---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '19366'
abstract:
- lang: eng
text: Staphylococcus aureus (S. aureus) is one of the most common causative agents
of mammary gland infection and mastitis, but the specific role of S. aureus-derived
extracellular vesicles (SaEVs) in mastitis has been poorly studied to date. Here,
we aimed to investigate the response of bovine monocyte-derived macrophages (boMdM)
to SaEVs of the genotype B (GTB) mastitis-related strain M5512B. Specifically,
we evaluated the effects on the actin cytoskeleton, gene expression, and the SaEV
proteomic cargo. Furthermore, we assessed to what extent the cellular and molecular
response of boMdM to SaEVs differed from peripheral mononuclear blood cells (PBMCs)
used for in vitro derivation of the former. We observed that SaEVs induced morphological
changes in boMdM, leading to a pro-inflammatory and pyroptosis-related increased
gene expression. Additionally, our study revealed that boMdM and PBMCs exhibited
stimulus-specific differing responses. The proteomic analysis of SaEVs identified
clusters of proteins related to virulence and antibiotic resistance, supporting
the theory that S. aureus might use EVs to evade host defences and colonize the
mammary gland. Our results bring new insights into how SaEVs might impact the
host during an S. aureus infection, which can be useful for future S. aureus vaccine
development.
acknowledgement: "The authors thank Michele Guastalla for his contributions to the
boMdM analyses and Stephan Handschin from the Scientific Center for Optical and
Electron Microscopy (ScopeM) of ETH Zurich for the TEM imaging. We gratefully acknowledge
the Functional Genomics Center Zurich (FGCZ) for performing the mass spectrometry
analysis for this study.\r\nOpen access funding provided by Swiss Federal Institute
of Technology Zurich. This work was supported by basic funding from ETH Zurich."
article_processing_charge: Yes
article_type: original
author:
- first_name: Mara D.
full_name: Saenz-De-Juano, Mara D.
last_name: Saenz-De-Juano
- first_name: Giulia
full_name: Silvestrelli, Giulia
id: 12632ae8-799e-11ef-94a2-e5a3b5ef49e9
last_name: Silvestrelli
- first_name: Samuel
full_name: Buri, Samuel
last_name: Buri
- first_name: Léa V.
full_name: Zinsli, Léa V.
last_name: Zinsli
- first_name: Mathias
full_name: Schmelcher, Mathias
last_name: Schmelcher
- first_name: Susanne E.
full_name: Ulbrich, Susanne E.
last_name: Ulbrich
citation:
ama: Saenz-De-Juano MD, Silvestrelli G, Buri S, Zinsli LV, Schmelcher M, Ulbrich
SE. Mastitis-related Staphylococcus aureus-derived extracellular vesicles induce
a pro-inflammatory response in bovine monocyte-derived macrophages. Scientific
Reports. 2025;15:6059. doi:10.1038/s41598-025-90466-6
apa: Saenz-De-Juano, M. D., Silvestrelli, G., Buri, S., Zinsli, L. V., Schmelcher,
M., & Ulbrich, S. E. (2025). Mastitis-related Staphylococcus aureus-derived
extracellular vesicles induce a pro-inflammatory response in bovine monocyte-derived
macrophages. Scientific Reports. Springer Nature. https://doi.org/10.1038/s41598-025-90466-6
chicago: Saenz-De-Juano, Mara D., Giulia Silvestrelli, Samuel Buri, Léa V. Zinsli,
Mathias Schmelcher, and Susanne E. Ulbrich. “Mastitis-Related Staphylococcus Aureus-Derived
Extracellular Vesicles Induce a pro-Inflammatory Response in Bovine Monocyte-Derived
Macrophages.” Scientific Reports. Springer Nature, 2025. https://doi.org/10.1038/s41598-025-90466-6.
ieee: M. D. Saenz-De-Juano, G. Silvestrelli, S. Buri, L. V. Zinsli, M. Schmelcher,
and S. E. Ulbrich, “Mastitis-related Staphylococcus aureus-derived extracellular
vesicles induce a pro-inflammatory response in bovine monocyte-derived macrophages,”
Scientific Reports, vol. 15. Springer Nature, p. 6059, 2025.
