---
OA_type: closed access
_id: '18960'
abstract:
- lang: eng
text: The importance of physical forces in the morphogenesis, homeostatic function,
and pathological dysfunction of multicellular tissues is being increasingly characterized,
both theoretically and experimentally. Analogies between biological systems and
inert materials such as foams, gels, and liquid crystals have provided striking
insights into the core design principles underlying multicellular organization.
However, these connections can seem surprising given that a key feature of multicellular
systems is their ability to constantly consume energy, providing an active origin
for the forces that they produce. Key emerging questions are, therefore, to understand
whether and how this activity grants tissues novel properties that do not have
counterparts in classical materials, as well as their consequences for biological
function. Here, we review recent discoveries at the intersection of active matter
and tissue biology, with an emphasis on how modeling and experiments can be combined
to understand the dynamics of multicellular systems. These approaches suggest
that a number of key biological tissue-scale phenomena, such as morphogenetic
shape changes, collective migration, or fate decisions, share unifying design
principles that can be described by physical models of tissue active matter.
acknowledgement: We thank Fridtjof Brauns, Anna Kicheva, and Carl-Philipp Heisenberg
for a critical reading of the manuscript and Claudia Flandoli for the artwork in
the figures. D.B.B. was supported by the NOMIS foundation as a NOMIS Fellow and
by an EMBO Postdoctoral Fellowship (ALTF 343-2022). This work received funding from
the European Research Council (ERC) under the European Union\u2019s Horizon 2020
Research and Innovation Programme Grant Agreement no. 851288.
article_number: a041653
article_processing_charge: No
article_type: original
author:
- first_name: David
full_name: Brückner, David
id: e1e86031-6537-11eb-953a-f7ab92be508d
last_name: Brückner
orcid: 0000-0001-7205-2975
- first_name: Edouard B
full_name: Hannezo, Edouard B
id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
last_name: Hannezo
orcid: 0000-0001-6005-1561
citation:
ama: 'Brückner D, Hannezo EB. Tissue active matter: Integrating mechanics and signaling
into dynamical models. Cold Spring Harbor Perspectives in Biology. 2025;17(4).
doi:10.1101/cshperspect.a041653'
apa: 'Brückner, D., & Hannezo, E. B. (2025). Tissue active matter: Integrating
mechanics and signaling into dynamical models. Cold Spring Harbor Perspectives
in Biology. Cold Spring Harbor Laboratory Press. https://doi.org/10.1101/cshperspect.a041653'
chicago: 'Brückner, David, and Edouard B Hannezo. “Tissue Active Matter: Integrating
Mechanics and Signaling into Dynamical Models.” Cold Spring Harbor Perspectives
in Biology. Cold Spring Harbor Laboratory Press, 2025. https://doi.org/10.1101/cshperspect.a041653.'
ieee: 'D. Brückner and E. B. Hannezo, “Tissue active matter: Integrating mechanics
and signaling into dynamical models,” Cold Spring Harbor Perspectives in Biology,
vol. 17, no. 4. Cold Spring Harbor Laboratory Press, 2025.'
ista: 'Brückner D, Hannezo EB. 2025. Tissue active matter: Integrating mechanics
and signaling into dynamical models. Cold Spring Harbor Perspectives in Biology.
17(4), a041653.'
mla: 'Brückner, David, and Edouard B. Hannezo. “Tissue Active Matter: Integrating
Mechanics and Signaling into Dynamical Models.” Cold Spring Harbor Perspectives
in Biology, vol. 17, no. 4, a041653, Cold Spring Harbor Laboratory Press,
2025, doi:10.1101/cshperspect.a041653.'
short: D. Brückner, E.B. Hannezo, Cold Spring Harbor Perspectives in Biology 17
(2025).
corr_author: '1'
date_created: 2025-01-29T13:33:47Z
date_published: 2025-04-01T00:00:00Z
date_updated: 2025-12-30T07:08:34Z
day: '01'
department:
- _id: EdHa
doi: 10.1101/cshperspect.a041653
ec_funded: 1
external_id:
isi:
- '001456660400001'
pmid:
- '38951023'
intvolume: ' 17'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa_version: None
pmid: 1
project:
- _id: 34e2a5b5-11ca-11ed-8bc3-b2265616ef0b
grant_number: ALTF 343-2022
name: A mechano-chemical theory for stem cell fate decisions in organoid development
- _id: 05943252-7A3F-11EA-A408-12923DDC885E
call_identifier: H2020
grant_number: '851288'
name: Design Principles of Branching Morphogenesis
publication: Cold Spring Harbor Perspectives in Biology
publication_identifier:
issn:
- 1943-0264
publication_status: published
publisher: Cold Spring Harbor Laboratory Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Tissue active matter: Integrating mechanics and signaling into dynamical models'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 17
year: '2025'
...
---
OA_place: publisher
_id: '18979'
abstract:
- lang: eng
text: "Topological Data Analysis (TDA) is a discipline utilizing the mathematical
field of topology to study data, most prominently collections of point sets. This
thesis summarizes three projects related to computations in TDA.\r\n\r\nThe first
one establishes a variant of TDA for chromatic point sets, where each point is
given a color. For example, we are given positions of cells within a tumor microenvironment,
and color the cancerous cells red, and the immune cells blue.\r\n\r\nThe aim is
then to give a quantitative description of how the two or more sets of points
spatially interact. Building on image, kernel and cokernel variants of persistent
homology, we suggest six-packs of persistent diagrams as such a descriptor.\r\n\r\nWe
describe a construction of a chromatic alpha complex, which enables efficient
computation of several variants of the six-packs. We give topological descriptions
of natural subcomplexes of the chromatic alpha complex, and show that the radii
of the simplices form a discrete Morse function. Finally, we provide an implementation
of the presented chromatic TDA pipeline.\r\n\r\nThe second part aims to translate
a powerful tool of sheaf theory to elementary terms using labeled matrices. The
goal is to enable their use in computational settings. We show that derived categories
of sheaves over finite posets have, up to isomorphism, unique objects---minimal
injective resolutions---and give a concrete algorithm to compute them. We further
describe simple algorithms to compute derived pushforwards and pullbacks for monotonic
maps, and their proper variants for inclusions, and demonstrate their tractability
by providing an implementation. Finally, we suggest a discrete definition of microsupport
and show desirable properties inspired by discrete Morse theory.\r\n\r\nIn the
last part, we present a collection of observations about collapses. We give a
characterization of collapsibility in terms of unitriangular submatrices of the
boundary matrix, a cotree-tree decomposition, and the optimal solution to a variant
of the Procrustes problem. We establish relation between dual collapses and relative
Morse theory and pose several open questions. Finally, focusing on complexes embedded
in the three-dimensional Euclidean space, we describe a relation between the collapsibility
and the triviality of a polygonal knot."
acknowledgement: "The research presented in this thesis was funded with the Wittgenstein
Prize,\r\nAustrian Science Fund (FWF), grant no. Z 342-N31, and from the DFG Collaborative
Research\r\nCenter TRR 109, ‘Discretization in Geometry and Dynamics’, Austrian
Science Fund (FWF),\r\ngrant no. I 02979-N35.\r\n"
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Ondrej
full_name: Draganov, Ondrej
id: 2B23F01E-F248-11E8-B48F-1D18A9856A87
last_name: Draganov
orcid: 0000-0003-0464-3823
citation:
ama: Draganov O. Structures and computations in topological data analysis. 2025.
doi:10.15479/at:ista:18979
apa: Draganov, O. (2025). Structures and computations in topological data analysis.
Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:18979
chicago: Draganov, Ondrej. “Structures and Computations in Topological Data Analysis.”
Institute of Science and Technology Austria, 2025. https://doi.org/10.15479/at:ista:18979.
ieee: O. Draganov, “Structures and computations in topological data analysis,” Institute
of Science and Technology Austria, 2025.
ista: Draganov O. 2025. Structures and computations in topological data analysis.
Institute of Science and Technology Austria.
mla: Draganov, Ondrej. Structures and Computations in Topological Data Analysis.
Institute of Science and Technology Austria, 2025, doi:10.15479/at:ista:18979.
short: O. Draganov, Structures and Computations in Topological Data Analysis, Institute
of Science and Technology Austria, 2025.
corr_author: '1'
date_created: 2025-01-31T17:04:40Z
date_published: 2025-02-03T00:00:00Z
date_updated: 2026-04-07T11:47:30Z
day: '03'
ddc:
- '514'
- '004'
degree_awarded: PhD
department:
- _id: GradSch
- _id: HeEd
doi: 10.15479/at:ista:18979
file:
- access_level: closed
checksum: af6567e5d35e5eb330b8925ae37f1998
content_type: application/zip
creator: odragano
date_created: 2025-01-31T16:58:30Z
date_updated: 2025-01-31T16:58:30Z
file_id: '18983'
file_name: Thesis.zip
file_size: 11899491
relation: source_file
- access_level: open_access
checksum: c3fef68e35b9dc2020b2ca6006da6343
content_type: application/pdf
creator: odragano
date_created: 2025-02-04T16:22:07Z
date_updated: 2025-02-04T16:22:07Z
file_id: '19000'
file_name: Thesis.pdf
file_size: 8857514
relation: main_file
file_date_updated: 2025-02-04T16:22:07Z
has_accepted_license: '1'
keyword:
- topological data analysis
- chromatic point set
- alpha complex
- persistent homology
- six pack
- sheaf
- microlocal discrete Morse
- injective resolution
- collapse
- knot
- discrete Morse theory
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: '140'
project:
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I02979-N35
name: Persistence and stability of geometric complexes
- _id: 268116B8-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z00342
name: Mathematics, Computer Science
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '15091'
relation: part_of_dissertation
status: public
- id: '18981'
relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
title: Structures and computations in topological data analysis
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '18984'
abstract:
- lang: eng
text: Although planets have been found orbiting binary systems, whether they can
survive binary interactions is debated. While the tightest-orbit binaries should
host the most dynamically stable and long-lived circumbinary planetary systems,
they are also the systems that are expected to experience mass transfer, common
envelope evolution, or stellar mergers. In this study, we explore the effect of
stable non-conservative mass transfer on the dynamical evolution of circumbinary
planets. We present a new script that seamlessly integrates binary evolution data
from the 1D binary stellar evolution code MESA into the N-body simulation code
REBOUND. This integration framework enables a comprehensive examination of the
dynamical evolution of circumbinary planets orbiting mass-transferring binaries,
while simultaneously accounting for the detailed stellar structure evolution.
In addition, we introduce a recalibration method to mitigate numerical errors
from updates of binary properties during the system's dynamical evolution. We
construct a reference binary model in which a 2.21M⊙ star loses its hydrogen-rich
envelope through non-conservative mass transfer to the 1.76M⊙ companion star,
creating a 0.38M⊙ subdwarf. We find the tightest stable orbital separation for
circumbinary planets to be ≃2.5 times the binary separation after mass transfer.
Accounting for tides by using the interior stellar structure, we find that tidal
effects become apparent after the rapid mass transfer phase and start to fade
away during the latter stage of the slow mass transfer phase. Our research provides
a new framework for exploring circumbinary planet dynamics in interacting binary
systems.
acknowledgement: We thank the participants of the 2023 Kavli Summer Program in Astrophysics,
hosted by the Max Planck Institute for Astrophysics and funded by the Kavli Foundation.
In particular, Holly Preece, Selma de Mink, and Stephen Justham for their feedback
and comments on our work. ZX acknowledges support from the China Scholarship Council
(CSC). ST acknowledges the funding from the European Union’s Horizon 2020 research
and innovation programme under the Marie Skłodowska-Curie grant agreement No. 101034413.
AAT acknowledges support from the Horizon Europe research and innovation programmes
under the Marie Skłodowska-Curie grant agreement no. 101103134.
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Zepei
full_name: Xing, Zepei
last_name: Xing
- first_name: Santiago
full_name: Torres Rodriguez, Santiago
id: a8df4360-4328-11ee-8f1a-e502d0c83fc2
last_name: Torres Rodriguez
orcid: 0000-0002-3150-8988
- first_name: Ylva Louise Linsdotter
full_name: Götberg, Ylva Louise Linsdotter
id: d0648d0c-0f64-11ee-a2e0-dd0faa2e4f7d
last_name: Götberg
orcid: 0000-0002-6960-6911
- first_name: Alessandro A.
full_name: Trani, Alessandro A.
last_name: Trani
- first_name: Valeriya
full_name: Korol, Valeriya
last_name: Korol
- first_name: Jorge
full_name: Cuadra, Jorge
last_name: Cuadra
citation:
ama: 'Xing Z, Torres Rodriguez S, Götberg YLL, Trani AA, Korol V, Cuadra J. Combining
REBOUND and MESA: Dynamical evolution of planets orbiting interacting binaries.
Monthly Notices of the Royal Astronomical Society. 2025;537(1):285-292.
doi:10.1093/mnras/stae2820'
apa: 'Xing, Z., Torres Rodriguez, S., Götberg, Y. L. L., Trani, A. A., Korol, V.,
& Cuadra, J. (2025). Combining REBOUND and MESA: Dynamical evolution of planets
orbiting interacting binaries. Monthly Notices of the Royal Astronomical Society.
Oxford University Press. https://doi.org/10.1093/mnras/stae2820'
chicago: 'Xing, Zepei, Santiago Torres Rodriguez, Ylva Louise Linsdotter Götberg,
Alessandro A. Trani, Valeriya Korol, and Jorge Cuadra. “Combining REBOUND and
MESA: Dynamical Evolution of Planets Orbiting Interacting Binaries.” Monthly
Notices of the Royal Astronomical Society. Oxford University Press, 2025.
https://doi.org/10.1093/mnras/stae2820.'
ieee: 'Z. Xing, S. Torres Rodriguez, Y. L. L. Götberg, A. A. Trani, V. Korol, and
J. Cuadra, “Combining REBOUND and MESA: Dynamical evolution of planets orbiting
interacting binaries,” Monthly Notices of the Royal Astronomical Society,
vol. 537, no. 1. Oxford University Press, pp. 285–292, 2025.'
ista: 'Xing Z, Torres Rodriguez S, Götberg YLL, Trani AA, Korol V, Cuadra J. 2025.
