---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21370'
abstract:
- lang: eng
  text: Through digital imaging, microscopy has evolved from primarily being a means
    for visual observation of life at the micro- and nano-scale, to a quantitative
    tool with ever-increasing resolution and throughput. Artificial intelligence,
    deep neural networks, and machine learning (ML) are all niche terms describing
    computational methods that have gained a pivotal role in microscopy-based research
    over the past decade. This Roadmap encompasses key aspects of how ML is applied
    to microscopy image data, with the aim of gaining scientific knowledge by improved
    image quality, automated detection, segmentation, classification and tracking
    of objects, and efficient merging of information from multiple imaging modalities.
    We aim to give the reader an overview of the key developments and an understanding
    of possibilities and limitations of ML for microscopy. It will be of interest
    to a wide cross-disciplinary audience in the physical sciences and life sciences.
article_number: '012501'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Giovanni
  full_name: Volpe, Giovanni
  last_name: Volpe
- first_name: Carolina
  full_name: Wählby, Carolina
  last_name: Wählby
- first_name: Lei
  full_name: Tian, Lei
  last_name: Tian
- first_name: Michael
  full_name: Hecht, Michael
  last_name: Hecht
- first_name: Artur
  full_name: Yakimovich, Artur
  last_name: Yakimovich
- first_name: Kristina
  full_name: Monakhova, Kristina
  last_name: Monakhova
- first_name: Laura
  full_name: Waller, Laura
  last_name: Waller
- first_name: Ivo F.
  full_name: Sbalzarini, Ivo F.
  last_name: Sbalzarini
- first_name: Christopher A.
  full_name: Metzler, Christopher A.
  last_name: Metzler
- first_name: Mingyang
  full_name: Xie, Mingyang
  last_name: Xie
- first_name: Kevin
  full_name: Zhang, Kevin
  last_name: Zhang
- first_name: Isaac C
  full_name: Lenton, Isaac C
  id: a550210f-223c-11ec-8182-e2d45e817efb
  last_name: Lenton
  orcid: 0000-0002-5010-6984
- first_name: Halina
  full_name: Rubinsztein-Dunlop, Halina
  last_name: Rubinsztein-Dunlop
- first_name: Daniel
  full_name: Brunner, Daniel
  last_name: Brunner
- first_name: Bijie
  full_name: Bai, Bijie
  last_name: Bai
- first_name: Aydogan
  full_name: Ozcan, Aydogan
  last_name: Ozcan
- first_name: Daniel
  full_name: Midtvedt, Daniel
  last_name: Midtvedt
- first_name: Hao
  full_name: Wang, Hao
  last_name: Wang
- first_name: Tongyu
  full_name: Li, Tongyu
  last_name: Li
- first_name: Nataša
  full_name: Sladoje, Nataša
  last_name: Sladoje
- first_name: Joakim
  full_name: Lindblad, Joakim
  last_name: Lindblad
- first_name: Jason T.
  full_name: Smith, Jason T.
  last_name: Smith
- first_name: Marien
  full_name: Ochoa, Marien
  last_name: Ochoa
- first_name: Margarida
  full_name: Barroso, Margarida
  last_name: Barroso
- first_name: Xavier
  full_name: Intes, Xavier
  last_name: Intes
- first_name: Tong
  full_name: Qiu, Tong
  last_name: Qiu
- first_name: Li Yu
  full_name: Yu, Li Yu
  last_name: Yu
- first_name: Sixian
  full_name: You, Sixian
  last_name: You
- first_name: Yongtao
  full_name: Liu, Yongtao
  last_name: Liu
- first_name: Maxim A.
  full_name: Ziatdinov, Maxim A.
  last_name: Ziatdinov
- first_name: Sergei V.
  full_name: Kalinin, Sergei V.
  last_name: Kalinin
- first_name: Arlo
  full_name: Sheridan, Arlo
  last_name: Sheridan
- first_name: Uri
  full_name: Manor, Uri
  last_name: Manor
- first_name: Elias
  full_name: Nehme, Elias
  last_name: Nehme
- first_name: Ofri
  full_name: Goldenberg, Ofri
  last_name: Goldenberg
- first_name: Yoav
  full_name: Shechtman, Yoav
  last_name: Shechtman
- first_name: Henrik K.
  full_name: Moberg, Henrik K.
  last_name: Moberg
- first_name: Christoph
  full_name: Langhammer, Christoph
  last_name: Langhammer
- first_name: Barbora
  full_name: Špačková, Barbora
  last_name: Špačková
- first_name: Saga
  full_name: Helgadottir, Saga
  last_name: Helgadottir
- first_name: Benjamin
  full_name: Midtvedt, Benjamin
  last_name: Midtvedt
- first_name: Aykut
  full_name: Argun, Aykut
  last_name: Argun
- first_name: Tobias
  full_name: Thalheim, Tobias
  last_name: Thalheim
- first_name: Frank
  full_name: Cichos, Frank
  last_name: Cichos
- first_name: Stefano
  full_name: Bo, Stefano
  last_name: Bo
- first_name: Lars
  full_name: Hubatsch, Lars
  last_name: Hubatsch
- first_name: Jesus
  full_name: Pineda, Jesus
  last_name: Pineda
- first_name: Carlo
  full_name: Manzo, Carlo
  last_name: Manzo
- first_name: Harshith
  full_name: Bachimanchi, Harshith
  last_name: Bachimanchi
- first_name: Erik
  full_name: Selander, Erik
  last_name: Selander
- first_name: Antoni
  full_name: Homs-Corbera, Antoni
  last_name: Homs-Corbera
- first_name: Martin
  full_name: Fränzl, Martin
  last_name: Fränzl
- first_name: Kevin
  full_name: De Haan, Kevin
  last_name: De Haan
- first_name: Yair
  full_name: Rivenson, Yair
  last_name: Rivenson
- first_name: Zofia
  full_name: Korczak, Zofia
  last_name: Korczak
- first_name: Caroline Beck
  full_name: Adiels, Caroline Beck
  last_name: Adiels
- first_name: Mite
  full_name: Mijalkov, Mite
  last_name: Mijalkov
- first_name: Dániel
  full_name: Veréb, Dániel
  last_name: Veréb
- first_name: Yu Wei
  full_name: Chang, Yu Wei
  last_name: Chang
- first_name: Joana B.
  full_name: Pereira, Joana B.
  last_name: Pereira
- first_name: Damian
  full_name: Matuszewski, Damian
  last_name: Matuszewski
- first_name: Gustaf
  full_name: Kylberg, Gustaf
  last_name: Kylberg
- first_name: Ida Maria
  full_name: Sintorn, Ida Maria
  last_name: Sintorn
- first_name: Juan C.
  full_name: Caicedo, Juan C.
  last_name: Caicedo
- first_name: Beth A.
  full_name: Cimini, Beth A.
  last_name: Cimini
- first_name: Muyinatu A.
  full_name: Lediju Bell, Muyinatu A.
  last_name: Lediju Bell
- first_name: Bruno M.
  full_name: Saraiva, Bruno M.
  last_name: Saraiva
- first_name: Guillaume
  full_name: Jacquemet, Guillaume
  last_name: Jacquemet
- first_name: Ricardo
  full_name: Henriques, Ricardo
  last_name: Henriques
- first_name: Wei
  full_name: Ouyang, Wei
  last_name: Ouyang
- first_name: Trang
  full_name: Le, Trang
  last_name: Le
- first_name: Estibaliz
  full_name: Gómez-De-Mariscal, Estibaliz
  last_name: Gómez-De-Mariscal
- first_name: Daniel
  full_name: Sage, Daniel
  last_name: Sage
- first_name: Arrate
  full_name: Muñoz-Barrutia, Arrate
  last_name: Muñoz-Barrutia
- first_name: Ebba Josefson
  full_name: Lindqvist, Ebba Josefson
  last_name: Lindqvist
- first_name: Johanna
  full_name: Bergman, Johanna
  last_name: Bergman
citation:
  ama: 'Volpe G, Wählby C, Tian L, et al. Roadmap on deep learning for microscopy.
    <i>Journal of Physics: Photonics</i>. 2026;8(1). doi:<a href="https://doi.org/10.1088/2515-7647/ae0fd1">10.1088/2515-7647/ae0fd1</a>'
  apa: 'Volpe, G., Wählby, C., Tian, L., Hecht, M., Yakimovich, A., Monakhova, K.,
    … Bergman, J. (2026). Roadmap on deep learning for microscopy. <i>Journal of Physics:
    Photonics</i>. IOP Publishing. <a href="https://doi.org/10.1088/2515-7647/ae0fd1">https://doi.org/10.1088/2515-7647/ae0fd1</a>'
  chicago: 'Volpe, Giovanni, Carolina Wählby, Lei Tian, Michael Hecht, Artur Yakimovich,
    Kristina Monakhova, Laura Waller, et al. “Roadmap on Deep Learning for Microscopy.”
    <i>Journal of Physics: Photonics</i>. IOP Publishing, 2026. <a href="https://doi.org/10.1088/2515-7647/ae0fd1">https://doi.org/10.1088/2515-7647/ae0fd1</a>.'
  ieee: 'G. Volpe <i>et al.</i>, “Roadmap on deep learning for microscopy,” <i>Journal
    of Physics: Photonics</i>, vol. 8, no. 1. IOP Publishing, 2026.'
  ista: 'Volpe G, Wählby C, Tian L, Hecht M, Yakimovich A, Monakhova K, Waller L,
    Sbalzarini IF, Metzler CA, Xie M, Zhang K, Lenton IC, Rubinsztein-Dunlop H, Brunner
    D, Bai B, Ozcan A, Midtvedt D, Wang H, Li T, Sladoje N, Lindblad J, Smith JT,
    Ochoa M, Barroso M, Intes X, Qiu T, Yu LY, You S, Liu Y, Ziatdinov MA, Kalinin
    SV, Sheridan A, Manor U, Nehme E, Goldenberg O, Shechtman Y, Moberg HK, Langhammer
    C, Špačková B, Helgadottir S, Midtvedt B, Argun A, Thalheim T, Cichos F, Bo S,
    Hubatsch L, Pineda J, Manzo C, Bachimanchi H, Selander E, Homs-Corbera A, Fränzl
    M, De Haan K, Rivenson Y, Korczak Z, Adiels CB, Mijalkov M, Veréb D, Chang YW,
    Pereira JB, Matuszewski D, Kylberg G, Sintorn IM, Caicedo JC, Cimini BA, Lediju
    Bell MA, Saraiva BM, Jacquemet G, Henriques R, Ouyang W, Le T, Gómez-De-Mariscal
    E, Sage D, Muñoz-Barrutia A, Lindqvist EJ, Bergman J. 2026. Roadmap on deep learning
    for microscopy. Journal of Physics: Photonics. 8(1), 012501.'
  mla: 'Volpe, Giovanni, et al. “Roadmap on Deep Learning for Microscopy.” <i>Journal
    of Physics: Photonics</i>, vol. 8, no. 1, 012501, IOP Publishing, 2026, doi:<a
    href="https://doi.org/10.1088/2515-7647/ae0fd1">10.1088/2515-7647/ae0fd1</a>.'
  short: 'G. Volpe, C. Wählby, L. Tian, M. Hecht, A. Yakimovich, K. Monakhova, L.
    Waller, I.F. Sbalzarini, C.A. Metzler, M. Xie, K. Zhang, I.C. Lenton, H. Rubinsztein-Dunlop,
    D. Brunner, B. Bai, A. Ozcan, D. Midtvedt, H. Wang, T. Li, N. Sladoje, J. Lindblad,
    J.T. Smith, M. Ochoa, M. Barroso, X. Intes, T. Qiu, L.Y. Yu, S. You, Y. Liu, M.A.
    Ziatdinov, S.V. Kalinin, A. Sheridan, U. Manor, E. Nehme, O. Goldenberg, Y. Shechtman,
    H.K. Moberg, C. Langhammer, B. Špačková, S. Helgadottir, B. Midtvedt, A. Argun,
    T. Thalheim, F. Cichos, S. Bo, L. Hubatsch, J. Pineda, C. Manzo, H. Bachimanchi,
    E. Selander, A. Homs-Corbera, M. Fränzl, K. De Haan, Y. Rivenson, Z. Korczak,
    C.B. Adiels, M. Mijalkov, D. Veréb, Y.W. Chang, J.B. Pereira, D. Matuszewski,
    G. Kylberg, I.M. Sintorn, J.C. Caicedo, B.A. Cimini, M.A. Lediju Bell, B.M. Saraiva,
    G. Jacquemet, R. Henriques, W. Ouyang, T. Le, E. Gómez-De-Mariscal, D. Sage, A.
    Muñoz-Barrutia, E.J. Lindqvist, J. Bergman, Journal of Physics: Photonics 8 (2026).'
date_created: 2026-03-01T23:01:39Z
date_published: 2026-03-01T00:00:00Z
date_updated: 2026-03-23T13:18:11Z
day: '01'
ddc:
- '530'
department:
- _id: ScWa
doi: 10.1088/2515-7647/ae0fd1
external_id:
  arxiv:
  - '2303.03793'
file:
- access_level: open_access
  checksum: 172720f1f0c5c9d06a282e52023a0030
  content_type: application/pdf
  creator: dernst
  date_created: 2026-03-02T09:05:53Z
  date_updated: 2026-03-02T09:05:53Z
  file_id: '21375'
  file_name: 2026_JPhysPhotonics_Volpe.pdf
  file_size: 16789781
  relation: main_file
  success: 1
file_date_updated: 2026-03-02T09:05:53Z
has_accepted_license: '1'
intvolume: '         8'
issue: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: 'Journal of Physics: Photonics'
publication_identifier:
  eissn:
  - 2515-7647
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Roadmap on deep learning for microscopy
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2026'
...
---
OA_type: closed access
_id: '21371'
abstract:
- lang: eng
  text: There may be a newly identified early phase of supermassive black hole growth
acknowledgement: The author acknowledges the support from the European Union (European
  Research Council, AGENTS, 101076224).
article_processing_charge: No
article_type: comment
author:
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
citation:
  ama: Matthee JJ. Black holes disguised as little red dots. <i>Science</i>. 2026;391(6787):767-768.
    doi:<a href="https://doi.org/10.1126/science.adz8603">10.1126/science.adz8603</a>
  apa: Matthee, J. J. (2026). Black holes disguised as little red dots. <i>Science</i>.
    AAAS. <a href="https://doi.org/10.1126/science.adz8603">https://doi.org/10.1126/science.adz8603</a>
  chicago: Matthee, Jorryt J. “Black Holes Disguised as Little Red Dots.” <i>Science</i>.
    AAAS, 2026. <a href="https://doi.org/10.1126/science.adz8603">https://doi.org/10.1126/science.adz8603</a>.
  ieee: J. J. Matthee, “Black holes disguised as little red dots,” <i>Science</i>,
    vol. 391, no. 6787. AAAS, pp. 767–768, 2026.
  ista: Matthee JJ. 2026. Black holes disguised as little red dots. Science. 391(6787),
    767–768.
  mla: Matthee, Jorryt J. “Black Holes Disguised as Little Red Dots.” <i>Science</i>,
    vol. 391, no. 6787, AAAS, 2026, pp. 767–68, doi:<a href="https://doi.org/10.1126/science.adz8603">10.1126/science.adz8603</a>.
  short: J.J. Matthee, Science 391 (2026) 767–768.
corr_author: '1'
date_created: 2026-03-01T23:01:39Z
date_published: 2026-02-19T00:00:00Z
date_updated: 2026-03-02T09:15:45Z
day: '19'
department:
- _id: JoMa
doi: 10.1126/science.adz8603
external_id:
  pmid:
  - '41712710'
intvolume: '       391'
issue: '6787'
language:
- iso: eng
month: '02'
oa_version: None
page: 767-768
pmid: 1
project:
- _id: bd9b2118-d553-11ed-ba76-db24564edfea
  grant_number: '101076224'
  name: Young galaxies as tracers and agents of cosmic reionization
publication: Science
publication_identifier:
  eissn:
  - 1095-9203
publication_status: published
publisher: AAAS
quality_controlled: '1'
scopus_import: '1'
status: public
title: Black holes disguised as little red dots
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 391
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21373'
abstract:
- lang: eng
  text: Cold atom experiments show that a mobile impurity particle immersed in a weakly
    interacting Bose-Einstein condensate forms a well-defined quasiparticle (Bose
    polaron) for weak to moderate impurity-boson interaction strengths, whereas a
    significant line broadening is consistently observed for strong interactions.