ista: Saenz-De-Juano MD, Silvestrelli G, Buri S, Zinsli LV, Schmelcher M, Ulbrich
SE. 2025. Mastitis-related Staphylococcus aureus-derived extracellular vesicles
induce a pro-inflammatory response in bovine monocyte-derived macrophages. Scientific
Reports. 15, 6059.
mla: Saenz-De-Juano, Mara D., et al. “Mastitis-Related Staphylococcus Aureus-Derived
Extracellular Vesicles Induce a pro-Inflammatory Response in Bovine Monocyte-Derived
Macrophages.” Scientific Reports, vol. 15, Springer Nature, 2025, p. 6059,
doi:10.1038/s41598-025-90466-6.
short: M.D. Saenz-De-Juano, G. Silvestrelli, S. Buri, L.V. Zinsli, M. Schmelcher,
S.E. Ulbrich, Scientific Reports 15 (2025) 6059.
date_created: 2025-03-09T23:01:26Z
date_published: 2025-02-19T00:00:00Z
date_updated: 2025-09-30T10:58:59Z
day: '19'
ddc:
- '570'
department:
- _id: LoSw
doi: 10.1038/s41598-025-90466-6
external_id:
isi:
- '001426697000031'
pmid:
- '39972051'
file:
- access_level: open_access
checksum: 51b55ae299de1fa126016a11024b499a
content_type: application/pdf
creator: dernst
date_created: 2025-03-10T12:00:34Z
date_updated: 2025-03-10T12:00:34Z
file_id: '19380'
file_name: 2025_ScientificReports_SaenzdeJuano.pdf
file_size: 2780316
relation: main_file
success: 1
file_date_updated: 2025-03-10T12:00:34Z
fulldoi: https://doi.org/10.1038/s41598-025-90466-6
has_accepted_license: '1'
intvolume: ' 15'
isi: 1
language:
- iso: eng
license: https://creativecommons.org/licenses/by/4.0/
month: '02'
oa: 1
oa_version: Published Version
page: '6059'
pmid: 1
publication: Scientific Reports
publication_identifier:
eissn:
- 2045-2322
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mastitis-related Staphylococcus aureus-derived extracellular vesicles induce
a pro-inflammatory response in bovine monocyte-derived macrophages
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 15
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '19367'
article_number: kiaf055
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Joke G
full_name: De Jaeger-Braet, Joke G
id: 26bd38d3-c59a-11ee-a1af-d7a988cafcc5
last_name: De Jaeger-Braet
citation:
ama: De Jaeger-Braet JG. Arabidopsis accessions and their difference in heat tolerance
during meiosis. Plant Physiology. 2025;197(2). doi:10.1093/plphys/kiaf055
apa: De Jaeger-Braet, J. G. (2025). Arabidopsis accessions and their difference
in heat tolerance during meiosis. Plant Physiology. Oxford University Press.
https://doi.org/10.1093/plphys/kiaf055
chicago: De Jaeger-Braet, Joke G. “Arabidopsis Accessions and Their Difference in
Heat Tolerance during Meiosis.” Plant Physiology. Oxford University Press,
2025. https://doi.org/10.1093/plphys/kiaf055.
ieee: J. G. De Jaeger-Braet, “Arabidopsis accessions and their difference in heat
tolerance during meiosis,” Plant Physiology, vol. 197, no. 2. Oxford University
Press, 2025.
ista: De Jaeger-Braet JG. 2025. Arabidopsis accessions and their difference in heat
tolerance during meiosis. Plant Physiology. 197(2), kiaf055.
mla: De Jaeger-Braet, Joke G. “Arabidopsis Accessions and Their Difference in Heat
Tolerance during Meiosis.” Plant Physiology, vol. 197, no. 2, kiaf055,
Oxford University Press, 2025, doi:10.1093/plphys/kiaf055.
short: J.G. De Jaeger-Braet, Plant Physiology 197 (2025).
