---
_id: '446'
abstract:
- lang: eng
text: We prove that in Thomas–Fermi–Dirac–von Weizsäcker theory, a nucleus of charge
Z > 0 can bind at most Z + C electrons, where C is a universal constant. This
result is obtained through a comparison with Thomas-Fermi theory which, as a by-product,
gives bounds on the screened nuclear potential and the radius of the minimizer.
A key ingredient of the proof is a novel technique to control the particles in
the exterior region, which also applies to the liquid drop model with a nuclear
background potential.
acknowledgement: "We thank the referee for helpful suggestions that improved the presentation
of the paper. We also acknowledge partial support by National Science Foundation
Grant DMS-1363432 (R.L.F.), Austrian Science Fund (FWF) Project Nr. P 27533-N27
(P.T.N.), CONICYT (Chile) through CONICYT–PCHA/ Doctorado Nacional/2014, and Iniciativa
Científica Milenio (Chile) through Millenium Nucleus RC–120002 “Física Matemática”
(H.V.D.B.).\r\n"
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Rupert
full_name: Frank, Rupert
last_name: Frank
- first_name: Nam
full_name: Phan Thanh, Nam
id: 404092F4-F248-11E8-B48F-1D18A9856A87
last_name: Phan Thanh
- first_name: Hanne
full_name: Van Den Bosch, Hanne
last_name: Van Den Bosch
citation:
ama: Frank R, Nam P, Van Den Bosch H. The ionization conjecture in Thomas–Fermi–Dirac–von
Weizsäcker theory. Communications on Pure and Applied Mathematics. 2018;71(3):577-614.
doi:10.1002/cpa.21717
apa: Frank, R., Nam, P., & Van Den Bosch, H. (2018). The ionization conjecture
in Thomas–Fermi–Dirac–von Weizsäcker theory. Communications on Pure and Applied
Mathematics. Wiley-Blackwell. https://doi.org/10.1002/cpa.21717
chicago: Frank, Rupert, Phan Nam, and Hanne Van Den Bosch. “The Ionization Conjecture
in Thomas–Fermi–Dirac–von Weizsäcker Theory.” Communications on Pure and Applied
Mathematics. Wiley-Blackwell, 2018. https://doi.org/10.1002/cpa.21717.
ieee: R. Frank, P. Nam, and H. Van Den Bosch, “The ionization conjecture in Thomas–Fermi–Dirac–von
Weizsäcker theory,” Communications on Pure and Applied Mathematics, vol.
71, no. 3. Wiley-Blackwell, pp. 577–614, 2018.
ista: Frank R, Nam P, Van Den Bosch H. 2018. The ionization conjecture in Thomas–Fermi–Dirac–von
Weizsäcker theory. Communications on Pure and Applied Mathematics. 71(3), 577–614.
mla: Frank, Rupert, et al. “The Ionization Conjecture in Thomas–Fermi–Dirac–von
Weizsäcker Theory.” Communications on Pure and Applied Mathematics, vol.
71, no. 3, Wiley-Blackwell, 2018, pp. 577–614, doi:10.1002/cpa.21717.
short: R. Frank, P. Nam, H. Van Den Bosch, Communications on Pure and Applied Mathematics
71 (2018) 577–614.
date_created: 2018-12-11T11:46:31Z
date_published: 2018-03-01T00:00:00Z
date_updated: 2023-09-19T10:09:40Z
day: '01'
department:
- _id: RoSe
doi: 10.1002/cpa.21717
external_id:
arxiv:
- '1606.07355'
isi:
- '000422675800004'
fulldoi: https://doi.org/10.1002/cpa.21717
intvolume: ' 71'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1606.07355
month: '03'
oa: 1
oa_version: Preprint
page: 577 - 614
publication: Communications on Pure and Applied Mathematics
publication_status: published
publisher: Wiley-Blackwell
publist_id: '7377'
quality_controlled: '1'
status: public
title: The ionization conjecture in Thomas–Fermi–Dirac–von Weizsäcker theory
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 71
year: '2018'
...
---
_id: '448'
abstract:
- lang: eng
text: Around 150 million years ago, eusocial termites evolved from within the cockroaches,
50 million years before eusocial Hymenoptera, such as bees and ants, appeared.
Here, we report the 2-Gb genome of the German cockroach, Blattella germanica,
and the 1.3-Gb genome of the drywood termite Cryptotermes secundus. We show evolutionary
signatures of termite eusociality by comparing the genomes and transcriptomes
of three termites and the cockroach against the background of 16 other eusocial
and non-eusocial insects. Dramatic adaptive changes in genes underlying the production
and perception of pheromones confirm the importance of chemical communication
in the termites. These are accompanied by major changes in gene regulation and
the molecular evolution of caste determination. Many of these results parallel
molecular mechanisms of eusocial evolution in Hymenoptera. However, the specific
solutions are remarkably different, thus revealing a striking case of convergence
in one of the major evolutionary transitions in biological complexity.
acknowledgement: We thank O. Niehuis for allowing use of the unpublished E. danica
genome, J. Gadau and C. Smith for comments and advice on the manuscript, and J.
Schmitz for assistance with analyses and proofreading the manuscript. J.K. thanks
Charles Darwin University (Australia), especially S. Garnett and the Horticulture
and Aquaculture team, for providing logistic support to collect C. secundus. The
Parks and Wildlife Commission, Northern Territory, the Department of the Environment,
Water, Heritage and the Arts gave permission to collect (Permit number 36401) and
export (Permit WT2010-6997) the termites. USDA is an equal opportunity provider
and employer. M.C.H. and E.J. are supported by DFG grant BO2544/11-1 to E.B.-B.
J.K. is supported by University of Osnabrück and DFG grant KO1895/16-1. X.B. and
M.-D.P. are supported by Spanish Ministerio de Economía y Competitividad (CGL2012-36251
and CGL2015-64727-P to X.B., and CGL2016-76011-R to M.-D.P.), including FEDER funds,
and by Catalan Government (2014 SGR 619). C.S. is supported by grants from the US
Department of Housing and Urban Development (NCHHU-0017-13), the National Science
Foundation (IOS-1557864), the Alfred P. Sloan Foundation (2013-5-35 MBE), the National
Institute of Environmental Health Sciences (P30ES025128) to the Center for Human
Health and the Environment, and the Blanton J. Whitmire Endowment. M.P. is supported
by a Villum Kann Rasmussen Young Investigator Fellowship (VKR10101).
article_processing_charge: No
author:
- first_name: Mark
full_name: Harrison, Mark
last_name: Harrison
- first_name: Evelien
full_name: Jongepier, Evelien
last_name: Jongepier
- first_name: Hugh
full_name: Robertson, Hugh
last_name: Robertson
- first_name: Nicolas
full_name: Arning, Nicolas
last_name: Arning
- first_name: Tristan
full_name: Bitard Feildel, Tristan
last_name: Bitard Feildel
- first_name: Hsu
full_name: Chao, Hsu
last_name: Chao
- first_name: Christopher
full_name: Childers, Christopher
last_name: Childers
- first_name: Huyen
full_name: Dinh, Huyen
last_name: Dinh
- first_name: Harshavardhan
full_name: Doddapaneni, Harshavardhan
last_name: Doddapaneni
- first_name: Shannon
full_name: Dugan, Shannon
last_name: Dugan
- first_name: Johannes
full_name: Gowin, Johannes
last_name: Gowin
- first_name: Carolin
full_name: Greiner, Carolin
last_name: Greiner
- first_name: Yi
full_name: Han, Yi
last_name: Han
- first_name: Haofu
full_name: Hu, Haofu
last_name: Hu
- first_name: Daniel
full_name: Hughes, Daniel
last_name: Hughes
- first_name: Ann K
full_name: Huylmans, Ann K
id: 4C0A3874-F248-11E8-B48F-1D18A9856A87
last_name: Huylmans
orcid: 0000-0001-8871-4961
- first_name: Karsten
full_name: Kemena, Karsten
last_name: Kemena
- first_name: Lukas
full_name: Kremer, Lukas
last_name: Kremer
- first_name: Sandra
full_name: Lee, Sandra
last_name: Lee
- first_name: Alberto
full_name: López Ezquerra, Alberto
last_name: López Ezquerra
- first_name: Ludovic
full_name: Mallet, Ludovic
last_name: Mallet
- first_name: Jose
full_name: Monroy Kuhn, Jose
last_name: Monroy Kuhn
- first_name: Annabell
full_name: Moser, Annabell
last_name: Moser
- first_name: Shwetha
full_name: Murali, Shwetha
last_name: Murali
- first_name: Donna
full_name: Muzny, Donna
last_name: Muzny
- first_name: Saria
full_name: Otani, Saria
last_name: Otani
- first_name: Maria
full_name: Piulachs, Maria
last_name: Piulachs
- first_name: Monica
full_name: Poelchau, Monica
last_name: Poelchau
- first_name: Jiaxin
full_name: Qu, Jiaxin
last_name: Qu
- first_name: Florentine
full_name: Schaub, Florentine
last_name: Schaub
- first_name: Ayako
full_name: Wada Katsumata, Ayako
last_name: Wada Katsumata
- first_name: Kim
full_name: Worley, Kim
last_name: Worley
- first_name: Qiaolin
full_name: Xie, Qiaolin
last_name: Xie
- first_name: Guillem
full_name: Ylla, Guillem
last_name: Ylla
- first_name: Michael
full_name: Poulsen, Michael
last_name: Poulsen
- first_name: Richard
full_name: Gibbs, Richard
last_name: Gibbs
- first_name: Coby
full_name: Schal, Coby
last_name: Schal
- first_name: Stephen
full_name: Richards, Stephen
last_name: Richards
- first_name: Xavier
full_name: Belles, Xavier
last_name: Belles
- first_name: Judith
full_name: Korb, Judith
last_name: Korb
- first_name: Erich
full_name: Bornberg Bauer, Erich
last_name: Bornberg Bauer
citation:
ama: Harrison M, Jongepier E, Robertson H, et al. Hemimetabolous genomes reveal
molecular basis of termite eusociality. Nature Ecology and Evolution. 2018;2(3):557-566.
doi:10.1038/s41559-017-0459-1
apa: Harrison, M., Jongepier, E., Robertson, H., Arning, N., Bitard Feildel, T.,
Chao, H., … Bornberg Bauer, E. (2018). Hemimetabolous genomes reveal molecular
basis of termite eusociality. Nature Ecology and Evolution. Springer Nature.
https://doi.org/10.1038/s41559-017-0459-1
chicago: Harrison, Mark, Evelien Jongepier, Hugh Robertson, Nicolas Arning, Tristan
Bitard Feildel, Hsu Chao, Christopher Childers, et al. “Hemimetabolous Genomes
Reveal Molecular Basis of Termite Eusociality.” Nature Ecology and Evolution.