    Motivated by this, we introduce a phenomenological theory based on the assumption
    that the most relevant states are characterized by the impurity correlated with
    at most one boson, since they have the largest overlap with the uncorrelated states
    to which the most common experimental probes couple. These experimentally relevant
    states can, however, decay to lower energy states characterized by correlations
    involving multiple bosons, and we model this using a minimal variational wave
    function combined with a complex impurity-boson interaction strength. We first
    motivate this approach by comparing to a more elaborate theory that includes correlations
    with up to two bosons. Our phenomenological model is shown to recover the main
    results of two recent experiments probing both the spectral and the nonequilibrium
    properties of the Bose polaron. Our work offers an intuitive framework for analyzing
    experimental data and highlights the importance of understanding the complicated
    problem of the Bose polaron decay in a many-body setting.
acknowledgement: We thank Georgios Koutentakis, Frédéric Chevy, Hussam Al Daas, and
  Richard Schmidt for fruitful discussions; Jan Arlt for sharing their experimental
  data and many fruitful discussions; and Christoph Eigen for sharing their experimental
  data and inspiring discussions. R.A., T.P., and G.M.B. have been supported in part
  by the Danish National Research Foundation through the Center of Excellence “CCQ”
  (Grant Agreement No. DNRF156) and the Independent Research Fund Denmark–Natural
  Sciences via Grant No. DFF-8021-00233B. R.A., A.G.V., and M.L. acknowledge support
  by the European Research Council (ERC) Starting Grant No. 801770 (ANGULON). R.A.
  received funding from the Austrian Academy of Science ÖAW Grant No. PR1029OEAW03.
article_number: L012034
article_processing_charge: No
article_type: letter_note
arxiv: 1
author:
- first_name: Ragheed
  full_name: Al Hyder, Ragheed
  id: d1c405be-ae15-11ed-8510-ccf53278162e
  last_name: Al Hyder
- first_name: G. M.
  full_name: Bruun, G. M.
  last_name: Bruun
- first_name: T.
  full_name: Pohl, T.
  last_name: Pohl
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Artem
  full_name: Volosniev, Artem
  id: 37D278BC-F248-11E8-B48F-1D18A9856A87
  last_name: Volosniev
  orcid: 0000-0003-0393-5525
citation:
  ama: Al Hyder R, Bruun GM, Pohl T, Lemeshko M, Volosniev A. Phenomenological model
    of decaying Bose polarons. <i>Physical Review Research</i>. 2026;8. doi:<a href="https://doi.org/10.1103/16dk-5dgx">10.1103/16dk-5dgx</a>
  apa: Al Hyder, R., Bruun, G. M., Pohl, T., Lemeshko, M., &#38; Volosniev, A. (2026).
    Phenomenological model of decaying Bose polarons. <i>Physical Review Research</i>.
    American Physical Society. <a href="https://doi.org/10.1103/16dk-5dgx">https://doi.org/10.1103/16dk-5dgx</a>
  chicago: Al Hyder, Ragheed, G. M. Bruun, T. Pohl, Mikhail Lemeshko, and Artem Volosniev.
    “Phenomenological Model of Decaying Bose Polarons.” <i>Physical Review Research</i>.
    American Physical Society, 2026. <a href="https://doi.org/10.1103/16dk-5dgx">https://doi.org/10.1103/16dk-5dgx</a>.
  ieee: R. Al Hyder, G. M. Bruun, T. Pohl, M. Lemeshko, and A. Volosniev, “Phenomenological
    model of decaying Bose polarons,” <i>Physical Review Research</i>, vol. 8. American
    Physical Society, 2026.
  ista: Al Hyder R, Bruun GM, Pohl T, Lemeshko M, Volosniev A. 2026. Phenomenological
    model of decaying Bose polarons. Physical Review Research. 8, L012034.
  mla: Al Hyder, Ragheed, et al. “Phenomenological Model of Decaying Bose Polarons.”
    <i>Physical Review Research</i>, vol. 8, L012034, American Physical Society, 2026,
    doi:<a href="https://doi.org/10.1103/16dk-5dgx">10.1103/16dk-5dgx</a>.
  short: R. Al Hyder, G.M. Bruun, T. Pohl, M. Lemeshko, A. Volosniev, Physical Review
    Research 8 (2026).
corr_author: '1'
date_created: 2026-03-01T23:01:39Z
date_published: 2026-02-06T00:00:00Z
date_updated: 2026-03-02T09:27:26Z
day: '06'
ddc:
- '530'
department:
- _id: MiLe
doi: 10.1103/16dk-5dgx
ec_funded: 1
external_id:
  arxiv:
  - '2507.04143'
file:
- access_level: open_access
  checksum: 172720f1f0c5c9d06a282e52023a0030
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  creator: dernst
  date_created: 2026-03-02T09:24:44Z
  date_updated: 2026-03-02T09:24:44Z
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  success: 1
file_date_updated: 2026-03-02T09:24:44Z
has_accepted_license: '1'
intvolume: '         8'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
project:
- _id: 2688CF98-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '801770'
  name: 'Angulon: physics and applications of a new quasiparticle'
- _id: 8fa7db46-16d5-11f0-9cad-917600954daf
  grant_number: '12078'
  name: Polarons in Lead Halide Perovskites
publication: Physical Review Research
publication_identifier:
  issn:
  - 2643-1564
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Phenomenological model of decaying Bose polarons
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2026'
...
---
OA_place: repository
OA_type: green
_id: '21374'
abstract:
- lang: eng
  text: "Let . S be a set of distinct points in general position in the\r\nEuclidean
    plane. A plane Hamiltonian path on . S is a crossing-free geometric path such
    that every point of .S is a vertex of the path. It is\r\nknown that, if. S is
    sufficiently large, there exist three edge-disjoint plane\r\nHamiltonian paths
    on . S. In this paper we study an edge-constrained\r\nversion of the problem of
    finding Hamiltonian paths on a point set. We\r\nfirst consider the problem of
    finding a single plane Hamiltonian path . π\r\nwith endpoints .s, t ∈ S and constraints
    given by a segment . ab, where\r\n.a, b ∈ S. We consider the following scenarios:
    (i) .ab ∈ π; (ii) .ab π. We\r\ncharacterize those quintuples . S, a, b, s, t for
    which . π exists. Secondly,\r\nwe consider the problem of finding two plane Hamiltonian
    paths . π1, π2\r\non a set . S with constraints given by a segment . ab, where
    .a, b ∈ S. We\r\nconsider the following scenarios: (i) .π1 and .π2 share no edges
    and .ab is\r\nan edge of . π1; (ii) .π1 and .π2 share no edges and none of them
    includes\r\n.ab as an edge; (iii) both .π1 and .π2 include .ab as an edge and
    share no\r\nother edges. In all cases, we characterize those triples . S, a, b
    for which\r\n.π1 and .π2 exist."
acknowledgement: "We thank the organizers of the HOMONOLO 2024 workshop in Nová Louka,
  Czech Republic, for the fruitful atmosphere where the research on this project was
  initiated.\r\n\r\nT. Antić, A. Džuklevski, J. Kratochvíl and M. Saumell received
  funding from GAČR grant 23–04949X, T.A and A.Dž were additionally supported by GAUK
  grant SVV–2025–260822. G. Liotta was supported in part by MUR of Italy, PRIN Project
  no. 2022TS4Y3N – EXPAND and PON Project ARS01_00540. J. Fiala was in part supported
  by GAČR grant 25-16847S."
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Todor
  full_name: Antić, Todor
  last_name: Antić
- first_name: Aleksa
  full_name: Džuklevski, Aleksa
  last_name: Džuklevski
- first_name: Jiří
  full_name: Fiala, Jiří
  last_name: Fiala
- first_name: Jan
  full_name: Kratochvíl, Jan
  last_name: Kratochvíl
- first_name: Giuseppe
  full_name: Liotta, Giuseppe
  last_name: Liotta
- first_name: Morteza
  full_name: Saghafian, Morteza
  id: f86f7148-b140-11ec-9577-95435b8df824
  last_name: Saghafian
- first_name: Maria
  full_name: Saumell, Maria
  last_name: Saumell
- first_name: Johannes
  full_name: Zink, Johannes
  last_name: Zink
citation:
  ama: 'Antić T, Džuklevski A, Fiala J, et al. Edge-constrained Hamiltonian paths
    on a point set. In: <i>51st International Conference on Current Trends in Theory
    and Practice of Computer Science</i>. Vol 16448. Springer Nature; 2026:532-546.
    doi:<a href="https://doi.org/10.1007/978-3-032-17801-5_39">10.1007/978-3-032-17801-5_39</a>'
  apa: 'Antić, T., Džuklevski, A., Fiala, J., Kratochvíl, J., Liotta, G., Saghafian,
    M., … Zink, J. (2026). Edge-constrained Hamiltonian paths on a point set. In <i>51st
    International Conference on Current Trends in Theory and Practice of Computer
    Science</i> (Vol. 16448, pp. 532–546). Krakow, Poland: Springer Nature. <a href="https://doi.org/10.1007/978-3-032-17801-5_39">https://doi.org/10.1007/978-3-032-17801-5_39</a>'
  chicago: Antić, Todor, Aleksa Džuklevski, Jiří Fiala, Jan Kratochvíl, Giuseppe Liotta,
    Morteza Saghafian, Maria Saumell, and Johannes Zink. “Edge-Constrained Hamiltonian
    Paths on a Point Set.” In <i>51st International Conference on Current Trends in
    Theory and Practice of Computer Science</i>, 16448:532–46. Springer Nature, 2026.
    <a href="https://doi.org/10.1007/978-3-032-17801-5_39">https://doi.org/10.1007/978-3-032-17801-5_39</a>.
  ieee: T. Antić <i>et al.</i>, “Edge-constrained Hamiltonian paths on a point set,”
    in <i>51st International Conference on Current Trends in Theory and Practice of
    Computer Science</i>, Krakow, Poland, 2026, vol. 16448, pp. 532–546.
  ista: 'Antić T, Džuklevski A, Fiala J, Kratochvíl J, Liotta G, Saghafian M, Saumell
    M, Zink J. 2026. Edge-constrained Hamiltonian paths on a point set. 51st International
    Conference on Current Trends in Theory and Practice of Computer Science. SOFSEM:
    Conference on Current Trends in Theory and Practice of Computer Science, LNCS,
    vol. 16448, 532–546.'
  mla: Antić, Todor, et al. “Edge-Constrained Hamiltonian Paths on a Point Set.” <i>51st
    International Conference on Current Trends in Theory and Practice of Computer
    Science</i>, vol. 16448, Springer Nature, 2026, pp. 532–46, doi:<a href="https://doi.org/10.1007/978-3-032-17801-5_39">10.1007/978-3-032-17801-5_39</a>.
  short: T. Antić, A. Džuklevski, J. Fiala, J. Kratochvíl, G. Liotta, M. Saghafian,
    M. Saumell, J. Zink, in:, 51st International Conference on Current Trends in Theory
    and Practice of Computer Science, Springer Nature, 2026, pp. 532–546.
conference:
  end_date: 2026-02-13
  location: Krakow, Poland
  name: 'SOFSEM: Conference on Current Trends in Theory and Practice of Computer Science'
  start_date: 2026-02-09
date_created: 2026-03-01T23:01:40Z
date_published: 2026-02-13T00:00:00Z
date_updated: 2026-03-02T08:49:20Z
day: '13'
department:
- _id: HeEd
doi: 10.1007/978-3-032-17801-5_39
external_id:
  arxiv:
  - '2511.22526'
intvolume: '     16448'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2511.22526
month: '02'
oa: 1
oa_version: Preprint
page: 532-546
publication: 51st International Conference on Current Trends in Theory and Practice
  of Computer Science
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783032178008'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Edge-constrained Hamiltonian paths on a point set
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16448
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
_id: '21379'
abstract:
- lang: eng
  text: We study a (1 + 1)-dimensional semi-discrete random variational problem that
    can be interpreted as the geometrically linearized version of the critical 2-dimensional
    random field Ising model. The scaling of the correlation length of the latter
    was recently characterized in Probab. Duke Math. J. 172(9), 1781–1811 (2023) and
    arXiv:2011.08768v3, (2022); our analysis is reminiscent of the multi-scale approach
    of the latter work and of Combinatorica 9, 161–187 (1989) . We show that at every
    dyadic scale from the system size down to the lattice spacing the minimizer contains
    at most order-one Dirichlet energy per unit length. We also establish a quenched
    homogenization result in the sense that the leading order of the minimal energy
    becomes deterministic as the ratio system size / lattice spacing diverges. To
    this purpose we adapt arguments from arXiv:2401.06768, (2024) on the (d + 1)-dimensional
    version our the model, with a Brownian replacing the white noise potential, to
    obtain the initial large-scale bounds. Based on our estimate of the (p = 3)-Dirichlet
    energy, we give an informal justification of the geometric linearization. Our
    bounds, which are oblivious to the microscopic cut-off scale provided by the lattice
    spacing, yield tightness of the law of minimizers in the space of continuous functions
    as the lattice spacing is sent to zero.
acknowledgement: FO and CW thank Ron Peled for insightful discussions on the white-noise
  multi-dimensional case in the Fall of 2023. CW thanks Barbara Dembin for the discussion
  during a workshop in Spring 2025. The work was done while the authors were affiliated
  with the Max Planck Institute for Mathematics in the Sciences; CW thanks the MPI
  for the support and warm hospitality. Open access funding provided by Institute
  of Science and Technology (IST Austria).
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Felix
  full_name: Otto, Felix
  last_name: Otto
- first_name: Matteo
  full_name: Palmieri, Matteo
  last_name: Palmieri
- first_name: Christian
  full_name: Wagner, Christian
  id: bf0c729b-2619-11f0-8024-9d69bb2b8b20
  last_name: Wagner
citation:
  ama: Otto F, Palmieri M, Wagner C. On minimizing curves in a Brownian potential.
    <i>Probability Theory and Related Fields</i>. 2026. doi:<a href="https://doi.org/10.1007/s00440-026-01468-y">10.1007/s00440-026-01468-y</a>
  apa: Otto, F., Palmieri, M., &#38; Wagner, C. (2026). On minimizing curves in a
    Brownian potential. <i>Probability Theory and Related Fields</i>. Springer Nature.
    <a href="https://doi.org/10.1007/s00440-026-01468-y">https://doi.org/10.1007/s00440-026-01468-y</a>
  chicago: Otto, Felix, Matteo Palmieri, and Christian Wagner. “On Minimizing Curves
    in a Brownian Potential.” <i>Probability Theory and Related Fields</i>. Springer
    Nature, 2026. <a href="https://doi.org/10.1007/s00440-026-01468-y">https://doi.org/10.1007/s00440-026-01468-y</a>.
  ieee: F. Otto, M. Palmieri, and C. Wagner, “On minimizing curves in a Brownian potential,”
    <i>Probability Theory and Related Fields</i>. Springer Nature, 2026.
  ista: Otto F, Palmieri M, Wagner C. 2026. On minimizing curves in a Brownian potential.
    Probability Theory and Related Fields.
  mla: Otto, Felix, et al. “On Minimizing Curves in a Brownian Potential.” <i>Probability
    Theory and Related Fields</i>, Springer Nature, 2026, doi:<a href="https://doi.org/10.1007/s00440-026-01468-y">10.1007/s00440-026-01468-y</a>.
  short: F. Otto, M. Palmieri, C. Wagner, Probability Theory and Related Fields (2026).
corr_author: '1'
date_created: 2026-03-02T10:05:23Z
date_published: 2026-02-14T00:00:00Z
date_updated: 2026-03-02T15:15:13Z
day: '14'
ddc:
- '510'
department:
- _id: JuFi
doi: 10.1007/s00440-026-01468-y
has_accepted_license: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1007/s00440-026-01468-y
month: '02'
oa: 1
oa_version: Published Version
publication: Probability Theory and Related Fields
publication_identifier:
  eissn:
  - 1432-2064
  issn:
  - 0178-8051
publication_status: epub_ahead
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: On minimizing curves in a Brownian potential
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: diamond
_id: '21380'
abstract:
- lang: eng
  text: "Context. Extreme emission line galaxies (EELGs) are believed to significantly
    contribute to the star formation activity and mass assembly in galaxies. EELGs
    likely also play a leading role in the cosmic re-ionization as their interstellar
    medium may allow a significant fraction of their ionizing photons to escape (>
    5%). Finding low-redshift analogues of these high-z galaxies is therefore essential
    to characterizing the physical conditions in the interstellar medium of these
    galaxies and understanding the processes that re-ionized the Universe.\r\n\r\nAims.