corr_author: '1'
date_created: 2025-03-09T23:01:27Z
date_published: 2025-02-07T00:00:00Z
date_updated: 2025-09-30T10:48:08Z
day: '07'
ddc:
- '580'
department:
- _id: XiFe
doi: 10.1093/plphys/kiaf055
external_id:
isi:
- '001427994500001'
pmid:
- '39938057'
file:
- access_level: open_access
checksum: 28e18fd7d00c74782f4f42501ecd4aae
content_type: application/pdf
creator: dernst
date_created: 2025-04-16T07:25:21Z
date_updated: 2025-04-16T07:25:21Z
file_id: '19570'
file_name: 2025_PlantPhysiology_deJaegerBraet.pdf
file_size: 320184
relation: main_file
success: 1
file_date_updated: 2025-04-16T07:25:21Z
fulldoi: https://doi.org/10.1093/plphys/kiaf055
has_accepted_license: '1'
intvolume: ' 197'
isi: 1
issue: '2'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
publication: Plant Physiology
publication_identifier:
eissn:
- 1532-2548
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Arabidopsis accessions and their difference in heat tolerance during meiosis
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 197
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '19369'
abstract:
- lang: eng
text: Monitoring and estimating mountain snowpack mass over regional scales is still
a challenge because of the inadequacy of observational networks in capturing spatiotemporal
variability, and limitations in remotely sensed retrievals. Recent work using
C-band synthetic aperture radar (SAR) backscatter data from the Sentinel-1 satellite
mission has shown good promise for tracking mountain snow depth over specific
northern hemisphere ranges, although the broader potential is still unknown. Here,
we extend the new Sentinel-1 based modeling framework beyond the northern hemisphere
by only utilizing globally available input data, and evaluate different model
parametrization and model performance over the Chilean and Argentine Andes mountains,
which contain the largest mountain snowpack in the southern hemisphere. The accuracy
of Sentinel-1 snow depth estimates is evaluated against an extensive in situ network
available for the region. Satellite-retrieved snow depth is found to have poorer
performance across the Andes than observed for northern hemisphere mountain ranges
because of greater sensitivity to evergreen forest cover and shallower snowpacks.
The algorithm does offer some skill but performance is variable and site-dependent.
Algorithm performance is best over regions with limited evergreen forest cover
(<15%) and snow depths greater than 0.75 m, although the retrievals over-estimate
snow depth across most sites. Systemic errors for specific snow classes and across
different snow depths are shown, highlighting specific areas in need of further
investigation and development.
acknowledgement: This research was supported by the University of Queensland's PhD
scholarship program, the Australian Research Council under the Future Fellowship
program (Project ID:FT140100977), and the Sustainable Minerals Institute International
Centre of Excellence (Chile). Fiona Johnson is supported by a UNSW Scientia Funding
and ARC Training Centre in Data Analytics for Resources and Environments(Grant IC190100031).
The authors also thank Liliana Pagliero, Maxi Viale and Rodrigo Correa for their
support with obtaining the DGA, SNIH, and Codelco data sets, and the PlanetLabs
research and education initiative for free imagery. Open access publishing facilitated
by The University of Queensland, as part of the Wiley ‐ The University of Queensland
agreement via the Council of Australian University Librarians.
article_number: e2024WR037766
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: N.
full_name: Bulovic, N.
last_name: Bulovic
- first_name: F.
full_name: Johnson, F.
last_name: Johnson
- first_name: H.
full_name: Lievens, H.
last_name: Lievens
- first_name: Thomas
full_name: Shaw, Thomas
id: 3caa3f91-1f03-11ee-96ce-e0e553054d6e
last_name: Shaw
orcid: 0000-0001-7640-6152
- first_name: J.
full_name: Mcphee, J.
last_name: Mcphee
- first_name: S.
full_name: Gascoin, S.
last_name: Gascoin
- first_name: M.
full_name: Demuzere, M.
last_name: Demuzere
- first_name: N.
full_name: Mcintyre, N.
last_name: Mcintyre
citation:
ama: Bulovic N, Johnson F, Lievens H, et al. Evaluating the performance of sentinel-1
SAR derived snow depth retrievals over the extratropical Andes cordillera. Water
Resources Research. 2025;61(2). doi:10.1029/2024WR037766
apa: Bulovic, N., Johnson, F., Lievens, H., Shaw, T., Mcphee, J., Gascoin, S., …
Mcintyre, N. (2025). Evaluating the performance of sentinel-1 SAR derived snow
depth retrievals over the extratropical Andes cordillera. Water Resources Research.
