _id: GaNo
doi: 10.3390/cells10102648
external_id:
  pmid:
  - '34685628'
file:
- access_level: open_access
  checksum: 1a3b251ce82e2b9474b852d2abe5bb03
  content_type: application/pdf
  creator: dernst
  date_created: 2024-04-09T08:51:22Z
  date_updated: 2024-04-09T08:51:22Z
  file_id: '15303'
  file_name: 2021_Cells_Cordella.pdf
  file_size: 2196672
  relation: main_file
  success: 1
file_date_updated: 2024-04-09T08:51:22Z
fulldoi: https://doi.org/10.3390/cells10102648
has_accepted_license: '1'
intvolume: '        10'
issue: '10'
keyword:
- General Medicine
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
pmid: 1
publication: Cells
publication_identifier:
  issn:
  - 2073-4409
publication_status: published
publisher: MDPI
quality_controlled: '1'
status: public
title: Antibiotics treatment modulates microglia–synapses interaction
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 10
year: '2021'
...
---
_id: '15283'
article_processing_charge: No
article_type: original
author:
- first_name: William
  full_name: Nicolas, William
  last_name: Nicolas
- first_name: Florian
  full_name: Fäßler, Florian
  id: 404F5528-F248-11E8-B48F-1D18A9856A87
  last_name: Fäßler
  orcid: 0000-0001-7149-769X
- first_name: Elliot
  full_name: Meyerowitz, Elliot
  last_name: Meyerowitz
- first_name: Grant
  full_name: Jensen, Grant
  last_name: Jensen
citation:
  ama: Nicolas W, Fäßler F, Meyerowitz E, Jensen G. Peaking into the plant cell wall
    using cryo-FIB milling and electron cryo-tomography. <i>Microscopy and Microanalysis</i>.
    2021;27(S1):3024-3026. doi:<a href="https://doi.org/10.1017/s1431927621010503">10.1017/s1431927621010503</a>
  apa: Nicolas, W., Fäßler, F., Meyerowitz, E., &#38; Jensen, G. (2021). Peaking into
    the plant cell wall using cryo-FIB milling and electron cryo-tomography. <i>Microscopy
    and Microanalysis</i>. Oxford University Press. <a href="https://doi.org/10.1017/s1431927621010503">https://doi.org/10.1017/s1431927621010503</a>
  chicago: Nicolas, William, Florian Fäßler, Elliot Meyerowitz, and Grant Jensen.
    “Peaking into the Plant Cell Wall Using Cryo-FIB Milling and Electron Cryo-Tomography.”
    <i>Microscopy and Microanalysis</i>. Oxford University Press, 2021. <a href="https://doi.org/10.1017/s1431927621010503">https://doi.org/10.1017/s1431927621010503</a>.
  ieee: W. Nicolas, F. Fäßler, E. Meyerowitz, and G. Jensen, “Peaking into the plant
    cell wall using cryo-FIB milling and electron cryo-tomography,” <i>Microscopy
    and Microanalysis</i>, vol. 27, no. S1. Oxford University Press, pp. 3024–3026,
    2021.
  ista: Nicolas W, Fäßler F, Meyerowitz E, Jensen G. 2021. Peaking into the plant
    cell wall using cryo-FIB milling and electron cryo-tomography. Microscopy and
    Microanalysis. 27(S1), 3024–3026.
  mla: Nicolas, William, et al. “Peaking into the Plant Cell Wall Using Cryo-FIB Milling
    and Electron Cryo-Tomography.” <i>Microscopy and Microanalysis</i>, vol. 27, no.
    S1, Oxford University Press, 2021, pp. 3024–26, doi:<a href="https://doi.org/10.1017/s1431927621010503">10.1017/s1431927621010503</a>.
  short: W. Nicolas, F. Fäßler, E. Meyerowitz, G. Jensen, Microscopy and Microanalysis
    27 (2021) 3024–3026.
date_created: 2024-04-03T08:57:23Z
date_published: 2021-08-01T00:00:00Z
date_updated: 2024-04-09T07:55:56Z
day: '01'
department:
- _id: FlSc
doi: 10.1017/s1431927621010503
fulldoi: https://doi.org/10.1017/s1431927621010503
intvolume: '        27'
issue: S1
keyword:
- Instrumentation
language:
- iso: eng
month: '08'
oa_version: None
page: 3024-3026
publication: Microscopy and Microanalysis
publication_identifier:
  eissn:
  - 1435-8115
  issn:
  - 1431-9276
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
status: public
title: Peaking into the plant cell wall using cryo-FIB milling and electron cryo-tomography
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 27
year: '2021'
...
---
_id: '15284'
abstract:
- lang: eng
  text: "RevTerm is a static analysis tool for proving non-termination of integer
    C programs (possibly with non-determinism). RevTerm is an implementation of our
    method for non-termination proving presented in the paper “Proving Non-termination
    by Program Reversal”.\r\n\r\n"
article_processing_charge: No
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Ehsan Kafshdar
  full_name: Goharshady, Ehsan Kafshdar
  last_name: Goharshady
- first_name: Petr
  full_name: Novotný, Petr
  id: 3CC3B868-F248-11E8-B48F-1D18A9856A87
  last_name: Novotný
- first_name: Dorde
  full_name: Zikelic, Dorde
  id: 294AA7A6-F248-11E8-B48F-1D18A9856A87
  last_name: Zikelic
  orcid: 0000-0002-4681-1699
citation:
  ama: Chatterjee K, Goharshady EK, Novotný P, Zikelic D. RevTerm. 2021. doi:<a href="https://doi.org/10.1145/3410304">10.1145/3410304</a>
  apa: Chatterjee, K., Goharshady, E. K., Novotný, P., &#38; Zikelic, D. (2021). RevTerm.
    Association for Computing Machinery. <a href="https://doi.org/10.1145/3410304">https://doi.org/10.1145/3410304</a>
  chicago: Chatterjee, Krishnendu, Ehsan Kafshdar Goharshady, Petr Novotný, and Dorde
    Zikelic. “RevTerm.” Association for Computing Machinery, 2021. <a href="https://doi.org/10.1145/3410304">https://doi.org/10.1145/3410304</a>.
  ieee: K. Chatterjee, E. K. Goharshady, P. Novotný, and D. Zikelic, “RevTerm.” Association
    for Computing Machinery, 2021.
  ista: Chatterjee K, Goharshady EK, Novotný P, Zikelic D. 2021. RevTerm, Association
    for Computing Machinery, <a href="https://doi.org/10.1145/3410304">10.1145/3410304</a>.
  mla: Chatterjee, Krishnendu, et al. <i>RevTerm</i>. Association for Computing Machinery,
    2021, doi:<a href="https://doi.org/10.1145/3410304">10.1145/3410304</a>.
  short: K. Chatterjee, E.K. Goharshady, P. Novotný, D. Zikelic, (2021).
corr_author: '1'
date_created: 2024-04-03T09:00:42Z
date_published: 2021-06-01T00:00:00Z
date_updated: 2025-04-15T06:25:30Z
day: '01'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.1145/3410304
fulldoi: https://doi.org/10.1145/3410304
has_accepted_license: '1'
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1145/3410304
month: '06'
oa: 1
oa_version: Published Version
publisher: Association for Computing Machinery
related_material:
  record:
  - id: '9644'
    relation: used_in_publication
    status: public
status: public
title: RevTerm
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
OA_place: publisher
_id: '10007'
abstract:
- lang: eng
  text: The present thesis is concerned with the derivation of weak-strong uniqueness
    principles for curvature driven interface evolution problems not satisfying a
    comparison principle. The specific examples being treated are two-phase Navier-Stokes
    flow with surface tension, modeling the evolution of two incompressible, viscous
    and immiscible fluids separated by a sharp interface, and multiphase mean curvature
    flow, which serves as an idealized model for the motion of grain boundaries in
    an annealing polycrystalline material. Our main results - obtained in joint works
    with Julian Fischer, Tim Laux and Theresa M. Simon - state that prior to the formation
    of geometric singularities due to topology changes, the weak solution concept
    of Abels (Interfaces Free Bound. 9, 2007) to two-phase Navier-Stokes flow with
    surface tension and the weak solution concept of Laux and Otto (Calc. Var. Partial
    Differential Equations 55, 2016) to multiphase mean curvature flow (for networks
    in R^2 or double bubbles in R^3) represents the unique solution to these interface
    evolution problems within the class of classical solutions, respectively. To the
    best of the author's knowledge, for interface evolution problems not admitting
    a geometric comparison principle the derivation of a weak-strong uniqueness principle
    represented an open problem, so that the works contained in the present thesis
    constitute the first positive results in this direction. The key ingredient of
    our approach consists of the introduction of a novel concept of relative entropies
    for a class of curvature driven interface evolution problems, for which the associated
    energy contains an interfacial contribution being proportional to the surface
    area of the evolving (network of) interface(s). The interfacial part of the relative
    entropy gives sufficient control on the interface error between a weak and a classical
    solution, and its time evolution can be computed, at least in principle, for any
    energy dissipating weak solution concept. A resulting stability estimate for the
    relative entropy essentially entails the above mentioned weak-strong uniqueness
    principles. The present thesis contains a detailed introduction to our relative
    entropy approach, which in particular highlights potential applications to other
    problems in curvature driven interface evolution not treated in this thesis.
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Sebastian
  full_name: Hensel, Sebastian
  id: 4D23B7DA-F248-11E8-B48F-1D18A9856A87
  last_name: Hensel
  orcid: 0000-0001-7252-8072
citation:
  ama: 'Hensel S. Curvature driven interface evolution: Uniqueness properties of weak
    solution concepts. 2021. doi:<a href="https://doi.org/10.15479/at:ista:10007">10.15479/at:ista:10007</a>'
  apa: 'Hensel, S. (2021). <i>Curvature driven interface evolution: Uniqueness properties
    of weak solution concepts</i>. Institute of Science and Technology Austria. <a
    href="https://doi.org/10.15479/at:ista:10007">https://doi.org/10.15479/at:ista:10007</a>'
  chicago: 'Hensel, Sebastian. “Curvature Driven Interface Evolution: Uniqueness Properties
    of Weak Solution Concepts.” Institute of Science and Technology Austria, 2021.