    We aimed to develop a robust and efficient method for the photometric identification
    of EELGs using the J-PAS survey. J-PAS will cover approximately 8500 deg2 of the
    sky with 54 narrow-band filters in the optical range plus i-SDSS, enabling detailed
    studies of the physical properties of these galaxies. In this work we focused
    on an initial subset of the survey: a 30 square degree area with complete observations
    in all bands.\r\n\r\nMethods. We combine equivalent width (EW) measurements from
    J-PAS narrow-band photometry with artificial intelligence techniques to identify
    galaxies with emission lines exceeding 300 Å. We validated our selection using
    spectroscopic data from DESI DR1 and characterized the selected sample through
    spectral energy distribution fitting with CIGALE.\r\n\r\nResults. We identify
    917 EELGs up to z = 0.8 over 30 deg2, achieving a purity of 95% and a completeness
    of 96% for i-SDSS < 22.5 mag. Importantly, active galactic nucleus contamination
    was carefully considered and is estimated to be around 5%. Furthermore, a cross-match
    with DESI yielded 79 counterparts; their redshifts are in excellent agreement
    with our photometric estimates, thereby confirming the reliability of our redshift
    determination. In addition, the derived emission line fluxes are in good agreement
    with spectroscopic measurements. Moreover, the selected sample reveals strong
    correlations between the ionizing photon production efficiency (ξion) and EW(Hβ),
    which are consistent with previous observational studies at low and high redshifts
    and theoretical expectations. Finally, most of the sources surpass the ionizing
    efficiency threshold required for re-ionization, highlighting their relevance
    as local analogues of early-Universe galaxies."
acknowledgement: "We thank the referee for several helpful suggestions. AGA, MGO and
  IM acknowledge financial support from the Severo Ochoa grant CEX2021-001131-S, funded
  by MICIU/AEI/10.13039/501100011033. AGA also acknowledges FPI support under grant
  code CEX2021-001131-S20-7. Both AGA and MGO acknowledge support from the research
  grant\r\nPID2022-136598NB-C32 (“Estallidos8”). MGO also acknowledges the support
  by the project ref. AST22_00001_Subp_11 funded from the EU – NextGenerationEU. RA
  acknowledges support from PID2023-147386NB-I00 funded by MICIU/AEI/10.13039/501100011033
  and ERDF/EU. IM acknowledges support from PID2022-140871NB-C21 funded by MICIU/AEI/10.13039/501100011033
  and FEDER/UE. RGD acknowledge financial support from the project PID2022-141755NB-I00,
  and the Severo Ochoa grant CEX2021-001131-S funded\r\nby MICIU/AEI/ 10.13039/501100011033.
  JAFO and AE acknowledge support from the Spanish Ministry of Science and Innovation
  and the EU–NextGenerationEU through the RRF project ICTS-MRR-2021-03-CEFCA. AHC
  and ALC acknowledge support from MCIN/AEI/10.13039/501100011033, “ERDF A way of
  making Europe”, and “EU NextGenerationEU/PRTR” through PID2021-124918NB-C44 and
  CNS2023-145339, as well as from the RRF project ICTS-MRR-2021-03-CEFCA ALC and RPT
  acknowledge the financial\r\nsupport from the European Union – NextGenerationEU
  through the RRF program Planes Complementarios con las CCAA de Astrofísica y Física
  de Altas Energías – LA4. I.B. acknowledges support from the EU Horizon 2020 programme
  (Marie Sklodowska-Curie Grant 101059532) and the Franziska Seidl Funding Program,
  University of Vienna. This paper has gone through internal‘ review by the J-PAS
  collaboration. Based on observations made with the\r\nJST/T250 telescope and JPCam
  at the Observatorio Astrofísico de Javalambre (OAJ), in Teruel, owned, managed,
  and operated by the Centro de Estudios de Física del Cosmos de Aragón (CEFCA). We
  acknowledge the OAJ Data Processing and Archiving Unit (UPAD) for reducing and calibrating
  the OAJ data used in this work. Funding for the J-PAS Project has been provided
  by the Governments of Spain and Aragón through the Fondo de Inversiones de Teruel;
  the Aragonese Government through the Research Groups E96, E103, E16_17R, E16_20R,
  and E16_23R; the Spanish Ministry of Science and Innovation (MCIN/AEI/10.13039/501100011033
  y FEDER, Una manera de hacer Europa) with grants PID2021-124918NB-C41, PID2021-124918NB-C42,
  PID2021-124918NA-C43, and PID2021-124918NB-C44; the Spanish Ministry\r\nof Science,
  Innovation and Universities (MCIU/AEI/FEDER, UE) with grants\r\nPGC2018-097585-B-C21
  and PGC2018-097585-B-C22; the Spanish Ministry of Economy and Competitiveness (MINECO)
  under AYA2015-66211-C2-1-P, AYA2015-66211-C2-2, and AYA2012-30789; and European
  FEDER funding (FCDD10-4E-867, FCDD13-4E-2685)."
article_number: A261
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: A.
  full_name: Giménez-Alcázar, A.
  last_name: Giménez-Alcázar
- first_name: R.
  full_name: Amorín, R.
  last_name: Amorín
- first_name: J. M.
  full_name: Vílchez, J. M.
  last_name: Vílchez
- first_name: A.
  full_name: Hernán-Caballero, A.
  last_name: Hernán-Caballero
- first_name: M.
  full_name: González-Otero, M.
  last_name: González-Otero
- first_name: A.
  full_name: Arroyo-Polonio, A.
  last_name: Arroyo-Polonio
- first_name: J.
  full_name: Iglesias-Páramo, J.
  last_name: Iglesias-Páramo
- first_name: A.
  full_name: Lumbreras-Calle, A.
  last_name: Lumbreras-Calle
- first_name: J. A.
  full_name: Fernández-Ontiveros, J. A.
  last_name: Fernández-Ontiveros
- first_name: C.
  full_name: López-Sanjuan, C.
  last_name: López-Sanjuan
- first_name: L.
  full_name: Bonatto, L.
  last_name: Bonatto
- first_name: R. M.
  full_name: González Delgado, R. M.
  last_name: González Delgado
- first_name: C.
  full_name: Kehrig, C.
  last_name: Kehrig
- first_name: Alberto
  full_name: Torralba Torregrosa, Alberto
  id: 018f0249-0e87-11f0-b167-cbce08fbd541
  last_name: Torralba Torregrosa
  orcid: 0000-0001-5586-6950
- first_name: P. T.
  full_name: Rahna, P. T.
  last_name: Rahna
- first_name: Y.
  full_name: Jiménez-Teja, Y.
  last_name: Jiménez-Teja
- first_name: I.
  full_name: Márquez, I.
  last_name: Márquez
- first_name: I.
  full_name: Breda, I.
  last_name: Breda
- first_name: A.
  full_name: Álvarez-Candal, A.
  last_name: Álvarez-Candal
- first_name: R.
  full_name: Abramo, R.
  last_name: Abramo
- first_name: J.
  full_name: Alcaniz, J.
  last_name: Alcaniz
- first_name: N.
  full_name: Benitez, N.
  last_name: Benitez
- first_name: S.
  full_name: Bonoli, S.
  last_name: Bonoli
- first_name: S.
  full_name: Carneiro, S.
  last_name: Carneiro
- first_name: J.
  full_name: Cenarro, J.
  last_name: Cenarro
- first_name: D.
  full_name: Cristóbal-Hornillos, D.
  last_name: Cristóbal-Hornillos
- first_name: R.
  full_name: Dupke, R.
  last_name: Dupke
- first_name: A.
  full_name: Ederoclite, A.
  last_name: Ederoclite
- first_name: C.
  full_name: Hernández-Monteagudo, C.
  last_name: Hernández-Monteagudo
- first_name: A.
  full_name: Marín-Franch, A.
  last_name: Marín-Franch
- first_name: C.
  full_name: Mendes de Oliveira, C.
  last_name: Mendes de Oliveira
- first_name: M.
  full_name: Moles, M.
  last_name: Moles
- first_name: L.
  full_name: Sodré, L.
  last_name: Sodré
- first_name: K.
  full_name: Taylor, K.
  last_name: Taylor
- first_name: J.
  full_name: Varela, J.
  last_name: Varela
- first_name: H.
  full_name: Vázquez Ramió, H.
  last_name: Vázquez Ramió
citation:
  ama: 'Giménez-Alcázar A, Amorín R, Vílchez JM, et al. J-PAS: First identification,
    physical properties, and ionization efficiency of extreme emission line galaxies.
    <i>Astronomy &#38; Astrophysics</i>. 2026;706. doi:<a href="https://doi.org/10.1051/0004-6361/202557358">10.1051/0004-6361/202557358</a>'
  apa: 'Giménez-Alcázar, A., Amorín, R., Vílchez, J. M., Hernán-Caballero, A., González-Otero,
    M., Arroyo-Polonio, A., … Vázquez Ramió, H. (2026). J-PAS: First identification,
    physical properties, and ionization efficiency of extreme emission line galaxies.
    <i>Astronomy &#38; Astrophysics</i>. EDP Sciences. <a href="https://doi.org/10.1051/0004-6361/202557358">https://doi.org/10.1051/0004-6361/202557358</a>'
  chicago: 'Giménez-Alcázar, A., R. Amorín, J. M. Vílchez, A. Hernán-Caballero, M.
    González-Otero, A. Arroyo-Polonio, J. Iglesias-Páramo, et al. “J-PAS: First Identification,
    Physical Properties, and Ionization Efficiency of Extreme Emission Line Galaxies.”
    <i>Astronomy &#38; Astrophysics</i>. EDP Sciences, 2026. <a href="https://doi.org/10.1051/0004-6361/202557358">https://doi.org/10.1051/0004-6361/202557358</a>.'
  ieee: 'A. Giménez-Alcázar <i>et al.</i>, “J-PAS: First identification, physical
    properties, and ionization efficiency of extreme emission line galaxies,” <i>Astronomy
    &#38; Astrophysics</i>, vol. 706. EDP Sciences, 2026.'
  ista: 'Giménez-Alcázar A, Amorín R, Vílchez JM, Hernán-Caballero A, González-Otero
    M, Arroyo-Polonio A, Iglesias-Páramo J, Lumbreras-Calle A, Fernández-Ontiveros
    JA, López-Sanjuan C, Bonatto L, González Delgado RM, Kehrig C, Torralba Torregrosa
    A, Rahna PT, Jiménez-Teja Y, Márquez I, Breda I, Álvarez-Candal A, Abramo R, Alcaniz
    J, Benitez N, Bonoli S, Carneiro S, Cenarro J, Cristóbal-Hornillos D, Dupke R,
    Ederoclite A, Hernández-Monteagudo C, Marín-Franch A, Mendes de Oliveira C, Moles
    M, Sodré L, Taylor K, Varela J, Vázquez Ramió H. 2026. J-PAS: First identification,
    physical properties, and ionization efficiency of extreme emission line galaxies.
    Astronomy &#38; Astrophysics. 706, A261.'
  mla: 'Giménez-Alcázar, A., et al. “J-PAS: First Identification, Physical Properties,
    and Ionization Efficiency of Extreme Emission Line Galaxies.” <i>Astronomy &#38;
    Astrophysics</i>, vol. 706, A261, EDP Sciences, 2026, doi:<a href="https://doi.org/10.1051/0004-6361/202557358">10.1051/0004-6361/202557358</a>.'
  short: A. Giménez-Alcázar, R. Amorín, J.M. Vílchez, A. Hernán-Caballero, M. González-Otero,
    A. Arroyo-Polonio, J. Iglesias-Páramo, A. Lumbreras-Calle, J.A. Fernández-Ontiveros,
    C. López-Sanjuan, L. Bonatto, R.M. González Delgado, C. Kehrig, A. Torralba Torregrosa,
    P.T. Rahna, Y. Jiménez-Teja, I. Márquez, I. Breda, A. Álvarez-Candal, R. Abramo,
    J. Alcaniz, N. Benitez, S. Bonoli, S. Carneiro, J. Cenarro, D. Cristóbal-Hornillos,
    R. Dupke, A. Ederoclite, C. Hernández-Monteagudo, A. Marín-Franch, C. Mendes de
    Oliveira, M. Moles, L. Sodré, K. Taylor, J. Varela, H. Vázquez Ramió, Astronomy
    &#38; Astrophysics 706 (2026).
date_created: 2026-03-02T10:06:10Z
date_published: 2026-02-01T00:00:00Z
date_updated: 2026-03-02T15:10:27Z
day: '01'
ddc:
- '520'
department:
- _id: JoMa
doi: 10.1051/0004-6361/202557358
external_id:
  arxiv:
  - '2512.08484'
file:
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  checksum: cd25a05386ab5638ae5baf8add0ecbee
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  creator: dernst
  date_created: 2026-03-02T14:51:57Z
  date_updated: 2026-03-02T14:51:57Z
  file_id: '21391'
  file_name: 2026_AstronomyAstrophysics_GimenezAlcazar.pdf
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file_date_updated: 2026-03-02T14:51:57Z
has_accepted_license: '1'
intvolume: '       706'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
publication: Astronomy & Astrophysics
publication_identifier:
  eissn:
  - 1432-0746
  issn:
  - 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'J-PAS: First identification, physical properties, and ionization efficiency
  of extreme emission line galaxies'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 706
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21382'
abstract:
- lang: eng
  text: The exceptional energy-harvesting efficiency of lead-halide perovskites arises
    from unusually long photocarrier diffusion lengths and recombination lifetimes
    that persist even in defect-rich, solution-grown samples. Paradoxically, perovskites
    are also known for having very short exciton decay times. Here, we resolve this
    apparent contradiction by showing that key optoelectronic properties of perovskites
    can be explained by localized flexoelectric polarization confined to interfaces
    between domains of spontaneous strain. Using birefringence imaging, electrochemical
    staining, and zero-bias photocurrent measurements, we visualize the domain structure
    and directly probe the associated internal fields in nominally cubic single crystals
    of methylammonium lead bromide. We demonstrate that localized flexoelectric fields
    spatially separate electrons and holes to opposite sides of domain walls, exponentially
    suppressing recombination. Domain walls thus act as efficient mesoscopic transport
    channels for long-lived photocarriers, microscopically linking structural heterogeneity
    to charge transport and offering mechanistically informed design principles for
    perovskite solar-energy technologies.
acknowledged_ssus:
- _id: Bio
- _id: M-Shop
acknowledgement: We are grateful to A. G. Volosniev for the valuable discussions.
  We thank D. Milius for the assistance with microscopy. D. R. would like to thank
  F. Filakovský and T. Čuchráč for the valuable discussions. This research was supported
  by the Scientific Service Units (SSU) of ISTA through resources provided by the
  Imaging & Optics Facility (IOF) and the Miba Machine Shop Facility (MS).
article_number: '946'
article_processing_charge: Yes
article_type: original
author:
- first_name: Dmytro
  full_name: Rak, Dmytro
  id: 70313b46-47c2-11ec-9e88-cd79101918fe
  last_name: Rak
- first_name: Dusan
  full_name: Lorenc, Dusan
  id: 40D8A3E6-F248-11E8-B48F-1D18A9856A87
  last_name: Lorenc
- first_name: Daniel
  full_name: Balazs, Daniel
  id: 302BADF6-85FC-11EA-9E3B-B9493DDC885E
  last_name: Balazs
  orcid: 0000-0001-7597-043X
- first_name: Ayan A.
  full_name: Zhumekenov, Ayan A.
  last_name: Zhumekenov
- first_name: Osman M.
  full_name: Bakr, Osman M.
  last_name: Bakr
- first_name: Zhanybek
  full_name: Alpichshev, Zhanybek
  id: 45E67A2A-F248-11E8-B48F-1D18A9856A87
  last_name: Alpichshev
  orcid: 0000-0002-7183-5203
citation:
  ama: Rak D, Lorenc D, Balazs D, Zhumekenov AA, Bakr OM, Alpichshev Z. Flexoelectric
    domain walls enable charge separation and transport in cubic perovskites. <i>Nature
    Communications</i>. 2026;17. doi:<a href="https://doi.org/10.1038/s41467-026-68660-5">10.1038/s41467-026-68660-5</a>
  apa: Rak, D., Lorenc, D., Balazs, D., Zhumekenov, A. A., Bakr, O. M., &#38; Alpichshev,
    Z. (2026). Flexoelectric domain walls enable charge separation and transport in
    cubic perovskites. <i>Nature Communications</i>. Springer Nature. <a href="https://doi.org/10.1038/s41467-026-68660-5">https://doi.org/10.1038/s41467-026-68660-5</a>
  chicago: Rak, Dmytro, Dusan Lorenc, Daniel Balazs, Ayan A. Zhumekenov, Osman M.