Springer Nature, 2018. https://doi.org/10.1038/s41559-017-0459-1.
ieee: M. Harrison et al., “Hemimetabolous genomes reveal molecular basis
of termite eusociality,” Nature Ecology and Evolution, vol. 2, no. 3. Springer
Nature, pp. 557–566, 2018.
ista: Harrison M, Jongepier E, Robertson H, Arning N, Bitard Feildel T, Chao H,
Childers C, Dinh H, Doddapaneni H, Dugan S, Gowin J, Greiner C, Han Y, Hu H, Hughes
D, Huylmans AK, Kemena K, Kremer L, Lee S, López Ezquerra A, Mallet L, Monroy
Kuhn J, Moser A, Murali S, Muzny D, Otani S, Piulachs M, Poelchau M, Qu J, Schaub
F, Wada Katsumata A, Worley K, Xie Q, Ylla G, Poulsen M, Gibbs R, Schal C, Richards
S, Belles X, Korb J, Bornberg Bauer E. 2018. Hemimetabolous genomes reveal molecular
basis of termite eusociality. Nature Ecology and Evolution. 2(3), 557–566.
mla: Harrison, Mark, et al. “Hemimetabolous Genomes Reveal Molecular Basis of Termite
Eusociality.” Nature Ecology and Evolution, vol. 2, no. 3, Springer Nature,
2018, pp. 557–66, doi:10.1038/s41559-017-0459-1.
short: M. Harrison, E. Jongepier, H. Robertson, N. Arning, T. Bitard Feildel, H.
Chao, C. Childers, H. Dinh, H. Doddapaneni, S. Dugan, J. Gowin, C. Greiner, Y.
Han, H. Hu, D. Hughes, A.K. Huylmans, K. Kemena, L. Kremer, S. Lee, A. López Ezquerra,
L. Mallet, J. Monroy Kuhn, A. Moser, S. Murali, D. Muzny, S. Otani, M. Piulachs,
M. Poelchau, J. Qu, F. Schaub, A. Wada Katsumata, K. Worley, Q. Xie, G. Ylla,
M. Poulsen, R. Gibbs, C. Schal, S. Richards, X. Belles, J. Korb, E. Bornberg Bauer,
Nature Ecology and Evolution 2 (2018) 557–566.
date_created: 2018-12-11T11:46:32Z
date_published: 2018-02-05T00:00:00Z
date_updated: 2023-09-11T14:10:57Z
day: '05'
ddc:
- '576'
department:
- _id: BeVi
doi: 10.1038/s41559-017-0459-1
external_id:
isi:
- '000426559600026'
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checksum: 874953136ac125e65f37971d3cabc5b7
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creator: system
date_created: 2018-12-12T10:09:08Z
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isi: 1
issue: '3'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '02'
oa: 1
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page: 557-566
publication: Nature Ecology and Evolution
publication_status: published
publisher: Springer Nature
publist_id: '7375'
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quality_controlled: '1'
related_material:
record:
- id: '9841'
relation: research_data
status: public
scopus_import: '1'
status: public
title: Hemimetabolous genomes reveal molecular basis of termite eusociality
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 2
year: '2018'
...
---
_id: '454'
abstract:
- lang: eng
text: Direct reciprocity is a mechanism for cooperation among humans. Many of our
daily interactions are repeated. We interact repeatedly with our family, friends,
colleagues, members of the local and even global community. In the theory of repeated
games, it is a tacit assumption that the various games that a person plays simultaneously
have no effect on each other. Here we introduce a general framework that allows
us to analyze “crosstalk” between a player’s concurrent games. In the presence
of crosstalk, the action a person experiences in one game can alter the person’s
decision in another. We find that crosstalk impedes the maintenance of cooperation
and requires stronger levels of forgiveness. The magnitude of the effect depends
on the population structure. In more densely connected social groups, crosstalk
has a stronger effect. A harsh retaliator, such as Tit-for-Tat, is unable to counteract
crosstalk. The crosstalk framework provides a unified interpretation of direct
and upstream reciprocity in the context of repeated games.
acknowledgement: "This work was supported by the European Research Council (ERC) start
grant 279307: Graph Games (C.K.), Austrian Science Fund (FWF) grant no P23499-N23
(C.K.), FWF\r\nNFN grant no S11407-N23 RiSE/SHiNE (C.K.), Office of Naval Research
grant N00014-16-1-2914 (M.A.N.), National Cancer Institute grant CA179991 (M.A.N.)
and by the John Templeton Foundation. J.G.R. is supported by an Erwin Schrödinger
fellowship\r\n(Austrian Science Fund FWF J-3996). C.H. acknowledges generous support
from the\r\nISTFELLOW program. The Program for Evolutionary Dynamics is supported
in part by\r\na gift from B Wu and Eric Larson."
article_number: '555'
article_processing_charge: No
author:
- first_name: Johannes
full_name: Reiter, Johannes
id: 4A918E98-F248-11E8-B48F-1D18A9856A87
last_name: Reiter
orcid: 0000-0002-0170-7353
- first_name: Christian
full_name: Hilbe, Christian
id: 2FDF8F3C-F248-11E8-B48F-1D18A9856A87
last_name: Hilbe
orcid: 0000-0001-5116-955X
- first_name: David
full_name: Rand, David
last_name: Rand
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Martin
full_name: Nowak, Martin
last_name: Nowak
citation:
ama: Reiter J, Hilbe C, Rand D, Chatterjee K, Nowak M. Crosstalk in concurrent repeated
games impedes direct reciprocity and requires stronger levels of forgiveness.
Nature Communications. 2018;9(1). doi:10.1038/s41467-017-02721-8
apa: Reiter, J., Hilbe, C., Rand, D., Chatterjee, K., & Nowak, M. (2018). Crosstalk
in concurrent repeated games impedes direct reciprocity and requires stronger
levels of forgiveness. Nature Communications. Nature Publishing Group.
https://doi.org/10.1038/s41467-017-02721-8
chicago: Reiter, Johannes, Christian Hilbe, David Rand, Krishnendu Chatterjee, and
Martin Nowak. “Crosstalk in Concurrent Repeated Games Impedes Direct Reciprocity
and Requires Stronger Levels of Forgiveness.” Nature Communications. Nature
Publishing Group, 2018. https://doi.org/10.1038/s41467-017-02721-8.
ieee: J. Reiter, C. Hilbe, D. Rand, K. Chatterjee, and M. Nowak, “Crosstalk in concurrent
repeated games impedes direct reciprocity and requires stronger levels of forgiveness,”
Nature Communications, vol. 9, no. 1. Nature Publishing Group, 2018.
ista: Reiter J, Hilbe C, Rand D, Chatterjee K, Nowak M. 2018. Crosstalk in concurrent
repeated games impedes direct reciprocity and requires stronger levels of forgiveness.
Nature Communications. 9(1), 555.
mla: Reiter, Johannes, et al. “Crosstalk in Concurrent Repeated Games Impedes Direct
Reciprocity and Requires Stronger Levels of Forgiveness.” Nature Communications,
vol. 9, no. 1, 555, Nature Publishing Group, 2018, doi:10.1038/s41467-017-02721-8.
short: J. Reiter, C. Hilbe, D. Rand, K. Chatterjee, M. Nowak, Nature Communications
9 (2018).
date_created: 2018-12-11T11:46:34Z
date_published: 2018-02-07T00:00:00Z
date_updated: 2025-04-15T06:30:05Z
day: '07'
ddc:
- '004'
department:
- _id: KrCh
doi: 10.1038/s41467-017-02721-8
ec_funded: 1
external_id:
isi:
- '000424318200001'
file:
- access_level: open_access
checksum: b6b90367545b4c615891c960ab0567f1
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:09:18Z
date_updated: 2020-07-14T12:46:31Z
file_id: '4741'
file_name: IST-2018-964-v1+1_2018_Hilbe_Crosstalk_in.pdf
file_size: 843646
relation: main_file
file_date_updated: 2020-07-14T12:46:31Z
fulldoi: https://doi.org/10.1038/s41467-017-02721-8
has_accepted_license: '1'
intvolume: ' 9'
isi: 1
issue: '1'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
project:
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2584A770-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P 23499-N23
name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S11407
name: Game Theory
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
publication: Nature Communications
publication_status: published
publisher: Nature Publishing Group
publist_id: '7368'
pubrep_id: '964'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Crosstalk in concurrent repeated games impedes direct reciprocity and requires
stronger levels of forgiveness
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 9
year: '2018'
...
---
_id: '455'
abstract:
- lang: eng
text: The derivation of effective evolution equations is central to the study of
non-stationary quantum many-body systems, and widely used in contexts such as
superconductivity, nuclear physics, Bose–Einstein condensation and quantum chemistry.
We reformulate the Dirac–Frenkel approximation principle in terms of reduced density
matrices and apply it to fermionic and bosonic many-body systems. We obtain the
Bogoliubov–de Gennes and Hartree–Fock–Bogoliubov equations, respectively. While
we do not prove quantitative error estimates, our formulation does show that the
approximation is optimal within the class of quasifree states. Furthermore, we
prove well-posedness of the Bogoliubov–de Gennes equations in energy space and
discuss conserved quantities
acknowledgement: Open access funding provided by Institute of Science and Technology
(IST Austria). The authors acknowledge support by ERC Advanced Grant 321029 and
by VILLUM FONDEN via the QMATH Centre of Excellence (Grant No. 10059). The authors
would like to thank Sébastien Breteaux, Enno Lenzmann, Mathieu Lewin and Jochen
Schmid for comments and discussions about well-posedness of the Bogoliubov–de Gennes
equations.
alternative_title:
- Annales Henri Poincare
article_processing_charge: No
author:
- first_name: Niels P
full_name: Benedikter, Niels P
id: 3DE6C32A-F248-11E8-B48F-1D18A9856A87
last_name: Benedikter
orcid: 0000-0002-1071-6091
- first_name: Jérémy
full_name: Sok, Jérémy
last_name: Sok
- first_name: Jan
full_name: Solovej, Jan
last_name: Solovej
citation:
ama: Benedikter NP, Sok J, Solovej J. The Dirac–Frenkel principle for reduced density
matrices and the Bogoliubov–de Gennes equations. Annales Henri Poincare.
2018;19(4):1167-1214. doi:10.1007/s00023-018-0644-z
apa: Benedikter, N. P., Sok, J., & Solovej, J. (2018). The Dirac–Frenkel principle
for reduced density matrices and the Bogoliubov–de Gennes equations. Annales
Henri Poincare. Birkhäuser. https://doi.org/10.1007/s00023-018-0644-z
chicago: Benedikter, Niels P, Jérémy Sok, and Jan Solovej. “The Dirac–Frenkel Principle
for Reduced Density Matrices and the Bogoliubov–de Gennes Equations.” Annales
Henri Poincare. Birkhäuser, 2018. https://doi.org/10.1007/s00023-018-0644-z.
ieee: N. P. Benedikter, J. Sok, and J. Solovej, “The Dirac–Frenkel principle for
reduced density matrices and the Bogoliubov–de Gennes equations,” Annales Henri
Poincare, vol. 19, no. 4. Birkhäuser, pp. 1167–1214, 2018.
ista: Benedikter NP, Sok J, Solovej J. 2018. The Dirac–Frenkel principle for reduced
density matrices and the Bogoliubov–de Gennes equations. Annales Henri Poincare.