Combining REBOUND and MESA: Dynamical evolution of planets orbiting interacting
binaries. Monthly Notices of the Royal Astronomical Society. 537(1), 285–292.'
mla: 'Xing, Zepei, et al. “Combining REBOUND and MESA: Dynamical Evolution of Planets
Orbiting Interacting Binaries.” Monthly Notices of the Royal Astronomical Society,
vol. 537, no. 1, Oxford University Press, 2025, pp. 285–92, doi:10.1093/mnras/stae2820.'
short: Z. Xing, S. Torres Rodriguez, Y.L.L. Götberg, A.A. Trani, V. Korol, J. Cuadra,
Monthly Notices of the Royal Astronomical Society 537 (2025) 285–292.
date_created: 2025-02-02T23:01:53Z
date_published: 2025-02-01T00:00:00Z
date_updated: 2025-12-30T07:25:37Z
day: '01'
ddc:
- '520'
department:
- _id: YlGo
- _id: LiBu
doi: 10.1093/mnras/stae2820
ec_funded: 1
external_id:
arxiv:
- '2410.19695'
isi:
- '001400731500001'
file:
- access_level: open_access
checksum: 49fb4fe69f487d36169ccea60acbeccc
content_type: application/pdf
creator: dernst
date_created: 2025-12-30T07:24:34Z
date_updated: 2025-12-30T07:24:34Z
file_id: '20881'
file_name: 2025_MonthlyNoticesRAS_Xing.pdf
file_size: 2974244
relation: main_file
success: 1
file_date_updated: 2025-12-30T07:24:34Z
has_accepted_license: '1'
intvolume: ' 537'
isi: 1
issue: '1'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 285-292
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
eissn:
- 1365-2966
issn:
- 0035-8711
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Combining REBOUND and MESA: Dynamical evolution of planets orbiting interacting
binaries'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 537
year: '2025'
...
---
OA_type: closed access
_id: '18985'
abstract:
- lang: eng
text: Persistent multiyear drought (MYD) events pose a growing threat to nature
and humans in a changing climate. We identified and inventoried global MYDs by
detecting spatiotemporally contiguous climatic anomalies, showing that MYDs have
become drier, hotter, and led to increasingly diminished vegetation greenness.
The global terrestrial land affected by MYDs has increased at a rate of 49,279
± 14,771 square kilometers per year from 1980 to 2018. Temperate grasslands have
exhibited the greatest declines in vegetation greenness during MYDs, whereas boreal
and tropical forests have had comparably minor responses. With MYDs becoming more
common, this global quantitative inventory of the occurrence, severity, trend,
and impact of MYDs provides an important benchmark for facilitating more effective
and collaborative preparedness toward mitigation of and adaptation to such extreme
events.
acknowledgement: This study received support from the Extremes Research Program funded
by the Swiss Federal Institute for Forest, Snow and Landscape Research (WSL) within
the EMERGE project of the Extremes program.
article_processing_charge: No
article_type: original
author:
- first_name: Liangzhi
full_name: Chen, Liangzhi
last_name: Chen
- first_name: Philipp
full_name: Brun, Philipp
last_name: Brun
- first_name: Pascal
full_name: Buri, Pascal
id: 317987aa-9421-11ee-ac5a-b941b041abba
last_name: Buri
- first_name: Simone
full_name: Fatichi, Simone
last_name: Fatichi
- first_name: Arthur
full_name: Gessler, Arthur
last_name: Gessler
- first_name: Michael
full_name: Mccarthy, Michael
id: 22a2674a-61ce-11ee-94b5-d18813baf16f
last_name: Mccarthy
- first_name: Francesca
full_name: Pellicciotti, Francesca
id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
last_name: Pellicciotti
orcid: 0000-0002-5554-8087
- first_name: Benjamin
full_name: Stocker, Benjamin
last_name: Stocker
- first_name: Dirk Nikolaus
full_name: Karger, Dirk Nikolaus
last_name: Karger
citation:
ama: Chen L, Brun P, Buri P, et al. Global increase in the occurrence and impact
of multiyear droughts. Science. 2025;387(6731):278-284. doi:10.1126/science.ado4245
apa: Chen, L., Brun, P., Buri, P., Fatichi, S., Gessler, A., McCarthy, M., … Karger,
D. N. (2025). Global increase in the occurrence and impact of multiyear droughts.
Science. AAAS. https://doi.org/10.1126/science.ado4245
chicago: Chen, Liangzhi, Philipp Brun, Pascal Buri, Simone Fatichi, Arthur Gessler,
Michael McCarthy, Francesca Pellicciotti, Benjamin Stocker, and Dirk Nikolaus
Karger. “Global Increase in the Occurrence and Impact of Multiyear Droughts.”
Science. AAAS, 2025. https://doi.org/10.1126/science.ado4245.
ieee: L. Chen et al., “Global increase in the occurrence and impact of multiyear
droughts,” Science, vol. 387, no. 6731. AAAS, pp. 278–284, 2025.
ista: Chen L, Brun P, Buri P, Fatichi S, Gessler A, McCarthy M, Pellicciotti F,
Stocker B, Karger DN. 2025. Global increase in the occurrence and impact of multiyear
droughts. Science. 387(6731), 278–284.
mla: Chen, Liangzhi, et al. “Global Increase in the Occurrence and Impact of Multiyear
Droughts.” Science, vol. 387, no. 6731, AAAS, 2025, pp. 278–84, doi:10.1126/science.ado4245.
short: L. Chen, P. Brun, P. Buri, S. Fatichi, A. Gessler, M. McCarthy, F. Pellicciotti,
B. Stocker, D.N. Karger, Science 387 (2025) 278–284.
date_created: 2025-02-02T23:01:54Z
date_published: 2025-01-17T00:00:00Z
date_updated: 2025-09-30T10:24:34Z
day: '17'
department:
- _id: FrPe
doi: 10.1126/science.ado4245
external_id:
isi:
- '001491931700027'
pmid:
- '39818908'
intvolume: ' 387'
isi: 1
issue: '6731'
language:
- iso: eng
month: '01'
oa_version: None
page: 278-284
pmid: 1
publication: Science
publication_identifier:
eissn:
- 1095-9203
publication_status: published
publisher: AAAS
quality_controlled: '1'
scopus_import: '1'
status: public
title: Global increase in the occurrence and impact of multiyear droughts
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 387
year: '2025'
...
---
APC_amount: 3272,21 EUR
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '18986'
abstract:
- lang: eng
text: 'We consider a prototypical problem of Bayesian inference for a structured
spiked model: a low-rank signal is corrupted by additive noise. While both information-theoretic
and algorithmic limits are well understood when the noise is a Gaussian Wigner
matrix, the more realistic case of structured noise still remains challenging.
To capture the structure while maintaining mathematical tractability, a line of
work has focused on rotationally invariant noise. However, existing studies either
provide suboptimal algorithms or are limited to a special class of noise ensembles.
In this paper, using tools from statistical physics (replica method) and random
matrix theory (generalized spherical integrals) we establish the characterization
of the information-theoretic limits for a noise matrix drawn from a general trace
ensemble. Remarkably, our analysis unveils the asymptotic equivalence between
the rotationally invariant model and a surrogate Gaussian one. Finally, we show
how to saturate the predicted statistical limits using an efficient algorithm
inspired by the theory of adaptive Thouless-Anderson-Palmer (TAP) equations.'
acknowledgement: J.B., F.C., and Y.X. were funded by the European Union (ERC, CHORAL,
Project No. 101039794). Views and opinions expressed are however those of the authors
only and do not necessarily reflect those of the European Union or the European
Research Council. Neither the European Union nor the granting authority can be held
responsible for them. M.M. was supported by the 2019 Lopez-Loreta Prize. J.B. acknowledges
discussions with TianQi Hou at the initial stage of the project, as well as with
Antoine Bodin.
article_number: '013081'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Jean
full_name: Barbier, Jean
last_name: Barbier
- first_name: Francesco
full_name: Camilli, Francesco
last_name: Camilli
- first_name: Yizhou
full_name: Xu, Yizhou
last_name: Xu
- first_name: Marco
full_name: Mondelli, Marco
id: 27EB676C-8706-11E9-9510-7717E6697425
last_name: Mondelli
orcid: 0000-0002-3242-7020
citation:
ama: Barbier J, Camilli F, Xu Y, Mondelli M. Information limits and Thouless-Anderson-Palmer
equations for spiked matrix models with structured noise. Physical Review Research.
2025;7. doi:10.1103/PhysRevResearch.7.013081
apa: Barbier, J., Camilli, F., Xu, Y., & Mondelli, M. (2025). Information limits
and Thouless-Anderson-Palmer equations for spiked matrix models with structured
noise. Physical Review Research. American Physical Society. https://doi.org/10.1103/PhysRevResearch.7.013081
chicago: Barbier, Jean, Francesco Camilli, Yizhou Xu, and Marco Mondelli. “Information
Limits and Thouless-Anderson-Palmer Equations for Spiked Matrix Models with Structured
Noise.” Physical Review Research. American Physical Society, 2025. https://doi.org/10.1103/PhysRevResearch.7.013081.
ieee: J. Barbier, F. Camilli, Y. Xu, and M. Mondelli, “Information limits and Thouless-Anderson-Palmer
equations for spiked matrix models with structured noise,” Physical Review
Research, vol. 7. American Physical Society, 2025.
ista: Barbier J, Camilli F, Xu Y, Mondelli M. 2025. Information limits and Thouless-Anderson-Palmer
equations for spiked matrix models with structured noise. Physical Review Research.
7, 013081.
mla: Barbier, Jean, et al. “Information Limits and Thouless-Anderson-Palmer Equations
for Spiked Matrix Models with Structured Noise.” Physical Review Research,
vol. 7, 013081, American Physical Society, 2025, doi:10.1103/PhysRevResearch.7.013081.
short: J. Barbier, F. Camilli, Y. Xu, M. Mondelli, Physical Review Research 7 (2025).
date_created: 2025-02-02T23:01:54Z
date_published: 2025-01-22T00:00:00Z
date_updated: 2026-05-06T12:57:36Z
day: '22'
ddc:
- '530'
department:
- _id: MaMo
doi: 10.1103/PhysRevResearch.7.013081
external_id:
arxiv:
- '2405.20993'
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creator: dernst
date_created: 2025-02-03T08:27:59Z
date_updated: 2025-02-03T08:27:59Z
file_id: '18988'
file_name: 2025_PhysReviewResearch_Barbier.pdf
file_size: 702543
relation: main_file
success: 1
file_date_updated: 2025-02-03T08:27:59Z
has_accepted_license: '1'
intvolume: ' 7'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 059876FA-7A3F-11EA-A408-12923DDC885E
name: Prix Lopez-Loretta 2019 - Marco Mondelli
publication: Physical Review Research
publication_identifier:
issn:
- 2643-1564
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
related_material:
link:
- relation: software
url: https://github.com/xu-yz19/spiked-matrix-models-with-structured-noise
scopus_import: '1'
status: public
title: Information limits and Thouless-Anderson-Palmer equations for spiked matrix
models with structured noise
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2025'
...
---
DOAJ_listed: '1'
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OA_type: gold
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_id: '18987'
abstract:
- lang: eng
text: Biallelic variants in NADH (nicotinamide adenine dinucleotide (NAD) + hydrogen
(H))-ubiquinone oxidoreductase 1 alpha subcomplex 13 have been linked to mitochondrial
complex I deficiency, nuclear type 28, based on three affected individuals from
two families. With only two families reported, the clinical and molecular spectrum
of NADH-ubiquinone oxidoreductase 1 alpha subcomplex 13–related diseases remains
unclear. We report 10 additional affected individuals from nine independent families,
identifying four missense variants (including recurrent c.170G > A) and three
ultra-rare or novel predicted loss-of-function biallelic variants. Updated clinical–radiological
data from previously reported families and a literature review compiling clinical
features of all reported patients with isolated complex I deficiency caused by
43 genes encoding complex I subunits and assembly factors are also provided. Our
cohort (mean age 7.8 ± 5.4 years; range 2.5–18) predominantly presented a moderate-to-severe
neurodevelopmental syndrome with oculomotor abnormalities (84%), spasticity/hypertonia
(83%), hypotonia (69%), cerebellar ataxia (66%), movement disorders (58%) and
epilepsy (46%). Neuroimaging revealed bilateral symmetric T2 hyperintense substantia
nigra lesions (91.6%) and optic nerve atrophy (66.6%). Protein modeling suggests
missense variants destabilize a critical junction between the hydrophilic and
membrane arms of complex I. Fibroblasts from two patients showed reduced complex
I activity and compensatory complex IV activity increase. This study characterizes
NADH-ubiquinone oxidoreductase 1 alpha subcomplex 13–related disease in 13 individuals,
highlighting genotype–phenotype correlations.
acknowledgement: "We thank all individuals and relatives for consent to be part of
the study. Families 1–4, 7, were collected as part of the SYNaPS Study Group collaboration
funded by The Wellcome Trust and strategic award (Synaptopathies) funding (WT093205
MA and WT104033AIA), and research was conducted as part of the Queen Square Genomics
group at the University College London, supported by the National Institute for
Health Research University College London Hospitals Biomedical Research Centre.
We are also grateful to Queen Square Genomics at the Institute of Neurology University
College London, supported by the National Institute for Health Research University
College London Hospitals Biomedical Research Centre, for the bioinformatics support.
For the purpose of Open Access, the author has applied a CC BY public copyright
license to any Author Accepted Manuscript version arising from this submission.\r\nThis
study was funded by the Medical Research Council (MR/S01165X/1, MR/S005021/1, G0601943).
The Medical Research Council (MR/S01165X/1, MR/S005021/1, MRC ICGNMD), Wellcome
Trust 221951/Z/20/Z, Global Parkinson’s Genetics Program, Aligning Science Across
Parkinson’s, The Michael J. Fox Foundation, The National Institute for Health Research
University College London Hospitals Biomedical Research Centre, Rosetree Trust,
Multiple System Atrophy Trust, Brain Research UK, Sparks Great Ormond Street Hospital
Charity, Muscular Dystrophy, Muscular Dystrophy Association United States of America,
and King Baudouin Foundation. H.T. was supported by the European Union’s Seventh
Framework Programme for research, technological development and demonstration under
grant agreement no. 608473. M.S.A.-H. is funded by the Science and Technology Development
Fund Academy of Science Research and Technology Egypt (Grant number: 33492, Ethical
approval number: 20066). R.W.T. is funded by the Wellcome Centre for Mitochondrial
Research (203105/Z/16/Z), the Mitochondrial Disease Patient Cohort (UK) (G0800674),
the Medical Research Council International Centre for Genomic Medicine in Neuromuscular
Disease (MR/S005021/1), the Medical Research Council (MR/W019027/1), the Lily Foundation,
Mito Foundation, the Pathological Society, LifeArc, the UK National Institute for
Health Research Biomedical Research Centre for Ageing and Age-related disease award
to the Newcastle upon Tyne Foundation Hospitals NHS Trust and the UK NHS Highly
Specialised Service for Rare Mitochondrial Disorders of Adults and Children. H.H.
and R.K. are supported by Global Parkinson’s Genetic Program and The Michael J.