    Bakr, and Zhanybek Alpichshev. “Flexoelectric Domain Walls Enable Charge Separation
    and Transport in Cubic Perovskites.” <i>Nature Communications</i>. Springer Nature,
    2026. <a href="https://doi.org/10.1038/s41467-026-68660-5">https://doi.org/10.1038/s41467-026-68660-5</a>.
  ieee: D. Rak, D. Lorenc, D. Balazs, A. A. Zhumekenov, O. M. Bakr, and Z. Alpichshev,
    “Flexoelectric domain walls enable charge separation and transport in cubic perovskites,”
    <i>Nature Communications</i>, vol. 17. Springer Nature, 2026.
  ista: Rak D, Lorenc D, Balazs D, Zhumekenov AA, Bakr OM, Alpichshev Z. 2026. Flexoelectric
    domain walls enable charge separation and transport in cubic perovskites. Nature
    Communications. 17, 946.
  mla: Rak, Dmytro, et al. “Flexoelectric Domain Walls Enable Charge Separation and
    Transport in Cubic Perovskites.” <i>Nature Communications</i>, vol. 17, 946, Springer
    Nature, 2026, doi:<a href="https://doi.org/10.1038/s41467-026-68660-5">10.1038/s41467-026-68660-5</a>.
  short: D. Rak, D. Lorenc, D. Balazs, A.A. Zhumekenov, O.M. Bakr, Z. Alpichshev,
    Nature Communications 17 (2026).
corr_author: '1'
date_created: 2026-03-02T10:06:58Z
date_published: 2026-02-16T00:00:00Z
date_updated: 2026-04-28T12:12:46Z
day: '16'
ddc:
- '530'
department:
- _id: ZhAl
- _id: LifeSc
doi: 10.1038/s41467-026-68660-5
external_id:
  pmid:
  - '41698893'
file:
- access_level: open_access
  checksum: dd7a98de892d0b5abefca7e290ca0f77
  content_type: application/pdf
  creator: dernst
  date_created: 2026-03-02T14:27:56Z
  date_updated: 2026-03-02T14:27:56Z
  file_id: '21390'
  file_name: 2026_NatureComm_Rak.pdf
  file_size: 2570918
  relation: main_file
  success: 1
file_date_updated: 2026-03-02T14:27:56Z
has_accepted_license: '1'
intvolume: '        17'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nature Communications
publication_identifier:
  eissn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - description: News on ISTA website
    relation: press_release
    url: https://ista.ac.at/en/news/explaining-next-generation-solar-cells/
scopus_import: '1'
status: public
title: Flexoelectric domain walls enable charge separation and transport in cubic
  perovskites
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 17
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '21383'
abstract:
- lang: eng
  text: 'Planarian flatworms are known for their remarkable regenerative capacity;
    however, the precise intercellular communication mechanisms underlying this process
    remain unsolved. Here, we report the discovery and characterization of abundant
    extracellular vesicles (EVs) in planarians. Using imaging and molecular analysis,
    we show conservation of biogenesis, morphology, and protein composition of planarian
    EVs. Environmental stressors significantly elevate EV release, indicating that
    planarians dynamically regulate vesicle production. Functionally, planarian EVs
    mediate intercellular communication by transferring regulatory signals: We find
    that they shuttle small RNAs that effect systemic RNA interference (RNAi) throughout
    the organism. Notably, gene knockdown experiments reveal a crucial role for AGO-3,
    a member of the Argonaute family of proteins, in modulating the association of
    small interfering RNAs with EVs, linking the intracellular RNAi machinery to EV-based
    signaling. These findings highlight EVs as pivotal mediators of cell-cell communication
    in planarians, with broad implications for understanding the coordination of gene
    regulation and tissue regeneration in animals.'
acknowledgement: 'We thank all the Sánchez Alvarado lab members for inputs and discussions.
  We are grateful to the Stowers Aquatics (particularly the Planarian team), Microscopy,
  and Molecular Biology core facilities for technical contributions and method development;
  e. n. lissek and A. Fujii from Oni US and S. Wang from the University of Missouri,
  Kansas city, for assistance with dStORM imaging; and d. Alburty and A. Page from
  innovaprep for assisting with the ntA. We also thank M. Miller for the illustrations.
  This work was supported by the hhMi and Stowers institute. '
article_number: eady1461
article_processing_charge: Yes
article_type: original
author:
- first_name: Vidyanand
  full_name: Sasidharan, Vidyanand
  last_name: Sasidharan
- first_name: Laura
  full_name: Ancellotti, Laura
  last_name: Ancellotti
- first_name: Viraj
  full_name: Doddihal, Viraj
  id: 034e0824-174b-11ef-b32b-9366a0e70d1c
  last_name: Doddihal
- first_name: Carolyn
  full_name: Brewster, Carolyn
  last_name: Brewster
- first_name: Frederick
  full_name: Mann, Frederick
  last_name: Mann
- first_name: Mary Cathleen
  full_name: McKinney, Mary Cathleen
  last_name: McKinney
- first_name: Joseph
  full_name: Varberg, Joseph
  last_name: Varberg
- first_name: Eric
  full_name: Ross, Eric
  last_name: Ross
- first_name: Fengyan
  full_name: Deng, Fengyan
  last_name: Deng
- first_name: Kexi
  full_name: Yi, Kexi
  last_name: Yi
- first_name: Alejandro
  full_name: Sánchez Alvarado, Alejandro
  last_name: Sánchez Alvarado
citation:
  ama: Sasidharan V, Ancellotti L, Doddihal V, et al. Extracellular vesicles mediate
    stem cell signaling and systemic RNAi in planarians. <i>Science Advances</i>.
    2026;12(6). doi:<a href="https://doi.org/10.1126/sciadv.ady1461">10.1126/sciadv.ady1461</a>
  apa: Sasidharan, V., Ancellotti, L., Doddihal, V., Brewster, C., Mann, F., McKinney,
    M. C., … Sánchez Alvarado, A. (2026). Extracellular vesicles mediate stem cell
    signaling and systemic RNAi in planarians. <i>Science Advances</i>. American Association
    for the Advancement of Science. <a href="https://doi.org/10.1126/sciadv.ady1461">https://doi.org/10.1126/sciadv.ady1461</a>
  chicago: Sasidharan, Vidyanand, Laura Ancellotti, Viraj Doddihal, Carolyn Brewster,
    Frederick Mann, Mary Cathleen McKinney, Joseph Varberg, et al. “Extracellular
    Vesicles Mediate Stem Cell Signaling and Systemic RNAi in Planarians.” <i>Science
    Advances</i>. American Association for the Advancement of Science, 2026. <a href="https://doi.org/10.1126/sciadv.ady1461">https://doi.org/10.1126/sciadv.ady1461</a>.
  ieee: V. Sasidharan <i>et al.</i>, “Extracellular vesicles mediate stem cell signaling
    and systemic RNAi in planarians,” <i>Science Advances</i>, vol. 12, no. 6. American
    Association for the Advancement of Science, 2026.
  ista: Sasidharan V, Ancellotti L, Doddihal V, Brewster C, Mann F, McKinney MC, Varberg
    J, Ross E, Deng F, Yi K, Sánchez Alvarado A. 2026. Extracellular vesicles mediate
    stem cell signaling and systemic RNAi in planarians. Science Advances. 12(6),
    eady1461.
  mla: Sasidharan, Vidyanand, et al. “Extracellular Vesicles Mediate Stem Cell Signaling
    and Systemic RNAi in Planarians.” <i>Science Advances</i>, vol. 12, no. 6, eady1461,
    American Association for the Advancement of Science, 2026, doi:<a href="https://doi.org/10.1126/sciadv.ady1461">10.1126/sciadv.ady1461</a>.
  short: V. Sasidharan, L. Ancellotti, V. Doddihal, C. Brewster, F. Mann, M.C. McKinney,
    J. Varberg, E. Ross, F. Deng, K. Yi, A. Sánchez Alvarado, Science Advances 12
    (2026).
date_created: 2026-03-02T10:08:07Z
date_published: 2026-02-01T00:00:00Z
date_updated: 2026-03-02T14:23:22Z
day: '01'
ddc:
- '570'
department:
- _id: CaHe
doi: 10.1126/sciadv.ady1461
file:
- access_level: open_access
  checksum: fa9f6dafe3538e2d2872c098e06d1712
  content_type: application/pdf
  creator: dernst
  date_created: 2026-03-02T14:19:35Z
  date_updated: 2026-03-02T14:19:35Z
  file_id: '21389'
  file_name: 2026_ScienceAdv_Sasidharan.pdf
  file_size: 2841345
  relation: main_file
  success: 1
file_date_updated: 2026-03-02T14:19:35Z
has_accepted_license: '1'
intvolume: '        12'
issue: '6'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
publication: Science Advances
publication_identifier:
  eissn:
  - 2375-2548
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Extracellular vesicles mediate stem cell signaling and systemic RNAi in planarians
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21384'
abstract:
- lang: eng
  text: 'Cell migration in vivo is often guided by chemical signaling, i.e., chemotaxis.
    For immune cells performing chemotaxis in the organism, this process is influenced
    by the complex geometry of the tissue environment. In this study, we use a theoretical
    model of branched cell migration on a network to explore the cellular response
    to chemical gradients. The model predicts the response of a branched cell to a
    chemical gradient: how the cell reorients its internal polarity and how it navigates
    through a complex environment up a chemical gradient. We then compare the model’s
    predictions with experimental observations of neutrophils migrating to the site
    of a laser-inflicted wound in a zebrafish larva fin, and neutrophils migrating
    in vitro inside a regular lattice of pillars. We find that the model captures
    the details of the subcellular response to the chemokine gradient, as well as
    qualitative characteristics of the large-scale migration, suggesting that the
    neutrophils behave as fast cells, which explains the functionality of these immune
    cells.'
acknowledgement: "N.S.G. is the incumbent of the Lee and William Abramowitz Professorial
  Chair of Biophysics (Weizmann Institute), and acknowledges support from the Royal
  Society Wolfson Visiting Fellowship, and Human Frontier Science Program grant RGP0032/2022.
  Work by M.S., I.W., G.R. and A.G. was supported by the Leverhulme Trust (grant RPG-2021-226)
  and the European Research Council (ERC) under the Horizon 2020 program and UKRI,
  Grant agreement No.\r\nEP/Y02799X/1. M.S. and I.d.V acknowledge support by the European
  Research Council (grant ERC-SyG 101071793 to M.S). The funders had no role in study
  design, data collection and\r\nanalysis, decision to publish, or preparation of
  the manuscript."
article_number: e1013934
article_processing_charge: Yes
article_type: original
author:
- first_name: Jiayi
  full_name: Liu, Jiayi
  last_name: Liu
- first_name: Jonathan E.
  full_name: Ron, Jonathan E.
  last_name: Ron
- first_name: Giulia
  full_name: Rinaldi, Giulia
  last_name: Rinaldi
- first_name: Ivanna
  full_name: Williantarra, Ivanna
  last_name: Williantarra
- first_name: Antonios
  full_name: Georgantzoglou, Antonios
  last_name: Georgantzoglou
- first_name: Ingrid
  full_name: de Vries, Ingrid
  id: 4C7D837E-F248-11E8-B48F-1D18A9856A87
  last_name: de Vries
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
- first_name: Milka
  full_name: Sarris, Milka
  last_name: Sarris
- first_name: Nir S.
  full_name: Gov, Nir S.
  last_name: Gov
citation:
  ama: Liu J, Ron JE, Rinaldi G, et al. Modelling chemotaxis of branched cells in
    complex environments provides insights into immune cell navigation. <i>PLOS Computational
    Biology</i>. 2026;22(2). doi:<a href="https://doi.org/10.1371/journal.pcbi.1013934">10.1371/journal.pcbi.1013934</a>
  apa: Liu, J., Ron, J. E., Rinaldi, G., Williantarra, I., Georgantzoglou, A., de
    Vries, I., … Gov, N. S. (2026). Modelling chemotaxis of branched cells in complex
    environments provides insights into immune cell navigation. <i>PLOS Computational
    Biology</i>. Public Library of Science. <a href="https://doi.org/10.1371/journal.pcbi.1013934">https://doi.org/10.1371/journal.pcbi.1013934</a>
  chicago: Liu, Jiayi, Jonathan E. Ron, Giulia Rinaldi, Ivanna Williantarra, Antonios
    Georgantzoglou, Ingrid de Vries, Michael K Sixt, Milka Sarris, and Nir S. Gov.
    “Modelling Chemotaxis of Branched Cells in Complex Environments Provides Insights
    into Immune Cell Navigation.” <i>PLOS Computational Biology</i>. Public Library
    of Science, 2026. <a href="https://doi.org/10.1371/journal.pcbi.1013934">https://doi.org/10.1371/journal.pcbi.1013934</a>.
  ieee: J. Liu <i>et al.</i>, “Modelling chemotaxis of branched cells in complex environments
    provides insights into immune cell navigation,” <i>PLOS Computational Biology</i>,
    vol. 22, no. 2. Public Library of Science, 2026.
  ista: Liu J, Ron JE, Rinaldi G, Williantarra I, Georgantzoglou A, de Vries I, Sixt
    MK, Sarris M, Gov NS. 2026. Modelling chemotaxis of branched cells in complex
    environments provides insights into immune cell navigation. PLOS Computational
    Biology. 22(2), e1013934.
  mla: Liu, Jiayi, et al. “Modelling Chemotaxis of Branched Cells in Complex Environments
    Provides Insights into Immune Cell Navigation.” <i>PLOS Computational Biology</i>,
    vol. 22, no. 2, e1013934, Public Library of Science, 2026, doi:<a href="https://doi.org/10.1371/journal.pcbi.1013934">10.1371/journal.pcbi.1013934</a>.
  short: J. Liu, J.E. Ron, G. Rinaldi, I. Williantarra, A. Georgantzoglou, I. de Vries,
    M.K. Sixt, M. Sarris, N.S. Gov, PLOS Computational Biology 22 (2026).
date_created: 2026-03-02T10:08:38Z
date_published: 2026-02-03T00:00:00Z
date_updated: 2026-03-02T14:12:22Z
day: '03'
ddc:
- '570'
department:
- _id: MiSi
doi: 10.1371/journal.pcbi.1013934
external_id:
  pmid:
  - '41632822'
file:
- access_level: open_access
  checksum: 564041089e7334804ad3cade973f80b4
  content_type: application/pdf
  creator: dernst
  date_created: 2026-03-02T14:11:14Z
  date_updated: 2026-03-02T14:11:14Z
  file_id: '21388'
  file_name: 2026_PloSCompBio_.pdf
  file_size: 20688452
  relation: main_file
  success: 1
file_date_updated: 2026-03-02T14:11:14Z
has_accepted_license: '1'
intvolume: '        22'
issue: '2'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: bd91e723-d553-11ed-ba76-fe7eeb2185fd
  grant_number: '101071793'
  name: 'Pushing from within: Control of cell shape, integrity and motility by cytoskeletal
    pushing forces'
publication: PLOS Computational Biology
publication_identifier:
  eissn:
  - 1553-7358
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Modelling chemotaxis of branched cells in complex environments provides insights
  into immune cell navigation
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 22
year: '2026'
...
---
OA_place: repository
_id: '21400'
abstract:
- lang: eng
  text: This document is a blueprint for the formalization in Lean of the structural
    theory of regular matroids underlying Seymour's decomposition theorem. We present
    a modular account of regularity via totally unimodular representations, show that
    regularity is preserved under 1-, 2-, and 3-sums, and establish regularity for
    several special classes of matroids, including graphic, cographic, and the matroid
    R10. The blueprint records the logical structure of the proof, the precise dependencies
    between results, and their correspondence with Lean declarations. It is intended
    both as a guide for the ongoing formalization effort and as a human-readable reference
    for the organization of the proof.
article_processing_charge: No
arxiv: 1
author:
- first_name: Ivan
  full_name: Sergeev, Ivan
  id: ca3c9187-9a72-11ee-a009-8af825d896b0
  last_name: Sergeev
  orcid: 0009-0004-9145-8785
- first_name: Martin
  full_name: Dvorak, Martin
  id: 40ED02A8-C8B4-11E9-A9C0-453BE6697425
  last_name: Dvorak
  orcid: 0000-0001-5293-214X
- first_name: Cameron
  full_name: Rampell, Cameron
  last_name: Rampell
- first_name: Mark
  full_name: Sandey, Mark
  last_name: Sandey
- first_name: Pietro
  full_name: Monticone, Pietro
  last_name: Monticone
citation:
  ama: Sergeev I, Dvorak M, Rampell C, Sandey M, Monticone P. A blueprint for the
    formalization of Seymour’s matroid decomposition theorem. <i>arXiv</i>. doi:<a
    href="https://doi.org/10.48550/arXiv.2601.01255">10.48550/arXiv.2601.01255</a>
  apa: Sergeev, I., Dvorak, M., Rampell, C., Sandey, M., &#38; Monticone, P. (n.d.).