19(4), 1167–1214.
mla: Benedikter, Niels P., et al. “The Dirac–Frenkel Principle for Reduced Density
Matrices and the Bogoliubov–de Gennes Equations.” Annales Henri Poincare,
vol. 19, no. 4, Birkhäuser, 2018, pp. 1167–214, doi:10.1007/s00023-018-0644-z.
short: N.P. Benedikter, J. Sok, J. Solovej, Annales Henri Poincare 19 (2018) 1167–1214.
corr_author: '1'
date_created: 2018-12-11T11:46:34Z
date_published: 2018-04-01T00:00:00Z
date_updated: 2024-10-09T20:58:43Z
day: '01'
ddc:
- '510'
- '539'
department:
- _id: RoSe
doi: 10.1007/s00023-018-0644-z
external_id:
isi:
- '000427578900006'
file:
- access_level: open_access
checksum: 883eeccba8384ad7fcaa28761d99a0fa
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:11:57Z
date_updated: 2020-07-14T12:46:31Z
file_id: '4914'
file_name: IST-2018-993-v1+1_2018_Benedikter_Dirac.pdf
file_size: 923252
relation: main_file
file_date_updated: 2020-07-14T12:46:31Z
fulldoi: https://doi.org/10.1007/s00023-018-0644-z
has_accepted_license: '1'
intvolume: ' 19'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 1167 - 1214
publication: Annales Henri Poincare
publication_status: published
publisher: Birkhäuser
publist_id: '7367'
pubrep_id: '993'
quality_controlled: '1'
scopus_import: '1'
status: public
title: The Dirac–Frenkel principle for reduced density matrices and the Bogoliubov–de
Gennes equations
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 19
year: '2018'
...
---
_id: '456'
abstract:
- lang: eng
text: 'Inhibition of the endoplasmic reticulum stress pathway may hold the key to
Zika virus-associated microcephaly treatment. '
article_number: eaar7514
author:
- first_name: Gaia
full_name: Novarino, Gaia
id: 3E57A680-F248-11E8-B48F-1D18A9856A87
last_name: Novarino
orcid: 0000-0002-7673-7178
citation:
ama: 'Novarino G. Zika-associated microcephaly: Reduce the stress and race for the
treatment. Science Translational Medicine. 2018;10(423). doi:10.1126/scitranslmed.aar7514'
apa: 'Novarino, G. (2018). Zika-associated microcephaly: Reduce the stress and race
for the treatment. Science Translational Medicine. American Association
for the Advancement of Science. https://doi.org/10.1126/scitranslmed.aar7514'
chicago: 'Novarino, Gaia. “Zika-Associated Microcephaly: Reduce the Stress and Race
for the Treatment.” Science Translational Medicine. American Association
for the Advancement of Science, 2018. https://doi.org/10.1126/scitranslmed.aar7514.'
ieee: 'G. Novarino, “Zika-associated microcephaly: Reduce the stress and race for
the treatment,” Science Translational Medicine, vol. 10, no. 423. American
Association for the Advancement of Science, 2018.'
ista: 'Novarino G. 2018. Zika-associated microcephaly: Reduce the stress and race
for the treatment. Science Translational Medicine. 10(423), eaar7514.'
mla: 'Novarino, Gaia. “Zika-Associated Microcephaly: Reduce the Stress and Race
for the Treatment.” Science Translational Medicine, vol. 10, no. 423, eaar7514,
American Association for the Advancement of Science, 2018, doi:10.1126/scitranslmed.aar7514.'
short: G. Novarino, Science Translational Medicine 10 (2018).
corr_author: '1'
date_created: 2018-12-11T11:46:34Z
date_published: 2018-01-10T00:00:00Z
date_updated: 2024-10-09T20:58:46Z
day: '10'
department:
- _id: GaNo
doi: 10.1126/scitranslmed.aar7514
fulldoi: https://doi.org/10.1126/scitranslmed.aar7514
intvolume: ' 10'
issue: '423'
language:
- iso: eng
month: '01'
oa_version: None
publication: Science Translational Medicine
publication_status: published
publisher: American Association for the Advancement of Science
publist_id: '7365'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Zika-associated microcephaly: Reduce the stress and race for the treatment'
type: journal_article
user_id: 4435EBFC-F248-11E8-B48F-1D18A9856A87
volume: 10
year: '2018'
...
---
_id: '457'
abstract:
- lang: eng
text: Temperate bacteriophages integrate in bacterial genomes as prophages and represent
an important source of genetic variation for bacterial evolution, frequently transmitting
fitness-augmenting genes such as toxins responsible for virulence of major pathogens.
However, only a fraction of bacteriophage infections are lysogenic and lead to
prophage acquisition, whereas the majority are lytic and kill the infected bacteria.
Unless able to discriminate lytic from lysogenic infections, mechanisms of immunity
to bacteriophages are expected to act as a double-edged sword and increase the
odds of survival at the cost of depriving bacteria of potentially beneficial prophages.
We show that although restriction-modification systems as mechanisms of innate
immunity prevent both lytic and lysogenic infections indiscriminately in individual
bacteria, they increase the number of prophage-acquiring individuals at the population
level. We find that this counterintuitive result is a consequence of phage-host
population dynamics, in which restriction-modification systems delay infection
onset until bacteria reach densities at which the probability of lysogeny increases.
These results underscore the importance of population-level dynamics as a key
factor modulating costs and benefits of immunity to temperate bacteriophages
article_processing_charge: No
author:
- first_name: Maros
full_name: Pleska, Maros
id: 4569785E-F248-11E8-B48F-1D18A9856A87
last_name: Pleska
orcid: 0000-0001-7460-7479
- first_name: Moritz
full_name: Lang, Moritz
id: 29E0800A-F248-11E8-B48F-1D18A9856A87
last_name: Lang
- first_name: Dominik
full_name: Refardt, Dominik
last_name: Refardt
- first_name: Bruce
full_name: Levin, Bruce
last_name: Levin
- first_name: Calin C
full_name: Guet, Calin C
id: 47F8433E-F248-11E8-B48F-1D18A9856A87
last_name: Guet
orcid: 0000-0001-6220-2052
citation:
ama: Pleska M, Lang M, Refardt D, Levin B, Guet CC. Phage-host population dynamics
promotes prophage acquisition in bacteria with innate immunity. Nature Ecology
and Evolution. 2018;2(2):359-366. doi:10.1038/s41559-017-0424-z
apa: Pleska, M., Lang, M., Refardt, D., Levin, B., & Guet, C. C. (2018). Phage-host
population dynamics promotes prophage acquisition in bacteria with innate immunity.
Nature Ecology and Evolution. Springer Nature. https://doi.org/10.1038/s41559-017-0424-z
chicago: Pleska, Maros, Moritz Lang, Dominik Refardt, Bruce Levin, and Calin C Guet.
“Phage-Host Population Dynamics Promotes Prophage Acquisition in Bacteria with
Innate Immunity.” Nature Ecology and Evolution. Springer Nature, 2018.
https://doi.org/10.1038/s41559-017-0424-z.
ieee: M. Pleska, M. Lang, D. Refardt, B. Levin, and C. C. Guet, “Phage-host population
dynamics promotes prophage acquisition in bacteria with innate immunity,” Nature
Ecology and Evolution, vol. 2, no. 2. Springer Nature, pp. 359–366, 2018.
ista: Pleska M, Lang M, Refardt D, Levin B, Guet CC. 2018. Phage-host population
dynamics promotes prophage acquisition in bacteria with innate immunity. Nature
Ecology and Evolution. 2(2), 359–366.
mla: Pleska, Maros, et al. “Phage-Host Population Dynamics Promotes Prophage Acquisition
in Bacteria with Innate Immunity.” Nature Ecology and Evolution, vol. 2,
no. 2, Springer Nature, 2018, pp. 359–66, doi:10.1038/s41559-017-0424-z.
short: M. Pleska, M. Lang, D. Refardt, B. Levin, C.C. Guet, Nature Ecology and Evolution
2 (2018) 359–366.
corr_author: '1'
date_created: 2018-12-11T11:46:35Z
date_published: 2018-02-01T00:00:00Z
date_updated: 2026-04-08T14:19:43Z
day: '01'
department:
- _id: CaGu
- _id: GaTk
doi: 10.1038/s41559-017-0424-z
ec_funded: 1
external_id:
isi:
- '000426516400027'
fulldoi: https://doi.org/10.1038/s41559-017-0424-z
intvolume: ' 2'
isi: 1
issue: '2'
language:
- iso: eng
month: '02'
oa_version: None
page: 359 - 366
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
- _id: 251BCBEC-B435-11E9-9278-68D0E5697425
grant_number: RGY0079/2011
name: Multi-Level Conflicts in Evolutionary Dynamics of Restriction-Modification
Systems
- _id: 251D65D8-B435-11E9-9278-68D0E5697425
grant_number: '24210'
name: Effects of Stochasticity on the Function of Restriction-Modi cation Systems
at the Single-Cell Level
publication: Nature Ecology and Evolution
publication_status: published
publisher: Springer Nature
publist_id: '7364'
quality_controlled: '1'
related_material:
record:
- id: '202'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: Phage-host population dynamics promotes prophage acquisition in bacteria with
innate immunity
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 2
year: '2018'
...
---
_id: '458'
abstract:
- lang: eng
text: We consider congruences of straight lines in a plane with the combinatorics
of the square grid, with all elementary quadrilaterals possessing an incircle.
It is shown that all the vertices of such nets (we call them incircular or IC-nets)
lie on confocal conics. Our main new results are on checkerboard IC-nets in the
plane. These are congruences of straight lines in the plane with the combinatorics
of the square grid, combinatorially colored as a checkerboard, such that all black
coordinate quadrilaterals possess inscribed circles. We show how this larger class
of IC-nets appears quite naturally in Laguerre geometry of oriented planes and
spheres and leads to new remarkable incidence theorems. Most of our results are
valid in hyperbolic and spherical geometries as well. We present also generalizations
in spaces of higher dimension, called checkerboard IS-nets. The construction of
these nets is based on a new 9 inspheres incidence theorem.
acknowledgement: DFG Collaborative Research Center TRR 109 “Discretization in Geometry
and Dynamics”; People Programme (Marie Curie Actions) of the European Union’s Seventh
Framework Programme (FP7/2007-2013) REA grant agreement n◦[291734]
article_processing_charge: No
arxiv: 1
author:
- first_name: Arseniy
full_name: Akopyan, Arseniy
id: 430D2C90-F248-11E8-B48F-1D18A9856A87
last_name: Akopyan
orcid: 0000-0002-2548-617X
- first_name: Alexander
full_name: Bobenko, Alexander
last_name: Bobenko
citation:
ama: Akopyan A, Bobenko A. Incircular nets and confocal conics. Transactions
of the American Mathematical Society. 2018;370(4):2825-2854. doi:10.1090/tran/7292
apa: Akopyan, A., & Bobenko, A. (2018). Incircular nets and confocal conics.
Transactions of the American Mathematical Society. American Mathematical
Society. https://doi.org/10.1090/tran/7292
chicago: Akopyan, Arseniy, and Alexander Bobenko. “Incircular Nets and Confocal
Conics.” Transactions of the American Mathematical Society. American Mathematical
Society, 2018. https://doi.org/10.1090/tran/7292.
ieee: A. Akopyan and A. Bobenko, “Incircular nets and confocal conics,” Transactions
of the American Mathematical Society, vol. 370, no. 4. American Mathematical
Society, pp. 2825–2854, 2018.
ista: Akopyan A, Bobenko A. 2018. Incircular nets and confocal conics. Transactions
of the American Mathematical Society. 370(4), 2825–2854.
mla: Akopyan, Arseniy, and Alexander Bobenko. “Incircular Nets and Confocal Conics.”