Wiley. https://doi.org/10.1029/2024WR037766
chicago: Bulovic, N., F. Johnson, H. Lievens, Thomas Shaw, J. Mcphee, S. Gascoin,
M. Demuzere, and N. Mcintyre. “Evaluating the Performance of Sentinel-1 SAR Derived
Snow Depth Retrievals over the Extratropical Andes Cordillera.” Water Resources
Research. Wiley, 2025. https://doi.org/10.1029/2024WR037766.
ieee: N. Bulovic et al., “Evaluating the performance of sentinel-1 SAR derived
snow depth retrievals over the extratropical Andes cordillera,” Water Resources
Research, vol. 61, no. 2. Wiley, 2025.
ista: Bulovic N, Johnson F, Lievens H, Shaw T, Mcphee J, Gascoin S, Demuzere M,
Mcintyre N. 2025. Evaluating the performance of sentinel-1 SAR derived snow depth
retrievals over the extratropical Andes cordillera. Water Resources Research.
61(2), e2024WR037766.
mla: Bulovic, N., et al. “Evaluating the Performance of Sentinel-1 SAR Derived Snow
Depth Retrievals over the Extratropical Andes Cordillera.” Water Resources
Research, vol. 61, no. 2, e2024WR037766, Wiley, 2025, doi:10.1029/2024WR037766.
short: N. Bulovic, F. Johnson, H. Lievens, T. Shaw, J. Mcphee, S. Gascoin, M. Demuzere,
N. Mcintyre, Water Resources Research 61 (2025).
date_created: 2025-03-09T23:01:27Z
date_published: 2025-02-01T00:00:00Z
date_updated: 2025-09-30T10:48:43Z
day: '01'
ddc:
- '550'
department:
- _id: FrPe
doi: 10.1029/2024WR037766
external_id:
isi:
- '001419509100001'
file:
- access_level: open_access
checksum: 8ff09dcae2e508fd72aee80300fc40e2
content_type: application/pdf
creator: dernst
date_created: 2025-03-10T08:16:05Z
date_updated: 2025-03-10T08:16:05Z
file_id: '19377'
file_name: 2025_WaterResourcesResearch_Bulovic.pdf
file_size: 6362563
relation: main_file
success: 1
file_date_updated: 2025-03-10T08:16:05Z
fulldoi: https://doi.org/10.1029/2024WR037766
has_accepted_license: '1'
intvolume: ' 61'
isi: 1
issue: '2'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
publication: Water Resources Research
publication_identifier:
eissn:
- 1944-7973
issn:
- 0043-1397
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Evaluating the performance of sentinel-1 SAR derived snow depth retrievals
over the extratropical Andes cordillera
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 61
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '19371'
abstract:
- lang: eng
text: We investigate a molecular quantum rotor in a two-dimensional Bose-Einstein
condensate. The focus is on studying the angulon quasiparticle concept in the
crossover from few- to many-body physics. To this end, we formulate the problem
in real space and solve it with a mean-field approach in the frame co-rotating
with the impurity. We show that the system starts to feature angulon characteristics
when the size of the bosonic cloud is large enough to screen the rotor. More importantly,
we demonstrate the departure from the angulon picture for large system sizes or
large angular momenta where the properties of the system are determined by collective
excitations of the Bose gas.
acknowledgement: "We thank Fabian Brauneis, Arthur Christianen and Pietro Massignan
for useful discussions. M. S. and A. G. V. would like to thank the Institut Henri
Poincaré\r\n(UAR 839 CNRS-Sorbonne Université) and the LabEx CARMIN (ANR-10-LABX-59-01)
for\r\ntheir support and hospitality during the final stages of completion of this
work. M.S.\r\nand M.T. acknowledge the National Science Centre, Poland, within Sonata
Bis Grant No.\r\n2020/38/E/ST2/00564. M.L. acknowledges support by the European
Research Council (ERC)\r\nStarting Grant No.801770 (ANGULON). M.S. acknowledges
the National Science Centre,\r\nPoland, within Preludium Grant No. 2023/49/N/ST2/03820.