    A blueprint for the formalization of Seymour’s matroid decomposition theorem.
    <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2601.01255">https://doi.org/10.48550/arXiv.2601.01255</a>
  chicago: Sergeev, Ivan, Martin Dvorak, Cameron Rampell, Mark Sandey, and Pietro
    Monticone. “A Blueprint for the Formalization of Seymour’s Matroid Decomposition
    Theorem.” <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/arXiv.2601.01255">https://doi.org/10.48550/arXiv.2601.01255</a>.
  ieee: I. Sergeev, M. Dvorak, C. Rampell, M. Sandey, and P. Monticone, “A blueprint
    for the formalization of Seymour’s matroid decomposition theorem,” <i>arXiv</i>.
    .
  ista: Sergeev I, Dvorak M, Rampell C, Sandey M, Monticone P. A blueprint for the
    formalization of Seymour’s matroid decomposition theorem. arXiv, <a href="https://doi.org/10.48550/arXiv.2601.01255">10.48550/arXiv.2601.01255</a>.
  mla: Sergeev, Ivan, et al. “A Blueprint for the Formalization of Seymour’s Matroid
    Decomposition Theorem.” <i>ArXiv</i>, doi:<a href="https://doi.org/10.48550/arXiv.2601.01255">10.48550/arXiv.2601.01255</a>.
  short: I. Sergeev, M. Dvorak, C. Rampell, M. Sandey, P. Monticone, ArXiv (n.d.).
corr_author: '1'
date_created: 2026-03-04T12:09:26Z
date_published: 2026-01-03T00:00:00Z
date_updated: 2026-03-09T15:14:18Z
day: '03'
department:
- _id: GradSch
- _id: VlKo
doi: 10.48550/arXiv.2601.01255
external_id:
  arxiv:
  - '2601.01255'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2601.01255
month: '01'
oa: 1
oa_version: Preprint
page: '18'
publication: arXiv
publication_status: submitted
related_material:
  link:
  - relation: supplementary_material
    url: https://ivan-sergeyev.github.io/seymour/blueprint.pdf
status: public
title: A blueprint for the formalization of Seymour's matroid decomposition theorem
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: preprint
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2026'
...
---
OA_place: repository
_id: '21401'
abstract:
- lang: eng
  text: "Runtime verification offers scalable solutions to improve the safety and
    reliability of systems. However, systems that require verification or monitoring
    by a third party to ensure compliance with a specification might contain sensitive
    information, causing privacy concerns when usual runtime verification approaches
    are used. Privacy is compromised if protected information about the system, or
    sensitive data that is processed by the system, is revealed. In addition, revealing
    the specification being monitored may undermine the essence of third-party verification.\r\n\r\nIn
    this thesis, we propose a protocol for privacy-preserving runtime verification
    of systems against formal sequential specifications. We develop the protocol in
    two steps. In the first step, the monitor verifies whether the system satisfies
    the specification without learning anything else, though both parties are aware
    of the specification. In the second step, we extend the protocol to ensure that
    the system remains oblivious to the monitored specification, while the monitor
    learns only whether the system satisfies the specification and nothing more. Our
    protocol adapts and improves existing techniques used in cryptography, and more
    specifically, multi-party computation.\r\n\r\nThe sequential specification defines
    the observation step of the monitor, whose granularity depends on the situation
    (e.g., banks may be monitored on a daily basis). Our protocol exchanges a single
    message per observation step, after an initialization phase. This design minimizes
    communication overhead, enabling relatively lightweight privacy-preserving monitoring.
    We implement our approach for monitoring specifications described by register
    automata and evaluate it experimentally.\r\n"
acknowledgement: "This work is part of the project VAMOS, which has received funding
  from the European\r\nResearch Council (ERC) under grant agreement No. 101020093,
  and the Austrian Science\r\nFund (FWF) SFB project SpyCoDe F8502.\r\n"
alternative_title:
- ISTA Master’s Thesis
article_processing_charge: No
author:
- first_name: Mahyar
  full_name: Karimi, Mahyar
  id: 6e5417ba-5355-11ee-ae5a-94c2e510b26b
  last_name: Karimi
  orcid: 0009-0005-0820-1696
citation:
  ama: Karimi M. Privacy-preserving runtime verification. 2026. doi:<a href="https://doi.org/10.15479/AT-ISTA-21401">10.15479/AT-ISTA-21401</a>
  apa: Karimi, M. (2026). <i>Privacy-preserving runtime verification</i>. Institute
    of Science and Technology Austria. <a href="https://doi.org/10.15479/AT-ISTA-21401">https://doi.org/10.15479/AT-ISTA-21401</a>
  chicago: Karimi, Mahyar. “Privacy-Preserving Runtime Verification.” Institute of
    Science and Technology Austria, 2026. <a href="https://doi.org/10.15479/AT-ISTA-21401">https://doi.org/10.15479/AT-ISTA-21401</a>.
  ieee: M. Karimi, “Privacy-preserving runtime verification,” Institute of Science
    and Technology Austria, 2026.
  ista: Karimi M. 2026. Privacy-preserving runtime verification. Institute of Science
    and Technology Austria.
  mla: Karimi, Mahyar. <i>Privacy-Preserving Runtime Verification</i>. Institute of
    Science and Technology Austria, 2026, doi:<a href="https://doi.org/10.15479/AT-ISTA-21401">10.15479/AT-ISTA-21401</a>.
  short: M. Karimi, Privacy-Preserving Runtime Verification, Institute of Science
    and Technology Austria, 2026.
corr_author: '1'
date_created: 2026-03-05T15:20:47Z
date_published: 2026-03-05T00:00:00Z
date_updated: 2026-03-13T13:37:20Z
day: '05'
ddc:
- '000'
degree_awarded: MS
department:
- _id: GradSch
- _id: ToHe
doi: 10.15479/AT-ISTA-21401
ec_funded: 1
file:
- access_level: open_access
  checksum: 3f49f05c9d123e14d7adb73d3bc50fe2
  content_type: application/pdf
  creator: mkarimi
  date_created: 2026-03-06T14:06:25Z
  date_updated: 2026-03-10T15:20:09Z
  file_id: '21404'
  file_name: 2026_Karimi_Mahyar_Thesis.pdf
  file_size: 766048
  relation: main_file
- access_level: closed
  checksum: 8fb9db4b4187e26443369a993427a5ff
  content_type: application/zip
  creator: mkarimi
  date_created: 2026-03-06T14:06:25Z
  date_updated: 2026-03-06T14:06:25Z
  file_id: '21405'
  file_name: 2026_Karimi_Mahyar_Thesis_src.zip
  file_size: 1243394
  relation: source_file
file_date_updated: 2026-03-10T15:20:09Z
has_accepted_license: '1'
keyword:
- Privacy-preserving verification
- Runtime verification
- Monitoring
- Reactive functionalities
- Cryptographic protocols
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: '60'
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
- _id: 34a4ce89-11ca-11ed-8bc3-8cc37fb6e11f
  grant_number: F8512
  name: Security and Privacy by Design for Complex Systems
publication_identifier:
  issn:
  - 2791-4585
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '21020'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
title: Privacy-preserving runtime verification
type: dissertation
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '21407'
abstract:
- lang: eng
  text: "This note proves that only a linear number of holes in a Cech complex of
    n points in R^d\r\ncan persist over an interval of constant length. Specifically,
    for any fixed dimension p <\r\nd and fixed ε > 0, the number of p-dimensional
    holes in the ˇ Cech complex at radius 1\r\nthat persist to radius 1+ε is bounded
    above by a constant times n,where n is the number\r\nof points. The proof uses
    a packing argument supported by relating theCˇ ech complexes\r\nwith corresponding
    snap complexes over the cells in a partition of space. The argument\r\nis self-contained
    and elementary, relying on geometric and combinatorial constructions\r\nrather
    than on the existing theory of sparse approximations or interleavings. The bound\r\nalso
    applies to Alpha complexes and Vietoris–Rips complexes. While our result can be\r\ninferred
    from prior work on sparse filtrations, to our knowledge, no explicit statement\r\nor
    direct proof of this bound appears in the literature."
acknowledgement: The authors would like to thank Michael Lesnick and Primoz Skraba
  for their helpful comments regarding sparse approximations of filtrations. We are
  also grateful to the anonymous referees for their careful reading and constructive
  suggestions. The three authors are supported by the Wittgenstein Prize, Austrian
  Science Fund (FWF), grant no. Z 342-N31, by the DFG Collaborative Research Center
  TRR 109, Austrian Science Fund (FWF), grant no. I 02979-N35, the U.S. National Science
  Foundation (NSF-DMS), grant no. 2005630, and a JSPS Grant-in-Aid for Transformative
  Research Areas (A) (22H05107, Y.H.), EPSRC Research Grant EP/Y008642/1.
article_number: '5'
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Matthew
  full_name: Kahle, Matthew
  last_name: Kahle
- first_name: Shu
  full_name: Kanazawa, Shu
  last_name: Kanazawa
citation:
  ama: Edelsbrunner H, Kahle M, Kanazawa S. Maximum persistent Betti numbers of Čech
    complexes. <i>Journal of Applied and Computational Topology</i>. 2026;10. doi:<a
    href="https://doi.org/10.1007/s41468-026-00233-3">10.1007/s41468-026-00233-3</a>
  apa: Edelsbrunner, H., Kahle, M., &#38; Kanazawa, S. (2026). Maximum persistent
    Betti numbers of Čech complexes. <i>Journal of Applied and Computational Topology</i>.
    Springer Nature. <a href="https://doi.org/10.1007/s41468-026-00233-3">https://doi.org/10.1007/s41468-026-00233-3</a>
  chicago: Edelsbrunner, Herbert, Matthew Kahle, and Shu Kanazawa. “Maximum Persistent
    Betti Numbers of Čech Complexes.” <i>Journal of Applied and Computational Topology</i>.
    Springer Nature, 2026. <a href="https://doi.org/10.1007/s41468-026-00233-3">https://doi.org/10.1007/s41468-026-00233-3</a>.
  ieee: H. Edelsbrunner, M. Kahle, and S. Kanazawa, “Maximum persistent Betti numbers
    of Čech complexes,” <i>Journal of Applied and Computational Topology</i>, vol.
    10. Springer Nature, 2026.
  ista: Edelsbrunner H, Kahle M, Kanazawa S. 2026. Maximum persistent Betti numbers
    of Čech complexes. Journal of Applied and Computational Topology. 10, 5.
  mla: Edelsbrunner, Herbert, et al. “Maximum Persistent Betti Numbers of Čech Complexes.”
    <i>Journal of Applied and Computational Topology</i>, vol. 10, 5, Springer Nature,
    2026, doi:<a href="https://doi.org/10.1007/s41468-026-00233-3">10.1007/s41468-026-00233-3</a>.
  short: H. Edelsbrunner, M. Kahle, S. Kanazawa, Journal of Applied and Computational
    Topology 10 (2026).
date_created: 2026-03-08T23:01:45Z
date_published: 2026-03-01T00:00:00Z
date_updated: 2026-03-09T11:31:29Z
day: '01'
ddc:
- '500'
department:
- _id: HeEd
doi: 10.1007/s41468-026-00233-3
external_id:
  arxiv:
  - '2409.05241'
file:
- access_level: open_access
  checksum: 0bf6dc430cafa40c08f260fe17d54595
  content_type: application/pdf
  creator: dernst
  date_created: 2026-03-09T11:29:30Z
  date_updated: 2026-03-09T11:29:30Z
  file_id: '21416'
  file_name: 2026_JourAppliedCompTopology_Edelsbrunner.pdf
  file_size: 323111
  relation: main_file
  success: 1
file_date_updated: 2026-03-09T11:29:30Z
has_accepted_license: '1'
intvolume: '        10'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: 268116B8-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00342
  name: Mathematics, Computer Science
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
publication: Journal of Applied and Computational Topology
publication_identifier:
  eissn:
  - 2367-1734
  issn:
  - 2367-1726
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Maximum persistent Betti numbers of Čech complexes
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 10
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
_id: '21408'
abstract:
- lang: eng
  text: Rational design strategies for self-assembly require a detailed understanding
    of both the equilibrium state and the assembly kinetics. While the former is starting
    to be well understood, the latter remains a major theoretical challenge, especially
    in programmable systems and the so-called semi-addressable regime, where binding
    is often nondeterministic and the formation of off-target structures negatively
    influences the assembly. Here, we show that it is possible to simultaneously sculpt
    the assembly outcome and the assembly kinetics through the underexplored design
    space of binding energies and particle concentrations. By formulating the assembly
    process as a complex reaction network, we calculate and optimize the tradeoff
    between assembly speed and quality and show that parameter optimization can speed
    up assembly by many orders of magnitude without lowering the yield of the target
    structure. Although the exact speedup varies from design to design, we find the
    largest speedups for nondeterministic systems where unoptimized assembly is the
    slowest, sometimes even making them assemble faster than optimized, fully addressable
    designs. Therefore, these results not only solve a key challenge in semi-addressable
    self-assembly but further emphasize the utility of semi-addressability, where
    designs have the potential to be faster as well as cheaper (fewer particle species)
    and better (higher yield). More broadly, our results highlight the importance
    of parameter optimization in programmable self-assembly and provide practical
    tools for simultaneous optimization of kinetics and yield in a wide range of systems.
acknowledgement: The research was supported by the Gesellschaft für Forschungsförderung
  Niederösterreich under Project No. FTI23-G-011.
article_number: '084904'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Maximilian
  full_name: Hübl, Maximilian
  id: 5eb8629e-15b2-11ec-abd3-e6f3e5e01f32
  last_name: Hübl
- first_name: Carl Peter
  full_name: Goodrich, Carl Peter
  id: EB352CD2-F68A-11E9-89C5-A432E6697425
  last_name: Goodrich
  orcid: 0000-0002-1307-5074
citation:
  ama: Hübl M, Goodrich CP. Simultaneous optimization of assembly time and yield in
    programmable self-assembly. <i>Journal of Chemical Physics</i>. 2026;164(8). doi:<a
    href="https://doi.org/10.1063/5.0304731">10.1063/5.0304731</a>
  apa: Hübl, M., &#38; Goodrich, C. P. (2026). Simultaneous optimization of assembly
    time and yield in programmable self-assembly. <i>Journal of Chemical Physics</i>.
    AIP Publishing. <a href="https://doi.org/10.1063/5.0304731">https://doi.org/10.1063/5.0304731</a>
  chicago: Hübl, Maximilian, and Carl Peter Goodrich. “Simultaneous Optimization of
    Assembly Time and Yield in Programmable Self-Assembly.” <i>Journal of Chemical
    Physics</i>. AIP Publishing, 2026. <a href="https://doi.org/10.1063/5.0304731">https://doi.org/10.1063/5.0304731</a>.
  ieee: M. Hübl and C. P. Goodrich, “Simultaneous optimization of assembly time and
    yield in programmable self-assembly,” <i>Journal of Chemical Physics</i>, vol.