    <a href="https://doi.org/10.15479/at:ista:10007">https://doi.org/10.15479/at:ista:10007</a>.'
  ieee: 'S. Hensel, “Curvature driven interface evolution: Uniqueness properties of
    weak solution concepts,” Institute of Science and Technology Austria, 2021.'
  ista: 'Hensel S. 2021. Curvature driven interface evolution: Uniqueness properties
    of weak solution concepts. Institute of Science and Technology Austria.'
  mla: 'Hensel, Sebastian. <i>Curvature Driven Interface Evolution: Uniqueness Properties
    of Weak Solution Concepts</i>. Institute of Science and Technology Austria, 2021,
    doi:<a href="https://doi.org/10.15479/at:ista:10007">10.15479/at:ista:10007</a>.'
  short: 'S. Hensel, Curvature Driven Interface Evolution: Uniqueness Properties of
    Weak Solution Concepts, Institute of Science and Technology Austria, 2021.'
corr_author: '1'
date_created: 2021-09-13T11:12:34Z
date_published: 2021-09-14T00:00:00Z
date_updated: 2026-04-08T07:01:01Z
day: '14'
ddc:
- '515'
degree_awarded: PhD
department:
- _id: GradSch
- _id: JuFi
doi: 10.15479/at:ista:10007
ec_funded: 1
file:
- access_level: closed
  checksum: c8475faaf0b680b4971f638f1db16347
  content_type: application/x-zip-compressed
  creator: shensel
  date_created: 2021-09-13T11:03:24Z
  date_updated: 2021-09-15T14:37:30Z
  file_id: '10008'
  file_name: thesis_final_Hensel.zip
  file_size: 15022154
  relation: source_file
- access_level: open_access
  checksum: 1a609937aa5275452822f45f2da17f07
  content_type: application/pdf
  creator: shensel
  date_created: 2021-09-13T14:18:56Z
  date_updated: 2021-09-14T09:52:47Z
  file_id: '10014'
  file_name: thesis_final_Hensel.pdf
  file_size: 6583638
  relation: main_file
file_date_updated: 2021-09-15T14:37:30Z
fulldoi: https://doi.org/10.15479/at:ista:10007
has_accepted_license: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: '300'
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
- _id: 0aa76401-070f-11eb-9043-b5bb049fa26d
  call_identifier: H2020
  grant_number: '948819'
  name: Bridging Scales in Random Materials
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '10012'
    relation: part_of_dissertation
    status: public
  - id: '10013'
    relation: part_of_dissertation
    status: public
  - id: '7489'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Julian L
  full_name: Fischer, Julian L
  id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87
  last_name: Fischer
  orcid: 0000-0002-0479-558X
title: 'Curvature driven interface evolution: Uniqueness properties of weak solution
  concepts'
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2021'
...
---
_id: '10013'
abstract:
- lang: eng
  text: We derive a weak-strong uniqueness principle for BV solutions to multiphase
    mean curvature flow of triple line clusters in three dimensions. Our proof is
    based on the explicit construction of a gradient-flow calibration in the sense
    of the recent work of Fischer et al. [arXiv:2003.05478] for any such cluster.
    This extends the two-dimensional construction to the three-dimensional case of
    surfaces meeting along triple junctions.
acknowledgement: This project has received funding from the European Research Council
  (ERC) under the European Union’s Horizon 2020 research and innovation programme
  (grant agreement No 948819), and from the Deutsche Forschungsgemeinschaft (DFG,
  German Research Foundation) under Germany’s Excellence Strategy – EXC-2047/1 – 390685813.
article_number: '2108.01733'
article_processing_charge: No
arxiv: 1
author:
- first_name: Sebastian
  full_name: Hensel, Sebastian
  id: 4D23B7DA-F248-11E8-B48F-1D18A9856A87
  last_name: Hensel
  orcid: 0000-0001-7252-8072
- first_name: Tim
  full_name: Laux, Tim
  last_name: Laux
citation:
  ama: Hensel S, Laux T. Weak-strong uniqueness for the mean curvature flow of double
    bubbles. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.2108.01733">10.48550/arXiv.2108.01733</a>
  apa: Hensel, S., &#38; Laux, T. (n.d.). Weak-strong uniqueness for the mean curvature
    flow of double bubbles. <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2108.01733">https://doi.org/10.48550/arXiv.2108.01733</a>
  chicago: Hensel, Sebastian, and Tim Laux. “Weak-Strong Uniqueness for the Mean Curvature
    Flow of Double Bubbles.” <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/arXiv.2108.01733">https://doi.org/10.48550/arXiv.2108.01733</a>.
  ieee: S. Hensel and T. Laux, “Weak-strong uniqueness for the mean curvature flow
    of double bubbles,” <i>arXiv</i>. .
  ista: Hensel S, Laux T. Weak-strong uniqueness for the mean curvature flow of double
    bubbles. arXiv, 2108.01733.
  mla: Hensel, Sebastian, and Tim Laux. “Weak-Strong Uniqueness for the Mean Curvature
    Flow of Double Bubbles.” <i>ArXiv</i>, 2108.01733, doi:<a href="https://doi.org/10.48550/arXiv.2108.01733">10.48550/arXiv.2108.01733</a>.
  short: S. Hensel, T. Laux, ArXiv (n.d.).
corr_author: '1'
date_created: 2021-09-13T12:17:11Z
date_published: 2021-08-03T00:00:00Z
date_updated: 2026-04-08T07:01:01Z
day: '03'
department:
- _id: JuFi
doi: 10.48550/arXiv.2108.01733
ec_funded: 1
external_id:
  arxiv:
  - '2108.01733'
fulldoi: https://doi.org/10.48550/arXiv.2108.01733
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2108.01733
month: '08'
oa: 1
oa_version: Preprint
project:
- _id: 0aa76401-070f-11eb-9043-b5bb049fa26d
  call_identifier: H2020
  grant_number: '948819'
  name: Bridging Scales in Random Materials
publication: arXiv
publication_status: draft
related_material:
  record:
  - id: '13043'
    relation: later_version
    status: public
  - id: '10007'
    relation: dissertation_contains
    status: public
status: public
title: Weak-strong uniqueness for the mean curvature flow of double bubbles
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '10024'
abstract:
- lang: eng
  text: In this paper, we introduce a random environment for the exclusion process
    in  obtained by assigning a maximal occupancy to each site. This maximal occupancy
    is allowed to randomly vary among sites, and partial exclusion occurs. Under the
    assumption of ergodicity under translation and uniform ellipticity of the environment,
    we derive a quenched hydrodynamic limit in path space by strengthening the mild
    solution approach initiated in Nagy (2002) and Faggionato (2007). To this purpose,
    we prove, employing the technology developed for the random conductance model,
    a homogenization result in the form of an arbitrary starting point quenched invariance
    principle for a single particle in the same environment, which is a result of
    independent interest. The self-duality property of the partial exclusion process
    allows us to transfer this homogenization result to the particle system and, then,
    apply the tightness criterion in Redig et al. (2020).
acknowledgement: The authors would like to thank Marek Biskup and Alberto Chiarini
  for useful suggestions and  Cristian  Giardina,  Frank  den  Hollander  and  Shubhamoy  Nandan  for  inspiring  discussions.  S.F.  acknowledges  Simona  Villa  for  her  help  in  creating  the  picture.  Furthermore,
  the  authors  thank  two  anonymous  referees  for  the  careful  reading  of  the  manuscript.  S.F.
  acknowledges  financial  support  from  NWO,  The  Netherlands  via  the  grant  TOP1.17.019.
  F.S.  acknowledges  financial  support  from  NWO  via  the  TOP1  grant  613.001.552  as  well  as
  funding from the European Union’s Horizon 2020 research and innovation programme
  under the Marie-Skłodowska-Curie grant agreement No. 754411.
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Simone
  full_name: Floreani, Simone
  last_name: Floreani
- first_name: Frank
  full_name: Redig, Frank
  last_name: Redig
- first_name: Federico
  full_name: Sau, Federico
  id: E1836206-9F16-11E9-8814-AEFDE5697425
  last_name: Sau
citation:
  ama: Floreani S, Redig F, Sau F. Hydrodynamics for the partial exclusion process
    in random environment. <i>Stochastic Processes and their Applications</i>. 2021;142:124-158.
    doi:<a href="https://doi.org/10.1016/j.spa.2021.08.006">10.1016/j.spa.2021.08.006</a>
  apa: Floreani, S., Redig, F., &#38; Sau, F. (2021). Hydrodynamics for the partial
    exclusion process in random environment. <i>Stochastic Processes and Their Applications</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.spa.2021.08.006">https://doi.org/10.1016/j.spa.2021.08.006</a>
  chicago: Floreani, Simone, Frank Redig, and Federico Sau. “Hydrodynamics for the
    Partial Exclusion Process in Random Environment.” <i>Stochastic Processes and
    Their Applications</i>. Elsevier, 2021. <a href="https://doi.org/10.1016/j.spa.2021.08.006">https://doi.org/10.1016/j.spa.2021.08.006</a>.
  ieee: S. Floreani, F. Redig, and F. Sau, “Hydrodynamics for the partial exclusion
    process in random environment,” <i>Stochastic Processes and their Applications</i>,
    vol. 142. Elsevier, pp. 124–158, 2021.
  ista: Floreani S, Redig F, Sau F. 2021. Hydrodynamics for the partial exclusion
    process in random environment. Stochastic Processes and their Applications. 142,
    124–158.
  mla: Floreani, Simone, et al. “Hydrodynamics for the Partial Exclusion Process in
    Random Environment.” <i>Stochastic Processes and Their Applications</i>, vol.
    142, Elsevier, 2021, pp. 124–58, doi:<a href="https://doi.org/10.1016/j.spa.2021.08.006">10.1016/j.spa.2021.08.006</a>.
  short: S. Floreani, F. Redig, F. Sau, Stochastic Processes and Their Applications
    142 (2021) 124–158.
date_created: 2021-09-19T22:01:25Z
date_published: 2021-08-27T00:00:00Z
date_updated: 2025-04-14T07:43:46Z
day: '27'
ddc:
- '519'
department:
- _id: JaMa
doi: 10.1016/j.spa.2021.08.006
ec_funded: 1
external_id:
  arxiv:
  - '1911.12564'
  isi:
  - '000697748500005'
file:
- access_level: open_access
  checksum: 56768c553d7218ee5714902ffec90ec4
  content_type: application/pdf
  creator: dernst
  date_created: 2022-05-13T07:55:50Z
  date_updated: 2022-05-13T07:55:50Z
  file_id: '11370'
  file_name: 2021_StochasticProcessesAppl_Floreani.pdf
  file_size: 2115791
  relation: main_file
  success: 1
file_date_updated: 2022-05-13T07:55:50Z
fulldoi: https://doi.org/10.1016/j.spa.2021.08.006
has_accepted_license: '1'
intvolume: '       142'
isi: 1
keyword:
- hydrodynamic limit
- random environment
- random conductance model
- arbitrary starting point quenched invariance principle
- duality
- mild solution
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 124-158
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Stochastic Processes and their Applications
publication_identifier:
  issn:
  - 0304-4149
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Hydrodynamics for the partial exclusion process in random environment
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 142
year: '2021'
...