We gratefully acknowledge\r\nPoland’s high-performance Infrastructure PLGrid ACK
Cyfronet AGH for providing computer\r\nfacilities and support within computational
grant no PLG/2023/016878."
article_number: '059'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Michał
full_name: Suchorowski, Michał
last_name: Suchorowski
- first_name: Alina
full_name: Badamshina, Alina
last_name: Badamshina
- first_name: Mikhail
full_name: Lemeshko, Mikhail
id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
last_name: Lemeshko
orcid: 0000-0002-6990-7802
- first_name: Michał
full_name: Tomza, Michał
last_name: Tomza
- first_name: Artem
full_name: Volosniev, Artem
id: 37D278BC-F248-11E8-B48F-1D18A9856A87
last_name: Volosniev
orcid: 0000-0003-0393-5525
citation:
ama: Suchorowski M, Badamshina A, Lemeshko M, Tomza M, Volosniev A. Quantum rotor
in a two-dimensional mesoscopic Bose gas. SciPost Physics. 2025;18(2).
doi:10.21468/SciPostPhys.18.2.059
apa: Suchorowski, M., Badamshina, A., Lemeshko, M., Tomza, M., & Volosniev,
A. (2025). Quantum rotor in a two-dimensional mesoscopic Bose gas. SciPost
Physics. SciPost Foundation. https://doi.org/10.21468/SciPostPhys.18.2.059
chicago: Suchorowski, Michał, Alina Badamshina, Mikhail Lemeshko, Michał Tomza,
and Artem Volosniev. “Quantum Rotor in a Two-Dimensional Mesoscopic Bose Gas.”
SciPost Physics. SciPost Foundation, 2025. https://doi.org/10.21468/SciPostPhys.18.2.059.
ieee: M. Suchorowski, A. Badamshina, M. Lemeshko, M. Tomza, and A. Volosniev, “Quantum
rotor in a two-dimensional mesoscopic Bose gas,” SciPost Physics, vol.
18, no. 2. SciPost Foundation, 2025.
ista: Suchorowski M, Badamshina A, Lemeshko M, Tomza M, Volosniev A. 2025. Quantum
rotor in a two-dimensional mesoscopic Bose gas. SciPost Physics. 18(2), 059.
mla: Suchorowski, Michał, et al. “Quantum Rotor in a Two-Dimensional Mesoscopic
Bose Gas.” SciPost Physics, vol. 18, no. 2, 059, SciPost Foundation, 2025,
doi:10.21468/SciPostPhys.18.2.059.
short: M. Suchorowski, A. Badamshina, M. Lemeshko, M. Tomza, A. Volosniev, SciPost
Physics 18 (2025).
corr_author: '1'
date_created: 2025-03-09T23:01:28Z
date_published: 2025-02-19T00:00:00Z
date_updated: 2025-04-14T07:48:55Z
day: '19'
ddc:
- '530'
department:
- _id: MiLe
doi: 10.21468/SciPostPhys.18.2.059
ec_funded: 1
external_id:
arxiv:
- '2407.06046'
file:
- access_level: open_access
checksum: 7bed8c68c36d495540491bd0579e33e4
content_type: application/pdf
creator: dernst
date_created: 2025-03-10T07:08:21Z
date_updated: 2025-03-10T07:08:21Z
file_id: '19376'
file_name: 2025_SciPostPhys_Suchorowski.pdf
file_size: 1124066
relation: main_file
success: 1
file_date_updated: 2025-03-10T07:08:21Z
fulldoi: https://doi.org/10.21468/SciPostPhys.18.2.059
has_accepted_license: '1'
intvolume: ' 18'
issue: '2'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
project:
- _id: 2688CF98-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '801770'
name: 'Angulon: physics and applications of a new quasiparticle'
publication: SciPost Physics
publication_identifier:
eissn:
- 2542-4653
publication_status: published
publisher: SciPost Foundation
quality_controlled: '1'
scopus_import: '1'
status: public
title: Quantum rotor in a two-dimensional mesoscopic Bose gas
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 18
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '19373'
abstract:
- lang: eng
text: Reproducible pattern and form generation during embryogenesis is poorly understood.