    164, no. 8. AIP Publishing, 2026.
  ista: Hübl M, Goodrich CP. 2026. Simultaneous optimization of assembly time and
    yield in programmable self-assembly. Journal of Chemical Physics. 164(8), 084904.
  mla: Hübl, Maximilian, and Carl Peter Goodrich. “Simultaneous Optimization of Assembly
    Time and Yield in Programmable Self-Assembly.” <i>Journal of Chemical Physics</i>,
    vol. 164, no. 8, 084904, AIP Publishing, 2026, doi:<a href="https://doi.org/10.1063/5.0304731">10.1063/5.0304731</a>.
  short: M. Hübl, C.P. Goodrich, Journal of Chemical Physics 164 (2026).
corr_author: '1'
date_created: 2026-03-08T23:01:45Z
date_published: 2026-02-28T00:00:00Z
date_updated: 2026-03-09T10:40:41Z
day: '28'
ddc:
- '540'
department:
- _id: CaGo
- _id: GradSch
doi: 10.1063/5.0304731
external_id:
  arxiv:
  - '2510.07876'
file:
- access_level: open_access
  checksum: 9bdb8870930e83edb973408da3038559
  content_type: application/pdf
  creator: dernst
  date_created: 2026-03-09T10:38:55Z
  date_updated: 2026-03-09T10:38:55Z
  file_id: '21415'
  file_name: 2026_JourChemPhysics_Huebl.pdf
  file_size: 6903766
  relation: main_file
  success: 1
file_date_updated: 2026-03-09T10:38:55Z
has_accepted_license: '1'
intvolume: '       164'
issue: '8'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
project:
- _id: 8dd93da8-16d5-11f0-9cad-d2c70200d9a5
  grant_number: FTI23-G-011
  name: Dynamically reconfigurable self-assembly with triangular DNA-origami bricks
publication: Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
  issn:
  - 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Simultaneous optimization of assembly time and yield in programmable self-assembly
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 164
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21409'
abstract:
- lang: eng
  text: Meiotic drivers are selfish genetic elements that gain transmission advantages
    by distorting equal, Mendelian segregation. For decades, biologists have considered
    meiotic drivers as interesting, albeit esoteric, case studies. It is now clear,
    however, that meiotic drive is more common and phylogenetically widespread than
    previously supposed. Indeed, intensive study of a few well-known cases has begun
    to reveal the evolutionary genomic consequences of meiotic drive. We argue here
    that many features of genome evolution, content, and organization that are seemingly
    inexplicable by organismal adaptation or nearly neutral processes are instead
    best accounted for by recurrent histories of meiotic drive. We review how meiotic
    drive can affect the evolution of sequences, gene copy numbers, genes with functions
    in meiosis and gametogenesis, signatures of “selection,” chromosome rearrangements,
    and karyotype evolution. We also explore the interactions of meiotic drive elements
    with other classes of selfish genetic elements, including satellite DNAs, transposable
    elements, and with the endogenous host genes involved in drive suppression. Finally,
    we argue that some aspects of drive-mediated genome evolution are now sufficiently
    well established that we might reverse the direction of discovery—rather than
    ask how drive affects genome evolution, we can use genome data to discover new
    putative drive elements.
acknowledgement: "This review is a product of the SMBE satellite workshop and the
  SNSF Scientific Exchange on the Genomic Consequences of Meiotic Drive. We thank
  the Society for Molecular Biology and Evolution (satellite grant to A.M.L., A.K.L.,
  R.L.U., D.C.P.), the Swiss National Science Foundation (Schweizerischer Nationalfonds
  zur Förderung der Wissenschaftlichen Forschung IZSEZ0_217501 to A.K.L.), and the
  National Science Foundation Division of Molecular and Cellular Biosciences (NSF
  MCB Conference grant 2312190 to R.L.U.) for their generous support of the workshop.\r\n\r\nWe
  also thank the following for their support of individual authors: National Science
  Foundation Division of Molecular and Cellular Biosciences (NSF MCB CAREER 2047052
  to R.L.U.), Division of Environmental Biology (NSF DEB-2344468 to L.F., NSF DEB-1737824
  to K.A.D.), National Institute of General Medical Sciences (NIH R35GM119515 to A.M.L.,
  NIH R01GM148442 to D.C.P.), European Research Council (PGErepro to L.R.), Fundação
  de Amparo à Pesquisa do Estado de São Paulo (FAPESP 2020/06188-5 to A.B.S.M.F.),
  Royal Society (DHF\\R1\\180120 to L.R.), Wissenschaftskolleg zu Berlin (support
  for D.C.P.), and Vetenskapsrådet (Swedish Research Council VR grant number 2021-0429
  to A.A.V.)."
article_number: msag020
article_processing_charge: Yes
article_type: original
author:
- first_name: Daven C.
  full_name: Presgraves, Daven C.
  last_name: Presgraves
- first_name: R. Kelly
  full_name: Dawe, R. Kelly
  last_name: Dawe
- first_name: Kelly A.
  full_name: Dyer, Kelly A.
  last_name: Dyer
- first_name: Lila
  full_name: Fishman, Lila
  last_name: Fishman
- first_name: Soumitra A.
  full_name: Bhide, Soumitra A.
  last_name: Bhide
- first_name: Sasha L.
  full_name: Bradshaw, Sasha L.
  last_name: Bradshaw
- first_name: Meghan J.
  full_name: Brady, Meghan J.
  last_name: Brady
- first_name: Alejandro
  full_name: Burga, Alejandro
  last_name: Burga
- first_name: Cécile
  full_name: Courret, Cécile
  last_name: Courret
- first_name: Brandon L.
  full_name: Fagen, Brandon L.
  last_name: Fagen
- first_name: Ana Beatriz Stein
  full_name: Machado Ferretti, Ana Beatriz Stein
  last_name: Machado Ferretti
- first_name: Réka K
  full_name: Kelemen, Réka K
  id: 48D3F8DE-F248-11E8-B48F-1D18A9856A87
  last_name: Kelemen
  orcid: 0000-0002-8489-9281
- first_name: Jun
  full_name: Kitano, Jun
  last_name: Kitano
- first_name: Yiran
  full_name: Liu, Yiran
  last_name: Liu
- first_name: Emiliano
  full_name: Martí, Emiliano
  last_name: Martí
- first_name: Theresa
  full_name: Erlenbach, Theresa
  last_name: Erlenbach
- first_name: Josephine A.
  full_name: Reinhardt, Josephine A.
  last_name: Reinhardt
- first_name: Laura
  full_name: Ross, Laura
  last_name: Ross
- first_name: Jan Niklas
  full_name: Runge, Jan Niklas
  last_name: Runge
- first_name: Callie M.
  full_name: Swanepoel, Callie M.
  last_name: Swanepoel
- first_name: Beatriz
  full_name: Vicoso, Beatriz
  id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
  last_name: Vicoso
  orcid: 0000-0002-4579-8306
- first_name: Aaron A.
  full_name: Vogan, Aaron A.
  last_name: Vogan
- first_name: Anna K.
  full_name: Lindholm, Anna K.
  last_name: Lindholm
- first_name: Amanda M.
  full_name: Larracuente, Amanda M.
  last_name: Larracuente
- first_name: Robert L.
  full_name: Unckless, Robert L.
  last_name: Unckless
citation:
  ama: Presgraves DC, Dawe RK, Dyer KA, et al. The evolutionary genomics of meiotic
    drive. <i>Molecular Biology and Evolution</i>. 2026;43(2). doi:<a href="https://doi.org/10.1093/molbev/msag020">10.1093/molbev/msag020</a>
  apa: Presgraves, D. C., Dawe, R. K., Dyer, K. A., Fishman, L., Bhide, S. A., Bradshaw,
    S. L., … Unckless, R. L. (2026). The evolutionary genomics of meiotic drive. <i>Molecular
    Biology and Evolution</i>. Oxford University Press. <a href="https://doi.org/10.1093/molbev/msag020">https://doi.org/10.1093/molbev/msag020</a>
  chicago: Presgraves, Daven C., R. Kelly Dawe, Kelly A. Dyer, Lila Fishman, Soumitra
    A. Bhide, Sasha L. Bradshaw, Meghan J. Brady, et al. “The Evolutionary Genomics
    of Meiotic Drive.” <i>Molecular Biology and Evolution</i>. Oxford University Press,
    2026. <a href="https://doi.org/10.1093/molbev/msag020">https://doi.org/10.1093/molbev/msag020</a>.
  ieee: D. C. Presgraves <i>et al.</i>, “The evolutionary genomics of meiotic drive,”
    <i>Molecular Biology and Evolution</i>, vol. 43, no. 2. Oxford University Press,
    2026.
  ista: Presgraves DC, Dawe RK, Dyer KA, Fishman L, Bhide SA, Bradshaw SL, Brady MJ,
    Burga A, Courret C, Fagen BL, Machado Ferretti ABS, Kelemen RK, Kitano J, Liu
    Y, Martí E, Erlenbach T, Reinhardt JA, Ross L, Runge JN, Swanepoel CM, Vicoso
    B, Vogan AA, Lindholm AK, Larracuente AM, Unckless RL. 2026. The evolutionary
    genomics of meiotic drive. Molecular Biology and Evolution. 43(2), msag020.
  mla: Presgraves, Daven C., et al. “The Evolutionary Genomics of Meiotic Drive.”
    <i>Molecular Biology and Evolution</i>, vol. 43, no. 2, msag020, Oxford University
    Press, 2026, doi:<a href="https://doi.org/10.1093/molbev/msag020">10.1093/molbev/msag020</a>.
  short: D.C. Presgraves, R.K. Dawe, K.A. Dyer, L. Fishman, S.A. Bhide, S.L. Bradshaw,
    M.J. Brady, A. Burga, C. Courret, B.L. Fagen, A.B.S. Machado Ferretti, R.K. Kelemen,
    J. Kitano, Y. Liu, E. Martí, T. Erlenbach, J.A. Reinhardt, L. Ross, J.N. Runge,
    C.M. Swanepoel, B. Vicoso, A.A. Vogan, A.K. Lindholm, A.M. Larracuente, R.L. Unckless,
    Molecular Biology and Evolution 43 (2026).
date_created: 2026-03-08T23:01:45Z
date_published: 2026-02-02T00:00:00Z
date_updated: 2026-03-09T10:33:04Z
day: '02'
ddc:
- '570'
department:
- _id: BeVi
doi: 10.1093/molbev/msag020
external_id:
  pmid:
  - '41589062'
file:
- access_level: open_access
  checksum: 406e7cca0f2536d3bb877032fc837f9b
  content_type: application/pdf
  creator: dernst
  date_created: 2026-03-09T10:32:02Z
  date_updated: 2026-03-09T10:32:02Z
  file_id: '21414'
  file_name: 2026_MolecularBioEvolution_Presgraves.pdf
  file_size: 4533829
  relation: main_file
  success: 1
file_date_updated: 2026-03-09T10:32:02Z
has_accepted_license: '1'
intvolume: '        43'
issue: '2'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
publication: Molecular Biology and Evolution
publication_identifier:
  eissn:
  - 1537-1719
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: The evolutionary genomics of meiotic drive
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 43
year: '2026'
...
---
OA_place: repository
OA_type: green
_id: '21410'
abstract:
- lang: eng
  text: Given a finite set of red and blue points in R^d, the MST-ratio is defined
    as the total length of the Euclidean minimum spanning trees of the red points
    and the blue points, divided by the length of the Euclidean minimum spanning tree
    of their union. The MST-ratio has recently gained attention due to its direct
    interpretation in topological models for studying point sets with applications
    in spatial biology. The maximum MST-ratio of a point set is the maximum MST-ratio
    over all proper colorings of its points by red and blue. We prove that finding
    the maximum MST-ratio of a given point set is NP-hard when the dimension is part
    of the input. Moreover, we present a quadratic-time 3-approximation algorithm
    for this problem. As part of the proof, we show that in any metric space, the
    maximum MST-ratio is smaller than 3. Furthermore, we study the average MST-ratio
    over all colorings of a set of n points. We show that this average is always at
    least n-2/n-1, and for n random points uniformly distributed in a d-dimensional
    unit cube, the average tends to (math formular) in expectation as n approaches
    infinity.
acknowledgement: "A. J. Ameli—Supported by the project COALESCE (ERC grant no. 853234).\r\nM.
  Saghafian—Partially supported by the European Research Council (ERC), grant no.
  788183, and by the Wittgenstein Prize, Austrian Science Fund (FWF), grant no. Z
  342-N31."
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Afrouz
  full_name: Jabal Ameli, Afrouz
  last_name: Jabal Ameli
- first_name: Faezeh
  full_name: Motiei, Faezeh
  last_name: Motiei
- first_name: Morteza
  full_name: Saghafian, Morteza
  id: f86f7148-b140-11ec-9577-95435b8df824
  last_name: Saghafian
citation:
  ama: 'Jabal Ameli A, Motiei F, Saghafian M. On the MST-ratio: Theoretical bounds
    and complexity of finding the maximum. In: <i>20th International Conference and
    Workshops on Algorithms and Computation</i>. Vol 16444. Springer Nature; 2026:386-401.
    doi:<a href="https://doi.org/10.1007/978-981-95-7127-7_26">10.1007/978-981-95-7127-7_26</a>'
  apa: 'Jabal Ameli, A., Motiei, F., &#38; Saghafian, M. (2026). On the MST-ratio:
    Theoretical bounds and complexity of finding the maximum. In <i>20th International
    Conference and Workshops on Algorithms and Computation</i> (Vol. 16444, pp. 386–401).
    Perugia, Italy: Springer Nature. <a href="https://doi.org/10.1007/978-981-95-7127-7_26">https://doi.org/10.1007/978-981-95-7127-7_26</a>'
  chicago: 'Jabal Ameli, Afrouz, Faezeh Motiei, and Morteza Saghafian. “On the MST-Ratio:
    Theoretical Bounds and Complexity of Finding the Maximum.” In <i>20th International
    Conference and Workshops on Algorithms and Computation</i>, 16444:386–401. Springer
    Nature, 2026. <a href="https://doi.org/10.1007/978-981-95-7127-7_26">https://doi.org/10.1007/978-981-95-7127-7_26</a>.'
  ieee: 'A. Jabal Ameli, F. Motiei, and M. Saghafian, “On the MST-ratio: Theoretical
    bounds and complexity of finding the maximum,” in <i>20th International Conference
    and Workshops on Algorithms and Computation</i>, Perugia, Italy, 2026, vol. 16444,
    pp. 386–401.'
  ista: 'Jabal Ameli A, Motiei F, Saghafian M. 2026. On the MST-ratio: Theoretical
    bounds and complexity of finding the maximum. 20th International Conference and
    Workshops on Algorithms and Computation. WALCOM: International Conference and
    Workshops on Algorithms and Computation, LNCS, vol. 16444, 386–401.'
  mla: 'Jabal Ameli, Afrouz, et al. “On the MST-Ratio: Theoretical Bounds and Complexity
    of Finding the Maximum.” <i>20th International Conference and Workshops on Algorithms
    and Computation</i>, vol. 16444, Springer Nature, 2026, pp. 386–401, doi:<a href="https://doi.org/10.1007/978-981-95-7127-7_26">10.1007/978-981-95-7127-7_26</a>.'
  short: A. Jabal Ameli, F. Motiei, M. Saghafian, in:, 20th International Conference
    and Workshops on Algorithms and Computation, Springer Nature, 2026, pp. 386–401.
conference:
  end_date: 2026-03-06
  location: Perugia, Italy
  name: 'WALCOM: International Conference and Workshops on Algorithms and Computation'
  start_date: 2026-03-04
date_created: 2026-03-08T23:01:45Z
date_published: 2026-02-14T00:00:00Z
date_updated: 2026-03-09T10:25:41Z
day: '14'
department:
- _id: HeEd
doi: 10.1007/978-981-95-7127-7_26
ec_funded: 1
external_id:
  arxiv:
  - '2409.11079'
intvolume: '     16444'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2409.11079
month: '02'
oa: 1
oa_version: Preprint
page: 386-401
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 268116B8-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00342
  name: Mathematics, Computer Science
publication: 20th International Conference and Workshops on Algorithms and Computation
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9789819571260'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'On the MST-ratio: Theoretical bounds and complexity of finding the maximum'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16444
year: '2026'
...
---
OA_place: publisher
OA_type: gold
_id: '21411'
abstract:
- lang: eng
  text: "To achieve fast recovery from link failures, most modern communication networks
    feature fully\r\ndecentralized fast re-routing mechanisms. These re-routing mechanisms
    rely on pre-installed static re-routing rules at the nodes (the routers), which
    depend only on local failure information, namely on the failed links incident
    to the node. Ideally, a network is perfectly resilient: the re-routing rules ensure
    that packets are always successfully routed to their destinations as long as the
    source and the destination are still physically connected in the underlying network
    after the failures. Unfortunately, there are examples where achieving perfect
    resilience is not possible. Surprisingly, only very little is known about the
    algorithmic aspect of when and how perfect resilience can be achieved. We investigate
    the computational complexity of analyzing such local fast re-routing mechanisms.