---
_id: '10025'
abstract:
- lang: eng
  text: Ferromagnetism is most common in transition metal compounds but may also arise
    in low-density two-dimensional electron systems, with signatures observed in silicon,
    III-V semiconductor systems, and graphene moiré heterostructures. Here we show
    that gate-tuned van Hove singularities in rhombohedral trilayer graphene drive
    the spontaneous ferromagnetic polarization of the electron system into one or
    more spin- and valley flavors. Using capacitance measurements on graphite-gated
    van der Waals heterostructures, we find a cascade of density- and electronic displacement
    field tuned phase transitions marked by negative electronic compressibility. The
    transitions define the boundaries between phases where quantum oscillations have
    either four-fold, two-fold, or one-fold degeneracy, associated with a spin and
    valley degenerate normal metal, spin-polarized `half-metal', and spin and valley
    polarized `quarter metal', respectively. For electron doping, the salient features
    are well captured by a phenomenological Stoner model with a valley-anisotropic
    Hund's coupling, likely arising from interactions at the lattice scale. For hole
    filling, we observe a richer phase diagram featuring a delicate interplay of broken
    symmetries and transitions in the Fermi surface topology. Finally, by rotational
    alignment of a hexagonal boron nitride substrate to induce a moiré superlattice,
    we find that the superlattice perturbs the preexisting isospin order only weakly,
    leaving the basic phase diagram intact while catalyzing the formation of topologically
    nontrivial gapped states whenever itinerant half- or quarter metal states occur
    at half- or quarter superlattice band filling. Our results show that rhombohedral
    trilayer graphene is an ideal platform for well-controlled tests of many-body
    theory and reveal magnetism in moiré materials to be fundamentally itinerant in
    nature.
acknowledgement: "The authors acknowledge discussions with A. Macdonald, L. Fu, F.
  Wang and M. Zaletel. AFY acknowledges support of the National Science Foundation
  under DMR1654186, and the Gordon and Betty Moore Foundation under award GBMF9471.
  The authors acknowledge the use of the research facilities within the California
  NanoSystems Institute, supported by the University of California, Santa Barbara
  and the University of California, Office of the President.\r\nK.W. and T.T. acknowledge
  support from the Elemental Strategy Initiative conducted by the MEXT, Japan, Grant
  Number JPMXP0112101001 and JSPS KAKENHI, Grant Number JP20H00354. EB and TH were
  supported by the European Research Council (ERC) under grant HQMAT (Grant Agreement
  No. 817799). A.G. acknowledges support by the European Unions Horizon 2020 research
  and innovation program under the Marie Sklodowska-Curie Grant Agreement\r\nNo. 754411.\r\n"
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Haoxin
  full_name: Zhou, Haoxin
  last_name: Zhou
- first_name: Tian
  full_name: Xie, Tian
  last_name: Xie
- first_name: Areg
  full_name: Ghazaryan, Areg
  id: 4AF46FD6-F248-11E8-B48F-1D18A9856A87
  last_name: Ghazaryan
  orcid: 0000-0001-9666-3543
- first_name: Tobias
  full_name: Holder, Tobias
  last_name: Holder
- first_name: James R.
  full_name: Ehrets, James R.
  last_name: Ehrets
- first_name: Eric M.
  full_name: Spanton, Eric M.
  last_name: Spanton
- first_name: Takashi
  full_name: Taniguchi, Takashi
  last_name: Taniguchi
- first_name: Kenji
  full_name: Watanabe, Kenji
  last_name: Watanabe
- first_name: Erez
  full_name: Berg, Erez
  last_name: Berg
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
- first_name: Andrea F.
  full_name: Young, Andrea F.
  last_name: Young
citation:
  ama: Zhou H, Xie T, Ghazaryan A, et al. Half and quarter metals in rhombohedral
    trilayer graphene. <i>Nature</i>. 2021. doi:<a href="https://doi.org/10.1038/s41586-021-03938-w">10.1038/s41586-021-03938-w</a>
  apa: Zhou, H., Xie, T., Ghazaryan, A., Holder, T., Ehrets, J. R., Spanton, E. M.,
    … Young, A. F. (2021). Half and quarter metals in rhombohedral trilayer graphene.
    <i>Nature</i>. Springer Nature. <a href="https://doi.org/10.1038/s41586-021-03938-w">https://doi.org/10.1038/s41586-021-03938-w</a>
  chicago: Zhou, Haoxin, Tian Xie, Areg Ghazaryan, Tobias Holder, James R. Ehrets,
    Eric M. Spanton, Takashi Taniguchi, et al. “Half and Quarter Metals in Rhombohedral
    Trilayer Graphene.” <i>Nature</i>. Springer Nature, 2021. <a href="https://doi.org/10.1038/s41586-021-03938-w">https://doi.org/10.1038/s41586-021-03938-w</a>.
  ieee: H. Zhou <i>et al.</i>, “Half and quarter metals in rhombohedral trilayer graphene,”
    <i>Nature</i>. Springer Nature, 2021.
  ista: Zhou H, Xie T, Ghazaryan A, Holder T, Ehrets JR, Spanton EM, Taniguchi T,
    Watanabe K, Berg E, Serbyn M, Young AF. 2021. Half and quarter metals in rhombohedral
    trilayer graphene. Nature.
  mla: Zhou, Haoxin, et al. “Half and Quarter Metals in Rhombohedral Trilayer Graphene.”
    <i>Nature</i>, Springer Nature, 2021, doi:<a href="https://doi.org/10.1038/s41586-021-03938-w">10.1038/s41586-021-03938-w</a>.
  short: H. Zhou, T. Xie, A. Ghazaryan, T. Holder, J.R. Ehrets, E.M. Spanton, T. Taniguchi,
    K. Watanabe, E. Berg, M. Serbyn, A.F. Young, Nature (2021).
date_created: 2021-09-19T22:01:25Z
date_published: 2021-09-01T00:00:00Z
date_updated: 2025-04-14T07:43:46Z
day: '01'
department:
- _id: MaSe
- _id: MiLe
doi: 10.1038/s41586-021-03938-w
ec_funded: 1
external_id:
  arxiv:
  - '2104.00653'
  isi:
  - '000706977400002'
fulldoi: https://doi.org/10.1038/s41586-021-03938-w
isi: 1
keyword:
- condensed matter - mesoscale and nanoscale physics
- condensed matter - strongly correlated electrons
- multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2104.00653
month: '09'
oa: 1
oa_version: Preprint
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1038/s41586-021-04181-z
scopus_import: '1'
status: public
title: Half and quarter metals in rhombohedral trilayer graphene
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
year: '2021'
...
---
_id: '10029'
abstract:
- lang: eng
  text: Superconductor-semiconductor hybrids are platforms for realizing effective
    p-wave superconductivity. Spin-orbit coupling, combined with the proximity effect,
    causes the two-dimensional semiconductor to inherit p±ip intraband pairing, and
    application of magnetic field can then result in transitions to the normal state,
    partial Bogoliubov Fermi surfaces, or topological phases with Majorana modes.
    Experimentally probing the hybrid superconductor-semiconductor interface is challenging
    due to the shunting effect of the conventional superconductor. Consequently, the
    nature of induced pairing remains an open question. Here, we use the circuit quantum
    electrodynamics architecture to probe induced superconductivity in a two dimensional
    Al-InAs hybrid system. We observe a strong suppression of superfluid density and
    enhanced dissipation driven by magnetic field, which cannot be accounted for by
    the depairing theory of an s-wave superconductor. These observations are explained
    by a picture of independent intraband p±ip superconductors giving way to partial
    Bogoliubov Fermi surfaces, and allow for the first characterization of key properties
    of the hybrid superconducting system.
acknowledged_ssus:
- _id: M-Shop
- _id: NanoFab
acknowledgement: This research was supported by the Scientific Service Units of IST
  Austria through resources provided by the MIBA Machine Shop and the nanofabrication
  facility. JS and AG were supported by funding from the European Union’s Horizon
  2020 research and innovation program under the Marie Sklodowska-Curie Grant Agreement
  No.754411.
article_number: '2107.03695'
article_processing_charge: No
arxiv: 1
author:
- first_name: Duc T
  full_name: Phan, Duc T
  id: 29C8C0B4-F248-11E8-B48F-1D18A9856A87
  last_name: Phan
- first_name: Jorden L
  full_name: Senior, Jorden L
  id: 5479D234-2D30-11EA-89CC-40953DDC885E
  last_name: Senior
  orcid: 0000-0002-0672-9295
- first_name: Areg
  full_name: Ghazaryan, Areg
  id: 4AF46FD6-F248-11E8-B48F-1D18A9856A87
  last_name: Ghazaryan
  orcid: 0000-0001-9666-3543
- first_name: M.
  full_name: Hatefipour, M.
  last_name: Hatefipour
- first_name: W. M.
  full_name: Strickland, W. M.
  last_name: Strickland
- first_name: J.
  full_name: Shabani, J.
  last_name: Shabani
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
- first_name: Andrew P
  full_name: Higginbotham, Andrew P
  id: 4AD6785A-F248-11E8-B48F-1D18A9856A87
  last_name: Higginbotham
  orcid: 0000-0003-2607-2363
citation:
  ama: Phan DT, Senior JL, Ghazaryan A, et al. Breakdown of induced p±ip pairing in
    a superconductor-semiconductor hybrid. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.2107.03695">10.48550/arXiv.2107.03695</a>
  apa: Phan, D. T., Senior, J. L., Ghazaryan, A., Hatefipour, M., Strickland, W. M.,
    Shabani, J., … Higginbotham, A. P. (n.d.). Breakdown of induced p±ip pairing in
    a superconductor-semiconductor hybrid. <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2107.03695">https://doi.org/10.48550/arXiv.2107.03695</a>
  chicago: Phan, Duc T, Jorden L Senior, Areg Ghazaryan, M. Hatefipour, W. M. Strickland,
    J. Shabani, Maksym Serbyn, and Andrew P Higginbotham. “Breakdown of Induced P±ip
    Pairing in a Superconductor-Semiconductor Hybrid.” <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/arXiv.2107.03695">https://doi.org/10.48550/arXiv.2107.03695</a>.
  ieee: D. T. Phan <i>et al.</i>, “Breakdown of induced p±ip pairing in a superconductor-semiconductor
    hybrid,” <i>arXiv</i>. .
  ista: Phan DT, Senior JL, Ghazaryan A, Hatefipour M, Strickland WM, Shabani J, Serbyn
    M, Higginbotham AP. Breakdown of induced p±ip pairing in a superconductor-semiconductor
    hybrid. arXiv, 2107.03695.
  mla: Phan, Duc T., et al. “Breakdown of Induced P±ip Pairing in a Superconductor-Semiconductor
    Hybrid.” <i>ArXiv</i>, 2107.03695, doi:<a href="https://doi.org/10.48550/arXiv.2107.03695">10.48550/arXiv.2107.03695</a>.
  short: D.T. Phan, J.L. Senior, A. Ghazaryan, M. Hatefipour, W.M. Strickland, J.