Fox Foundation Grant ID: MJFF-022153."
article_number: fcae453
article_processing_charge: Yes
article_type: original
author:
- first_name: Rauan
full_name: Kaiyrzhanov, Rauan
last_name: Kaiyrzhanov
- first_name: Kyle
full_name: Thompson, Kyle
last_name: Thompson
- first_name: Stephanie
full_name: Efthymiou, Stephanie
last_name: Efthymiou
- first_name: Askhat
full_name: Mukushev, Askhat
last_name: Mukushev
- first_name: Akbota
full_name: Zharylkassyn, Akbota
last_name: Zharylkassyn
- first_name: Chitra
full_name: Prasad, Chitra
last_name: Prasad
- first_name: Ehsan Ghayoor
full_name: Karimiani, Ehsan Ghayoor
last_name: Karimiani
- first_name: Javeria Raza
full_name: Alvi, Javeria Raza
last_name: Alvi
- first_name: Dmitriy
full_name: Niyazov, Dmitriy
last_name: Niyazov
- first_name: Ahmad
full_name: Alahmad, Ahmad
last_name: Alahmad
- first_name: Meisam
full_name: Babaei, Meisam
last_name: Babaei
- first_name: Homa
full_name: Tajsharghi, Homa
last_name: Tajsharghi
- first_name: Buthaina
full_name: Albash, Buthaina
last_name: Albash
- first_name: Ahmad
full_name: Alaqeel, Ahmad
last_name: Alaqeel
- first_name: Majida
full_name: Charif, Majida
last_name: Charif
- first_name: Narges
full_name: Hashemi, Narges
last_name: Hashemi
- first_name: Morteza
full_name: Heidari, Morteza
last_name: Heidari
- first_name: Seyed Mehdi
full_name: Kalantar, Seyed Mehdi
last_name: Kalantar
- first_name: Guy
full_name: Lenaers, Guy
last_name: Lenaers
- first_name: Mohammad Yahya Vahidi
full_name: Mehrjardi, Mohammad Yahya Vahidi
last_name: Mehrjardi
- first_name: Varunvenkat M.
full_name: Srinivasan, Varunvenkat M.
last_name: Srinivasan
- first_name: Vykuntaraju K.
full_name: Gowda, Vykuntaraju K.
last_name: Gowda
- first_name: Seyed Hamidreza
full_name: Mirabutalebi, Seyed Hamidreza
last_name: Mirabutalebi
- first_name: Deanna Alexis
full_name: Carere, Deanna Alexis
last_name: Carere
- first_name: Mojtaba
full_name: Movahedinia, Mojtaba
last_name: Movahedinia
- first_name: David
full_name: Murphy, David
last_name: Murphy
- first_name: Robert
full_name: Mcfarland, Robert
last_name: Mcfarland
- first_name: Mohamed S.
full_name: Abdel-Hamid, Mohamed S.
last_name: Abdel-Hamid
- first_name: Rasha M.
full_name: Elhossini, Rasha M.
last_name: Elhossini
- first_name: Shahryar
full_name: Alavi, Shahryar
last_name: Alavi
- first_name: Melanie
full_name: Napier, Melanie
last_name: Napier
- first_name: Amaya
full_name: Belanger-Quintana, Amaya
last_name: Belanger-Quintana
- first_name: Asuri N.
full_name: Prasad, Asuri N.
last_name: Prasad
- first_name: Jessica
full_name: Jakobczyk, Jessica
last_name: Jakobczyk
- first_name: Agathe
full_name: Roubertie, Agathe
last_name: Roubertie
- first_name: Tony
full_name: Rupar, Tony
last_name: Rupar
- first_name: Tipu
full_name: Sultan, Tipu
last_name: Sultan
- first_name: Mehran Beiraghi
full_name: Toosi, Mehran Beiraghi
last_name: Toosi
- first_name: Leonid A
full_name: Sazanov, Leonid A
id: 338D39FE-F248-11E8-B48F-1D18A9856A87
last_name: Sazanov
orcid: 0000-0002-0977-7989
- first_name: Mariasavina
full_name: Severino, Mariasavina
last_name: Severino
- first_name: Henry
full_name: Houlden, Henry
last_name: Houlden
- first_name: Robert W.
full_name: Taylor, Robert W.
last_name: Taylor
- first_name: Reza
full_name: Maroofian, Reza
last_name: Maroofian
citation:
ama: Kaiyrzhanov R, Thompson K, Efthymiou S, et al. Biallelic NDUFA13 variants lead
to a neurodevelopmental phenotype with gradual neurological impairment. Brain
Communications. 2025;7(1). doi:10.1093/braincomms/fcae453
apa: Kaiyrzhanov, R., Thompson, K., Efthymiou, S., Mukushev, A., Zharylkassyn, A.,
Prasad, C., … Maroofian, R. (2025). Biallelic NDUFA13 variants lead to a neurodevelopmental
phenotype with gradual neurological impairment. Brain Communications. Oxford
University Press. https://doi.org/10.1093/braincomms/fcae453
chicago: Kaiyrzhanov, Rauan, Kyle Thompson, Stephanie Efthymiou, Askhat Mukushev,
Akbota Zharylkassyn, Chitra Prasad, Ehsan Ghayoor Karimiani, et al. “Biallelic
NDUFA13 Variants Lead to a Neurodevelopmental Phenotype with Gradual Neurological
Impairment.” Brain Communications. Oxford University Press, 2025. https://doi.org/10.1093/braincomms/fcae453.
ieee: R. Kaiyrzhanov et al., “Biallelic NDUFA13 variants lead to a neurodevelopmental
phenotype with gradual neurological impairment,” Brain Communications,
vol. 7, no. 1. Oxford University Press, 2025.
ista: Kaiyrzhanov R, Thompson K, Efthymiou S, Mukushev A, Zharylkassyn A, Prasad
C, Karimiani EG, Alvi JR, Niyazov D, Alahmad A, Babaei M, Tajsharghi H, Albash
B, Alaqeel A, Charif M, Hashemi N, Heidari M, Kalantar SM, Lenaers G, Mehrjardi
MYV, Srinivasan VM, Gowda VK, Mirabutalebi SH, Carere DA, Movahedinia M, Murphy
D, Mcfarland R, Abdel-Hamid MS, Elhossini RM, Alavi S, Napier M, Belanger-Quintana
A, Prasad AN, Jakobczyk J, Roubertie A, Rupar T, Sultan T, Toosi MB, Sazanov LA,
Severino M, Houlden H, Taylor RW, Maroofian R. 2025. Biallelic NDUFA13 variants
lead to a neurodevelopmental phenotype with gradual neurological impairment. Brain
Communications. 7(1), fcae453.
mla: Kaiyrzhanov, Rauan, et al. “Biallelic NDUFA13 Variants Lead to a Neurodevelopmental
Phenotype with Gradual Neurological Impairment.” Brain Communications,
vol. 7, no. 1, fcae453, Oxford University Press, 2025, doi:10.1093/braincomms/fcae453.
short: R. Kaiyrzhanov, K. Thompson, S. Efthymiou, A. Mukushev, A. Zharylkassyn,
C. Prasad, E.G. Karimiani, J.R. Alvi, D. Niyazov, A. Alahmad, M. Babaei, H. Tajsharghi,
B. Albash, A. Alaqeel, M. Charif, N. Hashemi, M. Heidari, S.M. Kalantar, G. Lenaers,
M.Y.V. Mehrjardi, V.M. Srinivasan, V.K. Gowda, S.H. Mirabutalebi, D.A. Carere,
M. Movahedinia, D. Murphy, R. Mcfarland, M.S. Abdel-Hamid, R.M. Elhossini, S.
Alavi, M. Napier, A. Belanger-Quintana, A.N. Prasad, J. Jakobczyk, A. Roubertie,
T. Rupar, T. Sultan, M.B. Toosi, L.A. Sazanov, M. Severino, H. Houlden, R.W. Taylor,
R. Maroofian, Brain Communications 7 (2025).
date_created: 2025-02-02T23:01:55Z
date_published: 2025-01-01T00:00:00Z
date_updated: 2025-08-05T11:55:15Z
day: '01'
ddc:
- '570'
department:
- _id: LeSa
doi: 10.1093/braincomms/fcae453
external_id:
pmid:
- '39963288'
file:
- access_level: open_access
checksum: bdf39b64d1c1d833a20b62836751fe44
content_type: application/pdf
creator: dernst
date_created: 2025-08-05T11:54:23Z
date_updated: 2025-08-05T11:54:23Z
file_id: '20126'
file_name: 2025_BrainComm_Kaiyrzhanov.pdf
file_size: 1420646
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pmid: 1
publication: Brain Communications
publication_identifier:
eissn:
- 2632-1297
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Biallelic NDUFA13 variants lead to a neurodevelopmental phenotype with gradual
neurological impairment
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 7
year: '2025'
...
---
OA_place: repository
OA_type: gold
_id: '18991'
abstract:
- lang: eng
text: Research data for the article "Learning reshapes the hippocampal representation
hierarchy" from Chiossi et al. (PNAS, 2025). The data includes hippocampal CA1
unit activity and behaviour tracking of 5 Long Evans rats during the learning
of an associative memory task. Detailed information can be found in the 'readme.txt'
file.
acknowledged_ssus:
- _id: PreCl
- _id: M-Shop
acknowledgement: Thanks to Rebecca Morse for performing one of the experiments under
H.S.C.C. supervision and Jago Wallenschus for technical support, especially with
maze design.
article_processing_charge: No
author:
- first_name: Heloisa
full_name: Chiossi, Heloisa
id: 2BBA502C-F248-11E8-B48F-1D18A9856A87
last_name: Chiossi
orcid: 0009-0004-2973-278X
citation:
ama: Chiossi HSC. Research data for the publication “Learning reshapes the hippocampal
representation hierarchy.” 2025. doi:10.15479/AT:ISTA:18991
apa: Chiossi, H. S. C. (2025). Research data for the publication “Learning reshapes
the hippocampal representation hierarchy.” Institute of Science and Technology
Austria. https://doi.org/10.15479/AT:ISTA:18991
chicago: Chiossi, Heloisa S. C. “Research Data for the Publication ‘Learning Reshapes
the Hippocampal Representation Hierarchy.’” Institute of Science and Technology
Austria, 2025. https://doi.org/10.15479/AT:ISTA:18991.
ieee: H. S. C. Chiossi, “Research data for the publication ‘Learning reshapes the
hippocampal representation hierarchy.’” Institute of Science and Technology Austria,
2025.
ista: Chiossi HSC. 2025. Research data for the publication ‘Learning reshapes the
hippocampal representation hierarchy’, Institute of Science and Technology Austria,
10.15479/AT:ISTA:18991.
mla: Chiossi, Heloisa S. C. Research Data for the Publication “Learning Reshapes
the Hippocampal Representation Hierarchy.” Institute of Science and Technology
Austria, 2025, doi:10.15479/AT:ISTA:18991.
short: H.S.C. Chiossi, (2025).
contributor:
- contributor_type: researcher
first_name: Michele
id: 30BD0376-F248-11E8-B48F-1D18A9856A87
last_name: Nardin
orcid: 0000-0001-8849-6570
- contributor_type: supervisor
first_name: Gašper
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkačik
orcid: 0000-0002-6699-1455
- contributor_type: supervisor
first_name: Jozsef L
id: 3FA14672-F248-11E8-B48F-1D18A9856A87
last_name: Csicsvari
orcid: 0000-0002-5193-4036
corr_author: '1'
date_created: 2025-02-04T10:36:18Z
date_published: 2025-02-04T00:00:00Z
date_updated: 2026-05-06T13:12:00Z
day: '04'
ddc:
- '570'
department:
- _id: GradSch
- _id: JoCs
- _id: GaTk
doi: 10.15479/AT:ISTA:18991
file:
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checksum: 04d761ed42e8879abffde04a560409ce
content_type: application/zip
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file_id: '18993'
file_name: readme.txt
file_size: 3215
relation: main_file
success: 1
file_date_updated: 2025-02-04T10:18:33Z
has_accepted_license: '1'
keyword:
- hippocampus
- electrophysiology
- behavior
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '02'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
related_material:
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relation: used_in_publication
status: public
status: public
title: Research data for the publication "Learning reshapes the hippocampal representation
hierarchy"
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '19001'
abstract:
- lang: eng
text: We consider two Hamiltonians that are close to each other, H1≈H2, and analyze
the time-decay of the corresponding Loschmidt echo M(t):=|⟨ψ0,eitH2e−itH1ψ0⟩|2
that expresses the effect of an imperfect time reversal on the initial state ψ0.
Our model Hamiltonians are deformed Wigner matrices that do not share a common
eigenbasis. The main tools for our results are two-resolvent laws for such H1
and H2.
acknowledgement: We thank Giorgio Cipolloni for helpful discussions in a closely related
joint project. Open access funding provided by Institute of Science and Technology
(IST Austria). All authors were supported by the ERC Advanced Grant “RMTBeyond”
No. 101020331.
article_number: '14'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: László
full_name: Erdös, László
id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
last_name: Erdös
orcid: 0000-0001-5366-9603
- first_name: Sven Joscha
full_name: Henheik, Sven Joscha
id: 31d731d7-d235-11ea-ad11-b50331c8d7fb
last_name: Henheik
orcid: 0000-0003-1106-327X
- first_name: Oleksii
full_name: Kolupaiev, Oleksii
id: 149b70d4-896a-11ed-bdf8-8c63fd44ca61
last_name: Kolupaiev
orcid: 0000-0003-1491-4623
citation:
ama: Erdös L, Henheik SJ, Kolupaiev O. Loschmidt echo for deformed Wigner matrices.
Letters in Mathematical Physics. 2025;115. doi:10.1007/s11005-025-01904-5
apa: Erdös, L., Henheik, S. J., & Kolupaiev, O. (2025). Loschmidt echo for deformed
Wigner matrices. Letters in Mathematical Physics. Springer Nature. https://doi.org/10.1007/s11005-025-01904-5
chicago: Erdös, László, Sven Joscha Henheik, and Oleksii Kolupaiev. “Loschmidt Echo
for Deformed Wigner Matrices.” Letters in Mathematical Physics. Springer
Nature, 2025. https://doi.org/10.1007/s11005-025-01904-5.
ieee: L. Erdös, S. J. Henheik, and O. Kolupaiev, “Loschmidt echo for deformed Wigner
matrices,” Letters in Mathematical Physics, vol. 115. Springer Nature,
2025.
ista: Erdös L, Henheik SJ, Kolupaiev O. 2025. Loschmidt echo for deformed Wigner
matrices. Letters in Mathematical Physics. 115, 14.
mla: Erdös, László, et al. “Loschmidt Echo for Deformed Wigner Matrices.” Letters
in Mathematical Physics, vol. 115, 14, Springer Nature, 2025, doi:10.1007/s11005-025-01904-5.
short: L. Erdös, S.J. Henheik, O. Kolupaiev, Letters in Mathematical Physics 115
(2025).
corr_author: '1'
date_created: 2025-02-05T06:48:29Z
date_published: 2025-01-30T00:00:00Z
date_updated: 2026-04-07T12:37:10Z
day: '30'
ddc:
- '510'
department:
- _id: LaEr
doi: 10.1007/s11005-025-01904-5
ec_funded: 1
external_id:
arxiv:
- '2410.08108'
isi:
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pmid:
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oa_version: Published Version
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project:
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call_identifier: H2020
grant_number: '101020331'
name: Random matrices beyond Wigner-Dyson-Mehta
publication: Letters in Mathematical Physics
publication_identifier:
issn:
- 1573-0530
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
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relation: dissertation_contains
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scopus_import: '1'
status: public
title: Loschmidt echo for deformed Wigner matrices
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 115
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '19002'
abstract:
- lang: eng
text: "A k-subcolouring of a graph G is a function f : V (G) → {0,...,k − 1} such
that the set of\r\nvertices coloured i induce a disjoint union of cliques. The
subchromatic number, χsub(G),\r\nis the minimum k such that G admits a k-subcolouring.