Transactions of the American Mathematical Society, vol. 370, no. 4, American
Mathematical Society, 2018, pp. 2825–54, doi:10.1090/tran/7292.
short: A. Akopyan, A. Bobenko, Transactions of the American Mathematical Society
370 (2018) 2825–2854.
corr_author: '1'
date_created: 2018-12-11T11:46:35Z
date_published: 2018-04-01T00:00:00Z
date_updated: 2025-06-04T08:06:10Z
day: '01'
department:
- _id: HeEd
doi: 10.1090/tran/7292
ec_funded: 1
external_id:
arxiv:
- '1602.04637'
isi:
- '000423197800019'
fulldoi: https://doi.org/10.1090/tran/7292
intvolume: ' 370'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1602.04637
month: '04'
oa: 1
oa_version: Preprint
page: 2825 - 2854
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
publication: Transactions of the American Mathematical Society
publication_status: published
publisher: American Mathematical Society
publist_id: '7363'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Incircular nets and confocal conics
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 370
year: '2018'
...
---
_id: '46'
abstract:
- lang: eng
text: We analyze a disordered central spin model, where a central spin interacts
equally with each spin in a periodic one-dimensional (1D) random-field Heisenberg
chain. If the Heisenberg chain is initially in the many-body localized (MBL) phase,
we find that the coupling to the central spin suffices to delocalize the chain
for a substantial range of coupling strengths. We calculate the phase diagram
of the model and identify the phase boundary between the MBL and ergodic phase.
Within the localized phase, the central spin significantly enhances the rate of
the logarithmic entanglement growth and its saturation value. We attribute the
increase in entanglement entropy to a nonextensive enhancement of magnetization
fluctuations induced by the central spin. Finally, we demonstrate that correlation
functions of the central spin can be utilized to distinguish between MBL and ergodic
phases of the 1D chain. Hence, we propose the use of a central spin as a possible
experimental probe to identify the MBL phase.
acknowledgement: F.P. acknowledges the sup- port of the DFG Research Unit FOR 1807
through Grants No. PO 1370/2-1 and No. TRR80, the Nanosystems Initiative Munich
(NIM) by the German Excellence Initiative, and the European Research Council (ERC)
under the European Union’s Horizon 2020 research and innovation programme (Grant
Agreement No. 771537). N.Y.Y. acknowledges support from the NSF (PHY-1654740), the
ARO STIR program, and a Google research award.
article_number: '161122'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Daniel
full_name: Hetterich, Daniel
last_name: Hetterich
- first_name: Norman
full_name: Yao, Norman
last_name: Yao
- first_name: Maksym
full_name: Serbyn, Maksym
id: 47809E7E-F248-11E8-B48F-1D18A9856A87
last_name: Serbyn
orcid: 0000-0002-2399-5827
- first_name: Frank
full_name: Pollmann, Frank
last_name: Pollmann
- first_name: Björn
full_name: Trauzettel, Björn
last_name: Trauzettel
citation:
ama: Hetterich D, Yao N, Serbyn M, Pollmann F, Trauzettel B. Detection and characterization
of many-body localization in central spin models. Physical Review B. 2018;98(16).
doi:10.1103/PhysRevB.98.161122
apa: Hetterich, D., Yao, N., Serbyn, M., Pollmann, F., & Trauzettel, B. (2018).
Detection and characterization of many-body localization in central spin models.
Physical Review B. American Physical Society. https://doi.org/10.1103/PhysRevB.98.161122
chicago: Hetterich, Daniel, Norman Yao, Maksym Serbyn, Frank Pollmann, and Björn
Trauzettel. “Detection and Characterization of Many-Body Localization in Central
Spin Models.” Physical Review B. American Physical Society, 2018. https://doi.org/10.1103/PhysRevB.98.161122.
ieee: D. Hetterich, N. Yao, M. Serbyn, F. Pollmann, and B. Trauzettel, “Detection
and characterization of many-body localization in central spin models,” Physical
Review B, vol. 98, no. 16. American Physical Society, 2018.
ista: Hetterich D, Yao N, Serbyn M, Pollmann F, Trauzettel B. 2018. Detection and
characterization of many-body localization in central spin models. Physical Review
B. 98(16), 161122.
mla: Hetterich, Daniel, et al. “Detection and Characterization of Many-Body Localization
in Central Spin Models.” Physical Review B, vol. 98, no. 16, 161122, American
Physical Society, 2018, doi:10.1103/PhysRevB.98.161122.
short: D. Hetterich, N. Yao, M. Serbyn, F. Pollmann, B. Trauzettel, Physical Review
B 98 (2018).
date_created: 2018-12-11T11:44:20Z
date_published: 2018-10-15T00:00:00Z
date_updated: 2023-09-11T12:55:03Z
day: '15'
department:
- _id: MaSe
doi: 10.1103/PhysRevB.98.161122
external_id:
arxiv:
- '1806.08316'
isi:
- '000448596500002'
fulldoi: https://doi.org/10.1103/PhysRevB.98.161122
intvolume: ' 98'
isi: 1
issue: '16'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1806.08316
month: '10'
oa: 1
oa_version: Preprint
publication: Physical Review B
publication_status: published
publisher: American Physical Society
publist_id: '8008'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Detection and characterization of many-body localization in central spin models
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 98
year: '2018'
...
---
_id: '462'
abstract:
- lang: eng
text: 'AtNHX5 and AtNHX6 are endosomal Na+,K+/H+ antiporters that are critical for
growth and development in Arabidopsis, but the mechanism behind their action remains
unknown. Here, we report that AtNHX5 and AtNHX6, functioning as H+ leak, control
auxin homeostasis and auxin-mediated development. We found that nhx5 nhx6 exhibited
growth variations of auxin-related defects. We further showed that nhx5 nhx6 was
affected in auxin homeostasis. Genetic analysis showed that AtNHX5 and AtNHX6
were required for the function of the ER-localized auxin transporter PIN5. Although
AtNHX5 and AtNHX6 were co-localized with PIN5 at ER, they did not interact directly.
Instead, the conserved acidic residues in AtNHX5 and AtNHX6, which are essential
for exchange activity, were required for PIN5 function. AtNHX5 and AtNHX6 regulated
the pH in ER. Overall, AtNHX5 and AtNHX6 may regulate auxin transport across the
ER via the pH gradient created by their transport activity. H+-leak pathway provides
a fine-tuning mechanism that controls cellular auxin fluxes. '
acknowledgement: 'This work was supported by the National Natural Science Foundation
of China (31571464, 31371438 and 31070222 to Q.S.Q.), the National Basic Research
Program of China (973 project, 2013CB429904 to Q.S.Q.), the Research Fund for the
Doctoral Program of Higher Education of China (20130211110001 to Q.S.Q.), the Ministry
of Education, Youth and Sports of the Czech Republic (the National Program for Sustainability
I, LO1204), and The Czech Science Foundation GAČR (GA13–40637S) to JF. We thank
Dr. Tom J. Guilfoyle for DR5::GUS line and Dr. Jia Li for pBIB‐RFP vector and DR5::GFP
line. We thank Liping Guan and Yang Zhao for their help with the confocal microscope
assay. '
article_processing_charge: No
article_type: original
author:
- first_name: Ligang
full_name: Fan, Ligang
last_name: Fan
- first_name: Lei
full_name: Zhao, Lei
last_name: Zhao
- first_name: Wei
full_name: Hu, Wei
last_name: Hu
- first_name: Weina
full_name: Li, Weina
last_name: Li
- first_name: Ondřej
full_name: Novák, Ondřej
last_name: Novák
- first_name: Miroslav
full_name: Strnad, Miroslav
last_name: Strnad
- first_name: Sibu
full_name: Simon, Sibu
id: 4542EF9A-F248-11E8-B48F-1D18A9856A87
last_name: Simon
orcid: 0000-0002-1998-6741
- first_name: Jirí
full_name: Friml, Jirí
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Jinbo
full_name: Shen, Jinbo
last_name: Shen
- first_name: Liwen
full_name: Jiang, Liwen
last_name: Jiang
- first_name: Quan
full_name: Qiu, Quan
last_name: Qiu
citation:
ama: Fan L, Zhao L, Hu W, et al. NHX antiporters regulate the pH of endoplasmic
reticulum and auxin-mediated development. Plant, Cell and Environment.
2018;41:850-864. doi:10.1111/pce.13153
apa: Fan, L., Zhao, L., Hu, W., Li, W., Novák, O., Strnad, M., … Qiu, Q. (2018).
NHX antiporters regulate the pH of endoplasmic reticulum and auxin-mediated development.
Plant, Cell and Environment. Wiley-Blackwell. https://doi.org/10.1111/pce.13153
chicago: Fan, Ligang, Lei Zhao, Wei Hu, Weina Li, Ondřej Novák, Miroslav Strnad,
Sibu Simon, et al. “NHX Antiporters Regulate the PH of Endoplasmic Reticulum and
Auxin-Mediated Development.” Plant, Cell and Environment. Wiley-Blackwell,
2018. https://doi.org/10.1111/pce.13153.
ieee: L. Fan et al., “NHX antiporters regulate the pH of endoplasmic reticulum
and auxin-mediated development,” Plant, Cell and Environment, vol. 41.
Wiley-Blackwell, pp. 850–864, 2018.
ista: Fan L, Zhao L, Hu W, Li W, Novák O, Strnad M, Simon S, Friml J, Shen J, Jiang
L, Qiu Q. 2018. NHX antiporters regulate the pH of endoplasmic reticulum and auxin-mediated
development. Plant, Cell and Environment. 41, 850–864.
mla: Fan, Ligang, et al. “NHX Antiporters Regulate the PH of Endoplasmic Reticulum
and Auxin-Mediated Development.” Plant, Cell and Environment, vol. 41,
Wiley-Blackwell, 2018, pp. 850–64, doi:10.1111/pce.13153.
short: L. Fan, L. Zhao, W. Hu, W. Li, O. Novák, M. Strnad, S. Simon, J. Friml, J.
Shen, L. Jiang, Q. Qiu, Plant, Cell and Environment 41 (2018) 850–864.
date_created: 2018-12-11T11:46:36Z
date_published: 2018-05-01T00:00:00Z
date_updated: 2023-09-13T09:03:18Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1111/pce.13153
external_id:
isi:
- '000426870500012'
pmid:
- '29360148'
file:
- access_level: open_access
checksum: 6a20f843565f962cb20281cdf5e40914
content_type: application/pdf
creator: dernst
date_created: 2019-11-18T16:22:22Z
date_updated: 2020-07-14T12:46:32Z
file_id: '7042'
file_name: 2018_PlantCellEnv_Fan.pdf
file_size: 1937976
relation: main_file
file_date_updated: 2020-07-14T12:46:32Z
fulldoi: https://doi.org/10.1111/pce.13153
has_accepted_license: '1'
intvolume: ' 41'
isi: 1
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '05'
oa: 1
oa_version: Submitted Version
page: 850 - 864
pmid: 1
publication: Plant, Cell and Environment
publication_status: published
publisher: Wiley-Blackwell
publist_id: '7359'
quality_controlled: '1'
scopus_import: '1'
status: public
title: NHX antiporters regulate the pH of endoplasmic reticulum and auxin-mediated
development
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
short: CC BY-NC (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 41
year: '2018'
...