    Shabani, M. Serbyn, A.P. Higginbotham, ArXiv (n.d.).
date_created: 2021-09-21T08:41:02Z
date_published: 2021-07-08T00:00:00Z
date_updated: 2025-04-15T06:54:43Z
day: '08'
department:
- _id: MaSe
- _id: AnHi
- _id: MiLe
doi: 10.48550/arXiv.2107.03695
ec_funded: 1
external_id:
  arxiv:
  - '2107.03695'
fulldoi: https://doi.org/10.48550/arXiv.2107.03695
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2107.03695
month: '07'
oa: 1
oa_version: Preprint
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: arXiv
publication_status: draft
related_material:
  record:
  - id: '9636'
    relation: research_data
    status: public
  - id: '10851'
    relation: later_version
    status: public
status: public
title: Breakdown of induced p±ip pairing in a superconductor-semiconductor hybrid
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
OA_place: publisher
_id: '10030'
abstract:
- lang: eng
  text: "This PhD thesis is primarily focused on the study of discrete transport problems,
    introduced for the first time in the seminal works of Maas [Maa11] and Mielke
    [Mie11] on finite state Markov chains and reaction-diffusion equations, respectively.
    More in detail, my research focuses on the study of transport costs on graphs,
    in particular the convergence and the stability of such problems in the discrete-to-continuum
    limit. This thesis also includes some results concerning\r\nnon-commutative optimal
    transport. The first chapter of this thesis consists of a general introduction
    to the optimal transport problems, both in the discrete, the continuous, and the
    non-commutative setting. Chapters 2 and 3 present the content of two works, obtained
    in collaboration with Peter Gladbach, Eva Kopfer, and Jan Maas, where we have
    been able to show the convergence of discrete transport costs on periodic graphs
    to suitable continuous ones, which can be described by means of a homogenisation
    result. We first focus on the particular case of quadratic costs on the real line
    and then extending the result to more general costs in arbitrary dimension. Our
    results are the first complete characterisation of limits of transport costs on
    periodic graphs in arbitrary dimension which do not rely on any additional symmetry.
    In Chapter 4 we turn our attention to one of the intriguing connection between
    evolution equations and optimal transport, represented by the theory of gradient
    flows. We show that discrete gradient flow structures associated to a finite volume
    approximation of a certain class of diffusive equations (Fokker–Planck) is stable
    in the limit of vanishing meshes, reproving the convergence of the scheme via
    the method of evolutionary Γ-convergence and exploiting a more variational point
    of view on the problem. This is based on a collaboration with Dominik Forkert
    and Jan Maas. Chapter 5 represents a change of perspective, moving away from the
    discrete world and reaching the non-commutative one. As in the discrete case,
    we discuss how classical tools coming from the commutative optimal transport can
    be translated into the setting of density matrices. In particular, in this final
    chapter we present a non-commutative version of the Schrödinger problem (or entropic
    regularised optimal transport problem) and discuss existence and characterisation
    of minimisers, a duality result, and present a non-commutative version of the
    well-known Sinkhorn algorithm to compute the above mentioned optimisers. This
    is based on a joint work with Dario Feliciangeli and Augusto Gerolin. Finally,
    Appendix A and B contain some additional material and discussions, with particular
    attention to Harnack inequalities and the regularity of flows on discrete spaces."
acknowledged_ssus:
- _id: M-Shop
- _id: NanoFab
acknowledgement: The author gratefully acknowledges support by the Austrian Science
  Fund (FWF), grants No W1245.
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Lorenzo
  full_name: Portinale, Lorenzo
  id: 30AD2CBC-F248-11E8-B48F-1D18A9856A87
  last_name: Portinale
citation:
  ama: Portinale L. Discrete-to-continuum limits of transport problems and gradient
    flows in the space of measures. 2021. doi:<a href="https://doi.org/10.15479/at:ista:10030">10.15479/at:ista:10030</a>
  apa: Portinale, L. (2021). <i>Discrete-to-continuum limits of transport problems
    and gradient flows in the space of measures</i>. Institute of Science and Technology
    Austria. <a href="https://doi.org/10.15479/at:ista:10030">https://doi.org/10.15479/at:ista:10030</a>
  chicago: Portinale, Lorenzo. “Discrete-to-Continuum Limits of Transport Problems
    and Gradient Flows in the Space of Measures.” Institute of Science and Technology
    Austria, 2021. <a href="https://doi.org/10.15479/at:ista:10030">https://doi.org/10.15479/at:ista:10030</a>.
  ieee: L. Portinale, “Discrete-to-continuum limits of transport problems and gradient
    flows in the space of measures,” Institute of Science and Technology Austria,
    2021.
  ista: Portinale L. 2021. Discrete-to-continuum limits of transport problems and
    gradient flows in the space of measures. Institute of Science and Technology Austria.
  mla: Portinale, Lorenzo. <i>Discrete-to-Continuum Limits of Transport Problems and
    Gradient Flows in the Space of Measures</i>. Institute of Science and Technology
    Austria, 2021, doi:<a href="https://doi.org/10.15479/at:ista:10030">10.15479/at:ista:10030</a>.
  short: L. Portinale, Discrete-to-Continuum Limits of Transport Problems and Gradient
    Flows in the Space of Measures, Institute of Science and Technology Austria, 2021.
corr_author: '1'
date_created: 2021-09-21T09:14:15Z
date_published: 2021-09-22T00:00:00Z
date_updated: 2026-04-08T07:00:04Z
day: '22'
ddc:
- '515'
degree_awarded: PhD
department:
- _id: GradSch
- _id: JaMa
doi: 10.15479/at:ista:10030
file:
- access_level: closed
  checksum: 8cd60dcb8762e8f21867e21e8001e183
  content_type: application/x-zip-compressed
  creator: cchlebak
  date_created: 2021-09-21T09:17:34Z
  date_updated: 2022-03-10T12:14:42Z
  file_id: '10032'
  file_name: tex_and_pictures.zip
  file_size: 3876668
  relation: source_file
- access_level: open_access
  checksum: 9789e9d967c853c1503ec7f307170279
  content_type: application/pdf
  creator: cchlebak
  date_created: 2021-09-27T11:14:31Z
  date_updated: 2021-09-27T11:14:31Z
  file_id: '10047'
  file_name: thesis_portinale_Final (1).pdf
  file_size: 2532673
  relation: main_file
file_date_updated: 2022-03-10T12:14:42Z
fulldoi: https://doi.org/10.15479/at:ista:10030
has_accepted_license: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
project:
- _id: 260788DE-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: W1245
  name: Dissipation and dispersion in nonlinear partial differential equations
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
  grant_number: F6504
  name: Taming Complexity in Partial Differential Systems
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '9792'
    relation: part_of_dissertation
    status: public
  - id: '10022'
    relation: part_of_dissertation
    status: public
  - id: '7573'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Jan
  full_name: Maas, Jan
  id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
  last_name: Maas
  orcid: 0000-0002-0845-1338
title: Discrete-to-continuum limits of transport problems and gradient flows in the
  space of measures
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2021'
...
---
_id: '10033'
abstract:
- lang: eng
  text: The ⊗*-monoidal structure on the category of sheaves on the Ran space is not
    pro-nilpotent in the sense of [3]. However, under some connectivity assumptions,
    we prove that Koszul duality induces an equivalence of categories and that this
    equivalence behaves nicely with respect to Verdier duality on the Ran space and
    integrating along the Ran space, i.e. taking factorization homology. Based on
    ideas sketched in [4], we show that these results also offer a simpler alternative
    to one of the two main steps in the proof of the Atiyah-Bott formula given in
    [7] and [5].
acknowledgement: 'The author would like to express his gratitude to D. Gaitsgory,
  without whose tireless guidance and encouragement in pursuing this problem, this
  work would not have been possible. The author is grateful to his advisor B.C. Ngô
  for many years of patient guidance and support. This paper is revised while the
  author is a postdoc in Hausel group at IST Austria. We thank him and the group for
  providing a wonderful research environment. The author also gratefully acknowledges
  the support of the Lise Meitner fellowship “Algebro-Geometric Applications of Factorization
  Homology,” Austrian Science Fund (FWF): M 2751.'
article_number: '107992'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Quoc P
  full_name: Ho, Quoc P
  id: 3DD82E3C-F248-11E8-B48F-1D18A9856A87
  last_name: Ho
  orcid: 0000-0001-6889-1418
citation:
  ama: Ho QP. The Atiyah-Bott formula and connectivity in chiral Koszul duality. <i>Advances
    in Mathematics</i>. 2021;392. doi:<a href="https://doi.org/10.1016/j.aim.2021.107992">10.1016/j.aim.2021.107992</a>
  apa: Ho, Q. P. (2021). The Atiyah-Bott formula and connectivity in chiral Koszul
    duality. <i>Advances in Mathematics</i>. Elsevier. <a href="https://doi.org/10.1016/j.aim.2021.107992">https://doi.org/10.1016/j.aim.2021.107992</a>
  chicago: Ho, Quoc P. “The Atiyah-Bott Formula and Connectivity in Chiral Koszul
    Duality.” <i>Advances in Mathematics</i>. Elsevier, 2021. <a href="https://doi.org/10.1016/j.aim.2021.107992">https://doi.org/10.1016/j.aim.2021.107992</a>.
  ieee: Q. P. Ho, “The Atiyah-Bott formula and connectivity in chiral Koszul duality,”
    <i>Advances in Mathematics</i>, vol. 392. Elsevier, 2021.
  ista: Ho QP. 2021. The Atiyah-Bott formula and connectivity in chiral Koszul duality.
    Advances in Mathematics. 392, 107992.
  mla: Ho, Quoc P. “The Atiyah-Bott Formula and Connectivity in Chiral Koszul Duality.”