Nešetril, ˇ Ossona de Mendez,\r\nPilipczuk, and Zhu (2020), recently raised the
problem of finding tight upper bounds for\r\nχsub(G2) when G is planar. We show
that χsub(G2) ≤ 43 when G is planar, improving\r\ntheir bound of 135. We give
even better bounds when the planar graph G has larger girth.\r\nMoreover, we show
that χsub(G3) ≤ 95, improving the previous bound of 364. For these\r\nwe adapt
some recent techniques of Almulhim and Kierstead (2022), while also extending\r\nthe
decompositions of triangulated planar graphs of Van den Heuvel, Ossona de Mendez,\r\nQuiroz,
Rabinovich and Siebertz (2017), to planar graphs of arbitrary girth. Note that
these\r\ndecompositions are the precursors of the graph product structure theorem
of planar graphs.\r\nWe give improved bounds for χsub(Gp) for all p ≥ 2, whenever
G has bounded treewidth,\r\nbounded simple treewidth, bounded genus, or excludes
a clique or biclique as a minor.\r\nFor this we introduce a family of parameters
which form a gradation between the strong\r\nand the weak colouring numbers. We
give upper bounds for these parameters for graphs\r\ncoming from such classes.\r\nFinally,
we give a 2-approximation algorithm for the subchromatic number of graphs\r\nhaving
a layering in which each layer has bounded cliquewidth and this layering is\r\ncomputable
in polynomial time (like the class of all dth powers of planar graphs, for fixed\r\nd).
This algorithm works even if the power p and the graph G is unknown."
acknowledgement: We thank an anonymous referee for pointing out an error in an earlier
version of Theorem 3.1. We also thank an anonymous referee for pointing out numerous
typos in an earlier version of the paper.
article_number: '114377'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Pedro P.
full_name: Cortés, Pedro P.
last_name: Cortés
- first_name: Pankaj
full_name: Kumar, Pankaj
last_name: Kumar
- first_name: Benjamin
full_name: Moore, Benjamin
id: 6dc1a1be-bf1c-11ed-8d2b-d044840f49d6
last_name: Moore
- first_name: Patrice
full_name: Ossona de Mendez, Patrice
last_name: Ossona de Mendez
- first_name: Daniel A.
full_name: Quiroz, Daniel A.
last_name: Quiroz
citation:
ama: Cortés PP, Kumar P, Moore B, Ossona de Mendez P, Quiroz DA. Subchromatic numbers
of powers of graphs with excluded minors. Discrete Mathematics. 2025;348(4).
doi:10.1016/j.disc.2024.114377
apa: Cortés, P. P., Kumar, P., Moore, B., Ossona de Mendez, P., & Quiroz, D.
A. (2025). Subchromatic numbers of powers of graphs with excluded minors. Discrete
Mathematics. Elsevier. https://doi.org/10.1016/j.disc.2024.114377
chicago: Cortés, Pedro P., Pankaj Kumar, Benjamin Moore, Patrice Ossona de Mendez,
and Daniel A. Quiroz. “Subchromatic Numbers of Powers of Graphs with Excluded
Minors.” Discrete Mathematics. Elsevier, 2025. https://doi.org/10.1016/j.disc.2024.114377.
ieee: P. P. Cortés, P. Kumar, B. Moore, P. Ossona de Mendez, and D. A. Quiroz, “Subchromatic
numbers of powers of graphs with excluded minors,” Discrete Mathematics,
vol. 348, no. 4. Elsevier, 2025.
ista: Cortés PP, Kumar P, Moore B, Ossona de Mendez P, Quiroz DA. 2025. Subchromatic
numbers of powers of graphs with excluded minors. Discrete Mathematics. 348(4),
114377.
mla: Cortés, Pedro P., et al. “Subchromatic Numbers of Powers of Graphs with Excluded
Minors.” Discrete Mathematics, vol. 348, no. 4, 114377, Elsevier, 2025,
doi:10.1016/j.disc.2024.114377.
short: P.P. Cortés, P. Kumar, B. Moore, P. Ossona de Mendez, D.A. Quiroz, Discrete
Mathematics 348 (2025).
corr_author: '1'
date_created: 2025-02-05T06:51:08Z
date_published: 2025-04-01T00:00:00Z
date_updated: 2025-09-30T10:25:15Z
day: '01'
ddc:
- '510'
department:
- _id: MaKw
doi: 10.1016/j.disc.2024.114377
external_id:
arxiv:
- '2306.02195'
isi:
- '001401656900001'
file:
- access_level: open_access
checksum: 6723cbb02b6aea0d05f37d167da00c03
content_type: application/pdf
creator: dernst
date_created: 2025-05-05T12:56:12Z
date_updated: 2025-05-05T12:56:12Z
file_id: '19657'
file_name: 2025_DiscreteMath_Cortes.pdf
file_size: 850988
relation: main_file
success: 1
file_date_updated: 2025-05-05T12:56:12Z
has_accepted_license: '1'
intvolume: ' 348'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
publication: Discrete Mathematics
publication_identifier:
issn:
- 0012-365X
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Subchromatic numbers of powers of graphs with excluded minors
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 348
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '19003'
abstract:
- lang: eng
text: 'Super-resolution methods provide far better spatial resolution than the optical
diffraction limit of about half the wavelength of light (∼200-300 nm). Nevertheless,
they have yet to attain widespread use in plants, largely due to plants’ challenging
optical properties. Expansion microscopy improves effective resolution by isotropically
increasing the physical distances between sample structures while preserving relative
spatial arrangements and clearing the sample. However, its application to plants
has been hindered by the rigid, mechanically cohesive structure of plant tissues.
Here, we report on whole-mount expansion microscopy of thale cress (Arabidopsis
thaliana) root tissues (PlantEx), achieving a four-fold resolution increase over
conventional microscopy. Our results highlight the microtubule cytoskeleton organization
and interaction between molecularly defined cellular constituents. Combining PlantEx
with stimulated emission depletion (STED) microscopy, we increase nanoscale resolution
and visualize the complex organization of subcellular organelles from intact tissues
by example of the densely packed COPI-coated vesicles associated with the Golgi
apparatus and put these into a cellular structural context. Our results show that
expansion microscopy can be applied to increase effective imaging resolution in
Arabidopsis root specimens. '
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
- _id: E-Lib
- _id: M-Shop
acknowledgement: "We gratefully acknowledge support by the Scientific Service Units
at ISTA, including the Imaging and Optics and Lab Support facilities and the mechanical
workshop and Library. We thank Philipp Velicky for STED microscope alignment.\r\nThis
project has received funding from the European Research Council under the Horizon
2020 Framework Programme (grant agreement No 742985, J.F.). It has also received
funding from the Horizon 2020 Framework Programme under the Marie Skłodowska-Curie
Grant Agreement No. 665385 (M.G.). S.T. has received funding as an ISTplus Fellow
from the Horizon 2020 Framework Programme under Marie Skłodowska-Curie grant agreement
no. 754411 and from EMBO via a Long-Term Fellowship (grant number ALTF 679-2018).
M.R.T. received funding from the Austrian Academy of Sciences with DOC fellowship
no. 26137. The project has further received funding from the Austrian Science Fund,
via grant DK W1232 (M.R.T., N.A.D., and J.G.D). W.J. received a postdoctoral fellowship
from the Human Frontier Science Program (LT000557/2018). The funders had no role
in study design, data collection and analysis, decision to publish or preparation
of the manuscript."
article_number: koaf006
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Michelle C
full_name: Gallei, Michelle C
id: 35A03822-F248-11E8-B48F-1D18A9856A87
last_name: Gallei
orcid: 0000-0003-1286-7368
- first_name: Sven M
full_name: Truckenbrodt, Sven M
id: 45812BD4-F248-11E8-B48F-1D18A9856A87
last_name: Truckenbrodt
- first_name: Caroline
full_name: Kreuzinger, Caroline
id: 382077BA-F248-11E8-B48F-1D18A9856A87
last_name: Kreuzinger
- first_name: Syamala
full_name: Inumella, Syamala
id: F8660870-D756-11E9-98C5-34DFE5697425
last_name: Inumella
orcid: 0009-0002-5890-120X
- first_name: Vitali
full_name: Vistunou, Vitali
id: 7e146587-8972-11ed-ae7b-d7a32ea86a81
last_name: Vistunou
- first_name: Christoph M
full_name: Sommer, Christoph M
id: 4DF26D8C-F248-11E8-B48F-1D18A9856A87
last_name: Sommer
orcid: 0000-0003-1216-9105
- first_name: Mojtaba
full_name: Tavakoli, Mojtaba
id: 3A0A06F4-F248-11E8-B48F-1D18A9856A87
last_name: Tavakoli
orcid: 0000-0002-7667-6854
- first_name: Nathalie
full_name: Agudelo Duenas, Nathalie
id: 40E7F008-F248-11E8-B48F-1D18A9856A87
last_name: Agudelo Duenas
- first_name: Jakob
full_name: Vorlaufer, Jakob
id: 937696FA-C996-11E9-8C7C-CF13E6697425
last_name: Vorlaufer
orcid: 0009-0000-7590-3501
- first_name: Wiebke
full_name: Jahr, Wiebke
id: 425C1CE8-F248-11E8-B48F-1D18A9856A87
last_name: Jahr
orcid: 0000-0003-0201-2315
- first_name: Marek
full_name: Randuch, Marek
id: 6ac4636d-15b2-11ec-abd3-fb8df79972ae
last_name: Randuch
- first_name: Alexander J
full_name: Johnson, Alexander J
id: 46A62C3A-F248-11E8-B48F-1D18A9856A87
last_name: Johnson
orcid: 0000-0002-2739-8843
- first_name: Eva
full_name: Benková, Eva
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Johann G
full_name: Danzl, Johann G
id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
last_name: Danzl
orcid: 0000-0001-8559-3973
citation:
ama: Gallei MC, Truckenbrodt SM, Kreuzinger C, et al. Super-resolution expansion
microscopy in plant roots. The Plant Cell. 2025;37(4). doi:10.1093/plcell/koaf006
apa: Gallei, M. C., Truckenbrodt, S. M., Kreuzinger, C., Inumella, S., Vistunou,
V., Sommer, C. M., … Danzl, J. G. (2025). Super-resolution expansion microscopy
in plant roots. The Plant Cell. Oxford University Press. https://doi.org/10.1093/plcell/koaf006
chicago: Gallei, Michelle C, Sven M Truckenbrodt, Caroline Kreuzinger, Syamala Inumella,
Vitali Vistunou, Christoph M Sommer, Mojtaba Tavakoli, et al. “Super-Resolution
Expansion Microscopy in Plant Roots.” The Plant Cell. Oxford University
Press, 2025. https://doi.org/10.1093/plcell/koaf006.
ieee: M. C. Gallei et al., “Super-resolution expansion microscopy in plant
roots,” The Plant Cell, vol. 37, no. 4. Oxford University Press, 2025.
ista: Gallei MC, Truckenbrodt SM, Kreuzinger C, Inumella S, Vistunou V, Sommer CM,
Tavakoli M, Agudelo Duenas N, Vorlaufer J, Jahr W, Randuch M, Johnson AJ, Benková
E, Friml J, Danzl JG. 2025. Super-resolution expansion microscopy in plant roots.
The Plant Cell. 37(4), koaf006.
mla: Gallei, Michelle C., et al. “Super-Resolution Expansion Microscopy in Plant
Roots.” The Plant Cell, vol. 37, no. 4, koaf006, Oxford University Press,
2025, doi:10.1093/plcell/koaf006.
short: M.C. Gallei, S.M. Truckenbrodt, C. Kreuzinger, S. Inumella, V. Vistunou,
C.M. Sommer, M. Tavakoli, N. Agudelo Duenas, J. Vorlaufer, W. Jahr, M. Randuch,
A.J. Johnson, E. Benková, J. Friml, J.G. Danzl, The Plant Cell 37 (2025).
corr_author: '1'
date_created: 2025-02-05T06:52:06Z
date_published: 2025-04-01T00:00:00Z
date_updated: 2026-06-10T08:30:19Z
day: '01'
ddc:
- '580'
department:
- _id: EvBe
- _id: JoDa
- _id: JiFr
doi: 10.1093/plcell/koaf006
ec_funded: 1
external_id:
isi:
- '001462763100001'
pmid:
- '39792900'
file:
- access_level: open_access
checksum: 9d3f8218ff37a29f29c48a7bbe831bd3
content_type: application/pdf
creator: dernst
date_created: 2025-07-31T07:03:43Z
date_updated: 2025-07-31T07:03:43Z
file_id: '20092'
file_name: 2025_PlantCell_Gallei.pdf
file_size: 53904111
relation: main_file
success: 1
file_date_updated: 2025-07-31T07:03:43Z
has_accepted_license: '1'
intvolume: ' 37'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '742985'
name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '665385'
name: International IST Doctoral Program
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: 269B5B22-B435-11E9-9278-68D0E5697425
grant_number: ALTF 679-2018
name: UltraX - achieving sub-nanometer resolution in light microscopy using iterative
X10 microscopy in combination with nanobodies and STED
- _id: 6285a163-2b32-11ec-9570-8e204ca2dba5
grant_number: '26137'
name: Studying Organelle Structure and Function at Nanoscale Resolution with Expansion
Microscopy
- _id: 26AA4EF2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: W1232-B24
name: Molecular Drug Targets
publication: The Plant Cell
publication_identifier:
eissn:
- 1532-298X
issn:
- 1040-4651
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
related_material:
record:
- id: '18689'
relation: earlier_version
status: public
- id: '18837'
relation: research_data
status: public
scopus_import: '1'
status: public
title: Super-resolution expansion microscopy in plant roots
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 37
year: '2025'
...