    Our main result is a negative one: we show that even checking whether a given
    set of static re-routing rules ensures perfect resilience is coNP-complete. Additionally,
    we investigate other fundamental variations of the problem. In particular, we
    show that our coNP-completeness proof also applies to scenarios where the re-routing
    rules have specific patterns (known as skipping in the literature). On the positive
    side, for scenarios where nodes do not have information about the link from which
    a packet arrived (the so-called in-port), we present a linear-time algorithm to
    realize perfect resilience whenever possible (which we show can also be determined
    in linear time). "
acknowledgement: "Matthias Bentert: ERC Horizon 2020 research and innovation programme
  (grant agreement\r\nNo. 819416) and ERC Consolidator grant AdjustNet (agreement
  No. 864228).\r\nEsra Ceylan: German Research Foundation (DFG) project ReNO, Schwerpunktprogramm:\r\nResilienz
  in Vernetzten Welten – Beherrschen von Fehlern, Überlast, Angriffen und dem\r\nUnbekannten
  (SPP 2378).\r\nStefan Schmid: German Research Foundation (DFG) project ReNO, Schwerpunktprogramm:\r\nResilienz
  in Vernetzten Welten – Beherrschen von Fehlern, Überlast, Angriffen und dem\r\nUnbekannten
  (SPP 2378)."
alternative_title:
- LIPIcs
article_number: '31'
article_processing_charge: No
author:
- first_name: Matthias
  full_name: Bentert, Matthias
  last_name: Bentert
- first_name: Esra
  full_name: Ceylan, Esra
  last_name: Ceylan
- first_name: Valentin
  full_name: Hübner, Valentin
  id: 2c8aa207-dc7d-11ea-9b2f-f22972ecd910
  last_name: Hübner
  orcid: 0009-0001-5009-4987
- first_name: Stefan
  full_name: Schmid, Stefan
  last_name: Schmid
- first_name: Jiří
  full_name: Srba, Jiří
  last_name: Srba
citation:
  ama: 'Bentert M, Ceylan E, Hübner V, Schmid S, Srba J. Fast re-routing in networks:
    On the complexity of perfect resilience. In: <i>29th International Conference
    on Principles of Distributed Systems</i>. Vol 361. Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik; 2026. doi:<a href="https://doi.org/10.4230/LIPIcs.OPODIS.2025.31">10.4230/LIPIcs.OPODIS.2025.31</a>'
  apa: 'Bentert, M., Ceylan, E., Hübner, V., Schmid, S., &#38; Srba, J. (2026). Fast
    re-routing in networks: On the complexity of perfect resilience. In <i>29th International
    Conference on Principles of Distributed Systems</i> (Vol. 361). Iaşi, Romania:
    Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPIcs.OPODIS.2025.31">https://doi.org/10.4230/LIPIcs.OPODIS.2025.31</a>'
  chicago: 'Bentert, Matthias, Esra Ceylan, Valentin Hübner, Stefan Schmid, and Jiří
    Srba. “Fast Re-Routing in Networks: On the Complexity of Perfect Resilience.”
    In <i>29th International Conference on Principles of Distributed Systems</i>,
    Vol. 361. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026. <a href="https://doi.org/10.4230/LIPIcs.OPODIS.2025.31">https://doi.org/10.4230/LIPIcs.OPODIS.2025.31</a>.'
  ieee: 'M. Bentert, E. Ceylan, V. Hübner, S. Schmid, and J. Srba, “Fast re-routing
    in networks: On the complexity of perfect resilience,” in <i>29th International
    Conference on Principles of Distributed Systems</i>, Iaşi, Romania, 2026, vol.
    361.'
  ista: 'Bentert M, Ceylan E, Hübner V, Schmid S, Srba J. 2026. Fast re-routing in
    networks: On the complexity of perfect resilience. 29th International Conference
    on Principles of Distributed Systems. OPODIS: Conference on Principles of Distributed
    Systems, LIPIcs, vol. 361, 31.'
  mla: 'Bentert, Matthias, et al. “Fast Re-Routing in Networks: On the Complexity
    of Perfect Resilience.” <i>29th International Conference on Principles of Distributed
    Systems</i>, vol. 361, 31, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
    2026, doi:<a href="https://doi.org/10.4230/LIPIcs.OPODIS.2025.31">10.4230/LIPIcs.OPODIS.2025.31</a>.'
  short: M. Bentert, E. Ceylan, V. Hübner, S. Schmid, J. Srba, in:, 29th International
    Conference on Principles of Distributed Systems, Schloss Dagstuhl - Leibniz-Zentrum
    für Informatik, 2026.
conference:
  end_date: 2025-12-05
  location: Iaşi, Romania
  name: 'OPODIS: Conference on Principles of Distributed Systems'
  start_date: 2025-12-03
date_created: 2026-03-08T23:01:46Z
date_published: 2026-01-07T00:00:00Z
date_updated: 2026-03-09T12:36:11Z
day: '07'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.4230/LIPIcs.OPODIS.2025.31
file:
- access_level: open_access
  checksum: a7af114da7c38d2338b4edb922eb27f1
  content_type: application/pdf
  creator: dernst
  date_created: 2026-03-09T12:33:58Z
  date_updated: 2026-03-09T12:33:58Z
  file_id: '21419'
  file_name: 2026_OPODIS_Bentert.pdf
  file_size: 1041334
  relation: main_file
  success: 1
file_date_updated: 2026-03-09T12:33:58Z
has_accepted_license: '1'
intvolume: '       361'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
publication: 29th International Conference on Principles of Distributed Systems
publication_identifier:
  eissn:
  - 1868-8969
  isbn:
  - '9783959774093'
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Fast re-routing in networks: On the complexity of perfect resilience'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 361
year: '2026'
...
---
OA_place: repository
OA_type: green
_id: '21438'
abstract:
- lang: eng
  text: Antiferromagnets (AFMs) hold promise for applications in digital logic. However,
    switching AFM domains is challenging, as magnetic fields do not couple to the
    bulk antiferromagnetic order parameter. Here we show that magnetic-field-driven
    switching of AFM domains can in many cases be enabled by a generic reduction of
    magnetic exchange at surfaces. We use statistical mechanics and Monte Carlo simulations
    to demonstrate that an inequivalence in magnetic exchange between top and bottom
    surface moments, combined with the enhanced magnetic susceptibility of surface
    spins, can enable deterministic selection of antiferromagnetic domains depending
    on the magnetic-field ramping direction. We further show that this mechanism provides
    a natural interpretation for experimental observations of hysteresis in magneto-optical
    response of the van der Waals AFM $\mathrm{MnBi_2Te_4}$. Our findings highlight
    the critical role of surface spins in responses of antiferromagnets to magnetic
    fields. Furthermore, our results suggest that antiferromagnetic domain selection
    via purely magnetic means may be a more common and experimentally accessible phenomenon
    than previously assumed.
acknowledgement: SFW acknowledges funding from Chalmers University of Technology through
  the department of Physics and the Areas of Advance Nano and Materials Science. VS
  acknowledges funding from Institute of Science and Technology Austria. Monte Carlo
  simulations were performed using computing resources from the PDC Center for High
  Performance Computing. These resources were granted by the National Academic Infrastructure
  for Supercomputing in Sweden (NAISS), partially funded by the Swedish Research Council
  through grant agreement no. 2022-06725.
article_number: '2601.06646'
article_processing_charge: No
arxiv: 1
author:
- first_name: Sophie F.
  full_name: Weber, Sophie F.
  last_name: Weber
- first_name: Veronika
  full_name: Sunko, Veronika
  id: 23cb1cf6-2c7a-11ef-91a4-f72fc19f20b3
  last_name: Sunko
  orcid: 0000-0003-2724-3523
citation:
  ama: Weber SF, Sunko V. Deterministic domain selection of antiferromagnets via magnetic
    fields. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.2601.06646">10.48550/arXiv.2601.06646</a>
  apa: Weber, S. F., &#38; Sunko, V. (n.d.). Deterministic domain selection of antiferromagnets
    via magnetic fields. <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2601.06646">https://doi.org/10.48550/arXiv.2601.06646</a>
  chicago: Weber, Sophie F., and Veronika Sunko. “Deterministic Domain Selection of
    Antiferromagnets via Magnetic Fields.” <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/arXiv.2601.06646">https://doi.org/10.48550/arXiv.2601.06646</a>.
  ieee: S. F. Weber and V. Sunko, “Deterministic domain selection of antiferromagnets
    via magnetic fields,” <i>arXiv</i>. .
  ista: Weber SF, Sunko V. Deterministic domain selection of antiferromagnets via
    magnetic fields. arXiv, 2601.06646.
  mla: Weber, Sophie F., and Veronika Sunko. “Deterministic Domain Selection of Antiferromagnets
    via Magnetic Fields.” <i>ArXiv</i>, 2601.06646, doi:<a href="https://doi.org/10.48550/arXiv.2601.06646">10.48550/arXiv.2601.06646</a>.
  short: S.F. Weber, V. Sunko, ArXiv (n.d.).
date_created: 2026-03-11T10:40:20Z
date_published: 2026-01-10T00:00:00Z
date_updated: 2026-03-16T08:57:18Z
day: '10'
department:
- _id: VeSu
doi: 10.48550/arXiv.2601.06646
external_id:
  arxiv:
  - '2601.06646'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2601.06646
month: '01'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: submitted
status: public
title: Deterministic domain selection of antiferromagnets via magnetic fields
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2026'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '21449'
abstract:
- lang: eng
  text: Three-dimensional (3D) crystals offer a route to scaling up trapped-ion systems
    for quantum sensing and quantum simulation applications; however, engineering
    coherent spin-motion couplings and effective spin-spin interactions in large crystals
    poses technical challenges associated with decoherence and prolonged timescales
    to generate appreciable entanglement. Here, we explore the possibility of speeding
    up these interactions in 3D crystals via parametric amplification. For this purpose,
    we derive a general Hamiltonian for the parametric amplification of spin-motion
    coupling that is broadly applicable to normal modes with motion transverse to
    or along the spatial extent of the crystal. Unlike in lower-dimensional crystals,
    we find that the ability to faithfully (uniformly) amplify the spin-spin interactions
    in 3D crystals depends on the physical implementation of the spin-motion coupling.
    We consider the light-shift gate, and the so-called phase-insensitive and phase-sensitive
    Mølmer-Sørensen (MS) gates, and we find that only the phase-sensitive MS gate
    can be faithfully amplified in general 3D crystals. We discuss a situation where
    nonuniform amplification can be advantageous. We also reconsider the effect of
    counter-rotating terms on parametric amplification and find that they are not
    as detrimental as previous studies suggest.
acknowledgement: We thank Wenchao Ge and Allison Carter for feedback on the manuscript.
  We also thank Wenchao Ge for sharing the numerical simulation data that we have
  used in Fig. 5 of this paper. N.N. would like to thank Perimeter Institute and Boston
  University for support during this research. S.H. acknowledges partial support from
  the Institute of Science and Technology Austria and the Austrian Science Fund (FWF)
  DOI 10.55776/F71 for the duration of this project. This work was supported by DOE
  Quantum Systems Accelerator, ARO W911NF24-1-0128, and NSF JILA-PFC PHY-2317149.
  J.J.B. and A.M.R. acknowledge support through AFOSR Grant No. FA9550-25-1-0080.
  A.S. acknowledges support by the Department of Science and Technology, Govt. of
  India through the INSPIRE Faculty Award (DST/INSPIRE/04/2023/001486), by the Anusandhan
  National Research Foundation (ANRF), Govt. of India through the Prime Minister’s
  Early Career Research Grant (PMECRG) (ANRF/ECRG/2024/001160/PMS) and by IIT Madras
  through the New Faculty Initiation Grant (NFIG).
article_number: '034004'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Samarth
  full_name: Hawaldar, Samarth
  id: 221708e1-1ff6-11ee-9fa6-85146607433e
  last_name: Hawaldar
  orcid: 0000-0002-1965-4309
- first_name: N.
  full_name: Nikhil, N.
  last_name: Nikhil
- first_name: Ana Maria
  full_name: Rey, Ana Maria
  last_name: Rey
- first_name: John J.
  full_name: Bollinger, John J.
  last_name: Bollinger
- first_name: Athreya
  full_name: Shankar, Athreya
  last_name: Shankar
citation:
  ama: Hawaldar S, Nikhil N, Rey AM, Bollinger JJ, Shankar A. Parametric amplification
    of spin-motion coupling in three-dimensional trapped-ion crystals. <i>Physical
    Review Applied</i>. 2026;25(3). doi:<a href="https://doi.org/10.1103/h1m9-h3yw">10.1103/h1m9-h3yw</a>
  apa: Hawaldar, S., Nikhil, N., Rey, A. M., Bollinger, J. J., &#38; Shankar, A. (2026).
    Parametric amplification of spin-motion coupling in three-dimensional trapped-ion
    crystals. <i>Physical Review Applied</i>. American Physical Society. <a href="https://doi.org/10.1103/h1m9-h3yw">https://doi.org/10.1103/h1m9-h3yw</a>
  chicago: Hawaldar, Samarth, N. Nikhil, Ana Maria Rey, John J. Bollinger, and Athreya
    Shankar. “Parametric Amplification of Spin-Motion Coupling in Three-Dimensional
    Trapped-Ion Crystals.” <i>Physical Review Applied</i>. American Physical Society,
    2026. <a href="https://doi.org/10.1103/h1m9-h3yw">https://doi.org/10.1103/h1m9-h3yw</a>.
  ieee: S. Hawaldar, N. Nikhil, A. M. Rey, J. J. Bollinger, and A. Shankar, “Parametric
    amplification of spin-motion coupling in three-dimensional trapped-ion crystals,”
    <i>Physical Review Applied</i>, vol. 25, no. 3. American Physical Society, 2026.
  ista: Hawaldar S, Nikhil N, Rey AM, Bollinger JJ, Shankar A. 2026. Parametric amplification
    of spin-motion coupling in three-dimensional trapped-ion crystals. Physical Review
    Applied. 25(3), 034004.
  mla: Hawaldar, Samarth, et al. “Parametric Amplification of Spin-Motion Coupling
    in Three-Dimensional Trapped-Ion Crystals.” <i>Physical Review Applied</i>, vol.
    25, no. 3, 034004, American Physical Society, 2026, doi:<a href="https://doi.org/10.1103/h1m9-h3yw">10.1103/h1m9-h3yw</a>.
  short: S. Hawaldar, N. Nikhil, A.M. Rey, J.J. Bollinger, A. Shankar, Physical Review
    Applied 25 (2026).
corr_author: '1'
date_created: 2026-03-15T23:01:35Z
date_published: 2026-03-01T00:00:00Z
date_updated: 2026-04-14T09:04:08Z
day: '01'
ddc:
- '530'
department:
- _id: JoFi
- _id: GradSch
doi: 10.1103/h1m9-h3yw
external_id:
  arxiv:
  - '2507.16741'
file:
- access_level: open_access
  checksum: f0dc6a50222b778fd75cc72a28d38689
  content_type: application/pdf
  creator: dernst
  date_created: 2026-03-16T09:24:53Z
  date_updated: 2026-03-16T09:24:53Z
  file_id: '21456'
  file_name: 2026_PhysicalReviewApplied_Hawaldar.pdf
  file_size: 1421954
  relation: main_file
  success: 1
file_date_updated: 2026-03-16T09:24:53Z
has_accepted_license: '1'
intvolume: '        25'
issue: '3'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: bdb108fd-d553-11ed-ba76-83dc74a9864f
  grant_number: F07105
  name: QUANTUM INFORMATION SYSTEMS BEYOND CLASSICAL CAPABILITIES / P5- Integration
    of Superconducting Quantum Circuits
publication: Physical Review Applied
publication_identifier:
  eissn:
  - 2331-7019
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Parametric amplification of spin-motion coupling in three-dimensional trapped-ion
  crystals
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 25
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: diamond
PlanS_conform: '1'
_id: '21450'
abstract:
- lang: eng
  text: Stellar wind mass loss of massive stars is often assumed to depend on their
    metallicity Z. Therefore, evolutionary models predict that massive stars in lower-Z
    environments are able to retain more of their hydrogen-rich layers and evolve
    into brighter cool supergiants (cool SGs; Teff < 7 kK). Surprisingly, in galaxies
    in the metallicity range 0.2 ≲ Z/Z⊙ ≲ 1.5, previous studies have not found a metallicity
    dependence on the upper luminosity limit Lmax of cool SGs. Here, we add four galaxies
    to the sample studied for this purpose with data from the Hubble Space Telescope
    and the James Webb Space Telescope (JWST). Observations of the extremely metal-poor
    dwarf galaxy I Zw 18 from JWST allow us to extend the studied metallicity range
    down to Z/Z⊙ ≈ 1/40. For cool SGs in all studied galaxies, including I Zw 18,
    we find a constant value of Lmax ≈ 105.6 L⊙, similar to literature results for
    0.2 ≲ Z/Z⊙ ≲ 1.5. In I Zw 18 and the other studied galaxies, the presence of Wolf-Rayet
    stars has been previously inferred. Although we cannot rule out that some of them
    become intermediate-temperature objects, this paints a picture in which evolved
    stars with L > 105.6 L⊙ burn helium as hot, helium-rich stars down to extremely
    low metallicity. We argue that metallicity-independent late-phase mass loss would
    be the most likely mechanism responsible for this. Regardless of the exact stripping
    mechanism (winds or, for example, binary interaction), for the Early Universe
    our results imply a limitation on black hole masses and a contribution of stars
    born with M ≳ 30 M⊙ to its surprisingly strong nitrogen enrichment. We propose
    a scenario in which single stars at low metallicity emit sufficiently hard ionizing
    radiation to produce He II and C IV lines. In this scenario, late-phase metallicity-independent
    mass loss produces hot, helium-rich stars. Due to the well-understood metallicity
    dependence on the radiation-driven winds of hot stars, a window of opportunity
    would open below 0.2 Z⊙, where self-stripped helium-rich stars can exist without
    dense Wolf-Rayet winds that absorb hard ionizing radiation.
acknowledgement: "We thank our anonymous referee for carefully reading the manuscript
  and providing a constructive report with helpful feedback. This work is based in
  part on observations made with the NASA/ESA/CSA James Webb Space Telescope. The
  data were obtained from the Mikulski Archive for Space Telescopes at the Space Telescope
  Science Institute, which is operated by the Association of Universities for Research
  in Astronomy, Inc., under NASA contract NAS 5-03127 for JWST. These observations
  are associated with program #1233. The specific observations analyzed can be accessed
  via DOI: 10.17909/3c1d-6182. Moreover, this research is based in part on observations
  made with the NASA/ESA Hubble Space Telescope obtained from the\r\nSpace Telescope
  Science Institute, which is operated by the Association of Universities for Research
  in Astronomy, Inc., under NASA contract NAS 5–26555. These observations are associated
  with programs #13664, GO-10915, and DD-11307. This research was supported in part
  by grant NSF PHY-2309135 to the Kavli Institute for Theoretical Physics (KITP).