    <i>Advances in Mathematics</i>, vol. 392, 107992, Elsevier, 2021, doi:<a href="https://doi.org/10.1016/j.aim.2021.107992">10.1016/j.aim.2021.107992</a>.
  short: Q.P. Ho, Advances in Mathematics 392 (2021).
corr_author: '1'
date_created: 2021-09-21T15:58:59Z
date_published: 2021-09-21T00:00:00Z
date_updated: 2025-04-14T09:09:35Z
day: '21'
ddc:
- '514'
department:
- _id: TaHa
doi: 10.1016/j.aim.2021.107992
external_id:
  arxiv:
  - '1610.00212'
  isi:
  - '000707040300031'
file:
- access_level: open_access
  checksum: f3c0086d41af11db31c00014efb38072
  content_type: application/pdf
  creator: qho
  date_created: 2021-09-21T15:58:52Z
  date_updated: 2021-09-21T15:58:52Z
  file_id: '10034'
  file_name: 1-s2.0-S000187082100431X-main.pdf
  file_size: 840635
  relation: main_file
file_date_updated: 2021-09-21T15:58:52Z
fulldoi: https://doi.org/10.1016/j.aim.2021.107992
has_accepted_license: '1'
intvolume: '       392'
isi: 1
keyword:
- Chiral algebras
- Chiral homology
- Factorization algebras
- Koszul duality
- Ran space
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
project:
- _id: 26B96266-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: M02751
  name: Algebro-Geometric Applications of Factorization Homology
publication: Advances in Mathematics
publication_identifier:
  eissn:
  - 1090-2082
  issn:
  - 0001-8708
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: The Atiyah-Bott formula and connectivity in chiral Koszul duality
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 392
year: '2021'
...
---
_id: '10051'
abstract:
- lang: eng
  text: 'Rab-interacting molecule (RIM)-binding protein 2 (BP2) is a multidomain protein
    of the presynaptic active zone (AZ). By binding to RIM, bassoon (Bsn), and voltage-gated
    Ca2+ channels (CaV), it is considered to be a central organizer of the topography
    of CaV and release sites of synaptic vesicles (SVs) at the AZ. Here, we used RIM-BP2
    knock-out (KO) mice and their wild-type (WT) littermates of either sex to investigate
    the role of RIM-BP2 at the endbulb of Held synapse of auditory nerve fibers (ANFs)
    with bushy cells (BCs) of the cochlear nucleus, a fast relay of the auditory pathway
    with high release probability. Disruption of RIM-BP2 lowered release probability
    altering short-term plasticity and reduced evoked EPSCs. Analysis of SV pool dynamics
    during high-frequency train stimulation indicated a reduction of SVs with high
    release probability but an overall normal size of the readily releasable SV pool
    (RRP). The Ca2+-dependent fast component of SV replenishment after RRP depletion
    was slowed. Ultrastructural analysis by superresolution light and electron microscopy
    revealed an impaired topography of presynaptic CaV and a reduction of docked and
    membrane-proximal SVs at the AZ. We conclude that RIM-BP2 organizes the topography
    of CaV, and promotes SV tethering and docking. This way RIM-BP2 is critical for
    establishing a high initial release probability as required to reliably signal
    sound onset information that we found to be degraded in BCs of RIM-BP2-deficient
    mice in vivo. SIGNIFICANCE STATEMENT: Rab-interacting molecule (RIM)-binding proteins
    (BPs) are key organizers of the active zone (AZ). Using a multidisciplinary approach
    to the calyceal endbulb of Held synapse that transmits auditory information at
    rates of up to hundreds of Hertz with submillisecond precision we demonstrate
    a requirement for RIM-BP2 for normal auditory signaling. Endbulb synapses lacking
    RIM-BP2 show a reduced release probability despite normal whole-terminal Ca2+
    influx and abundance of the key priming protein Munc13-1, a reduced rate of SV
    replenishment, as well as an altered topography of voltage-gated (CaV)2.1 Ca2+
    channels, and fewer docked and membrane proximal synaptic vesicles (SVs). This
    hampers transmission of sound onset information likely affecting downstream neural
    computations such as of sound localization.'
acknowledgement: This work was supported by the Deutsche Forschungsgemeinschaft (DFG,
  German Research Foundation) through the Collaborative Sensory Research Center 1286
  [to C.W. (A4) and T.M. (B5)] and under Germany’s Excellence Strategy Grant EXC 2067/1-390729940.
  We thank S. Gerke, A.J. Goldak, and C. Senger-Freitag for expert technical assistance;
  G. Hoch for developing image analysis routines; and S. Chepurwar and N. Strenzke
  for technical support and discussion regarding in vivo experiments. We also thank
  Dr. Christian Rosenmund, Dr. Katharina Grauel, and Dr. Stephan Sigrist for providing
  RIM-BP2 KO mice and Dr. Masahiko Watanabe for providing the anti-neurexin-antibody,
  and Dr. Toshihisa Ohtsuka for the anti-ELKS-antibody. J. Neef for help with the
  STED imaging and image analysis; E. Neher and S. Rizzoli for discussion and comments
  on the manuscript; K. Eguchi for help with the statistical analysis; and C. H. Huang
  and J. Neef for constant support and scientific discussion.
article_processing_charge: No
article_type: original
author:
- first_name: Tanvi
  full_name: Butola, Tanvi
  last_name: Butola
- first_name: Theocharis
  full_name: Alvanos, Theocharis
  last_name: Alvanos
- first_name: Anika
  full_name: Hintze, Anika
  last_name: Hintze
- first_name: Peter
  full_name: Koppensteiner, Peter
  id: 3B8B25A8-F248-11E8-B48F-1D18A9856A87
  last_name: Koppensteiner
  orcid: 0000-0002-3509-1948
- first_name: David
  full_name: Kleindienst, David
  id: 42E121A4-F248-11E8-B48F-1D18A9856A87
  last_name: Kleindienst
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Carolin
  full_name: Wichmann, Carolin
  last_name: Wichmann
- first_name: Tobias
  full_name: Moser, Tobias
  last_name: Moser
citation:
  ama: Butola T, Alvanos T, Hintze A, et al. RIM-binding protein 2 organizes Ca<sup>21</sup>
    channel topography and regulates release probability and vesicle replenishment
    at a fast central synapse. <i>Journal of Neuroscience</i>. 2021;41(37):7742-7767.
    doi:<a href="https://doi.org/10.1523/JNEUROSCI.0586-21.2021">10.1523/JNEUROSCI.0586-21.2021</a>
  apa: Butola, T., Alvanos, T., Hintze, A., Koppensteiner, P., Kleindienst, D., Shigemoto,
    R., … Moser, T. (2021). RIM-binding protein 2 organizes Ca<sup>21</sup> channel
    topography and regulates release probability and vesicle replenishment at a fast
    central synapse. <i>Journal of Neuroscience</i>. Society for Neuroscience. <a
    href="https://doi.org/10.1523/JNEUROSCI.0586-21.2021">https://doi.org/10.1523/JNEUROSCI.0586-21.2021</a>
  chicago: Butola, Tanvi, Theocharis Alvanos, Anika Hintze, Peter Koppensteiner, David
    Kleindienst, Ryuichi Shigemoto, Carolin Wichmann, and Tobias Moser. “RIM-Binding
    Protein 2 Organizes Ca<sup>21</sup> Channel Topography and Regulates Release Probability
    and Vesicle Replenishment at a Fast Central Synapse.” <i>Journal of Neuroscience</i>.
    Society for Neuroscience, 2021. <a href="https://doi.org/10.1523/JNEUROSCI.0586-21.2021">https://doi.org/10.1523/JNEUROSCI.0586-21.2021</a>.
  ieee: T. Butola <i>et al.</i>, “RIM-binding protein 2 organizes Ca<sup>21</sup>
    channel topography and regulates release probability and vesicle replenishment
    at a fast central synapse,” <i>Journal of Neuroscience</i>, vol. 41, no. 37. Society
    for Neuroscience, pp. 7742–7767, 2021.
  ista: Butola T, Alvanos T, Hintze A, Koppensteiner P, Kleindienst D, Shigemoto R,
    Wichmann C, Moser T. 2021. RIM-binding protein 2 organizes Ca<sup>21</sup> channel
    topography and regulates release probability and vesicle replenishment at a fast
    central synapse. Journal of Neuroscience. 41(37), 7742–7767.
  mla: Butola, Tanvi, et al. “RIM-Binding Protein 2 Organizes Ca<sup>21</sup> Channel
    Topography and Regulates Release Probability and Vesicle Replenishment at a Fast
    Central Synapse.” <i>Journal of Neuroscience</i>, vol. 41, no. 37, Society for
    Neuroscience, 2021, pp. 7742–67, doi:<a href="https://doi.org/10.1523/JNEUROSCI.0586-21.2021">10.1523/JNEUROSCI.0586-21.2021</a>.
  short: T. Butola, T. Alvanos, A. Hintze, P. Koppensteiner, D. Kleindienst, R. Shigemoto,
    C. Wichmann, T. Moser, Journal of Neuroscience 41 (2021) 7742–7767.
date_created: 2021-09-27T14:33:13Z
date_published: 2021-09-15T00:00:00Z
date_updated: 2023-08-14T06:56:30Z
day: '15'
ddc:
- '570'
department:
- _id: RySh
doi: 10.1523/JNEUROSCI.0586-21.2021
external_id:
  isi:
  - '000752287700005'
  pmid:
  - '34353898'
file:
- access_level: open_access
  checksum: 769ab627c7355a50ccfd445e43a5f351
  content_type: application/pdf
  creator: dernst
  date_created: 2022-05-31T09:10:15Z
  date_updated: 2022-05-31T09:10:15Z
  file_id: '11423'
  file_name: 2021_JourNeuroscience_Butola.pdf
  file_size: 11571961
  relation: main_file
  success: 1
file_date_updated: 2022-05-31T09:10:15Z
fulldoi: https://doi.org/10.1523/JNEUROSCI.0586-21.2021
has_accepted_license: '1'
intvolume: '        41'
isi: 1
issue: '37'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 7742-7767
pmid: 1
publication: Journal of Neuroscience
publication_identifier:
  eissn:
  - 1529-2401
  issn:
  - 0270-6474
publication_status: published
publisher: Society for Neuroscience
quality_controlled: '1'
scopus_import: '1'
status: public
title: RIM-binding protein 2 organizes Ca<sup>21</sup> channel topography and regulates
  release probability and vesicle replenishment at a fast central synapse
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 41
year: '2021'
...
---
_id: '10052'
abstract:
- lang: eng
  text: "A deterministic finite automaton (DFA) \U0001D49C is composite if its language
    L(\U0001D49C) can be decomposed into an intersection ⋂_{i = 1}^k L(\U0001D49C_i)
    of languages of smaller DFAs. Otherwise, \U0001D49C is prime. This notion of primality
    was introduced by Kupferman and Mosheiff in 2013, and while they proved that we
    can decide whether a DFA is composite, the precise complexity of this problem
    is still open, with a doubly-exponential gap between the upper and lower bounds.