---
_id: '503'
abstract:
- lang: eng
text: Buffers are essential for diluting bacterial cultures for flow cytometry analysis
in order to study bacterial physiology and gene expression parameters based on
fluorescence signals. Using a variety of constitutively expressed fluorescent
proteins in Escherichia coli K-12 strain MG1655, we found strong artifactual changes
in fluorescence levels after dilution into the commonly used flow cytometry buffer
phosphate-buffered saline (PBS) and two other buffer solutions, Tris-HCl and M9
salts. These changes appeared very rapidly after dilution, and were linked to
increased membrane permeability and loss in cell viability. We observed buffer-related
effects in several different E. coli strains, K-12, C and W, but not E. coli B,
which can be partially explained by differences in lipopolysaccharide (LPS) and
outer membrane composition. Supplementing the buffers with divalent cations responsible
for outer membrane stability, Mg2+ and Ca2+, preserved fluorescence signals, membrane
integrity and viability of E. coli. Thus, stabilizing the bacterial outer membrane
is essential for precise and unbiased measurements of fluorescence parameters
using flow cytometry.
acknowledged_ssus:
- _id: Bio
acknowledgement: "We thank R Chait and M Lagator for sharing Bacillus subtilis CR_Y1
and pZS*_2R-cIPtet-Venus-Prm, respectively. We are grateful to T Pilizota and all
members of the Guet lab for critically reading the manuscript. We also thank the
Bioimaging facility at IST Austria for assistance using the FACSAria III system.\r\n\r\n"
article_processing_charge: No
author:
- first_name: Kathrin
full_name: Tomasek, Kathrin
id: 3AEC8556-F248-11E8-B48F-1D18A9856A87
last_name: Tomasek
orcid: 0000-0003-3768-877X
- first_name: Tobias
full_name: Bergmiller, Tobias
id: 2C471CFA-F248-11E8-B48F-1D18A9856A87
last_name: Bergmiller
orcid: 0000-0001-5396-4346
- first_name: Calin C
full_name: Guet, Calin C
id: 47F8433E-F248-11E8-B48F-1D18A9856A87
last_name: Guet
orcid: 0000-0001-6220-2052
citation:
ama: Tomasek K, Bergmiller T, Guet CC. Lack of cations in flow cytometry buffers
affect fluorescence signals by reducing membrane stability and viability of Escherichia
coli strains. Journal of Biotechnology. 2018;268:40-52. doi:10.1016/j.jbiotec.2018.01.008
apa: Tomasek, K., Bergmiller, T., & Guet, C. C. (2018). Lack of cations in flow
cytometry buffers affect fluorescence signals by reducing membrane stability and
viability of Escherichia coli strains. Journal of Biotechnology. Elsevier.
https://doi.org/10.1016/j.jbiotec.2018.01.008
chicago: Tomasek, Kathrin, Tobias Bergmiller, and Calin C Guet. “Lack of Cations
in Flow Cytometry Buffers Affect Fluorescence Signals by Reducing Membrane Stability
and Viability of Escherichia Coli Strains.” Journal of Biotechnology. Elsevier,
2018. https://doi.org/10.1016/j.jbiotec.2018.01.008.
ieee: K. Tomasek, T. Bergmiller, and C. C. Guet, “Lack of cations in flow cytometry
buffers affect fluorescence signals by reducing membrane stability and viability
of Escherichia coli strains,” Journal of Biotechnology, vol. 268. Elsevier,
pp. 40–52, 2018.
ista: Tomasek K, Bergmiller T, Guet CC. 2018. Lack of cations in flow cytometry
buffers affect fluorescence signals by reducing membrane stability and viability
of Escherichia coli strains. Journal of Biotechnology. 268, 40–52.
mla: Tomasek, Kathrin, et al. “Lack of Cations in Flow Cytometry Buffers Affect
Fluorescence Signals by Reducing Membrane Stability and Viability of Escherichia
Coli Strains.” Journal of Biotechnology, vol. 268, Elsevier, 2018, pp.
40–52, doi:10.1016/j.jbiotec.2018.01.008.
short: K. Tomasek, T. Bergmiller, C.C. Guet, Journal of Biotechnology 268 (2018)
40–52.
corr_author: '1'
date_created: 2018-12-11T11:46:50Z
date_published: 2018-02-20T00:00:00Z
date_updated: 2024-10-09T20:58:29Z
day: '20'
department:
- _id: CaGu
doi: 10.1016/j.jbiotec.2018.01.008
external_id:
isi:
- '000425715100006'
fulldoi: https://doi.org/10.1016/j.jbiotec.2018.01.008
intvolume: ' 268'
isi: 1
language:
- iso: eng
month: '02'
oa_version: None
page: 40 - 52
publication: Journal of Biotechnology
publication_status: published
publisher: Elsevier
publist_id: '7317'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Lack of cations in flow cytometry buffers affect fluorescence signals by reducing
membrane stability and viability of Escherichia coli strains
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 268
year: '2018'
...
---
_id: '519'
abstract:
- lang: eng
text: 'This study treats with the influence of a symmetry-breaking transversal magnetic
field on the nonlinear dynamics of ferrofluidic Taylor-Couette flow – flow confined
between two concentric independently rotating cylinders. We detected alternating
‘flip’ solutions which are flow states featuring typical characteristics of slow-fast-dynamics
in dynamical systems. The flip corresponds to a temporal change in the axial wavenumber
and we find them to appear either as pure 2-fold axisymmetric (due to the symmetry-breaking
nature of the applied transversal magnetic field) or involving non-axisymmetric,
helical modes in its interim solution. The latter ones show features of typical
ribbon solutions. In any case the flip solutions have a preferential first axial
wavenumber which corresponds to the more stable state (slow dynamics) and second
axial wavenumber, corresponding to the short appearing more unstable state (fast
dynamics). However, in both cases the flip time grows exponential with increasing
the magnetic field strength before the flip solutions, living on 2-tori invariant
manifolds, cease to exist, with lifetime going to infinity. Further we show that
ferrofluidic flow turbulence differ from the classical, ordinary (usually at high
Reynolds number) turbulence. The applied magnetic field hinders the free motion
of ferrofluid partials and therefore smoothen typical turbulent quantities and
features so that speaking of mildly chaotic dynamics seems to be a more appropriate
expression for the observed motion. '
acknowledgement: S.Altmeyer is a Serra Húnter Fellow
article_processing_charge: No
article_type: original
author:
- first_name: Sebastian
full_name: Altmeyer, Sebastian
id: 2EE67FDC-F248-11E8-B48F-1D18A9856A87
last_name: Altmeyer
orcid: 0000-0001-5964-0203
citation:
ama: Altmeyer S. Non-linear dynamics and alternating ‘flip’ solutions in ferrofluidic
Taylor-Couette flow. Journal of Magnetism and Magnetic Materials. 2018;452:427-441.
doi:10.1016/j.jmmm.2017.12.073
apa: Altmeyer, S. (2018). Non-linear dynamics and alternating ‘flip’ solutions in
ferrofluidic Taylor-Couette flow. Journal of Magnetism and Magnetic Materials.
Elsevier. https://doi.org/10.1016/j.jmmm.2017.12.073
chicago: Altmeyer, Sebastian. “Non-Linear Dynamics and Alternating ‘Flip’ Solutions
in Ferrofluidic Taylor-Couette Flow.” Journal of Magnetism and Magnetic Materials.
Elsevier, 2018. https://doi.org/10.1016/j.jmmm.2017.12.073.
ieee: S. Altmeyer, “Non-linear dynamics and alternating ‘flip’ solutions in ferrofluidic
Taylor-Couette flow,” Journal of Magnetism and Magnetic Materials, vol.
452. Elsevier, pp. 427–441, 2018.
ista: Altmeyer S. 2018. Non-linear dynamics and alternating ‘flip’ solutions in
ferrofluidic Taylor-Couette flow. Journal of Magnetism and Magnetic Materials.
452, 427–441.
mla: Altmeyer, Sebastian. “Non-Linear Dynamics and Alternating ‘Flip’ Solutions
in Ferrofluidic Taylor-Couette Flow.” Journal of Magnetism and Magnetic Materials,
vol. 452, Elsevier, 2018, pp. 427–41, doi:10.1016/j.jmmm.2017.12.073.
short: S. Altmeyer, Journal of Magnetism and Magnetic Materials 452 (2018) 427–441.
corr_author: '1'
date_created: 2018-12-11T11:46:56Z
date_published: 2018-04-15T00:00:00Z
date_updated: 2024-10-09T20:58:32Z
day: '15'
ddc:
- '530'
department:
- _id: BjHo
doi: 10.1016/j.jmmm.2017.12.073
external_id:
isi:
- '000425547700061'
file:
- access_level: open_access
checksum: 431f5cd4a628d7ca21161f82b14ccb4f
content_type: application/pdf
creator: dernst
date_created: 2020-05-14T14:41:17Z
date_updated: 2020-07-14T12:46:37Z
file_id: '7838'
file_name: 2018_Magnetism_Altmeyer.pdf
file_size: 17309535
relation: main_file
file_date_updated: 2020-07-14T12:46:37Z
fulldoi: https://doi.org/10.1016/j.jmmm.2017.12.073
has_accepted_license: '1'
intvolume: ' 452'
isi: 1
language:
- iso: eng
month: '04'
oa: 1
oa_version: Submitted Version
page: 427 - 441
publication: Journal of Magnetism and Magnetic Materials
publication_status: published
publisher: Elsevier
publist_id: '7297'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Non-linear dynamics and alternating ‘flip’ solutions in ferrofluidic Taylor-Couette
flow
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 452
year: '2018'
...
---
_id: '530'
abstract:
- lang: eng
text: Inclusion–exclusion is an effective method for computing the volume of a union
of measurable sets. We extend it to multiple coverings, proving short inclusion–exclusion
formulas for the subset of Rn covered by at least k balls in a finite set. We
implement two of the formulas in dimension n=3 and report on results obtained
with our software.
article_processing_charge: No
author:
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
- first_name: Mabel
full_name: Iglesias Ham, Mabel
id: 41B58C0C-F248-11E8-B48F-1D18A9856A87
last_name: Iglesias Ham
citation:
ama: 'Edelsbrunner H, Iglesias Ham M. Multiple covers with balls I: Inclusion–exclusion.
Computational Geometry: Theory and Applications. 2018;68:119-133. doi:10.1016/j.comgeo.2017.06.014'
apa: 'Edelsbrunner, H., & Iglesias Ham, M. (2018). Multiple covers with balls
I: Inclusion–exclusion. Computational Geometry: Theory and Applications.
Elsevier. https://doi.org/10.1016/j.comgeo.2017.06.014'
chicago: 'Edelsbrunner, Herbert, and Mabel Iglesias Ham. “Multiple Covers with Balls
I: Inclusion–Exclusion.” Computational Geometry: Theory and Applications.
Elsevier, 2018. https://doi.org/10.1016/j.comgeo.2017.06.014.'
ieee: 'H. Edelsbrunner and M. Iglesias Ham, “Multiple covers with balls I: Inclusion–exclusion,”
Computational Geometry: Theory and Applications, vol. 68. Elsevier, pp.
119–133, 2018.'
ista: 'Edelsbrunner H, Iglesias Ham M. 2018. Multiple covers with balls I: Inclusion–exclusion.