Intestinal organoid morphogenesis involves a number of mechanochemical regulators
such as cell-type-specific cytoskeletal forces and osmotically driven lumen volume
changes. It is unclear how these forces are coordinated in time and space to ensure
robust morphogenesis. Here we show how mechanosensitive feedback on cytoskeletal
tension gives rise to morphological bistability in a minimal model of organoid
morphogenesis. In the model, lumen volume changes can impact the epithelial shape
via both direct mechanical and indirect mechanosensitive mechanisms. We find that
both bulged and budded crypt states are possible and dependent on the history
of volume changes. We test key modelling assumptions via biophysical and pharmacological
experiments to demonstrate how bistability can explain experimental observations,
such as the importance of the timing of lumen shrinkage and robustness of the
final morphogenetic state to mechanical perturbations. This suggests that bistability
arising from feedback between cellular tensions and fluid pressure could be a
general mechanism that coordinates multicellular shape changes in developing systems.
acknowledgement: We thank all members of the Hannezo and Liberali groups for fruitful
discussions, as well as C. Schwayer, G. Quintas, L. Capolupo, D. Bruckner and D.
Pinheiro for reading the manuscript. We also thank Y. Wu and X. Wu from the Yang
group for performing experiments in the last rounds of revision and the So group
at the National Institute of Biological Sciences, Beijing, for helping with the
light-sheet time-lapse experiments. This work received funding from the European
Research Council (ERC) under the European Union’s Horizon 2020 research and innovation
programme via grant agreement no. 758617 (to P.L.), Swiss National Foundation (SNF)
(no. POOP3_157531 to P.L.), the ERC under the European Union’s Horizon 2020 research
and innovation programme under grant agreement no. 851288 (to E.H.) and the Austrian
Science Fund (FWF) (no. P 31639 to E.H.). This work was supported by the National
Natural Science Foundation of China via grant no.3247060387 (to Q.Y.) and the Strategic
Priority Research Program of the Chinese Academy of Sciences (no. XDB0820000 to
Q.Y.) . Open access funding provided by Institute of Science and Technology (IST
Austria).
article_number: '078104'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Shi-lei
full_name: Xue, Shi-lei
id: 31D2C804-F248-11E8-B48F-1D18A9856A87
last_name: Xue
- first_name: Qiutan
full_name: Yang, Qiutan
last_name: Yang
- first_name: Prisca
full_name: Liberali, Prisca
last_name: Liberali
- first_name: Edouard B
full_name: Hannezo, Edouard B
id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
last_name: Hannezo
orcid: 0000-0001-6005-1561
citation:
ama: Xue S, Yang Q, Liberali P, Hannezo EB. Mechanochemical bistability of intestinal
organoids enables robust morphogenesis. Nature Physics. 2025;21. doi:10.1038/s41567-025-02792-1
apa: Xue, S., Yang, Q., Liberali, P., & Hannezo, E. B. (2025). Mechanochemical
bistability of intestinal organoids enables robust morphogenesis. Nature Physics.
Springer Nature. https://doi.org/10.1038/s41567-025-02792-1
chicago: Xue, Shi-lei, Qiutan Yang, Prisca Liberali, and Edouard B Hannezo. “Mechanochemical
Bistability of Intestinal Organoids Enables Robust Morphogenesis.” Nature Physics.