    In this work, we focus on permutation DFAs, i.e., those for which the transition
    monoid is a group. We provide an NP algorithm to decide whether a permutation
    DFA is composite, and show that the difficulty of this problem comes from the
    number of non-accepting states of the instance: we give a fixed-parameter tractable
    algorithm with the number of rejecting states as the parameter. Moreover, we investigate
    the class of commutative permutation DFAs. Their structural properties allow us
    to decide compositionality in NL, and even in LOGSPACE if the alphabet size is
    fixed. Despite this low complexity, we show that complex behaviors still arise
    in this class: we provide a family of composite DFAs each requiring polynomially
    many factors with respect to its size. We also consider the variant of the problem
    that asks whether a DFA is k-factor composite, that is, decomposable into k smaller
    DFAs, for some given integer k ∈ ℕ. We show that, for commutative permutation
    DFAs, restricting the number of factors makes the decision computationally harder,
    and yields a problem with tight bounds: it is NP-complete. Finally, we show that
    in general, this problem is in PSPACE, and it is in LOGSPACE for DFAs with a singleton
    alphabet."
acknowledgement: "Ismaël Jecker: Marie Skłodowska-Curie Grant Agreement No. 754411.
  Nicolas Mazzocchi: BOSCO project PGC2018-102210-B-I00 (MCIU/AEI/FEDER, UE), BLOQUESCM
  project S2018/TCS-4339, and MINECO grant RYC-2016-20281.\r\nPetra Wolf : DFG project
  FE 560/9-1.\r\n"
alternative_title:
- LIPIcs
article_number: '18'
article_processing_charge: No
arxiv: 1
author:
- first_name: Ismael R
  full_name: Jecker, Ismael R
  id: 85D7C63E-7D5D-11E9-9C0F-98C4E5697425
  last_name: Jecker
- first_name: Nicolas
  full_name: Mazzocchi, Nicolas
  last_name: Mazzocchi
- first_name: Petra
  full_name: Wolf, Petra
  last_name: Wolf
citation:
  ama: 'Jecker IR, Mazzocchi N, Wolf P. Decomposing permutation automata. In: <i>32nd
    International Conference on Concurrency Theory</i>. Vol 203. Schloss Dagstuhl
    - Leibniz-Zentrum für Informatik; 2021. doi:<a href="https://doi.org/10.4230/LIPIcs.CONCUR.2021.18">10.4230/LIPIcs.CONCUR.2021.18</a>'
  apa: 'Jecker, I. R., Mazzocchi, N., &#38; Wolf, P. (2021). Decomposing permutation
    automata. In <i>32nd International Conference on Concurrency Theory</i> (Vol.
    203). Paris, France: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPIcs.CONCUR.2021.18">https://doi.org/10.4230/LIPIcs.CONCUR.2021.18</a>'
  chicago: Jecker, Ismael R, Nicolas Mazzocchi, and Petra Wolf. “Decomposing Permutation
    Automata.” In <i>32nd International Conference on Concurrency Theory</i>, Vol.
    203. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2021. <a href="https://doi.org/10.4230/LIPIcs.CONCUR.2021.18">https://doi.org/10.4230/LIPIcs.CONCUR.2021.18</a>.
  ieee: I. R. Jecker, N. Mazzocchi, and P. Wolf, “Decomposing permutation automata,”
    in <i>32nd International Conference on Concurrency Theory</i>, Paris, France,
    2021, vol. 203.
  ista: 'Jecker IR, Mazzocchi N, Wolf P. 2021. Decomposing permutation automata. 32nd
    International Conference on Concurrency Theory. CONCUR: Conference on Concurrency
    Theory, LIPIcs, vol. 203, 18.'
  mla: Jecker, Ismael R., et al. “Decomposing Permutation Automata.” <i>32nd International
    Conference on Concurrency Theory</i>, vol. 203, 18, Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2021, doi:<a href="https://doi.org/10.4230/LIPIcs.CONCUR.2021.18">10.4230/LIPIcs.CONCUR.2021.18</a>.
  short: I.R. Jecker, N. Mazzocchi, P. Wolf, in:, 32nd International Conference on
    Concurrency Theory, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2021.
conference:
  end_date: 2021-08-27
  location: Paris, France
  name: 'CONCUR: Conference on Concurrency Theory'
  start_date: 2021-08-23
date_created: 2021-09-27T14:33:14Z
date_published: 2021-08-13T00:00:00Z
date_updated: 2025-05-14T10:55:28Z
day: '13'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.4230/LIPIcs.CONCUR.2021.18
ec_funded: 1
external_id:
  arxiv:
  - '2107.04683'
file:
- access_level: open_access
  checksum: 4722c81be82265cf45e78adf9db91250
  content_type: application/pdf
  creator: cchlebak
  date_created: 2021-10-01T11:10:53Z
  date_updated: 2021-10-01T11:10:53Z
  file_id: '10064'
  file_name: 2021_CONCUR_Jecker.pdf
  file_size: 1003552
  relation: main_file
  success: 1
file_date_updated: 2021-10-01T11:10:53Z
fulldoi: https://doi.org/10.4230/LIPIcs.CONCUR.2021.18
has_accepted_license: '1'
intvolume: '       203'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: 32nd International Conference on Concurrency Theory
publication_identifier:
  isbn:
  - 978-3-9597-7203-7
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: Decomposing permutation automata
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 203
year: '2021'
...
---
_id: '10054'
abstract:
- lang: eng
  text: 'Graphs and games on graphs are fundamental models for the analysis of reactive
    systems, in particular, for model-checking and the synthesis of reactive systems.
    The class of ω-regular languages provides a robust specification formalism for
    the desired properties of reactive systems. In the classical infinitary formulation
    of the liveness part of an ω-regular specification, a "good" event must happen
    eventually without any bound between the good events. A stronger notion of liveness
    is bounded liveness, which requires that good events happen within d transitions.
    Given a graph or a game graph with n vertices, m edges, and a bounded liveness
    objective, the previous best-known algorithmic bounds are as follows: (i) O(dm)
    for graphs, which in the worst-case is O(n³); and (ii) O(n² d²) for games on graphs.
    Our main contributions improve these long-standing algorithmic bounds. For graphs
    we present: (i) a randomized algorithm with one-sided error with running time
    O(n^{2.5} log n) for the bounded liveness objectives; and (ii) a deterministic
    linear-time algorithm for the complement of bounded liveness objectives. For games
    on graphs, we present an O(n² d) time algorithm for the bounded liveness objectives.'
acknowledgement: 'Krishnendu Chatterjee: Supported by the ERC CoG 863818 (ForM-SMArt).
  Monika Henzinger: Supported by the Austrian Science Fund (FWF) and netIDEE SCIENCE
  project P 33775-N. Sagar Sudhir Kale: Partially supported by the Vienna Science
  and Technology Fund (WWTF) through project ICT15-003. Alexander Svozil: Fully supported
  by the Vienna Science and Technology Fund (WWTF) through project ICT15-003.'
alternative_title:
- LIPIcs
article_number: '124'
article_processing_charge: No
author:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Monika H
  full_name: Henzinger, Monika H
  id: 540c9bbd-f2de-11ec-812d-d04a5be85630
  last_name: Henzinger
  orcid: 0000-0002-5008-6530
- first_name: Sagar Sudhir
  full_name: Kale, Sagar Sudhir
  last_name: Kale
- first_name: Alexander
  full_name: Svozil, Alexander
  last_name: Svozil
citation:
  ama: 'Chatterjee K, Henzinger M, Kale SS, Svozil A. Faster algorithms for bounded
    liveness in graphs and game graphs. In: <i>48th International Colloquium on Automata,
    Languages, and Programming</i>. Vol 198. Schloss Dagstuhl - Leibniz-Zentrum für
    Informatik; 2021. doi:<a href="https://doi.org/10.4230/LIPIcs.ICALP.2021.124">10.4230/LIPIcs.ICALP.2021.124</a>'
  apa: 'Chatterjee, K., Henzinger, M., Kale, S. S., &#38; Svozil, A. (2021). Faster
    algorithms for bounded liveness in graphs and game graphs. In <i>48th International
    Colloquium on Automata, Languages, and Programming</i> (Vol. 198). Glasgow, Scotland:
    Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPIcs.ICALP.2021.124">https://doi.org/10.4230/LIPIcs.ICALP.2021.124</a>'
  chicago: Chatterjee, Krishnendu, Monika Henzinger, Sagar Sudhir Kale, and Alexander
    Svozil. “Faster Algorithms for Bounded Liveness in Graphs and Game Graphs.” In
    <i>48th International Colloquium on Automata, Languages, and Programming</i>,
    Vol. 198. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2021. <a href="https://doi.org/10.4230/LIPIcs.ICALP.2021.124">https://doi.org/10.4230/LIPIcs.ICALP.2021.124</a>.
  ieee: K. Chatterjee, M. Henzinger, S. S. Kale, and A. Svozil, “Faster algorithms
    for bounded liveness in graphs and game graphs,” in <i>48th International Colloquium
    on Automata, Languages, and Programming</i>, Glasgow, Scotland, 2021, vol. 198.
  ista: 'Chatterjee K, Henzinger M, Kale SS, Svozil A. 2021. Faster algorithms for
    bounded liveness in graphs and game graphs. 48th International Colloquium on Automata,
    Languages, and Programming. ICALP: Automata, Languages and Programming, LIPIcs,
    vol. 198, 124.'
  mla: Chatterjee, Krishnendu, et al. “Faster Algorithms for Bounded Liveness in Graphs
    and Game Graphs.” <i>48th International Colloquium on Automata, Languages, and
    Programming</i>, vol. 198, 124, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2021, doi:<a href="https://doi.org/10.4230/LIPIcs.ICALP.2021.124">10.4230/LIPIcs.ICALP.2021.124</a>.
  short: K. Chatterjee, M. Henzinger, S.S. Kale, A. Svozil, in:, 48th International
    Colloquium on Automata, Languages, and Programming, Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2021.
conference:
  end_date: 2021-07-16
  location: Glasgow, Scotland
  name: 'ICALP: Automata, Languages and Programming'
  start_date: 2021-07-12
corr_author: '1'
date_created: 2021-09-27T14:33:15Z
date_published: 2021-07-02T00:00:00Z
date_updated: 2025-05-14T10:55:19Z
day: '02'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.4230/LIPIcs.ICALP.2021.124
ec_funded: 1
file:
- access_level: open_access
  checksum: 5a3fed8dbba8c088cbeac1e24cc10bc5
  content_type: application/pdf
  creator: cchlebak
  date_created: 2021-10-01T08:49:26Z
  date_updated: 2021-10-01T08:49:26Z
  file_id: '10062'
  file_name: 2021_LIPIcs_Chatterjee.pdf
  file_size: 854576
  relation: main_file
  success: 1
file_date_updated: 2021-10-01T08:49:26Z
fulldoi: https://doi.org/10.4230/LIPIcs.ICALP.2021.124
has_accepted_license: '1'
intvolume: '       198'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
  call_identifier: H2020
  grant_number: '863818'
  name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
publication: 48th International Colloquium on Automata, Languages, and Programming
publication_identifier:
  isbn:
  - 978-3-95977-195-5
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: Faster algorithms for bounded liveness in graphs and game graphs
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 198
year: '2021'
...