Computational Geometry: Theory and Applications. 68, 119–133.'
mla: 'Edelsbrunner, Herbert, and Mabel Iglesias Ham. “Multiple Covers with Balls
I: Inclusion–Exclusion.” Computational Geometry: Theory and Applications,
vol. 68, Elsevier, 2018, pp. 119–33, doi:10.1016/j.comgeo.2017.06.014.'
short: 'H. Edelsbrunner, M. Iglesias Ham, Computational Geometry: Theory and Applications
68 (2018) 119–133.'
corr_author: '1'
date_created: 2018-12-11T11:46:59Z
date_published: 2018-03-01T00:00:00Z
date_updated: 2025-04-15T08:37:54Z
day: '01'
ddc:
- '000'
department:
- _id: HeEd
doi: 10.1016/j.comgeo.2017.06.014
ec_funded: 1
external_id:
isi:
- '000415778300010'
file:
- access_level: open_access
checksum: 1c8d58cd489a66cd3e2064c1141c8c5e
content_type: application/pdf
creator: dernst
date_created: 2019-02-12T06:47:52Z
date_updated: 2020-07-14T12:46:38Z
file_id: '5953'
file_name: 2018_Edelsbrunner.pdf
file_size: 708357
relation: main_file
file_date_updated: 2020-07-14T12:46:38Z
fulldoi: https://doi.org/10.1016/j.comgeo.2017.06.014
has_accepted_license: '1'
intvolume: ' 68'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Preprint
page: 119 - 133
project:
- _id: 255D761E-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '318493'
name: Topological Complex Systems
publication: 'Computational Geometry: Theory and Applications'
publication_status: published
publisher: Elsevier
publist_id: '7289'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Multiple covers with balls I: Inclusion–exclusion'
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 68
year: '2018'
...
---
_id: '536'
abstract:
- lang: eng
text: 'We consider the problem of consensus in the challenging classic model. In
this model, the adversary is adaptive; it can choose which processors crash at
any point during the course of the algorithm. Further, communication is via asynchronous
message passing: there is no known upper bound on the time to send a message from
one processor to another, and all messages and coin flips are seen by the adversary.
We describe a new randomized consensus protocol with expected message complexity
O(n2log2n) when fewer than n / 2 processes may fail by crashing. This is an almost-linear
improvement over the best previously known protocol, and within logarithmic factors
of a known Ω(n2) message lower bound. The protocol further ensures that no process
sends more than O(nlog3n) messages in expectation, which is again within logarithmic
factors of optimal. We also present a generalization of the algorithm to an arbitrary
number of failures t, which uses expected O(nt+t2log2t) total messages. Our approach
is to build a message-efficient, resilient mechanism for aggregating individual
processor votes, implementing the message-passing equivalent of a weak shared
coin. Roughly, in our protocol, a processor first announces its votes to small
groups, then propagates them to increasingly larger groups as it generates more
and more votes. To bound the number of messages that an individual process might
have to send or receive, the protocol progressively increases the weight of generated
votes. The main technical challenge is bounding the impact of votes that are still
“in flight” (generated, but not fully propagated) on the final outcome of the
shared coin, especially since such votes might have different weights. We achieve
this by leveraging the structure of the algorithm, and a technical argument based
on martingale concentration bounds. Overall, we show that it is possible to build
an efficient message-passing implementation of a shared coin, and in the process
(almost-optimally) solve the classic consensus problem in the asynchronous message-passing
model.'
article_processing_charge: Yes (via OA deal)
author:
- first_name: Dan-Adrian
full_name: Alistarh, Dan-Adrian
id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
last_name: Alistarh
orcid: 0000-0003-3650-940X
- first_name: James
full_name: Aspnes, James
last_name: Aspnes
- first_name: Valerie
full_name: King, Valerie
last_name: King
- first_name: Jared
full_name: Saia, Jared
last_name: Saia
citation:
ama: Alistarh D-A, Aspnes J, King V, Saia J. Communication-efficient randomized
consensus. Distributed Computing. 2018;31(6):489-501. doi:10.1007/s00446-017-0315-1
apa: Alistarh, D.-A., Aspnes, J., King, V., & Saia, J. (2018). Communication-efficient
randomized consensus. Distributed Computing. Springer. https://doi.org/10.1007/s00446-017-0315-1
chicago: Alistarh, Dan-Adrian, James Aspnes, Valerie King, and Jared Saia. “Communication-Efficient
Randomized Consensus.” Distributed Computing. Springer, 2018. https://doi.org/10.1007/s00446-017-0315-1.
ieee: D.-A. Alistarh, J. Aspnes, V. King, and J. Saia, “Communication-efficient
randomized consensus,” Distributed Computing, vol. 31, no. 6. Springer,
pp. 489–501, 2018.
ista: Alistarh D-A, Aspnes J, King V, Saia J. 2018. Communication-efficient randomized
consensus. Distributed Computing. 31(6), 489–501.
mla: Alistarh, Dan-Adrian, et al. “Communication-Efficient Randomized Consensus.”
Distributed Computing, vol. 31, no. 6, Springer, 2018, pp. 489–501, doi:10.1007/s00446-017-0315-1.
short: D.-A. Alistarh, J. Aspnes, V. King, J. Saia, Distributed Computing 31 (2018)
489–501.
corr_author: '1'
date_created: 2018-12-11T11:47:01Z
date_published: 2018-11-01T00:00:00Z
date_updated: 2026-04-16T09:53:54Z
day: '01'
ddc:
- '000'
department:
- _id: DaAl
doi: 10.1007/s00446-017-0315-1
external_id:
isi:
- '000443832300005'
file:
- access_level: open_access
checksum: 69b46e537acdcac745237ddb853fcbb5
content_type: application/pdf
creator: dernst
date_created: 2019-01-22T07:25:51Z
date_updated: 2020-07-14T12:46:38Z
file_id: '5867'
file_name: 2017_DistribComp_Alistarh.pdf
file_size: 595707
relation: main_file
file_date_updated: 2020-07-14T12:46:38Z
fulldoi: https://doi.org/10.1007/s00446-017-0315-1
has_accepted_license: '1'
intvolume: ' 31'
isi: 1
issue: '6'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 489-501
project:
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
name: IST Austria Open Access Fund
publication: Distributed Computing
publication_identifier:
issn:
- 0178-2770
publication_status: published
publisher: Springer
publist_id: '7281'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Communication-efficient randomized consensus
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 31
year: '2018'
...
---
OA_type: free access
_id: '54'
abstract:
- lang: eng
text: During epithelial tissue development, repair, and homeostasis, adherens junctions
(AJs) ensure intercellular adhesion and tissue integrity while allowing for cell
and tissue dynamics. Mechanical forces play critical roles in AJs’ composition
and dynamics. Recent findings highlight that beyond a well-established role in
reinforcing cell-cell adhesion, AJ mechanosensitivity promotes junctional remodeling
and polarization, thereby regulating critical processes such as cell intercalation,
division, and collective migration. Here, we provide an integrated view of mechanosensing
mechanisms that regulate cell-cell contact composition, geometry, and integrity
under tension and highlight pivotal roles for mechanosensitive AJ remodeling in
preserving epithelial integrity and sustaining tissue dynamics.
acknowledgement: Research in the Bellaïche laboratory is supported by the European
Research Council (ERC Advanced, TiMoprh, 340784), the Fondation ARC pour la Recherche
sur le Cancer (SL220130607097), the Agence Nationale de la Recherche (ANR lLabex
DEEP; 11-LBX-0044, ANR-10-IDEX-0001-02), the Centre National de la Recherche Scientifique,
the Institut National de la Santé et de la Recherche Médicale, and Institut Curie
and PSL Research University funding or grants.
article_processing_charge: No
article_type: review
author:
- first_name: Diana C
full_name: Nunes Pinheiro, Diana C
id: 2E839F16-F248-11E8-B48F-1D18A9856A87
last_name: Nunes Pinheiro
orcid: 0000-0003-4333-7503
- first_name: Yohanns
full_name: Bellaïche, Yohanns
last_name: Bellaïche
citation:
ama: Nunes Pinheiro DC, Bellaïche Y. Mechanical force-driven adherents junction
remodeling and epithelial dynamics. Developmental Cell. 2018;47(1):3-19.
doi:10.1016/j.devcel.2018.09.014
apa: Nunes Pinheiro, D. C., & Bellaïche, Y. (2018). Mechanical force-driven
adherents junction remodeling and epithelial dynamics. Developmental Cell.
Cell Press. https://doi.org/10.1016/j.devcel.2018.09.014
chicago: Nunes Pinheiro, Diana C, and Yohanns Bellaïche. “Mechanical Force-Driven
Adherents Junction Remodeling and Epithelial Dynamics.” Developmental Cell.
Cell Press, 2018. https://doi.org/10.1016/j.devcel.2018.09.014.
ieee: D. C. Nunes Pinheiro and Y. Bellaïche, “Mechanical force-driven adherents
junction remodeling and epithelial dynamics,” Developmental Cell, vol.
47, no. 1. Cell Press, pp. 3–19, 2018.
ista: Nunes Pinheiro DC, Bellaïche Y. 2018. Mechanical force-driven adherents junction
remodeling and epithelial dynamics. Developmental Cell. 47(1), 3–19.
mla: Nunes Pinheiro, Diana C., and Yohanns Bellaïche. “Mechanical Force-Driven Adherents
Junction Remodeling and Epithelial Dynamics.” Developmental Cell, vol.
47, no. 1, Cell Press, 2018, pp. 3–19, doi:10.1016/j.devcel.2018.09.014.
short: D.C. Nunes Pinheiro, Y. Bellaïche, Developmental Cell 47 (2018) 3–19.
date_created: 2018-12-11T11:44:23Z
date_published: 2018-10-08T00:00:00Z
date_updated: 2026-06-18T18:52:56Z
day: '08'
ddc:
- '570'
department:
- _id: CaHe
doi: 10.1016/j.devcel.2018.09.014
external_id:
isi:
- '000446579900002'
fulldoi: https://doi.org/10.1016/j.devcel.2018.09.014
intvolume: ' 47'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.devcel.2018.09.014
month: '10'
oa: 1
oa_version: Published Version
page: 3 - 19
publication: Developmental Cell
publication_status: published
publisher: Cell Press
publist_id: '8000'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mechanical force-driven adherents junction remodeling and epithelial dynamics
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 47
year: '2018'
...