Springer Nature, 2025. https://doi.org/10.1038/s41567-025-02792-1.
ieee: S. Xue, Q. Yang, P. Liberali, and E. B. Hannezo, “Mechanochemical bistability
of intestinal organoids enables robust morphogenesis,” Nature Physics,
vol. 21. Springer Nature, 2025.
ista: Xue S, Yang Q, Liberali P, Hannezo EB. 2025. Mechanochemical bistability of
intestinal organoids enables robust morphogenesis. Nature Physics. 21, 078104.
mla: Xue, Shi-lei, et al. “Mechanochemical Bistability of Intestinal Organoids Enables
Robust Morphogenesis.” Nature Physics, vol. 21, 078104, Springer Nature,
2025, doi:10.1038/s41567-025-02792-1.
short: S. Xue, Q. Yang, P. Liberali, E.B. Hannezo, Nature Physics 21 (2025).
corr_author: '1'
date_created: 2025-03-09T23:01:28Z
date_published: 2025-02-28T00:00:00Z
date_updated: 2025-09-30T10:47:36Z
day: '28'
ddc:
- '530'
department:
- _id: EdHa
doi: 10.1038/s41567-025-02792-1
ec_funded: 1
external_id:
arxiv:
- '2403.19900'
isi:
- '001434072800001'
pmid:
- '40248571'
file:
- access_level: open_access
checksum: fb5e59be145b95f9851d3d7c9dbb85e6
content_type: application/pdf
creator: dernst
date_created: 2025-08-05T12:12:03Z
date_updated: 2025-08-05T12:12:03Z
file_id: '20129'
file_name: 2025_NaturePhysics_Xue.pdf
file_size: 16302436
relation: main_file
success: 1
file_date_updated: 2025-08-05T12:12:03Z
fulldoi: https://doi.org/10.1038/s41567-025-02792-1
has_accepted_license: '1'
intvolume: ' 21'
isi: 1
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 05943252-7A3F-11EA-A408-12923DDC885E
call_identifier: H2020
grant_number: '851288'
name: Design Principles of Branching Morphogenesis
- _id: 268294B6-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P31639
name: Active mechano-chemical description of the cell cytoskeleton
publication: Nature Physics
publication_identifier:
eissn:
- 1745-2481
issn:
- 1745-2473
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mechanochemical bistability of intestinal organoids enables robust morphogenesis
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 21
year: '2025'
...
---
OA_type: closed access
_id: '19374'
abstract:
- lang: eng
text: In the present study, the new ternary rare earth intermetallic compound PrNi6Si6
has been investigated. This work completes the study of the RNi6Si6 series (R = rare
earth). While the RNi6Si6 compounds for R = La and Ce adopt the CeNi6Si6-type
(tP52, P4/nbm, No. 125), surprisingly PrNi6Si6 crystallizes in the YNi6Si6 prototype
(tP52, P − 4b2, No. 117) as do all the heavier lanthanides (but Lu). The YNi6Si6-type
and its homolog CeNi6Si6 are two tetragonal ordered derivative of the cubic NaZn13-type
structure. Lattice parameters for PrNi6Si6 are a = 7.7846(1) Å, c = 11.2144(1)
Å, with a unit cell volume, Vobs = 679.585(5) Å3. The temperature dependence of
the inverse magnetic susceptibility χ−1(T) follows the Curie–Weiss law, with calculated
values of the effective magnetic moment (µeff) and Weiss temperature (Θpm) of
3.55 μB and − 4.5 K, respectively. While the observed µeff is very close to the
theoretical value of 3.58 µB for the free Pr3+ ions, a negative value of the Weiss
temperature suggests antiferromagnetic interactions in PrNi6Si6. Magnetization
measurements confirm that PrNi₆Si₆ orders antiferromagnetically (AFM) below a
Néel temperature (TN) of 9 K. The Ni atoms contribute negligibly to the magnetic
properties of this phase. The specific heat of PrNi₆Si₆ is approximately 0.42
J K − 1 g − 1. Measurements of electric and thermal transport reveal that PrNi₆Si₆
exhibits metallic behavior across a wide temperature range of 2–900 K, accompanied
by a relatively low thermal conductivity of around 6 W K − 1 m − 1 at room temperature.