---
OA_place: publisher
OA_type: gold
_id: '19010'
abstract:
- lang: eng
text: Causal representation learning aims at recovering latent causal variables
from high-dimensional observations to solve causal downstream tasks, such as predicting
the effect of new interventions or more robust classification. A plethora of methods
have been developed, each tackling carefully crafted problem settings that lead
to different types of identifiability. The folklore is that these different settings
are important, as they are often linked to different rungs of Pearl's causal hierarchy,
although not all neatly fit. Our main contribution is to show that many existing
causal representation learning approaches methodologically align the representation
to known data symmetries. Identification of the variables is guided by equivalence
classes across different "data pockets" that are not necessarily causal. This
result suggests important implications, allowing us to unify many existing approaches
in a single method that can mix and match different assumptions, including non-causal
ones, based on the invariances relevant to our application. It also significantly
benefits applicability, which we demonstrate by improving treatment effect estimation
on real-world high-dimensional ecological data. Overall, this paper clarifies
the role of causality assumptions in the discovery of causal variables and shifts
the focus to preserving data symmetries.
acknowledgement: "We thank Jiaqi Zhang, Francesco Montagna, David Lopez-Paz, Kartik
Ahuja, Thomas Kipf, Sara\r\nMagliacane, Julius von Kügelgen, Kun Zhang, and Bernhard
Schölkopf for extremely helpful discussion. Riccardo Cadei was supported by a Google
Research Scholar Award to Francesco Locatello. We acknowledge the Third Bellairs
Workshop on Causal Representation Learning held at the Bellairs Research Institute,
February 9/16, 2024, and a debate on the difference between interventions and counterfactuals
in disentanglement and CRL that took place during Dhanya Sridhar’s lecture, which
motivated us to significantly broaden the scope of the paper. We thank Dhanya and
all participants of the workshop."
article_processing_charge: No
arxiv: 1
author:
- first_name: Dingling
full_name: Yao, Dingling
id: d3e02e50-48a8-11ee-8f62-c108061797fa
last_name: Yao
- first_name: Dario
full_name: Rancati, Dario
id: feb58f2e-72ef-11ef-b75a-8f0894539cd0
last_name: Rancati
- first_name: Riccardo
full_name: Cadei, Riccardo
id: 0fa8b76f-72f0-11ef-b75a-a5da96e5ad6b
last_name: Cadei
- first_name: Marco
full_name: Fumero, Marco
id: 1c1593eb-393f-11ef-bb8e-ab4f1e979650
last_name: Fumero
- first_name: Francesco
full_name: Locatello, Francesco
id: 26cfd52f-2483-11ee-8040-88983bcc06d4
last_name: Locatello
orcid: 0000-0002-4850-0683
citation:
ama: 'Yao D, Rancati D, Cadei R, Fumero M, Locatello F. Unifying causal representation
learning with the invariance principle. In: 13th International Conference on
Learning Representations. ICLR; 2025.'
apa: 'Yao, D., Rancati, D., Cadei, R., Fumero, M., & Locatello, F. (2025). Unifying
causal representation learning with the invariance principle. In 13th International
Conference on Learning Representations. Singapore: ICLR.'
chicago: Yao, Dingling, Dario Rancati, Riccardo Cadei, Marco Fumero, and Francesco
Locatello. “Unifying Causal Representation Learning with the Invariance Principle.”
In 13th International Conference on Learning Representations. ICLR, 2025.
ieee: D. Yao, D. Rancati, R. Cadei, M. Fumero, and F. Locatello, “Unifying causal
representation learning with the invariance principle,” in 13th International
Conference on Learning Representations, Singapore, 2025.
ista: 'Yao D, Rancati D, Cadei R, Fumero M, Locatello F. 2025. Unifying causal representation
learning with the invariance principle. 13th International Conference on Learning
Representations. ICLR: International Conference on Learning Representations.'
mla: Yao, Dingling, et al. “Unifying Causal Representation Learning with the Invariance
Principle.” 13th International Conference on Learning Representations,
ICLR, 2025.
short: D. Yao, D. Rancati, R. Cadei, M. Fumero, F. Locatello, in:, 13th International
Conference on Learning Representations, ICLR, 2025.
conference:
end_date: 2025-04-28
location: Singapore
name: 'ICLR: International Conference on Learning Representations'
start_date: 2025-04-24
corr_author: '1'
date_created: 2025-02-05T09:23:25Z
date_published: 2025-01-22T00:00:00Z
date_updated: 2026-02-09T05:52:14Z
day: '22'
ddc:
- '000'
department:
- _id: FrLo
external_id:
arxiv:
- '2409.02772'
file:
- access_level: open_access
checksum: c4b5a4a644228c6d1b0283e1368bce9e
content_type: application/pdf
creator: flocatel
date_created: 2026-01-27T12:43:25Z
date_updated: 2026-01-27T12:43:25Z
file_id: '21048'
file_name: 4356_Unifying_Causal_Represent (1).pdf
file_size: 877014
relation: main_file
success: 1
file_date_updated: 2026-01-27T12:43:25Z
has_accepted_license: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
publication: 13th International Conference on Learning Representations
publication_status: published
publisher: ICLR
quality_controlled: '1'
scopus_import: '1'
status: public
title: Unifying causal representation learning with the invariance principle
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '19012'
abstract:
- lang: eng
text: False vacuum decay—the transition from a metastable quantum state to a true
vacuum state—plays an important role in quantum field theory and non-equilibrium
phenomena such as phase transitions and dynamical metastability. The non-perturbative
nature of false vacuum decay and the limited experimental access to this process
make it challenging to study, leaving several open questions regarding how true
vacuum bubbles form, move and interact. Here we observe quantized bubble formation
in real time, a key feature of false vacuum decay dynamics, using a quantum annealer
with 5,564 superconducting flux qubits. We develop an effective model that captures
both initial bubble creation and subsequent interactions, and remains accurate
under dissipation. The annealer reveals coherent scaling laws in the driven many-body
dynamics for more than 1,000 intrinsic qubit time units. This work provides a
method for investigating false vacuum dynamics of large quantum systems in quantum
annealers.
acknowledgement: J.V., D.W. and M.W. acknowledge support from the project Jülich UNified
Infrastructure for Quantum computing (JUNIQ) that has received funding from the
German Federal Ministry of Education and Research (BMBF) and the Ministry of Culture
and Science of the State of North Rhine-Westphalia. A.R. acknowledges support from
the project HPCQS (101018180) of the European High-Performance Computing Joint Undertaking
(EuroHPC JU). J.-Y.D., A.H. and Z.P. acknowledge support from the Leverhulme Trust
Research Leadership Award RL-2019-015 and EPSRC grant nos. EP/R513258/1 and EP/W026848/1.
J.-Y.D. acknowledges support from the European Union’s Horizon 2020 research and
innovation programme under the Marie Skłodowska-Curie grant agreement no.101034413.
This research was supported in part by grant no. NSF PHY-2309135 to the Kavli Institute
for Theoretical Physics (KITP). Computational portions of this research work were
carried out on ARC3 and ARC4, part of the high-performance computing facilities
at the University of Leeds. G.H. acknowledges financial support from ARIS, P1-0040
Nonequilibrium Quantum System Dynamics. We gratefully acknowledge the Jülich Supercomputing
Centre (https://www.fz-juelich.de/en/ias/jsc) for funding this project by providing
computing time on the D-Wave Advantage System JUPSI through JUNIQ. We acknowledge
helpful theoretical discussions with G. Lagnese and the quantum-simulation-related
discussions with D-Wave’s experimental team, particularly A. MacDonald, G. Poulin-Lamarre,
A. Daian and A. Berkley. We also thank V. Goliber and A. Mason for patiently organizing
and mediating the corresponding meetings that enabled the discussions with D-Wave’s
team. J.V., A.R., D.W., F.J., M.W. and K.M. gratefully acknowledge the Gauss Centre
for Supercomputing e.V. (www.gauss-centre.eu) for funding this project by providing
computing time on the GCS Supercomputer JUWELS at Jülich Supercomputing Centre (JSC).
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Jaka
full_name: Vodeb, Jaka
last_name: Vodeb
- first_name: Jean-Yves Marc
full_name: Desaules, Jean-Yves Marc
id: 6c292945-a610-11ed-9eec-c3be1ad62a80
last_name: Desaules
orcid: 0000-0002-3749-6375
- first_name: Andrew
full_name: Hallam, Andrew
last_name: Hallam
- first_name: Andrea
full_name: Rava, Andrea
last_name: Rava
- first_name: Gregor
full_name: Humar, Gregor
last_name: Humar
- first_name: Dennis
full_name: Willsch, Dennis
last_name: Willsch
- first_name: Fengping
full_name: Jin, Fengping
last_name: Jin
- first_name: Madita
full_name: Willsch, Madita
last_name: Willsch
- first_name: Kristel
full_name: Michielsen, Kristel
last_name: Michielsen
- first_name: Zlatko
full_name: Papić, Zlatko
last_name: Papić
citation:
ama: Vodeb J, Desaules J-YM, Hallam A, et al. Stirring the false vacuum via interacting
quantized bubbles on a 5,564-qubit quantum annealer. Nature Physics. 2025;21:386-392.
doi:10.1038/s41567-024-02765-w
apa: Vodeb, J., Desaules, J.-Y. M., Hallam, A., Rava, A., Humar, G., Willsch, D.,
… Papić, Z. (2025). Stirring the false vacuum via interacting quantized bubbles
on a 5,564-qubit quantum annealer. Nature Physics. Springer Nature. https://doi.org/10.1038/s41567-024-02765-w
chicago: Vodeb, Jaka, Jean-Yves Marc Desaules, Andrew Hallam, Andrea Rava, Gregor
Humar, Dennis Willsch, Fengping Jin, Madita Willsch, Kristel Michielsen, and Zlatko
Papić. “Stirring the False Vacuum via Interacting Quantized Bubbles on a 5,564-Qubit
Quantum Annealer.” Nature Physics. Springer Nature, 2025. https://doi.org/10.1038/s41567-024-02765-w.
ieee: J. Vodeb et al., “Stirring the false vacuum via interacting quantized
bubbles on a 5,564-qubit quantum annealer,” Nature Physics, vol. 21. Springer
Nature, pp. 386–392, 2025.
ista: Vodeb J, Desaules J-YM, Hallam A, Rava A, Humar G, Willsch D, Jin F, Willsch
M, Michielsen K, Papić Z. 2025. Stirring the false vacuum via interacting quantized
bubbles on a 5,564-qubit quantum annealer. Nature Physics. 21, 386–392.
mla: Vodeb, Jaka, et al. “Stirring the False Vacuum via Interacting Quantized Bubbles
on a 5,564-Qubit Quantum Annealer.” Nature Physics, vol. 21, Springer Nature,
2025, pp. 386–92, doi:10.1038/s41567-024-02765-w.
short: J. Vodeb, J.-Y.M. Desaules, A. Hallam, A. Rava, G. Humar, D. Willsch, F.
Jin, M. Willsch, K. Michielsen, Z. Papić, Nature Physics 21 (2025) 386–392.
corr_author: '1'
date_created: 2025-02-06T10:07:13Z
date_published: 2025-03-01T00:00:00Z
date_updated: 2025-09-30T10:29:15Z
day: '01'
ddc:
- '530'
department:
- _id: MaSe
doi: 10.1038/s41567-024-02765-w
ec_funded: 1
external_id:
arxiv:
- '2406.14718'
isi:
- '001412684400001'
pmid:
- '40093970'
file:
- access_level: open_access
checksum: b005ccf7448fee29c187cbc9b1944893
content_type: application/pdf
creator: dernst
date_created: 2025-08-05T11:56:53Z
date_updated: 2025-08-05T11:56:53Z
file_id: '20127'
file_name: 2025_NaturePhysics_Vodeb.pdf
file_size: 2252107
relation: main_file
success: 1
file_date_updated: 2025-08-05T11:56:53Z
has_accepted_license: '1'
intvolume: ' 21'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 386-392
pmid: 1
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
publication: Nature Physics
publication_identifier:
eissn:
- 1745-2481
issn:
- 1745-2473
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
link:
- description: News on ISTA Website
relation: press_release
url: https://ista.ac.at/en/news/dancing-bubbles-model-a-cosmic-disaster/
scopus_import: '1'
status: public
title: Stirring the false vacuum via interacting quantized bubbles on a 5,564-qubit
quantum annealer
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 21
year: '2025'
...
---
OA_type: closed access
_id: '19015'
abstract:
- lang: eng
text: When microplastics (MPs) enter water bodies, they undergo various transport
processes, including sedimentation, which can be influenced by factors such as
particle size, density, and interactions with other particles. Surface waters
contain suspended natural particles (e.g., clay and silt), which may impact MP
settling rates. Here, we investigated how the presence of suspended sediments
(SS) influenced the deposition patterns and rates of MPs in turbid waters. We
systematically analyzed the settling velocities of particles, including different
MP sizes and SS concentrations, in a plexiglass column with a camera array. For
each experimental variant, we collected data on thousands of individual MPs, strengthening
the statistical analysis of the particles’ velocities. Simultaneous measurements
of the SS flow and MPs trajectories revealed that the SS induced complex flow
patterns, with MPs spending more time in downwelling flow regions, thereby accelerating
MPs sedimentation. This effect was more pronounced when SS were aggregated. Additionally,
we found that smaller MP fragments were more affected by the fluctuations than
spheres or larger fragments. Collectively, our results provide valuable data for
future MP fate models and help to understand the sedimentation processes of MPs
in natural waters, which is crucial for assessing their environmental transport
and impact.
acknowledgement: F.P. and D.M.M. were funded through the Swiss National Science Foundation
(grant number PCEFP2_186856).
article_processing_charge: No
article_type: original
author:
- first_name: Francesco
full_name: Parrella, Francesco
last_name: Parrella
- first_name: Stefano
full_name: Brizzolara, Stefano
id: 4bbe33b8-c59a-11ee-a1af-fa33d1ac42c4
last_name: Brizzolara
- first_name: Markus
full_name: Holzner, Markus
last_name: Holzner
- first_name: Denise M.
full_name: Mitrano, Denise M.
last_name: Mitrano
citation:
ama: 'Parrella F, Brizzolara S, Holzner M, Mitrano DM. Microplastics settling in
turbid water: Impacts of sediments-induced flow patterns on particle deposition
rates. Environmental Science and Technology. 2025;59(4):2257-2265. doi:10.1021/acs.est.4c10551'
apa: 'Parrella, F., Brizzolara, S., Holzner, M., & Mitrano, D. M. (2025). Microplastics
settling in turbid water: Impacts of sediments-induced flow patterns on particle
deposition rates. Environmental Science and Technology. American Chemical
Society. https://doi.org/10.1021/acs.est.4c10551'
chicago: 'Parrella, Francesco, Stefano Brizzolara, Markus Holzner, and Denise M.
Mitrano. “Microplastics Settling in Turbid Water: Impacts of Sediments-Induced
Flow Patterns on Particle Deposition Rates.” Environmental Science and Technology.
American Chemical Society, 2025. https://doi.org/10.1021/acs.est.4c10551.'
ieee: 'F. Parrella, S. Brizzolara, M. Holzner, and D. M. Mitrano, “Microplastics
settling in turbid water: Impacts of sediments-induced flow patterns on particle
deposition rates,” Environmental Science and Technology, vol. 59, no. 4.
American Chemical Society, pp. 2257–2265, 2025.'
ista: 'Parrella F, Brizzolara S, Holzner M, Mitrano DM. 2025. Microplastics settling
in turbid water: Impacts of sediments-induced flow patterns on particle deposition
rates. Environmental Science and Technology. 59(4), 2257–2265.'
mla: 'Parrella, Francesco, et al. “Microplastics Settling in Turbid Water: Impacts
of Sediments-Induced Flow Patterns on Particle Deposition Rates.” Environmental
Science and Technology, vol. 59, no. 4, American Chemical Society, 2025, pp.