---
_id: '10055'
abstract:
- lang: eng
  text: "Repeated idempotent elements are commonly used to characterise iterable behaviours
    in abstract models of computation. Therefore, given a monoid M, it is natural
    to ask how long a sequence of elements of M needs to be to ensure the presence
    of consecutive idempotent factors. This question is formalised through the notion
    of the Ramsey function R_M associated to M, obtained by mapping every k ∈ ℕ to
    the minimal integer R_M(k) such that every word u ∈ M^* of length R_M(k) contains
    k consecutive non-empty factors that correspond to the same idempotent element
    of M. In this work, we study the behaviour of the Ramsey function R_M by investigating
    the regular \U0001D49F-length of M, defined as the largest size L(M) of a submonoid
    of M isomorphic to the set of natural numbers {1,2, …, L(M)} equipped with the
    max operation. We show that the regular \U0001D49F-length of M determines the
    degree of R_M, by proving that k^L(M) ≤ R_M(k) ≤ (k|M|⁴)^L(M). To allow applications
    of this result, we provide the value of the regular \U0001D49F-length of diverse
    monoids. In particular, we prove that the full monoid of n × n Boolean matrices,
    which is used to express transition monoids of non-deterministic automata, has
    a regular \U0001D49F-length of (n²+n+2)/2."
acknowledgement: This project has received funding from the European Union’s Horizon
  2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement
  No. 754411. I wish to thank Michaël Cadilhac, Emmanuel Filiot and Charles Paperman
  for their valuable insights concerning Green’s relations.
alternative_title:
- LIPIcs
article_number: '44'
article_processing_charge: No
author:
- first_name: Ismael R
  full_name: Jecker, Ismael R
  id: 85D7C63E-7D5D-11E9-9C0F-98C4E5697425
  last_name: Jecker
citation:
  ama: 'Jecker IR. A Ramsey theorem for finite monoids. In: <i>38th International
    Symposium on Theoretical Aspects of Computer Science</i>. Vol 187. Schloss Dagstuhl
    - Leibniz-Zentrum für Informatik; 2021. doi:<a href="https://doi.org/10.4230/LIPIcs.STACS.2021.44">10.4230/LIPIcs.STACS.2021.44</a>'
  apa: 'Jecker, I. R. (2021). A Ramsey theorem for finite monoids. In <i>38th International
    Symposium on Theoretical Aspects of Computer Science</i> (Vol. 187). Saarbrücken,
    Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPIcs.STACS.2021.44">https://doi.org/10.4230/LIPIcs.STACS.2021.44</a>'
  chicago: Jecker, Ismael R. “A Ramsey Theorem for Finite Monoids.” In <i>38th International
    Symposium on Theoretical Aspects of Computer Science</i>, Vol. 187. Schloss Dagstuhl
    - Leibniz-Zentrum für Informatik, 2021. <a href="https://doi.org/10.4230/LIPIcs.STACS.2021.44">https://doi.org/10.4230/LIPIcs.STACS.2021.44</a>.
  ieee: I. R. Jecker, “A Ramsey theorem for finite monoids,” in <i>38th International
    Symposium on Theoretical Aspects of Computer Science</i>, Saarbrücken, Germany,
    2021, vol. 187.
  ista: 'Jecker IR. 2021. A Ramsey theorem for finite monoids. 38th International
    Symposium on Theoretical Aspects of Computer Science. STACS: Symposium on Theoretical
    Aspects of Computer Science, LIPIcs, vol. 187, 44.'
  mla: Jecker, Ismael R. “A Ramsey Theorem for Finite Monoids.” <i>38th International
    Symposium on Theoretical Aspects of Computer Science</i>, vol. 187, 44, Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2021, doi:<a href="https://doi.org/10.4230/LIPIcs.STACS.2021.44">10.4230/LIPIcs.STACS.2021.44</a>.
  short: I.R. Jecker, in:, 38th International Symposium on Theoretical Aspects of
    Computer Science, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2021.
conference:
  end_date: 2021-03-19
  location: Saarbrücken, Germany
  name: 'STACS: Symposium on Theoretical Aspects of Computer Science'
  start_date: 2021-03-16
date_created: 2021-09-27T14:33:15Z
date_published: 2021-03-10T00:00:00Z
date_updated: 2025-05-14T10:55:11Z
day: '10'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.4230/LIPIcs.STACS.2021.44
ec_funded: 1
external_id:
  isi:
  - '000635691700044'
file:
- access_level: open_access
  checksum: 17432a05733f408de300e17e390a90e4
  content_type: application/pdf
  creator: cchlebak
  date_created: 2021-10-01T09:55:00Z
  date_updated: 2021-10-01T09:55:00Z
  file_id: '10063'
  file_name: 2021_LIPIcs_Jecker.pdf
  file_size: 720250
  relation: main_file
  success: 1
file_date_updated: 2021-10-01T09:55:00Z
fulldoi: https://doi.org/10.4230/LIPIcs.STACS.2021.44
has_accepted_license: '1'
intvolume: '       187'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: 38th International Symposium on Theoretical Aspects of Computer Science
publication_identifier:
  isbn:
  - 978-3-9597-7180-1
  issn:
  - 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: A Ramsey theorem for finite monoids
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 187
year: '2021'
...
---
_id: '10067'
abstract:
- lang: eng
  text: The search for novel entangled phases of matter has lead to the recent discovery
    of a new class of “entanglement transitions,” exemplified by random tensor networks
    and monitored quantum circuits. Most known examples can be understood as some
    classical ordering transitions in an underlying statistical mechanics model, where
    entanglement maps onto the free-energy cost of inserting a domain wall. In this
    paper we study the possibility of entanglement transitions driven by physics beyond
    such statistical mechanics mappings. Motivated by recent applications of neural-network-inspired
    variational Ansätze, we investigate under what conditions on the variational parameters
    these Ansätze can capture an entanglement transition. We study the entanglement
    scaling of short-range restricted Boltzmann machine (RBM) quantum states with
    random phases. For uncorrelated random phases, we analytically demonstrate the
    absence of an entanglement transition and reveal subtle finite-size effects in
    finite-size numerical simulations. Introducing phases with correlations decaying
    as 1/r^α in real space, we observe three regions with a different scaling of entanglement
    entropy depending on the exponent α. We study the nature of the transition between
    these regions, finding numerical evidence for critical behavior. Our work establishes
    the presence of long-range correlated phases in RBM-based wave functions as a
    required ingredient for entanglement transitions.
acknowledgement: We would like to thank S. De Nicola, P. Brighi, and V. Karle for
  fruitful discussions and valuable feedback on the manuscript. R.M. and M.S. acknowledge
  support by the European Research Council (ERC) under the European Union's Horizon
  2020 research and innovation program (Grant Agreement No. 850899). R.V. acknowledges
  support from the US Department of Energy, Office of Science, Basic Energy Sciences,
  under Early Career Award No. DE-SC0019168, and the Alfred P. Sloan Foundation through
  a Sloan Research Fellowship.
article_number: '104205'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Raimel A
  full_name: Medina Ramos, Raimel A
  id: CE680B90-D85A-11E9-B684-C920E6697425
  last_name: Medina Ramos
  orcid: 0000-0002-5383-2869
- first_name: Romain
  full_name: Vasseur, Romain
  last_name: Vasseur
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
citation:
  ama: Medina Ramos RA, Vasseur R, Serbyn M. Entanglement transitions from restricted
    Boltzmann machines. <i>Physical Review B</i>. 2021;104(10). doi:<a href="https://doi.org/10.1103/physrevb.104.104205">10.1103/physrevb.104.104205</a>
  apa: Medina Ramos, R. A., Vasseur, R., &#38; Serbyn, M. (2021). Entanglement transitions
    from restricted Boltzmann machines. <i>Physical Review B</i>. American Physical
    Society. <a href="https://doi.org/10.1103/physrevb.104.104205">https://doi.org/10.1103/physrevb.104.104205</a>
  chicago: Medina Ramos, Raimel A, Romain Vasseur, and Maksym Serbyn. “Entanglement
    Transitions from Restricted Boltzmann Machines.” <i>Physical Review B</i>. American
    Physical Society, 2021. <a href="https://doi.org/10.1103/physrevb.104.104205">https://doi.org/10.1103/physrevb.104.104205</a>.
  ieee: R. A. Medina Ramos, R. Vasseur, and M. Serbyn, “Entanglement transitions from
    restricted Boltzmann machines,” <i>Physical Review B</i>, vol. 104, no. 10. American
    Physical Society, 2021.
  ista: Medina Ramos RA, Vasseur R, Serbyn M. 2021. Entanglement transitions from
    restricted Boltzmann machines. Physical Review B. 104(10), 104205.
  mla: Medina Ramos, Raimel A., et al. “Entanglement Transitions from Restricted Boltzmann
    Machines.” <i>Physical Review B</i>, vol. 104, no. 10, 104205, American Physical
    Society, 2021, doi:<a href="https://doi.org/10.1103/physrevb.104.104205">10.1103/physrevb.104.104205</a>.
  short: R.A. Medina Ramos, R. Vasseur, M. Serbyn, Physical Review B 104 (2021).
corr_author: '1'
date_created: 2021-10-02T09:03:42Z
date_published: 2021-09-30T00:00:00Z
date_updated: 2026-04-07T12:43:22Z
day: '30'
department:
- _id: MaSe
doi: 10.1103/physrevb.104.104205
ec_funded: 1
external_id:
  arxiv:
  - '2107.05735'
  isi:
  - '000704414400002'
fulldoi: https://doi.org/10.1103/physrevb.104.104205
intvolume: '       104'
isi: 1
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2107.05735
month: '09'
oa: 1
oa_version: Preprint
project:
- _id: 23841C26-32DE-11EA-91FC-C7463DDC885E
  call_identifier: H2020
  grant_number: '850899'
  name: 'Non-Ergodic Quantum Matter: Universality, Dynamics and Control'
publication: Physical Review B
publication_identifier:
  eissn:
  - 2469-9969
  issn:
  - 2469-9950
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
related_material:
  record:
  - id: '17208'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Entanglement transitions from restricted Boltzmann machines
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 104
year: '2021'
...