---
_id: '543'
abstract:
- lang: eng
text: A central goal in theoretical neuroscience is to predict the response properties
of sensory neurons from first principles. To this end, “efficient coding” posits
that sensory neurons encode maximal information about their inputs given internal
constraints. There exist, however, many variants of efficient coding (e.g., redundancy
reduction, different formulations of predictive coding, robust coding, sparse
coding, etc.), differing in their regimes of applicability, in the relevance of
signals to be encoded, and in the choice of constraints. It is unclear how these
types of efficient coding relate or what is expected when different coding objectives
are combined. Here we present a unified framework that encompasses previously
proposed efficient coding models and extends to unique regimes. We show that optimizing
neural responses to encode predictive information can lead them to either correlate
or decorrelate their inputs, depending on the stimulus statistics; in contrast,
at low noise, efficiently encoding the past always predicts decorrelation. Later,
we investigate coding of naturalistic movies and show that qualitatively different
types of visual motion tuning and levels of response sparsity are predicted, depending
on whether the objective is to recover the past or predict the future. Our approach
promises a way to explain the observed diversity of sensory neural responses,
as due to multiple functional goals and constraints fulfilled by different cell
types and/or circuits.
article_processing_charge: No
author:
- first_name: Matthew J
full_name: Chalk, Matthew J
id: 2BAAC544-F248-11E8-B48F-1D18A9856A87
last_name: Chalk
orcid: 0000-0001-7782-4436
- first_name: Olivier
full_name: Marre, Olivier
last_name: Marre
- first_name: Gasper
full_name: Tkacik, Gasper
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkacik
orcid: 0000-0002-6699-1455
citation:
ama: Chalk MJ, Marre O, Tkačik G. Toward a unified theory of efficient, predictive,
and sparse coding. Proceedings of the National Academy of Sciences of the United
States of America. 2018;115(1):186-191. doi:10.1073/pnas.1711114115
apa: Chalk, M. J., Marre, O., & Tkačik, G. (2018). Toward a unified theory of
efficient, predictive, and sparse coding. Proceedings of the National Academy
of Sciences of the United States of America. National Academy of Sciences.
https://doi.org/10.1073/pnas.1711114115
chicago: Chalk, Matthew J, Olivier Marre, and Gašper Tkačik. “Toward a Unified Theory
of Efficient, Predictive, and Sparse Coding.” Proceedings of the National Academy
of Sciences of the United States of America. National Academy of Sciences,
2018. https://doi.org/10.1073/pnas.1711114115.
ieee: M. J. Chalk, O. Marre, and G. Tkačik, “Toward a unified theory of efficient,
predictive, and sparse coding,” Proceedings of the National Academy of Sciences
of the United States of America, vol. 115, no. 1. National Academy of Sciences,
pp. 186–191, 2018.
ista: Chalk MJ, Marre O, Tkačik G. 2018. Toward a unified theory of efficient, predictive,
and sparse coding. Proceedings of the National Academy of Sciences of the United
States of America. 115(1), 186–191.
mla: Chalk, Matthew J., et al. “Toward a Unified Theory of Efficient, Predictive,
and Sparse Coding.” Proceedings of the National Academy of Sciences of the
United States of America, vol. 115, no. 1, National Academy of Sciences, 2018,
pp. 186–91, doi:10.1073/pnas.1711114115.
short: M.J. Chalk, O. Marre, G. Tkačik, Proceedings of the National Academy of Sciences
of the United States of America 115 (2018) 186–191.
corr_author: '1'
date_created: 2018-12-11T11:47:04Z
date_published: 2018-01-02T00:00:00Z
date_updated: 2025-05-14T10:55:59Z
day: '02'
department:
- _id: GaTk
doi: 10.1073/pnas.1711114115
external_id:
isi:
- '000419128700049'
fulldoi: https://doi.org/10.1073/pnas.1711114115
intvolume: ' 115'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: 'https://doi.org/10.1101/152660 '
month: '01'
oa: 1
oa_version: Submitted Version
page: 186 - 191
project:
- _id: 254D1A94-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P 25651-N26
name: Sensitivity to higher-order statistics in natural scenes
publication: Proceedings of the National Academy of Sciences of the United States
of America
publication_status: published
publisher: National Academy of Sciences
publist_id: '7273'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Toward a unified theory of efficient, predictive, and sparse coding
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 115
year: '2018'
...
---
_id: '546'
abstract:
- lang: eng
text: The precise control of neural stem cell (NSC) proliferation and differentiation
is crucial for the development and function of the human brain. Here, we review
the emerging links between the alteration of embryonic and adult neurogenesis
and the etiology of neuropsychiatric disorders (NPDs) such as autism spectrum
disorders (ASDs) and schizophrenia (SCZ), as well as the advances in stem cell-based
modeling and the novel therapeutic targets derived from these studies.
article_processing_charge: No
author:
- first_name: Roberto
full_name: Sacco, Roberto
id: 42C9F57E-F248-11E8-B48F-1D18A9856A87
last_name: Sacco
- first_name: Emanuele
full_name: Cacci, Emanuele
last_name: Cacci
- first_name: Gaia
full_name: Novarino, Gaia
id: 3E57A680-F248-11E8-B48F-1D18A9856A87
last_name: Novarino
orcid: 0000-0002-7673-7178
citation:
ama: Sacco R, Cacci E, Novarino G. Neural stem cells in neuropsychiatric disorders.
Current Opinion in Neurobiology. 2018;48(2):131-138. doi:10.1016/j.conb.2017.12.005
apa: Sacco, R., Cacci, E., & Novarino, G. (2018). Neural stem cells in neuropsychiatric
disorders. Current Opinion in Neurobiology. Elsevier. https://doi.org/10.1016/j.conb.2017.12.005
chicago: Sacco, Roberto, Emanuele Cacci, and Gaia Novarino. “Neural Stem Cells in
Neuropsychiatric Disorders.” Current Opinion in Neurobiology. Elsevier,
2018. https://doi.org/10.1016/j.conb.2017.12.005.
ieee: R. Sacco, E. Cacci, and G. Novarino, “Neural stem cells in neuropsychiatric
disorders,” Current Opinion in Neurobiology, vol. 48, no. 2. Elsevier,
pp. 131–138, 2018.
ista: Sacco R, Cacci E, Novarino G. 2018. Neural stem cells in neuropsychiatric
disorders. Current Opinion in Neurobiology. 48(2), 131–138.
mla: Sacco, Roberto, et al. “Neural Stem Cells in Neuropsychiatric Disorders.” Current
Opinion in Neurobiology, vol. 48, no. 2, Elsevier, 2018, pp. 131–38, doi:10.1016/j.conb.2017.12.005.
short: R. Sacco, E. Cacci, G. Novarino, Current Opinion in Neurobiology 48 (2018)
131–138.
corr_author: '1'
date_created: 2018-12-11T11:47:06Z
date_published: 2018-02-01T00:00:00Z
date_updated: 2024-10-09T20:58:31Z
day: '01'
department:
- _id: GaNo
doi: 10.1016/j.conb.2017.12.005
external_id:
isi:
- '000427101600018'
fulldoi: https://doi.org/10.1016/j.conb.2017.12.005
intvolume: ' 48'
isi: 1
issue: '2'
language:
- iso: eng
month: '02'
oa_version: None
page: 131 - 138
publication: Current Opinion in Neurobiology
publication_status: published
publisher: Elsevier
publist_id: '7268'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Neural stem cells in neuropsychiatric disorders
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 48
year: '2018'
...
---
_id: '55'
abstract:
- lang: eng
text: Many animals use antimicrobials to prevent or cure disease [1,2]. For example,
some animals will ingest plants with medicinal properties, both prophylactically
to prevent infection and therapeutically to self-medicate when sick. Antimicrobial
substances are also used as topical disinfectants, to prevent infection, protect
offspring and to sanitise their surroundings [1,2]. Social insects (ants, bees,
wasps and termites) build nests in environments with a high abundance and diversity
of pathogenic microorganisms — such as soil and rotting wood — and colonies are
often densely crowded, creating conditions that favour disease outbreaks. Consequently,
social insects have evolved collective disease defences to protect their colonies
from epidemics. These traits can be seen as functionally analogous to the immune
system of individual organisms [3,4]. This ‘social immunity’ utilises antimicrobials
to prevent and eradicate infections, and to keep the brood and nest clean. However,
these antimicrobial compounds can be harmful to the insects themselves, and it
is unknown how colonies prevent collateral damage when using them. Here, we demonstrate
that antimicrobial acids, produced by workers to disinfect the colony, are harmful
to the delicate pupal brood stage, but that the pupae are protected from the acids
by the presence of a silk cocoon. Garden ants spray their nests with an antimicrobial
poison to sanitize contaminated nestmates and brood. Here, Pull et al show that
they also prophylactically sanitise their colonies, and that the silk cocoon serves
as a barrier to protect developing pupae, thus preventing collateral damage during
nest sanitation.
article_processing_charge: No
article_type: original
author:
- first_name: Christopher
full_name: Pull, Christopher
id: 3C7F4840-F248-11E8-B48F-1D18A9856A87
last_name: Pull
orcid: 0000-0003-1122-3982
- first_name: Sina
full_name: Metzler, Sina
id: 48204546-F248-11E8-B48F-1D18A9856A87
last_name: Metzler
orcid: 0000-0002-9547-2494
- first_name: Elisabeth
full_name: Naderlinger, Elisabeth
id: 31757262-F248-11E8-B48F-1D18A9856A87
last_name: Naderlinger
- first_name: Sylvia
full_name: Cremer, Sylvia
id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
last_name: Cremer
orcid: 0000-0002-2193-3868
citation:
ama: Pull C, Metzler S, Naderlinger E, Cremer S. Protection against the lethal side
effects of social immunity in ants. Current Biology. 2018;28(19):R1139-R1140.
doi:10.1016/j.cub.2018.08.063
apa: Pull, C., Metzler, S., Naderlinger, E., & Cremer, S. (2018). Protection
against the lethal side effects of social immunity in ants. Current Biology.
Cell Press. https://doi.org/10.1016/j.cub.2018.08.063
chicago: Pull, Christopher, Sina Metzler, Elisabeth Naderlinger, and Sylvia Cremer.
“Protection against the Lethal Side Effects of Social Immunity in Ants.” Current
Biology. Cell Press, 2018. https://doi.org/10.1016/j.cub.2018.08.063.
ieee: C. Pull, S. Metzler, E. Naderlinger, and S. Cremer, “Protection against the
lethal side effects of social immunity in ants,” Current Biology, vol.
28, no. 19. Cell Press, pp. R1139–R1140, 2018.
ista: Pull C, Metzler S, Naderlinger E, Cremer S. 2018. Protection against the lethal
side effects of social immunity in ants. Current Biology. 28(19), R1139–R1140.
mla: Pull, Christopher, et al. “Protection against the Lethal Side Effects of Social
Immunity in Ants.” Current Biology, vol. 28, no. 19, Cell Press, 2018,
pp. R1139–40, doi:10.1016/j.cub.2018.08.063.
short: C. Pull, S. Metzler, E. Naderlinger, S. Cremer, Current Biology 28 (2018)
R1139–R1140.
date_created: 2018-12-11T11:44:23Z
date_published: 2018-10-08T00:00:00Z
date_updated: 2026-06-18T18:53:43Z
day: '08'
ddc:
- '570'
department:
- _id: SyCr
doi: 10.1016/j.cub.2018.08.063
external_id:
isi:
- '000446693400008'
fulldoi: https://doi.org/10.1016/j.cub.2018.08.063
intvolume: ' 28'
isi: 1
issue: '19'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.cub.2018.08.063
month: '10'
oa: 1
oa_version: Published Version
page: R1139 - R1140
publication: Current Biology
publication_status: published
publisher: Cell Press
publist_id: '7999'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Protection against the lethal side effects of social immunity in ants
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 28
year: '2018'
...
---
_id: '554'
abstract:
- lang: eng
text: We analyse the canonical Bogoliubov free energy functional in three dimensions
at low temperatures in the dilute limit. We prove existence of a first-order phase
transition and, in the limit (Formula presented.), we determine the critical temperature
to be (Formula presented.) to leading order. Here, (Formula presented.) is the
critical temperature of the free Bose gas, ρ is the density of the gas and a is
the scattering length of the pair-interaction potential V. We also prove asymptotic
expansions for the free energy. In particular, we recover the Lee–Huang–Yang formula
in the limit (Formula presented.).
article_processing_charge: No
arxiv: 1
author:
- first_name: Marcin M
full_name: Napiórkowski, Marcin M
id: 4197AD04-F248-11E8-B48F-1D18A9856A87
last_name: Napiórkowski
- first_name: Robin
full_name: Reuvers, Robin
last_name: Reuvers
- first_name: Jan
full_name: Solovej, Jan
last_name: Solovej
citation:
ama: 'Napiórkowski MM, Reuvers R, Solovej J. The Bogoliubov free energy functional
II: The dilute Limit. Communications in Mathematical Physics. 2018;360(1):347-403.
doi:10.1007/s00220-017-3064-x'
apa: 'Napiórkowski, M. M., Reuvers, R., & Solovej, J. (2018). The Bogoliubov
free energy functional II: The dilute Limit. Communications in Mathematical
Physics. Springer. https://doi.org/10.1007/s00220-017-3064-x'
chicago: 'Napiórkowski, Marcin M, Robin Reuvers, and Jan Solovej. “The Bogoliubov
Free Energy Functional II: The Dilute Limit.” Communications in Mathematical
Physics. Springer, 2018. https://doi.org/10.1007/s00220-017-3064-x.'
ieee: 'M. M. Napiórkowski, R. Reuvers, and J. Solovej, “The Bogoliubov free energy
functional II: The dilute Limit,” Communications in Mathematical Physics,
vol. 360, no. 1. Springer, pp. 347–403, 2018.'
ista: 'Napiórkowski MM, Reuvers R, Solovej J. 2018. The Bogoliubov free energy functional
II: The dilute Limit. Communications in Mathematical Physics. 360(1), 347–403.'
mla: 'Napiórkowski, Marcin M., et al. “The Bogoliubov Free Energy Functional II:
The Dilute Limit.” Communications in Mathematical Physics, vol. 360, no.