2257–65, doi:10.1021/acs.est.4c10551.'
short: F. Parrella, S. Brizzolara, M. Holzner, D.M. Mitrano, Environmental Science
and Technology 59 (2025) 2257–2265.
date_created: 2025-02-09T23:01:50Z
date_published: 2025-01-27T00:00:00Z
date_updated: 2025-09-30T10:27:26Z
day: '27'
department:
- _id: BjHo
doi: 10.1021/acs.est.4c10551
external_id:
isi:
- '001406914100001'
pmid:
- '39868426'
intvolume: ' 59'
isi: 1
issue: '4'
language:
- iso: eng
month: '01'
oa_version: None
page: 2257-2265
pmid: 1
publication: Environmental Science and Technology
publication_identifier:
eissn:
- 1520-5851
issn:
- 0013-936X
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Microplastics settling in turbid water: Impacts of sediments-induced flow
patterns on particle deposition rates'
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 59
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '19017'
abstract:
- lang: eng
text: "Let f(r)(n;s,k) denote the maximum number of edges in an n-vertex r-uniform
hypergraph containing no subgraph with k edges and at most s vertices. Brown,
Erdős and Sós [New directions in the theory of graphs (Proc. Third Ann Arbor Conf.,
Univ. Michigan 1971), pp. 53--63, Academic Press 1973] conjectured that the limit
limn→∞n−2f(3)(n;k+2,k) exists for all k. The value of the limit was previously
determined for k=2 in the original paper of Brown, Erdős and Sós, for k=3 by Glock
[Bull. Lond. Math. Soc. 51 (2019) 230--236] and for k=4 by Glock, Joos, Kim, Kühn,
Lichev and Pikhurko [arXiv:2209.14177, accepted by Proc. Amer. Math. Soc.] while
Delcourt and Postle [arXiv:2210.01105, accepted by Proc. Amer. Math. Soc.] proved
the conjecture (without determining the limiting value).\r\nIn this paper, we
determine the value of the limit in the Brown-Erdős-Sós Problem for k∈{5,6,7}.
More generally, we obtain the value of limn→∞n−2f(r)(n;rk−2k+2,k) for all r≥3
and k∈{5,6,7}. In addition, by combining these new values with recent results
of Bennett, Cushman and Dudek [arXiv:2309.00182] we obtain new asymptotic values
for several generalised Ramsey numbers."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Stefan
full_name: Glock, Stefan
last_name: Glock
- first_name: Jaehoon
full_name: Kim, Jaehoon
last_name: Kim
- first_name: Lyuben
full_name: Lichev, Lyuben
id: 9aa8388e-d003-11ee-8458-c4c1d7447977
last_name: Lichev
- first_name: Oleg
full_name: Pikhurko, Oleg
last_name: Pikhurko
- first_name: Shumin
full_name: Sun, Shumin
last_name: Sun
citation:
ama: Glock S, Kim J, Lichev L, Pikhurko O, Sun S. On the (k + 2, k)-problem of Brown,
Erdős, and Sós for k = 5,6,7. Canadian Journal of Mathematics. 2025:1-43.
doi:10.4153/s0008414x25000021
apa: Glock, S., Kim, J., Lichev, L., Pikhurko, O., & Sun, S. (2025). On the
(k + 2, k)-problem of Brown, Erdős, and Sós for k = 5,6,7. Canadian Journal
of Mathematics. Cambridge University Press. https://doi.org/10.4153/s0008414x25000021
chicago: Glock, Stefan, Jaehoon Kim, Lyuben Lichev, Oleg Pikhurko, and Shumin Sun.
“On the (k + 2, k)-Problem of Brown, Erdős, and Sós for k = 5,6,7.” Canadian
Journal of Mathematics. Cambridge University Press, 2025. https://doi.org/10.4153/s0008414x25000021.
ieee: S. Glock, J. Kim, L. Lichev, O. Pikhurko, and S. Sun, “On the (k + 2, k)-problem
of Brown, Erdős, and Sós for k = 5,6,7,” Canadian Journal of Mathematics.
Cambridge University Press, pp. 1–43, 2025.
ista: Glock S, Kim J, Lichev L, Pikhurko O, Sun S. 2025. On the (k + 2, k)-problem
of Brown, Erdős, and Sós for k = 5,6,7. Canadian Journal of Mathematics., 1–43.
mla: Glock, Stefan, et al. “On the (k + 2, k)-Problem of Brown, Erdős, and Sós for
k = 5,6,7.” Canadian Journal of Mathematics, Cambridge University Press,
2025, pp. 1–43, doi:10.4153/s0008414x25000021.
short: S. Glock, J. Kim, L. Lichev, O. Pikhurko, S. Sun, Canadian Journal of Mathematics
(2025) 1–43.
date_created: 2025-02-10T08:39:46Z
date_published: 2025-01-06T00:00:00Z
date_updated: 2025-09-30T10:28:07Z
day: '06'
ddc:
- '500'
department:
- _id: MaKw
doi: 10.4153/s0008414x25000021
external_id:
arxiv:
- '2403.04474'
isi:
- '001416788600001'
has_accepted_license: '1'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.4153/s0008414x25000021
month: '01'
oa: 1
oa_version: Published Version
page: 1-43
publication: Canadian Journal of Mathematics
publication_identifier:
eissn:
- 1496-4279
issn:
- 0008-414X
publication_status: epub_ahead
publisher: Cambridge University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: On the (k + 2, k)-problem of Brown, Erdős, and Sós for k = 5,6,7
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '19018'
abstract:
- lang: eng
text: "The online semi-random graph process is a one-player game which starts with
the empty graph on n vertices. At every round, a player (called Builder) is presented
with a vertex v chosen uniformly at random and independently from previous rounds,
and constructs an edge of their choice that is incident to v. Inspired by recent
advances on the semi-random graph process, we define a family of generalized online
semi-random models.\r\nWe analyse a particular instance that shares similar features
with the original semi-random graph process and determine the hitting times of
the classical graph properties minimum degree k,k-connectivity, containment of
a perfect matching, a Hamiltonian cycle and an \r\nH-factor for a fixed graph
H possessing an additional tree-like property. Along the way, we derive a few
consequences of the famous Aldous-Broder algorithm that may be of independent
interest."
acknowledgement: We are grateful to Dieter Mitsche for related discussions and to
several anonymous referees for multiple useful comments.
article_number: '104120'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Sofiya
full_name: Burova, Sofiya
last_name: Burova
- first_name: Lyuben
full_name: Lichev, Lyuben
id: 9aa8388e-d003-11ee-8458-c4c1d7447977
last_name: Lichev
citation:
ama: Burova S, Lichev L. The semi-random tree process. European Journal of Combinatorics.
2025;126. doi:10.1016/j.ejc.2025.104120
apa: Burova, S., & Lichev, L. (2025). The semi-random tree process. European
Journal of Combinatorics. Elsevier. https://doi.org/10.1016/j.ejc.2025.104120
chicago: Burova, Sofiya, and Lyuben Lichev. “The Semi-Random Tree Process.” European
Journal of Combinatorics. Elsevier, 2025. https://doi.org/10.1016/j.ejc.2025.104120.
ieee: S. Burova and L. Lichev, “The semi-random tree process,” European Journal
of Combinatorics, vol. 126. Elsevier, 2025.
ista: Burova S, Lichev L. 2025. The semi-random tree process. European Journal of
Combinatorics. 126, 104120.
mla: Burova, Sofiya, and Lyuben Lichev. “The Semi-Random Tree Process.” European
Journal of Combinatorics, vol. 126, 104120, Elsevier, 2025, doi:10.1016/j.ejc.2025.104120.
short: S. Burova, L. Lichev, European Journal of Combinatorics 126 (2025).
date_created: 2025-02-10T09:00:53Z
date_published: 2025-05-01T00:00:00Z
date_updated: 2025-09-30T10:28:42Z
day: '01'
department:
- _id: MaKw
doi: 10.1016/j.ejc.2025.104120
external_id:
arxiv:
- '2204.07376 '
isi:
- '001420659400001'
intvolume: ' 126'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2204.07376
month: '05'
oa: 1
oa_version: Preprint
publication: European Journal of Combinatorics
publication_identifier:
issn:
- 0195-6698
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: The semi-random tree process
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 126
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '19023'
abstract:
- lang: eng
text: 'Alcohol consumption is an important risk factor for multiple diseases. It
is typically assessed via self-report, which is open to measurement error through
recall bias. Instead, molecular data such as blood-based DNA methylation (DNAm)
could be used to derive a more objective measure of alcohol consumption by incorporating
information from cytosine-phosphate-guanine (CpG) sites known to be linked to
the trait. Here, we explore the epigenetic architecture of self-reported weekly
units of alcohol consumption in the Generation Scotland study. We first create
a blood-based epigenetic score (EpiScore) of alcohol consumption using elastic
net penalized linear regression. We explore the effect of pre-filtering for CpG
features ahead of elastic net, as well as differential patterns by sex and by
units consumed in the last week relative to an average week. The final EpiScore
was trained on 16,717 individuals and tested in four external cohorts: the Lothian
Birth Cohorts (LBC) of 1921 and 1936, the Sister Study, and the Avon Longitudinal
Study of Parents and Children (total N across studies > 10,000). The maximum Pearson
correlation between the EpiScore and self-reported alcohol consumption within
cohort ranged from 0.41 to 0.53. In LBC1936, higher EpiScore levels had significant
associations with poorer global brain imaging metrics, whereas self-reported alcohol
consumption did not. Finally, we identified two novel CpG loci via a Bayesian
penalized regression epigenome-wide association study of alcohol consumption.
Together, these findings show how DNAm can objectively characterize patterns of
alcohol consumption that associate with brain health, unlike self-reported estimates.'
acknowledgement: 'Generation Scotland: Generation Scotland received core support from
the Chief Scientist Office of the Scottish Government Health Directorates (CZD/16/6)
and the Scottish Funding Council (HR03006). Genotyping and DNA methylation profiling
of the Generation Scotland samples were carried out by the Genetics Core Laboratory
at the Edinburgh Clinical Research Facility, Edinburgh, Scotland, and were funded
by the Medical Research Council UK and the Wellcome Trust (Wellcome Trust Strategic
Award STratifying Resilience and Depression Longitudinally (STRADL; Reference 104036/Z/14/Z)
and 220857/Z/20/Z. The DNA methylation data assayed for Generation Scotland were
partially funded by a 2018 NARSAD Young Investigator Grant from the Brain & Behavior
Research Foundation (Ref: 27404; awardee: Dr David M Howard) and by a JMAS SIM fellowship
from the Royal College of Physicians of Edinburgh (Awardee: Dr Heather C Whalley).
Lothian Birth Cohorts: We thank the LBC1921 and LBC1936 participants and team members
who contributed to these studies. The LBC1921 was supported by the UK’s Biotechnology
and Biological Sciences Research Council (BBSRC), The Royal Society, and The Chief
Scientist Office of the Scottish Government. The LBC1936 is supported by the BBSRC,
and the Economic and Social Research Council [BB/W008793/1] (which supports S.E.H.),
Age UK (Disconnected Mind project), the Milton Damerel Trust, the Medical Research
Council (MR/M01311/1), and the University of Edinburgh. Methylation typing of LBC1936
was supported by the Centre for Cognitive Ageing and Cognitive Epidemiology (Pilot
Fund award), Age UK, The Wellcome Trust Institutional Strategic Support Fund, The
University of Edinburgh, and The University of Queensland. Genotyping was funded
by the BBSRC (BB/F019394/1). S.R.C. is supported by a Sir Henry Dale Fellowship
jointly funded by the Wellcome Trust and the Royal Society (Grant Number 221890/Z/20/Z).
ALSPAC: The UK Medical Research Council and Wellcome (Grant ref: 217065/Z/19/Z)
and the University of Bristol provide core support for ALSPAC. This publication
is the work of the authors and Matthew Suderman will serve as guarantors for the
contents of this paper. A comprehensive list of grants funding is available on the
ALSPAC website (http://www.bristol.ac.uk/alspac/external/documents/grant-acknowledgements.pdf).
Funding for ALSPAC DNAm measurements was supported by the Wellcome (102215/2/13/2);
the University of Bristol; the UK Economic and Social Research Council (ES/N000498/1);
the UK Medical Research Council (MC_UU_12013/1, MC_UU_12013/2); and the John Templeton
Foundation (60828). MS and PY work within the MRC Integrative Epidemiology Unit
at the University of Bristol, which is supported by the Medical Research Council
(MC_UU_00011/5). Sister Study: This research was supported by the Intramural Research
Program of the National Institutes of Health (Z01-ES049033, Z01-ES049032, Z01-ES044005).
A.D.C. was supported by a Medical Research Council PhD Studentship in Precision
Medicine with funding from the Medical Research Council Doctoral Training Program
and the University of Edinburgh College of Medicine and Veterinary Medicine. R.F.H
is supported by an MRC IEU Fellowship. M.R.R. was funded by Swiss National Science
Foundation Eccellenza Grant PCEGP3-181181 and by core funding from the Institute
of Science and Technology Austria. E.B. and R.E.M. are supported by Alzheimer’s
Society major project grant AS-PG-19b-010. This research was funded in whole, or
in part, by the Wellcome Trust (104036/Z/14/Z, 220857/Z/20/Z, and 221890/Z/20/Z).
For the purpose of open access, the author has applied a CC BY public copyright
licence to any Author Accepted Manuscript version arising from this submission.'
article_number: '14'
article_processing_charge: Yes
article_type: original
author:
- first_name: Elena
full_name: Bernabeu, Elena
last_name: Bernabeu
- first_name: Aleksandra D.
full_name: Chybowska, Aleksandra D.
last_name: Chybowska
- first_name: Jacob K.
full_name: Kresovich, Jacob K.
last_name: Kresovich
- first_name: Matthew
full_name: Suderman, Matthew
last_name: Suderman
- first_name: Daniel L.
full_name: Mccartney, Daniel L.
last_name: Mccartney
- first_name: Robert F.
full_name: Hillary, Robert F.
last_name: Hillary
- first_name: Janie
full_name: Corley, Janie
last_name: Corley
- first_name: Maria Del C.
full_name: Valdés-Hernández, Maria Del C.
last_name: Valdés-Hernández
- first_name: Susana Muñoz
full_name: Maniega, Susana Muñoz
last_name: Maniega
- first_name: Mark E.
full_name: Bastin, Mark E.
last_name: Bastin
- first_name: Joanna M.
full_name: Wardlaw, Joanna M.
last_name: Wardlaw
- first_name: Zongli
full_name: Xu, Zongli
last_name: Xu
- first_name: Dale P.
full_name: Sandler, Dale P.
last_name: Sandler
- first_name: Archie
full_name: Campbell, Archie
last_name: Campbell
- first_name: Sarah E.
full_name: Harris, Sarah E.
last_name: Harris
- first_name: Andrew M.
full_name: Mcintosh, Andrew M.
last_name: Mcintosh
- first_name: Jack A.
full_name: Taylor, Jack A.
last_name: Taylor
- first_name: Paul
full_name: Yousefi, Paul
last_name: Yousefi
- first_name: Simon R.
full_name: Cox, Simon R.
last_name: Cox
- first_name: Kathryn L.
full_name: Evans, Kathryn L.
last_name: Evans
- first_name: Matthew Richard
full_name: Robinson, Matthew Richard
id: E5D42276-F5DA-11E9-8E24-6303E6697425
last_name: Robinson
orcid: 0000-0001-8982-8813
- first_name: Catalina A.
full_name: Vallejos, Catalina A.
last_name: Vallejos
- first_name: Riccardo E.
full_name: Marioni, Riccardo E.
last_name: Marioni
citation:
ama: Bernabeu E, Chybowska AD, Kresovich JK, et al. Blood-based epigenome-wide association
study and prediction of alcohol consumption. Clinical Epigenetics. 2025;17.
doi:10.1186/s13148-025-01818-y
apa: Bernabeu, E., Chybowska, A. D., Kresovich, J. K., Suderman, M., Mccartney,
D. L., Hillary, R. F., … Marioni, R. E. (2025). Blood-based epigenome-wide association
study and prediction of alcohol consumption. Clinical Epigenetics. Springer
Nature. https://doi.org/10.1186/s13148-025-01818-y
chicago: Bernabeu, Elena, Aleksandra D. Chybowska, Jacob K. Kresovich, Matthew Suderman,
Daniel L. Mccartney, Robert F. Hillary, Janie Corley, et al. “Blood-Based Epigenome-Wide
Association Study and Prediction of Alcohol Consumption.” Clinical Epigenetics.