---
_id: '10069'
abstract:
- lang: eng
  text: 'The extent to which women differ in the course of blood cell counts throughout
    pregnancy, and the importance of these changes to pregnancy outcomes has not been
    well defined. Here, we develop a series of statistical analyses of repeated measures
    data to reveal the degree to which women differ in the course of pregnancy, predict
    the changes that occur, and determine the importance of these changes for post-partum
    hemorrhage (PPH) which is one of the leading causes of maternal mortality. We
    present a prospective cohort of 4082 births recorded at the University Hospital,
    Lausanne, Switzerland between 2009 and 2014 where full labour records could be
    obtained, along with complete blood count data taken at hospital admission. We
    find significant differences, at a [Formula: see text] level, among women in how
    blood count values change through pregnancy for mean corpuscular hemoglobin, mean
    corpuscular volume, mean platelet volume, platelet count and red cell distribution
    width. We find evidence that almost all complete blood count values show trimester-specific
    associations with PPH. For example, high platelet count (OR 1.20, 95% CI 1.01-1.53),
    high mean platelet volume (OR 1.58, 95% CI 1.04-2.08), and high erythrocyte levels
    (OR 1.36, 95% CI 1.01-1.57) in trimester 1 increased PPH, but high values in trimester
    3 decreased PPH risk (OR 0.85, 0.79, 0.67 respectively). We show that differences
    among women in the course of blood cell counts throughout pregnancy have an important
    role in shaping pregnancy outcome and tracking blood count value changes through
    pregnancy improves identification of women at increased risk of postpartum hemorrhage.
    This study provides greater understanding of the complex changes in blood count
    values that occur through pregnancy and provides indicators to guide the stratification
    of patients into risk groups.'
acknowledgement: This project was funded by an SNSF Eccellenza Grant to MRR (PCEGP3-181181),
  and by core funding from the Institute of Science and Technology Austria. We would
  like to thank the participants of the study and all the midwives and doctors for
  the computerized obstetrical data.
article_number: '19238'
article_processing_charge: Yes
article_type: original
author:
- first_name: Matthew Richard
  full_name: Robinson, Matthew Richard
  id: E5D42276-F5DA-11E9-8E24-6303E6697425
  last_name: Robinson
  orcid: 0000-0001-8982-8813
- first_name: Marion
  full_name: Patxot, Marion
  last_name: Patxot
- first_name: Miloš
  full_name: Stojanov, Miloš
  last_name: Stojanov
- first_name: Sabine
  full_name: Blum, Sabine
  last_name: Blum
- first_name: David
  full_name: Baud, David
  last_name: Baud
citation:
  ama: Robinson MR, Patxot M, Stojanov M, Blum S, Baud D. Postpartum hemorrhage risk
    is driven by changes in blood composition through pregnancy. <i>Scientific Reports</i>.
    2021;11. doi:<a href="https://doi.org/10.1038/s41598-021-98411-z">10.1038/s41598-021-98411-z</a>
  apa: Robinson, M. R., Patxot, M., Stojanov, M., Blum, S., &#38; Baud, D. (2021).
    Postpartum hemorrhage risk is driven by changes in blood composition through pregnancy.
    <i>Scientific Reports</i>. Springer Nature. <a href="https://doi.org/10.1038/s41598-021-98411-z">https://doi.org/10.1038/s41598-021-98411-z</a>
  chicago: Robinson, Matthew Richard, Marion Patxot, Miloš Stojanov, Sabine Blum,
    and David Baud. “Postpartum Hemorrhage Risk Is Driven by Changes in Blood Composition
    through Pregnancy.” <i>Scientific Reports</i>. Springer Nature, 2021. <a href="https://doi.org/10.1038/s41598-021-98411-z">https://doi.org/10.1038/s41598-021-98411-z</a>.
  ieee: M. R. Robinson, M. Patxot, M. Stojanov, S. Blum, and D. Baud, “Postpartum
    hemorrhage risk is driven by changes in blood composition through pregnancy,”
    <i>Scientific Reports</i>, vol. 11. Springer Nature, 2021.
  ista: Robinson MR, Patxot M, Stojanov M, Blum S, Baud D. 2021. Postpartum hemorrhage
    risk is driven by changes in blood composition through pregnancy. Scientific Reports.
    11, 19238.
  mla: Robinson, Matthew Richard, et al. “Postpartum Hemorrhage Risk Is Driven by
    Changes in Blood Composition through Pregnancy.” <i>Scientific Reports</i>, vol.
    11, 19238, Springer Nature, 2021, doi:<a href="https://doi.org/10.1038/s41598-021-98411-z">10.1038/s41598-021-98411-z</a>.
  short: M.R. Robinson, M. Patxot, M. Stojanov, S. Blum, D. Baud, Scientific Reports
    11 (2021).
corr_author: '1'
date_created: 2021-10-03T22:01:21Z
date_published: 2021-09-28T00:00:00Z
date_updated: 2024-10-09T21:00:57Z
day: '28'
ddc:
- '618'
department:
- _id: MaRo
doi: 10.1038/s41598-021-98411-z
external_id:
  isi:
  - '000701575500083'
  pmid:
  - '34584125'
file:
- access_level: open_access
  checksum: f002ec22f609f58e1263b79e7f79601e
  content_type: application/pdf
  creator: cchlebak
  date_created: 2021-10-05T14:56:48Z
  date_updated: 2021-10-05T14:56:48Z
  file_id: '10091'
  file_name: 2021_ScientificReports_Robinson.pdf
  file_size: 6970368
  relation: main_file
  success: 1
file_date_updated: 2021-10-05T14:56:48Z
fulldoi: https://doi.org/10.1038/s41598-021-98411-z
has_accepted_license: '1'
intvolume: '        11'
isi: 1
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
pmid: 1
publication: Scientific Reports
publication_identifier:
  eissn:
  - 2045-2322
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Postpartum hemorrhage risk is driven by changes in blood composition through
  pregnancy
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 11
year: '2021'
...
---
_id: '10070'
abstract:
- lang: eng
  text: We extensively discuss the Rademacher and Sobolev-to-Lipschitz properties
    for generalized intrinsic distances on strongly local Dirichlet spaces possibly
    without square field operator. We present many non-smooth and infinite-dimensional
    examples. As an application, we prove the integral Varadhan short-time asymptotic
    with respect to a given distance function for a large class of strongly local
    Dirichlet forms.
acknowledgement: 'The authors are grateful to Professor Kazuhiro Kuwae for kindly
  providing a copy of [49]. They are also grateful to Dr. Bang-Xian Han for helpful
  discussions on the Sobolev-to-Lipschitz property on metric measure spaces. They
  wish to express their deepest gratitude to an anonymous Reviewer, whose punctual
  remarks and comments greatly improved the accessibility and overall quality of the
  initial submission. This work was completed while L.D.S. was a member of the Institut
  für Angewandte Mathematik of the University of Bonn. He acknowledges funding of
  his position at that time by the Deutsche Forschungsgemeinschaft (DFG, German Research
  Foundation) through the Sonderforschungsbereich (Sfb, Collaborative Research Center)
  1060 - project number 211504053. He also acknowledges funding of his current position
  by the Austrian Science Fund (FWF) grant F65, and by the European Research Council
  (ERC, grant No. 716117, awarded to Prof. Dr. Jan Maas). K.S. gratefully acknowledges
  funding by: the JSPS Overseas Research Fellowships, Grant Nr. 290142; World Premier
  International Research Center Initiative (WPI), MEXT, Japan; and JSPS Grant-in-Aid
  for Scientific Research on Innovative Areas “Discrete Geometric Analysis for Materials
  Design”, Grant Number 17H06465.'
article_number: '109234'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Lorenzo
  full_name: Dello Schiavo, Lorenzo
  id: ECEBF480-9E4F-11EA-B557-B0823DDC885E
  last_name: Dello Schiavo
  orcid: 0000-0002-9881-6870
- first_name: Kohei
  full_name: Suzuki, Kohei
  last_name: Suzuki
citation:
  ama: Dello Schiavo L, Suzuki K. Rademacher-type theorems and Sobolev-to-Lipschitz
    properties for strongly local Dirichlet spaces. <i>Journal of Functional Analysis</i>.
    2021;281(11). doi:<a href="https://doi.org/10.1016/j.jfa.2021.109234">10.1016/j.jfa.2021.109234</a>
  apa: Dello Schiavo, L., &#38; Suzuki, K. (2021). Rademacher-type theorems and Sobolev-to-Lipschitz
    properties for strongly local Dirichlet spaces. <i>Journal of Functional Analysis</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.jfa.2021.109234">https://doi.org/10.1016/j.jfa.2021.109234</a>
  chicago: Dello Schiavo, Lorenzo, and Kohei Suzuki. “Rademacher-Type Theorems and
    Sobolev-to-Lipschitz Properties for Strongly Local Dirichlet Spaces.” <i>Journal
    of Functional Analysis</i>. Elsevier, 2021. <a href="https://doi.org/10.1016/j.jfa.2021.109234">https://doi.org/10.1016/j.jfa.2021.109234</a>.
  ieee: L. Dello Schiavo and K. Suzuki, “Rademacher-type theorems and Sobolev-to-Lipschitz
    properties for strongly local Dirichlet spaces,” <i>Journal of Functional Analysis</i>,
    vol. 281, no. 11. Elsevier, 2021.
  ista: Dello Schiavo L, Suzuki K. 2021. Rademacher-type theorems and Sobolev-to-Lipschitz
    properties for strongly local Dirichlet spaces. Journal of Functional Analysis.
    281(11), 109234.
  mla: Dello Schiavo, Lorenzo, and Kohei Suzuki. “Rademacher-Type Theorems and Sobolev-to-Lipschitz
    Properties for Strongly Local Dirichlet Spaces.” <i>Journal of Functional Analysis</i>,
    vol. 281, no. 11, 109234, Elsevier, 2021, doi:<a href="https://doi.org/10.1016/j.jfa.2021.109234">10.1016/j.jfa.2021.109234</a>.
  short: L. Dello Schiavo, K. Suzuki, Journal of Functional Analysis 281 (2021).
corr_author: '1'
date_created: 2021-10-03T22:01:21Z
date_published: 2021-09-15T00:00:00Z
date_updated: 2025-04-14T07:27:45Z
day: '15'
department:
- _id: JaMa
doi: 10.1016/j.jfa.2021.109234
ec_funded: 1
external_id:
  arxiv:
  - '2008.01492'
  isi:
  - '000703896600005'
fulldoi: https://doi.org/10.1016/j.jfa.2021.109234
intvolume: '       281'
isi: 1
issue: '11'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2008.01492
month: '09'
oa: 1
oa_version: Preprint
project:
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
  grant_number: F6504
  name: Taming Complexity in Partial Differential Systems
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '716117'
  name: Optimal Transport and Stochastic Dynamics
publication: Journal of Functional Analysis
publication_identifier:
  eissn:
  - 1096-0783
  issn:
  - 0022-1236
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Rademacher-type theorems and Sobolev-to-Lipschitz properties for strongly local
  Dirichlet spaces
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 281
year: '2021'
...