  LRP acknowledges support by grants PID2019-105552RB-C41 and PID2022-137779OB-C41
  funded\r\nby MCIN/AEI/10.13039/501100011033 by “ERDF A way of making Europe”. LRP
  acknowledges support from grant PID2022-140483NB-C22 funded by MCIN/AEI/10.13039/501100011033."
article_number: A116
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Abel
  full_name: Schootemeijer, Abel
  last_name: Schootemeijer
- first_name: Ylva Louise Linsdotter
  full_name: Götberg, Ylva Louise Linsdotter
  id: d0648d0c-0f64-11ee-a2e0-dd0faa2e4f7d
  last_name: Götberg
  orcid: 0000-0002-6960-6911
- first_name: Norbert
  full_name: Langer, Norbert
  last_name: Langer
- first_name: Giacomo
  full_name: Bortolini, Giacomo
  last_name: Bortolini
- first_name: Alec S.
  full_name: Hirschauer, Alec S.
  last_name: Hirschauer
- first_name: Lee
  full_name: Patrick, Lee
  last_name: Patrick
citation:
  ama: Schootemeijer A, Götberg YLL, Langer N, Bortolini G, Hirschauer AS, Patrick
    L. A constant upper luminosity limit of cool supergiant stars down to the extremely
    low metallicity of I Zw 18. <i>Astronomy &#38; Astrophysics</i>. 2026;707. doi:<a
    href="https://doi.org/10.1051/0004-6361/202557675">10.1051/0004-6361/202557675</a>
  apa: Schootemeijer, A., Götberg, Y. L. L., Langer, N., Bortolini, G., Hirschauer,
    A. S., &#38; Patrick, L. (2026). A constant upper luminosity limit of cool supergiant
    stars down to the extremely low metallicity of I Zw 18. <i>Astronomy &#38; Astrophysics</i>.
    EDP Sciences. <a href="https://doi.org/10.1051/0004-6361/202557675">https://doi.org/10.1051/0004-6361/202557675</a>
  chicago: Schootemeijer, Abel, Ylva Louise Linsdotter Götberg, Norbert Langer, Giacomo
    Bortolini, Alec S. Hirschauer, and Lee Patrick. “A Constant Upper Luminosity Limit
    of Cool Supergiant Stars down to the Extremely Low Metallicity of I Zw 18.” <i>Astronomy
    &#38; Astrophysics</i>. EDP Sciences, 2026. <a href="https://doi.org/10.1051/0004-6361/202557675">https://doi.org/10.1051/0004-6361/202557675</a>.
  ieee: A. Schootemeijer, Y. L. L. Götberg, N. Langer, G. Bortolini, A. S. Hirschauer,
    and L. Patrick, “A constant upper luminosity limit of cool supergiant stars down
    to the extremely low metallicity of I Zw 18,” <i>Astronomy &#38; Astrophysics</i>,
    vol. 707. EDP Sciences, 2026.
  ista: Schootemeijer A, Götberg YLL, Langer N, Bortolini G, Hirschauer AS, Patrick
    L. 2026. A constant upper luminosity limit of cool supergiant stars down to the
    extremely low metallicity of I Zw 18. Astronomy &#38; Astrophysics. 707, A116.
  mla: Schootemeijer, Abel, et al. “A Constant Upper Luminosity Limit of Cool Supergiant
    Stars down to the Extremely Low Metallicity of I Zw 18.” <i>Astronomy &#38; Astrophysics</i>,
    vol. 707, A116, EDP Sciences, 2026, doi:<a href="https://doi.org/10.1051/0004-6361/202557675">10.1051/0004-6361/202557675</a>.
  short: A. Schootemeijer, Y.L.L. Götberg, N. Langer, G. Bortolini, A.S. Hirschauer,
    L. Patrick, Astronomy &#38; Astrophysics 707 (2026).
date_created: 2026-03-15T23:01:35Z
date_published: 2026-03-01T00:00:00Z
date_updated: 2026-03-16T09:07:55Z
day: '01'
ddc:
- '520'
department:
- _id: YlGo
doi: 10.1051/0004-6361/202557675
external_id:
  arxiv:
  - '2510.12594'
file:
- access_level: open_access
  checksum: 02a0cd932340207c96fdd3059490ad29
  content_type: application/pdf
  creator: dernst
  date_created: 2026-03-16T09:05:06Z
  date_updated: 2026-03-16T09:05:06Z
  file_id: '21455'
  file_name: 2026_AstronomyAstrophysics_Schootemeijer.pdf
  file_size: 2102107
  relation: main_file
  success: 1
file_date_updated: 2026-03-16T09:05:06Z
has_accepted_license: '1'
intvolume: '       707'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: Astronomy & Astrophysics
publication_identifier:
  eissn:
  - 1432-0746
  issn:
  - 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: A constant upper luminosity limit of cool supergiant stars down to the extremely
  low metallicity of I Zw 18
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 707
year: '2026'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: diamond
PlanS_conform: '1'
_id: '21451'
abstract:
- lang: eng
  text: The population of the little red dots (LRDs) may represent a key phase of
    supermassive black hole (SMBH) growth. A cocoon of dense excited gas is emerging
    as a key component to explain the most striking properties of LRDs, such as strong
    Balmer breaks and Balmer absorption, as well as the weak IR emission. To dissect
    the structure of LRDs, we analyzed new deep JWST/NIRSpec PRISM and G395H spectra
    of FRESCO-GN-9771, one of the most luminous known LRDs at z = 5.5. These spectra
    reveal a strong Balmer break, broad Balmer lines, and very narrow [O III] emission.
    We revealed a forest of optical [Fe II] lines, which we argue are emerging from
    a dense (nH = 109 − 10 cm−3) warm layer with electron temperature Te ≈ 7000 K.
    The broad wings of Hα and Hβ have an exponential profile due to electron scattering
    in this same layer. The high Hα : Hβ : Hγ flux ratio of ≈10.4 : 1 : 0.14 is an
    indicator of collisional excitation and resonant scattering dominating the Balmer
    line emission. A narrow Hγ component, unseen in the other two Balmer lines due
    to outshining by the broad components, could trace the ISM of a normal host galaxy
    with a star formation rate of ∼5 M⊙ yr−1. The warm layer is mostly opaque to Balmer
    transitions, producing a characteristic P Cygni profile in the line centers suggesting
    outflowing motions. This same layer is responsible for shaping the Balmer break.
    The broadband spectrum can be reasonably matched by a simple photoionized slab
    model that dominates the λ > 1500 Å continuum and a low-mass (∼108 M⊙) galaxy
    that could explain the narrow [O III], with only a subdominant contribution to
    the UV continuum. Our findings indicate that Balmer lines are not directly tracing
    the gas kinematics near the SMBH and that the BH mass scale is likely much lower
    than virial indicators suggest.
acknowledgement: 'We thank the scientific referee for useful and constructive comments.
  We thank Ylva Götberg and Zoltan Haiman for insightful discussions about the physics
  of gaseous envelopes and accretion into black holes. Funded by the European Union
  (ERC, AGENTS, 101076224). Views and opinions expressed are however those of the
  author(s) only and do not necessarily reflect those of the European Union or the
  European Research Council. Neither the European Union nor the granting authority
  can be held responsible for them. This work is based in part on observations made
  with the NASA/ESA/CSA James Webb Space Telescope. The data were obtained from the
  Mikulski Archive for Space Telescopes at the Space Telescope Science Institute,
  which is operated by the Association of Universities for Research in Astronomy,
  Inc., under NASA contract NAS 5-03127 for JWST. These observations are associated
  with program #5664. This work has received funding from the Swiss State Secretariat
  for Education, Research and Innovation (SERI) under contract number MB22.00072,
  as well as from the Swiss National Science Foundation (SNSF) through project grant
  200020_207349.'
article_number: A75
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Alberto
  full_name: Torralba Torregrosa, Alberto
  id: 018f0249-0e87-11f0-b167-cbce08fbd541
  last_name: Torralba Torregrosa
  orcid: 0000-0001-5586-6950
- first_name: Jorryt J
  full_name: Matthee, Jorryt J
  id: 7439a258-f3c0-11ec-9501-9df22fe06720
  last_name: Matthee
  orcid: 0000-0003-2871-127X
- first_name: Gabriele
  full_name: Pezzulli, Gabriele
  last_name: Pezzulli
- first_name: Rohan P.
  full_name: Naidu, Rohan P.
  last_name: Naidu
- first_name: Yuzo
  full_name: Ishikawa, Yuzo
  last_name: Ishikawa
- first_name: Gabriel B.
  full_name: Brammer, Gabriel B.
  last_name: Brammer
- first_name: Seok Jun
  full_name: Chang, Seok Jun
  last_name: Chang
- first_name: John
  full_name: Chisholm, John
  last_name: Chisholm
- first_name: Anna
  full_name: De Graaff, Anna
  last_name: De Graaff
- first_name: Francesco
  full_name: D’Eugenio, Francesco
  last_name: D’Eugenio
- first_name: Claudia
  full_name: Di Cesare, Claudia
  id: 2d002343-372f-11ef-98ec-a164d20427cb
  last_name: Di Cesare
- first_name: Anna Christina
  full_name: Eilers, Anna Christina
  last_name: Eilers
- first_name: Jenny E.
  full_name: Greene, Jenny E.
  last_name: Greene
- first_name: Max
  full_name: Gronke, Max
  last_name: Gronke
- first_name: Edoardo
  full_name: Iani, Edoardo
  id: 4053390a-6b68-11ef-9828-a3b8adef8d0a
  last_name: Iani
  orcid: 0000-0001-8386-3546
- first_name: Vasily
  full_name: Kokorev, Vasily
  last_name: Kokorev
- first_name: Gauri
  full_name: Kotiwale, Gauri
  id: 1438afc8-1ff6-11ee-9fa6-cd4a75d66875
  last_name: Kotiwale
- first_name: Ivan
  full_name: Kramarenko, Ivan
  id: 9a9394cb-3200-11ee-973b-f5ba2a8b16e4
  last_name: Kramarenko
  orcid: 0000-0001-5346-6048
- first_name: Yilun
  full_name: Ma, Yilun
  last_name: Ma
- first_name: Sara
  full_name: Mascia, Sara
  id: edaf889c-c7cd-11ef-ab1b-bb28c431bd29
  last_name: Mascia
- first_name: Benjamín
  full_name: Navarrete, Benjamín
  id: aa14a535-50c9-11ef-b52e-e0c373d10148
  last_name: Navarrete
- first_name: Erica
  full_name: Nelson, Erica
  last_name: Nelson
- first_name: Pascal
  full_name: Oesch, Pascal
  last_name: Oesch
- first_name: Robert A.
  full_name: Simcoe, Robert A.
  last_name: Simcoe
- first_name: Stijn
  full_name: Wuyts, Stijn
  last_name: Wuyts
citation:
  ama: Torralba Torregrosa A, Matthee JJ, Pezzulli G, et al. The warm outer layer
    of a little red dot as the source of [Fe ii] and collisional Balmer lines with
    scattering wings. <i>Astronomy &#38; Astrophysics</i>. 2026;707. doi:<a href="https://doi.org/10.1051/0004-6361/202557537">10.1051/0004-6361/202557537</a>
  apa: Torralba Torregrosa, A., Matthee, J. J., Pezzulli, G., Naidu, R. P., Ishikawa,
    Y., Brammer, G. B., … Wuyts, S. (2026). The warm outer layer of a little red dot
    as the source of [Fe ii] and collisional Balmer lines with scattering wings. <i>Astronomy
    &#38; Astrophysics</i>. EDP Sciences. <a href="https://doi.org/10.1051/0004-6361/202557537">https://doi.org/10.1051/0004-6361/202557537</a>
  chicago: Torralba Torregrosa, Alberto, Jorryt J Matthee, Gabriele Pezzulli, Rohan
    P. Naidu, Yuzo Ishikawa, Gabriel B. Brammer, Seok Jun Chang, et al. “The Warm
    Outer Layer of a Little Red Dot as the Source of [Fe Ii] and Collisional Balmer
    Lines with Scattering Wings.” <i>Astronomy &#38; Astrophysics</i>. EDP Sciences,
    2026. <a href="https://doi.org/10.1051/0004-6361/202557537">https://doi.org/10.1051/0004-6361/202557537</a>.
  ieee: A. Torralba Torregrosa <i>et al.</i>, “The warm outer layer of a little red
    dot as the source of [Fe ii] and collisional Balmer lines with scattering wings,”
    <i>Astronomy &#38; Astrophysics</i>, vol. 707. EDP Sciences, 2026.
  ista: Torralba Torregrosa A, Matthee JJ, Pezzulli G, Naidu RP, Ishikawa Y, Brammer
    GB, Chang SJ, Chisholm J, De Graaff A, D’Eugenio F, Di Cesare C, Eilers AC, Greene
    JE, Gronke M, Iani E, Kokorev V, Kotiwale G, Kramarenko I, Ma Y, Mascia S, Navarrete
    B, Nelson E, Oesch P, Simcoe RA, Wuyts S. 2026. The warm outer layer of a little
    red dot as the source of [Fe ii] and collisional Balmer lines with scattering
    wings. Astronomy &#38; Astrophysics. 707, A75.
  mla: Torralba Torregrosa, Alberto, et al. “The Warm Outer Layer of a Little Red
    Dot as the Source of [Fe Ii] and Collisional Balmer Lines with Scattering Wings.”
    <i>Astronomy &#38; Astrophysics</i>, vol. 707, A75, EDP Sciences, 2026, doi:<a
    href="https://doi.org/10.1051/0004-6361/202557537">10.1051/0004-6361/202557537</a>.
  short: A. Torralba Torregrosa, J.J. Matthee, G. Pezzulli, R.P. Naidu, Y. Ishikawa,
    G.B. Brammer, S.J. Chang, J. Chisholm, A. De Graaff, F. D’Eugenio, C. Di Cesare,
    A.C. Eilers, J.E. Greene, M. Gronke, E. Iani, V. Kokorev, G. Kotiwale, I. Kramarenko,
    Y. Ma, S. Mascia, B. Navarrete, E. Nelson, P. Oesch, R.A. Simcoe, S. Wuyts, Astronomy
    &#38; Astrophysics 707 (2026).
corr_author: '1'
date_created: 2026-03-15T23:01:36Z
date_published: 2026-03-01T00:00:00Z
date_updated: 2026-03-16T10:59:16Z
day: '01'
ddc:
- '520'
department:
- _id: JoMa
doi: 10.1051/0004-6361/202557537
external_id:
  arxiv:
  - '2510.00103'
file:
- access_level: open_access
  checksum: fcab9cb3dcf1d68612e1fdc8191643c1
  content_type: application/pdf
  creator: dernst
  date_created: 2026-03-16T10:57:49Z
  date_updated: 2026-03-16T10:57:49Z
  file_id: '21460'
  file_name: 2026_AstronomyAstrophysics_Torralba2.pdf
  file_size: 2510157
  relation: main_file
  success: 1
file_date_updated: 2026-03-16T10:57:49Z
has_accepted_license: '1'
intvolume: '       707'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: bd9b2118-d553-11ed-ba76-db24564edfea
  grant_number: '101076224'
  name: Young galaxies as tracers and agents of cosmic reionization
publication: Astronomy & Astrophysics
publication_identifier:
  eissn:
  - 1432-0746
  issn:
  - 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: The warm outer layer of a little red dot as the source of [Fe ii] and collisional
  Balmer lines with scattering wings
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 707
year: '2026'
...