Springer Nature, 2025. https://doi.org/10.1186/s13148-025-01818-y.
ieee: E. Bernabeu et al., “Blood-based epigenome-wide association study and
prediction of alcohol consumption,” Clinical Epigenetics, vol. 17. Springer
Nature, 2025.
ista: Bernabeu E, Chybowska AD, Kresovich JK, Suderman M, Mccartney DL, Hillary
RF, Corley J, Valdés-Hernández MDC, Maniega SM, Bastin ME, Wardlaw JM, Xu Z, Sandler
DP, Campbell A, Harris SE, Mcintosh AM, Taylor JA, Yousefi P, Cox SR, Evans KL,
Robinson MR, Vallejos CA, Marioni RE. 2025. Blood-based epigenome-wide association
study and prediction of alcohol consumption. Clinical Epigenetics. 17, 14.
mla: Bernabeu, Elena, et al. “Blood-Based Epigenome-Wide Association Study and Prediction
of Alcohol Consumption.” Clinical Epigenetics, vol. 17, 14, Springer Nature,
2025, doi:10.1186/s13148-025-01818-y.
short: E. Bernabeu, A.D. Chybowska, J.K. Kresovich, M. Suderman, D.L. Mccartney,
R.F. Hillary, J. Corley, M.D.C. Valdés-Hernández, S.M. Maniega, M.E. Bastin, J.M.
Wardlaw, Z. Xu, D.P. Sandler, A. Campbell, S.E. Harris, A.M. Mcintosh, J.A. Taylor,
P. Yousefi, S.R. Cox, K.L. Evans, M.R. Robinson, C.A. Vallejos, R.E. Marioni,
Clinical Epigenetics 17 (2025).
date_created: 2025-02-16T23:02:33Z
date_published: 2025-01-25T00:00:00Z
date_updated: 2025-09-30T10:31:08Z
day: '25'
ddc:
- '570'
department:
- _id: MaRo
doi: 10.1186/s13148-025-01818-y
external_id:
isi:
- '001406495600001'
pmid:
- '39863868'
file:
- access_level: open_access
checksum: c32511f2d09e6c164116793e784944b8
content_type: application/pdf
creator: dernst
date_created: 2025-02-17T08:44:23Z
date_updated: 2025-02-17T08:44:23Z
file_id: '19030'
file_name: 2025_ClinicalEpigenetics_Bernabeu.pdf
file_size: 1170930
relation: main_file
success: 1
file_date_updated: 2025-02-17T08:44:23Z
has_accepted_license: '1'
intvolume: ' 17'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 9B8D11D6-BA93-11EA-9121-9846C619BF3A
grant_number: PCEGP3_181181
name: Improving estimation and prediction of common complex disease risk
publication: Clinical Epigenetics
publication_identifier:
eissn:
- 1868-7083
issn:
- 1868-7075
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Blood-based epigenome-wide association study and prediction of alcohol consumption
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 17
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '19024'
abstract:
- lang: eng
text: Aqueous two-phase systems (ATPSs), phase-separating solutions of water soluble
but mutually immiscible molecular species, offer fascinating prospects for selective
partitioning, purification, and extraction. Here, we formulate a general Brownian
dynamics based coarse-grained simulation model for an ATPS of two water soluble
but mutually immiscible polymer species. Including additional solute species into
the model is straightforward, which enables capturing the assembly and partitioning
response of, e.g., nanoparticles (NPs), additional macromolecular species, or
impurities in the ATPS. We demonstrate that the simulation model captures satisfactorily
the phase separation, partitioning, and interfacial properties of an actual ATPS
using a model ATPS in which a polymer mixture of dextran and polyethylene glycol
(PEG) phase separates, and magnetic NPs selectively partition into one of the
two polymeric phases. Phase separation and NP partitioning are characterized both
via the computational model and experimentally, under different conditions. The
simulation model captures the trends observed in the experimental system and quantitatively
links the partitioning behavior to the component species interactions. Finally,
the simulation model reveals that the ATPS interface fluctuations in systems with
magnetic NPs as a partitioned species can be controlled by the magnetic field
at length scales much smaller than those probed experimentally to date.
acknowledgement: This work was supported by the Swiss National Science Foundation
under the project no. P500PT_206916 (A.S.) and the Academy of Finland through its
Centres of Excellence Programs (2022-2029, LIBER) under projects no. 346111 and
364205 (M.S.) and 346112 and 364206 (J.T.). MPH was supported by the National Science
Foundation through the Princeton University (PCCM) Materials Research Science and
Engineering Center DMR-2011750. A.S. warmly thanks Bob Evans for extensive scientific
discussions and for his hospitality during the research visit in Bristol. Computational
resources by CSC IT Centre for Finland, the Aalto Science-IT project, and RAMI –
RawMatters Finland Infrastructure are also gratefully acknowledged.
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Alberto
full_name: Scacchi, Alberto
last_name: Scacchi
- first_name: Carlo
full_name: Rigoni, Carlo
id: c5df3b62-5f9e-11ef-ba3c-b97f5b5b5ef0
last_name: Rigoni
- first_name: Mikko
full_name: Haataja, Mikko
last_name: Haataja
- first_name: Jaakko V.I.
full_name: Timonen, Jaakko V.I.
last_name: Timonen
- first_name: Maria
full_name: Sammalkorpi, Maria
last_name: Sammalkorpi
citation:
ama: 'Scacchi A, Rigoni C, Haataja M, Timonen JVI, Sammalkorpi M. A coarse-grained
model for aqueous two-phase systems: Application to ferrofluids. Journal of
Colloid and Interface Science. 2025;686:1135-1146. doi:10.1016/j.jcis.2025.01.256'
apa: 'Scacchi, A., Rigoni, C., Haataja, M., Timonen, J. V. I., & Sammalkorpi,
M. (2025). A coarse-grained model for aqueous two-phase systems: Application to
ferrofluids. Journal of Colloid and Interface Science. Elsevier. https://doi.org/10.1016/j.jcis.2025.01.256'
chicago: 'Scacchi, Alberto, Carlo Rigoni, Mikko Haataja, Jaakko V.I. Timonen, and
Maria Sammalkorpi. “A Coarse-Grained Model for Aqueous Two-Phase Systems: Application
to Ferrofluids.” Journal of Colloid and Interface Science. Elsevier, 2025.
https://doi.org/10.1016/j.jcis.2025.01.256.'
ieee: 'A. Scacchi, C. Rigoni, M. Haataja, J. V. I. Timonen, and M. Sammalkorpi,
“A coarse-grained model for aqueous two-phase systems: Application to ferrofluids,”
Journal of Colloid and Interface Science, vol. 686. Elsevier, pp. 1135–1146,
2025.'
ista: 'Scacchi A, Rigoni C, Haataja M, Timonen JVI, Sammalkorpi M. 2025. A coarse-grained
model for aqueous two-phase systems: Application to ferrofluids. Journal of Colloid
and Interface Science. 686, 1135–1146.'
mla: 'Scacchi, Alberto, et al. “A Coarse-Grained Model for Aqueous Two-Phase Systems:
Application to Ferrofluids.” Journal of Colloid and Interface Science,
vol. 686, Elsevier, 2025, pp. 1135–46, doi:10.1016/j.jcis.2025.01.256.'
short: A. Scacchi, C. Rigoni, M. Haataja, J.V.I. Timonen, M. Sammalkorpi, Journal
of Colloid and Interface Science 686 (2025) 1135–1146.
date_created: 2025-02-16T23:02:33Z
date_published: 2025-05-15T00:00:00Z
date_updated: 2025-09-30T10:31:45Z
day: '15'
ddc:
- '540'
department:
- _id: RaKl
doi: 10.1016/j.jcis.2025.01.256
external_id:
arxiv:
- '2311.16906'
isi:
- '001426125300001'
pmid:
- '39933351'
file:
- access_level: open_access
checksum: a52b72a243a717d85c348f53898ad934
content_type: application/pdf
creator: dernst
date_created: 2025-08-05T12:07:24Z
date_updated: 2025-08-05T12:07:24Z
file_id: '20128'
file_name: 2025_JourColloidScie_Scacchi.pdf
file_size: 4212615
relation: main_file
success: 1
file_date_updated: 2025-08-05T12:07:24Z
has_accepted_license: '1'
intvolume: ' 686'
isi: 1
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 1135-1146
pmid: 1
publication: Journal of Colloid and Interface Science
publication_identifier:
eissn:
- 1095-7103
issn:
- 0021-9797
issnl:
- 0021-9797
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
record:
- id: '19033'
relation: research_data
status: public
scopus_import: '1'
status: public
title: 'A coarse-grained model for aqueous two-phase systems: Application to ferrofluids'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 686
year: '2025'
...
---
OA_place: publisher
_id: '19025'
abstract:
- lang: eng
text: 'A complete understanding of the central stars of planetary nebulae (CSPNe)
remains elusive. Over the past several decades, time-series photometry of CSPNe
has yielded significant results including, but not limited to, discoveries of
nearly 100 binary systems, insights into pulsations and winds in young white dwarfs,
and studies of stars undergoing very late thermal pulses. We have undertaken a
systematic study of optical photometric variability of cataloged CSPNe, using
the light curves from the Zwicky Transient Facility (ZTF). By applying appropriate
variability metrics, we arrive at a list of 94 highly variable CSPN candidates.
Based on the timescales of the light-curve activity, we classify the variables
broadly into short- and long-timescale variables. In this first paper in this
series, we focus on the former, which is the majority class comprising 83 objects.
We report periods for six sources for the first time, and recover several known
periodic variables. Among the aperiodic sources, most exhibit a jitter around
a median flux with a stable amplitude, and a few show outbursts. We draw attention
to WeSb 1, which shows a different kind of variability: prominent deep and aperiodic
dips, resembling transits from a dust/debris disk. We find strong evidence for
a binary nature of WeSb 1 (possibly an F-type subgiant companion). The compactness
of the emission lines and inferred high electron densities make WeSb 1 a candidate
for either an EGB 6-type planetary nucleus, or a symbiotic system inside an evolved
planetary nebula, both of which are rare objects. To demonstrate further promise
with ZTF, we report three additional newly identified periodic sources that do
not appear in the list of highly variable sources. Finally, we also introduce
a two-dimensional metric space defined by the von Neumann statistics and Pearson
Skew and demonstrate its effectiveness in identifying unique variables of astrophysical
interest, like WeSb 1.'
acknowledgement: "This work is based on observations obtained with the Samuel Oschin
Telescope 48 inch and the 60 inch Telescope at the Palomar Observatory as part of
the Zwicky Transient Facility project. ZTF is supported by the National Science
Foundation under grants No. AST-1440341 and AST-2034437 and a collaboration including
current partners Caltech, IPAC, the Oskar Klein Center at Stockholm University,
the University of Maryland, University of California, Berkeley, the University of
Wisconsin at Milwaukee, University of Warwick, Ruhr University Bochum, Cornell University,
Northwestern University, and Drexel University. Operations are conducted by COO,
IPAC, and UW.\r\n\r\nThis work has made use of data from the European Space Agency
(ESA) mission Gaia (https://www.cosmos.esa.int/gaia), processed by the Gaia Data
Processing and Analysis Consortium (DPAC; https://www.cosmos.esa.int/web/gaia/dpac/consortium).
Funding for the DPAC has been provided by national institutions, in particular,
the institutions participating in the Gaia Multilateral Agreement.\r\n\r\nWe are
grateful to the staffs of Palomar Observatory and the Hobby-Eberly Telescope for
assistance with the observations and data management. The Liverpool Telescope is
operated on the island of La Palma by Liverpool John Moores University in the Spanish
Observatorio del Roque de los Muchachos of the Instituto de Astrofisica de Canarias
with financial support from the UK Science and Technology Facilities Council.\r\n\r\nThe
Low-Resolution Spectrograph 2 (LRS2) on HET was developed and funded by the University
of Texas at Austin McDonald Observatory and Department of Astronomy, and by Pennsylvania
State University. We thank the Leibniz-Institut für Astrophysik Potsdam (AIP) and
the Institut für Astrophysik Göttingen (IAG) for their contributions to the construction
of the integral field units. We acknowledge the Texas Advanced Computing Center
(TACC) at The University of Texas at Austin for providing high performance computing,
visualization, and storage resources that have contributed to the results reported
within this paper.\r\n\r\nWe thank the anonymous referee for the detailed comments,
which improved the clarity of the manuscript significantly. We also thank Gunter
Cibis for pointing out typographical errors in the names of a few PNe in the first
draft. S.B. expresses gratitude to Kishalay De for providing the Gattini-IR and
WISE data. S.B. thanks Frank J. Masci and Zachary P. Vanderbosch for useful discussions
and suggestions regarding solving the issues with ZTF forced photometry on extended
sources. S.B. also thanks Jim Fuller, Charles C. Steidel, Lynne Hillenbrand, and
Adolfo Carvalho for useful discussions on methods and science. S.B. also thanks
David O. Cook for providing access to his CLU image cutout service to generate the
WeSb 1 image. S.B. acknowledges the financial support from the Wallace L. W. Sargent
Graduate Fellowship during the first year of his graduate studies at Caltech. N.C.
was supported through the Cancer Research UK grant A24042. S.B. thanks Martina Veresvarka
for drawing our attention to the TESS light curves of WeSb 1.\r\n\r\nWe have used
Python packages Numpy (Harris et al. 2020), SciPy (Virtanen et al. 2020), Matplotlib
(Hunter 2007), Pandas (pandas development team 2020), Astropy (Astropy Collaboration
et al. 2013, 2018), and Astroquery (Ginsburg et al. 2019) at various stages of this
research."
article_number: '024201'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Soumyadeep
full_name: Bhattacharjee, Soumyadeep
last_name: Bhattacharjee
- first_name: S. R.
full_name: Kulkarni, S. R.
last_name: Kulkarni
- first_name: Albert K.H.
full_name: Kong, Albert K.H.
last_name: Kong
- first_name: M. S.