1, Springer, 2018, pp. 347–403, doi:10.1007/s00220-017-3064-x.'
short: M.M. Napiórkowski, R. Reuvers, J. Solovej, Communications in Mathematical
Physics 360 (2018) 347–403.
date_created: 2018-12-11T11:47:09Z
date_published: 2018-05-01T00:00:00Z
date_updated: 2025-07-10T11:52:52Z
day: '01'
department:
- _id: RoSe
doi: 10.1007/s00220-017-3064-x
external_id:
arxiv:
- '1511.05953'
fulldoi: https://doi.org/10.1007/s00220-017-3064-x
intvolume: ' 360'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1511.05953
month: '05'
oa: 1
oa_version: Submitted Version
page: 347-403
project:
- _id: 25C878CE-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P27533_N27
name: Structure of the Excitation Spectrum for Many-Body Quantum Systems
publication: Communications in Mathematical Physics
publication_identifier:
issn:
- 0010-3616
publication_status: published
publisher: Springer
publist_id: '7260'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The Bogoliubov free energy functional II: The dilute Limit'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 360
year: '2018'
...
---
_id: '555'
abstract:
- lang: eng
text: Conventional wisdom has it that proteins fold and assemble into definite structures,
and that this defines their function. Glycosaminoglycans (GAGs) are different.
In most cases the structures they form have a low degree of order, even when interacting
with proteins. Here, we discuss how physical features common to all GAGs — hydrophilicity,
charge, linearity and semi-flexibility — underpin the overall properties of GAG-rich
matrices. By integrating soft matter physics concepts (e.g. polymer brushes and
phase separation) with our molecular understanding of GAG–protein interactions,
we can better comprehend how GAG-rich matrices assemble, what their properties
are, and how they function. Taking perineuronal nets (PNNs) — a GAG-rich matrix
enveloping neurons — as a relevant example, we propose that microphase separation
determines the holey PNN anatomy that is pivotal to PNN functions.
acknowledgement: "This work was supported by the European Research Council [Starting
Grant 306435 ‘JELLY’; to RPR], the Spanish Ministry of Competitiveness and Innovation
[MAT2014-54867-R, to RPR], the EPSRC Centre for Doctoral Training in Tissue Engineering
and Regenerative Medicine — Innovation in Medical and Biological Engineering [EP/L014823/1,
to JCFK], the Royal Society [RG160410, to JCFK], Wings for Life [WFL-UK-008/15,
to JCFK] and the European Union, the Operational Programme Research, Development
and Education in the framework of the project ‘Centre of Reconstructive Neuroscience’
[CZ.02.1.01/0.0./0.0/15_003/0000419, to JCFK]. AJD would like to thank Arthritis
Research UK [16539, 19489] and the MRC [76445, G0900538] for funding his work on
GAG–protein interactions.\r\n"
article_processing_charge: No
article_type: original
author:
- first_name: Ralf
full_name: Richter, Ralf
last_name: Richter
- first_name: Natalia
full_name: Baranova, Natalia
id: 38661662-F248-11E8-B48F-1D18A9856A87
last_name: Baranova
orcid: 0000-0002-3086-9124
- first_name: Anthony
full_name: Day, Anthony
last_name: Day
- first_name: Jessica
full_name: Kwok, Jessica
last_name: Kwok
citation:
ama: 'Richter R, Baranova NS, Day A, Kwok J. Glycosaminoglycans in extracellular
matrix organisation: Are concepts from soft matter physics key to understanding
the formation of perineuronal nets? Current Opinion in Structural Biology.
2018;50:65-74. doi:10.1016/j.sbi.2017.12.002'
apa: 'Richter, R., Baranova, N. S., Day, A., & Kwok, J. (2018). Glycosaminoglycans
in extracellular matrix organisation: Are concepts from soft matter physics key
to understanding the formation of perineuronal nets? Current Opinion in Structural
Biology. Elsevier. https://doi.org/10.1016/j.sbi.2017.12.002'
chicago: 'Richter, Ralf, Natalia S. Baranova, Anthony Day, and Jessica Kwok. “Glycosaminoglycans
in Extracellular Matrix Organisation: Are Concepts from Soft Matter Physics Key
to Understanding the Formation of Perineuronal Nets?” Current Opinion in Structural
Biology. Elsevier, 2018. https://doi.org/10.1016/j.sbi.2017.12.002.'
ieee: 'R. Richter, N. S. Baranova, A. Day, and J. Kwok, “Glycosaminoglycans in extracellular
matrix organisation: Are concepts from soft matter physics key to understanding
the formation of perineuronal nets?,” Current Opinion in Structural Biology,
vol. 50. Elsevier, pp. 65–74, 2018.'
ista: 'Richter R, Baranova NS, Day A, Kwok J. 2018. Glycosaminoglycans in extracellular
matrix organisation: Are concepts from soft matter physics key to understanding
the formation of perineuronal nets? Current Opinion in Structural Biology. 50,
65–74.'
mla: 'Richter, Ralf, et al. “Glycosaminoglycans in Extracellular Matrix Organisation:
Are Concepts from Soft Matter Physics Key to Understanding the Formation of Perineuronal
Nets?” Current Opinion in Structural Biology, vol. 50, Elsevier, 2018,
pp. 65–74, doi:10.1016/j.sbi.2017.12.002.'
short: R. Richter, N.S. Baranova, A. Day, J. Kwok, Current Opinion in Structural
Biology 50 (2018) 65–74.
date_created: 2018-12-11T11:47:09Z
date_published: 2018-06-01T00:00:00Z
date_updated: 2023-09-11T14:07:03Z
day: '01'
department:
- _id: MaLo
doi: 10.1016/j.sbi.2017.12.002
external_id:
isi:
- '000443661300011'
fulldoi: https://doi.org/10.1016/j.sbi.2017.12.002
intvolume: ' 50'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://eprints.whiterose.ac.uk/125524/
month: '06'
oa: 1
oa_version: Submitted Version
page: 65 - 74
publication: Current Opinion in Structural Biology
publication_status: published
publisher: Elsevier
publist_id: '7259'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Glycosaminoglycans in extracellular matrix organisation: Are concepts from
soft matter physics key to understanding the formation of perineuronal nets?'
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 50
year: '2018'
...
---
_id: '556'
abstract:
- lang: eng
text: 'We investigate the free boundary Schur process, a variant of the Schur process
introduced by Okounkov and Reshetikhin, where we allow the first and the last
partitions to be arbitrary (instead of empty in the original setting). The pfaffian
Schur process, previously studied by several authors, is recovered when just one
of the boundary partitions is left free. We compute the correlation functions
of the process in all generality via the free fermion formalism, which we extend
with the thorough treatment of “free boundary states.” For the case of one free
boundary, our approach yields a new proof that the process is pfaffian. For the
case of two free boundaries, we find that the process is not pfaffian, but a closely
related process is. We also study three different applications of the Schur process
with one free boundary: fluctuations of symmetrized last passage percolation models,
limit shapes and processes for symmetric plane partitions and for plane overpartitions.'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Dan
full_name: Betea, Dan
last_name: Betea
- first_name: Jeremie
full_name: Bouttier, Jeremie
last_name: Bouttier
- first_name: Peter
full_name: Nejjar, Peter
id: 4BF426E2-F248-11E8-B48F-1D18A9856A87
last_name: Nejjar
- first_name: Mirjana
full_name: Vuletic, Mirjana
last_name: Vuletic
citation:
ama: Betea D, Bouttier J, Nejjar P, Vuletic M. The free boundary Schur process and
applications I. Annales Henri Poincare. 2018;19(12):3663-3742. doi:10.1007/s00023-018-0723-1
apa: Betea, D., Bouttier, J., Nejjar, P., & Vuletic, M. (2018). The free boundary
Schur process and applications I. Annales Henri Poincare. Springer Nature.
https://doi.org/10.1007/s00023-018-0723-1
chicago: Betea, Dan, Jeremie Bouttier, Peter Nejjar, and Mirjana Vuletic. “The Free
Boundary Schur Process and Applications I.” Annales Henri Poincare. Springer
Nature, 2018. https://doi.org/10.1007/s00023-018-0723-1.
ieee: D. Betea, J. Bouttier, P. Nejjar, and M. Vuletic, “The free boundary Schur
process and applications I,” Annales Henri Poincare, vol. 19, no. 12. Springer
Nature, pp. 3663–3742, 2018.
ista: Betea D, Bouttier J, Nejjar P, Vuletic M. 2018. The free boundary Schur process
and applications I. Annales Henri Poincare. 19(12), 3663–3742.
mla: Betea, Dan, et al. “The Free Boundary Schur Process and Applications I.” Annales
Henri Poincare, vol. 19, no. 12, Springer Nature, 2018, pp. 3663–742, doi:10.1007/s00023-018-0723-1.
short: D. Betea, J. Bouttier, P. Nejjar, M. Vuletic, Annales Henri Poincare 19 (2018)
3663–3742.
date_created: 2018-12-11T11:47:09Z
date_published: 2018-11-13T00:00:00Z
date_updated: 2025-09-18T07:34:29Z
day: '13'
ddc:
- '500'
department:
- _id: LaEr
- _id: JaMa
doi: 10.1007/s00023-018-0723-1
ec_funded: 1
external_id:
arxiv:
- '1704.05809'
isi:
- '000450487900003'
file:
- access_level: open_access
checksum: 0c38abe73569b7166b7487ad5d23cc68
content_type: application/pdf
creator: dernst
date_created: 2019-01-21T15:18:55Z
date_updated: 2020-07-14T12:47:03Z
file_id: '5866'
file_name: 2018_Annales_Betea.pdf
file_size: 3084674
relation: main_file
file_date_updated: 2020-07-14T12:47:03Z
fulldoi: https://doi.org/10.1007/s00023-018-0723-1
has_accepted_license: '1'
intvolume: ' 19'
isi: 1
issue: '12'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 3663-3742
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '338804'
name: Random matrices, universality and disordered quantum systems
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '716117'
name: Optimal Transport and Stochastic Dynamics
publication: Annales Henri Poincare
publication_identifier:
issn:
- 1424-0637
publication_status: published
publisher: Springer Nature
publist_id: '7258'
quality_controlled: '1'
scopus_import: '1'
status: public
title: The free boundary Schur process and applications I
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 19
year: '2018'
...