full_name: Tam, M. S.
last_name: Tam
- first_name: Howard E.
full_name: Bond, Howard E.
last_name: Bond
- first_name: Kareem
full_name: El-Badry, Kareem
last_name: El-Badry
- first_name: Ilaria
full_name: Caiazzo, Ilaria
id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d
last_name: Caiazzo
orcid: 0000-0002-4770-5388
- first_name: Nicholas
full_name: Chornay, Nicholas
last_name: Chornay
- first_name: Matthew J.
full_name: Graham, Matthew J.
last_name: Graham
- first_name: Antonio C.
full_name: Rodriguez, Antonio C.
last_name: Rodriguez
- first_name: Gregory R.
full_name: Zeimann, Gregory R.
last_name: Zeimann
- first_name: Christoffer
full_name: Fremling, Christoffer
last_name: Fremling
- first_name: Andrew J.
full_name: Drake, Andrew J.
last_name: Drake
- first_name: Klaus
full_name: Werner, Klaus
last_name: Werner
- first_name: Hector
full_name: Rodriguez, Hector
last_name: Rodriguez
- first_name: Thomas A.
full_name: Prince, Thomas A.
last_name: Prince
- first_name: Russ R.
full_name: Laher, Russ R.
last_name: Laher
- first_name: Tracy X.
full_name: Chen, Tracy X.
last_name: Chen
- first_name: Reed
full_name: Riddle, Reed
last_name: Riddle
citation:
ama: Bhattacharjee S, Kulkarni SR, Kong AKH, et al. Variability of central stars
of planetary nebulae with the zwicky transient facility. I. Methods, short-timescale
variables, and the unusual nucleus of WeSb 1. Publications of the Astronomical
Society of the Pacific. 2025;137(2). doi:10.1088/1538-3873/ada702
apa: Bhattacharjee, S., Kulkarni, S. R., Kong, A. K. H., Tam, M. S., Bond, H. E.,
El-Badry, K., … Riddle, R. (2025). Variability of central stars of planetary nebulae
with the zwicky transient facility. I. Methods, short-timescale variables, and
the unusual nucleus of WeSb 1. Publications of the Astronomical Society of
the Pacific. IOP Publishing. https://doi.org/10.1088/1538-3873/ada702
chicago: Bhattacharjee, Soumyadeep, S. R. Kulkarni, Albert K.H. Kong, M. S. Tam,
Howard E. Bond, Kareem El-Badry, Ilaria Caiazzo, et al. “Variability of Central
Stars of Planetary Nebulae with the Zwicky Transient Facility. I. Methods, Short-Timescale
Variables, and the Unusual Nucleus of WeSb 1.” Publications of the Astronomical
Society of the Pacific. IOP Publishing, 2025. https://doi.org/10.1088/1538-3873/ada702.
ieee: S. Bhattacharjee et al., “Variability of central stars of planetary
nebulae with the zwicky transient facility. I. Methods, short-timescale variables,
and the unusual nucleus of WeSb 1,” Publications of the Astronomical Society
of the Pacific, vol. 137, no. 2. IOP Publishing, 2025.
ista: Bhattacharjee S, Kulkarni SR, Kong AKH, Tam MS, Bond HE, El-Badry K, Caiazzo
I, Chornay N, Graham MJ, Rodriguez AC, Zeimann GR, Fremling C, Drake AJ, Werner
K, Rodriguez H, Prince TA, Laher RR, Chen TX, Riddle R. 2025. Variability of central
stars of planetary nebulae with the zwicky transient facility. I. Methods, short-timescale
variables, and the unusual nucleus of WeSb 1. Publications of the Astronomical
Society of the Pacific. 137(2), 024201.
mla: Bhattacharjee, Soumyadeep, et al. “Variability of Central Stars of Planetary
Nebulae with the Zwicky Transient Facility. I. Methods, Short-Timescale Variables,
and the Unusual Nucleus of WeSb 1.” Publications of the Astronomical Society
of the Pacific, vol. 137, no. 2, 024201, IOP Publishing, 2025, doi:10.1088/1538-3873/ada702.
short: S. Bhattacharjee, S.R. Kulkarni, A.K.H. Kong, M.S. Tam, H.E. Bond, K. El-Badry,
I. Caiazzo, N. Chornay, M.J. Graham, A.C. Rodriguez, G.R. Zeimann, C. Fremling,
A.J. Drake, K. Werner, H. Rodriguez, T.A. Prince, R.R. Laher, T.X. Chen, R. Riddle,
Publications of the Astronomical Society of the Pacific 137 (2025).
date_created: 2025-02-16T23:02:33Z
date_published: 2025-02-01T00:00:00Z
date_updated: 2025-09-30T10:32:17Z
day: '01'
ddc:
- '520'
department:
- _id: IlCa
doi: 10.1088/1538-3873/ada702
external_id:
arxiv:
- '2410.03589'
isi:
- '001416903300001'
file:
- access_level: open_access
checksum: 42b942ee1bf32ed225024e168174be92
content_type: application/pdf
creator: dernst
date_created: 2025-02-17T09:13:41Z
date_updated: 2025-02-17T09:13:41Z
file_id: '19034'
file_name: 2025_PASP_Bhattacharjee.pdf
file_size: 3657568
relation: main_file
success: 1
file_date_updated: 2025-02-17T09:13:41Z
has_accepted_license: '1'
intvolume: ' 137'
isi: 1
issue: '2'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/3.0/
month: '02'
oa: 1
oa_version: Published Version
publication: Publications of the Astronomical Society of the Pacific
publication_identifier:
issn:
- 0004-6280
issnl:
- 0004-6280
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
related_material:
link:
- relation: erratum
url: https://doi.org/10.1088/1538-3873/adbcd8
scopus_import: '1'
status: public
title: Variability of central stars of planetary nebulae with the zwicky transient
facility. I. Methods, short-timescale variables, and the unusual nucleus of WeSb
1
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/3.0/legalcode
name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)
short: CC BY (3.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 137
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '19026'
abstract:
- lang: eng
text: The back-action damping of mechanical motion by electromagnetic radiation
is typically overwhelmed by internal loss channels unless demanding experimental
ingredients such as superconducting resonators, high-quality optical cavities,
or large magnetic fields are employed. Here we demonstrate the first room temperature,
cavity-free, all-electric device where back-action damping exceeds internal loss,
enabled by a mechanically compliant parallel-plate capacitor with a nanoscale
plate separation and an aspect ratio exceeding 1,000. The device has 4 orders
of magnitude lower insertion loss than a comparable commercial quartz crystal
and achieves a position imprecision rivaling optical interferometers. With the
help of a back-action isolation scheme, we observe radiative cooling of mechanical
motion by a remote cryogenic load. This work provides a technologically accessible
route to high-precision sensing, transduction, and signal processing.
acknowledged_ssus:
- _id: M-Shop
- _id: NanoFab
acknowledgement: We thank Carissa Kumar and Vibha Padmanabhan for assistance in comparing
performance with devices across the literature. We thank Andrew Cleland for helpful
comments on this work. We are grateful for support from the Miba Machine Shop and
Nanofabrication facility at IST Austria. This work was supported by the Austrian
FWF grant P33692–N and includes a recipient of a DOC Fellowship of the Austrian
Academy of Sciences (DOC – No. 26088) at the Institute of Science and Technology,
Austria.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Denise
full_name: Puglia, Denise
id: 4D495994-AE37-11E9-AC72-31CAE5697425
last_name: Puglia
orcid: 0000-0003-1144-2763
- first_name: Rachel H
full_name: Odessey, Rachel H
id: 9a7a5123-8972-11ed-ae7b-dd1f2af457bd
last_name: Odessey
- first_name: Peter
full_name: Burns, Peter
last_name: Burns
- first_name: Niklas
full_name: Luhmann, Niklas
last_name: Luhmann
- first_name: Silvan
full_name: Schmid, Silvan
last_name: Schmid
- first_name: Andrew P
full_name: Higginbotham, Andrew P
id: 4AD6785A-F248-11E8-B48F-1D18A9856A87
last_name: Higginbotham
orcid: 0000-0003-2607-2363
citation:
ama: Puglia D, Odessey RH, Burns P, Luhmann N, Schmid S, Higginbotham AP. Room temperature,
cavity-free capacitive strong coupling to mechanical motion. Nano Letters.
2025;25(7):2749-2755. doi:10.1021/acs.nanolett.4c05796
apa: Puglia, D., Odessey, R. H., Burns, P., Luhmann, N., Schmid, S., & Higginbotham,
A. P. (2025). Room temperature, cavity-free capacitive strong coupling to mechanical
motion. Nano Letters. American Chemical Society. https://doi.org/10.1021/acs.nanolett.4c05796
chicago: Puglia, Denise, Rachel H Odessey, Peter Burns, Niklas Luhmann, Silvan Schmid,
and Andrew P Higginbotham. “Room Temperature, Cavity-Free Capacitive Strong Coupling
to Mechanical Motion.” Nano Letters. American Chemical Society, 2025. https://doi.org/10.1021/acs.nanolett.4c05796.
ieee: D. Puglia, R. H. Odessey, P. Burns, N. Luhmann, S. Schmid, and A. P. Higginbotham,
“Room temperature, cavity-free capacitive strong coupling to mechanical motion,”
Nano Letters, vol. 25, no. 7. American Chemical Society, pp. 2749–2755,
2025.
ista: Puglia D, Odessey RH, Burns P, Luhmann N, Schmid S, Higginbotham AP. 2025.
Room temperature, cavity-free capacitive strong coupling to mechanical motion.
Nano Letters. 25(7), 2749–2755.
mla: Puglia, Denise, et al. “Room Temperature, Cavity-Free Capacitive Strong Coupling
to Mechanical Motion.” Nano Letters, vol. 25, no. 7, American Chemical
Society, 2025, pp. 2749–55, doi:10.1021/acs.nanolett.4c05796.
short: D. Puglia, R.H. Odessey, P. Burns, N. Luhmann, S. Schmid, A.P. Higginbotham,
Nano Letters 25 (2025) 2749–2755.
corr_author: '1'
date_created: 2025-02-16T23:02:34Z
date_published: 2025-02-06T00:00:00Z
date_updated: 2025-09-30T10:29:58Z
day: '06'
department:
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doi: 10.1021/acs.nanolett.4c05796
external_id:
arxiv:
- '2407.15314'
isi:
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intvolume: ' 25'
isi: 1
issue: '7'
language:
- iso: eng
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url: https://doi.org/10.48550/arXiv.2407.15314
month: '02'
oa: 1
oa_version: Preprint
page: 2749-2755
project:
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name: Cavity electromechanics across a quantum phase transition
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publication: Nano Letters
publication_identifier:
eissn:
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publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
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scopus_import: '1'
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title: Room temperature, cavity-free capacitive strong coupling to mechanical motion
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 25
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
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abstract:
- lang: eng
text: 'Stochastic PDEs of fluctuating hydrodynamics are a powerful tool for the
description of fluctuations in many-particle systems. In this paper, we develop
and analyze a multilevel Monte Carlo (MLMC) scheme for the Dean–Kawasaki equation,
a pivotal representative of this class of SPDEs. We prove analytically and demonstrate
numerically that our MLMC scheme provides a significant reduction in computational
cost (with respect to a standard Monte Carlo method) in the simulation of the
Dean–Kawasaki equation. Specifically, we link this reduction in cost to having
a sufficiently large average particle density and show that sizeable cost reductions
can be obtained even when we have solutions with regions of low density. Numerical
simulations are provided in the two-dimensional case, confirming our theoretical
predictions. Our results are formulated entirely in terms of the law of distributions
rather than in terms of strong spatial norms: this crucially allows for MLMC speed-ups
altogether despite the Dean–Kawasaki equation being highly singular.'
acknowledgement: The work of the authors was supported by the Austrian Science Fund
(FWF) projectF65.
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Federico
full_name: Cornalba, Federico
id: 2CEB641C-A400-11E9-A717-D712E6697425
last_name: Cornalba
orcid: 0000-0002-6269-5149
- first_name: Julian L
full_name: Fischer, Julian L
id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87
last_name: Fischer
orcid: 0000-0002-0479-558X
citation:
ama: Cornalba F, Fischer JL. Multilevel Monte Carlo methods for the Dean–Kawasaki
equation from fluctuating hydrodynamics. SIAM Journal on Numerical Analysis.
2025;63(1):262-287. doi:10.1137/23M1617345
apa: Cornalba, F., & Fischer, J. L. (2025). Multilevel Monte Carlo methods for
the Dean–Kawasaki equation from fluctuating hydrodynamics. SIAM Journal on
Numerical Analysis. Society for Industrial and Applied Mathematics. https://doi.org/10.1137/23M1617345
chicago: Cornalba, Federico, and Julian L Fischer. “Multilevel Monte Carlo Methods
for the Dean–Kawasaki Equation from Fluctuating Hydrodynamics.” SIAM Journal
on Numerical Analysis. Society for Industrial and Applied Mathematics, 2025.
https://doi.org/10.1137/23M1617345.
ieee: F. Cornalba and J. L. Fischer, “Multilevel Monte Carlo methods for the Dean–Kawasaki
equation from fluctuating hydrodynamics,” SIAM Journal on Numerical Analysis,
vol. 63, no. 1. Society for Industrial and Applied Mathematics, pp. 262–287, 2025.
ista: Cornalba F, Fischer JL. 2025. Multilevel Monte Carlo methods for the Dean–Kawasaki
equation from fluctuating hydrodynamics. SIAM Journal on Numerical Analysis. 63(1),
262–287.
mla: Cornalba, Federico, and Julian L. Fischer. “Multilevel Monte Carlo Methods
for the Dean–Kawasaki Equation from Fluctuating Hydrodynamics.” SIAM Journal
on Numerical Analysis, vol. 63, no. 1, Society for Industrial and Applied
Mathematics, 2025, pp. 262–87, doi:10.1137/23M1617345.
short: F. Cornalba, J.L. Fischer, SIAM Journal on Numerical Analysis 63 (2025) 262–287.
corr_author: '1'
date_created: 2025-02-16T23:02:34Z
date_published: 2025-02-01T00:00:00Z
date_updated: 2025-09-30T10:30:31Z
day: '01'
ddc:
- '510'
department:
- _id: JuFi
doi: 10.1137/23M1617345
external_id:
arxiv:
- '2311.08872'
isi:
- '001447583400011'
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checksum: 53505647e848ed50f7e0d00c369b14e7
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creator: dernst
date_created: 2025-02-17T08:32:23Z
date_updated: 2025-02-17T08:32:23Z
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file_name: 2025_SIAMNumerAnaly_Cornalba.pdf
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oa_version: Published Version
page: 262-287
project:
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grant_number: F6504
name: Taming Complexity in Partial Differential Systems
publication: SIAM Journal on Numerical Analysis
publication_identifier:
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issn:
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publication_status: published
publisher: Society for Industrial and Applied Mathematics
quality_controlled: '1'
scopus_import: '1'
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title: Multilevel Monte Carlo methods for the Dean–Kawasaki equation from fluctuating
hydrodynamics
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