Such properties, together with its high-temperature refractory behavior, make
PrNi₆Si₆ worthy of consideration in technological applications where fairly good
electrical conductivity should be accompanied by a limited thermal conductivity.
article_number: '100051'
article_processing_charge: No
article_type: original
author:
- first_name: Saurabh
full_name: Singh, Saurabh
id: 12d625da-9cb3-11ed-9667-af09d37d3f0a
last_name: Singh
orcid: 0000-0003-2209-5269
- first_name: A.
full_name: Provino, A.
last_name: Provino
- first_name: I.
full_name: Pallecchi, I.
last_name: Pallecchi
- first_name: F.
full_name: Caglieris, F.
last_name: Caglieris
- first_name: M.
full_name: Mödlinger, M.
last_name: Mödlinger
- first_name: P.
full_name: Mele, P.
last_name: Mele
- first_name: G.
full_name: Latronico, G.
last_name: Latronico
- first_name: T.
full_name: Takeuchi, T.
last_name: Takeuchi
- first_name: P.
full_name: Manfrinetti, P.
last_name: Manfrinetti
citation:
ama: 'Singh S, Provino A, Pallecchi I, et al. The new PrNi6Si6 intermetallic: From
crystal structure to thermal and electrical transport properties across a wide
temperature range (2–900 K). Journal of Materials Science. 2025;60. doi:10.1007/s10853-024-10582-y'
apa: 'Singh, S., Provino, A., Pallecchi, I., Caglieris, F., Mödlinger, M., Mele,
P., … Manfrinetti, P. (2025). The new PrNi6Si6 intermetallic: From crystal structure
to thermal and electrical transport properties across a wide temperature range
(2–900 K). Journal of Materials Science. Springer Nature. https://doi.org/10.1007/s10853-024-10582-y'
chicago: 'Singh, Saurabh, A. Provino, I. Pallecchi, F. Caglieris, M. Mödlinger,
P. Mele, G. Latronico, T. Takeuchi, and P. Manfrinetti. “The New PrNi6Si6 Intermetallic:
From Crystal Structure to Thermal and Electrical Transport Properties across a
Wide Temperature Range (2–900 K).” Journal of Materials Science. Springer
Nature, 2025. https://doi.org/10.1007/s10853-024-10582-y.'
ieee: 'S. Singh et al., “The new PrNi6Si6 intermetallic: From crystal structure
to thermal and electrical transport properties across a wide temperature range
(2–900 K),” Journal of Materials Science, vol. 60. Springer Nature, 2025.'
ista: 'Singh S, Provino A, Pallecchi I, Caglieris F, Mödlinger M, Mele P, Latronico
G, Takeuchi T, Manfrinetti P. 2025. The new PrNi6Si6 intermetallic: From crystal
structure to thermal and electrical transport properties across a wide temperature
range (2–900 K). Journal of Materials Science. 60, 100051.'
mla: 'Singh, Saurabh, et al. “The New PrNi6Si6 Intermetallic: From Crystal Structure
to Thermal and Electrical Transport Properties across a Wide Temperature Range
(2–900 K).” Journal of Materials Science, vol. 60, 100051, Springer Nature,
2025, doi:10.1007/s10853-024-10582-y.'
short: S. Singh, A. Provino, I. Pallecchi, F. Caglieris, M. Mödlinger, P. Mele,
G. Latronico, T. Takeuchi, P. Manfrinetti, Journal of Materials Science 60 (2025).
date_created: 2025-03-09T23:01:29Z
date_published: 2025-02-08T00:00:00Z
date_updated: 2025-03-10T06:53:16Z
day: '08'
department:
- _id: MaIb
doi: 10.1007/s10853-024-10582-y
fulldoi: https://doi.org/10.1007/s10853-024-10582-y
intvolume: ' 60'
language:
- iso: eng
month: '02'
oa_version: None
publication: Journal of Materials Science
publication_identifier:
eissn:
- 1573-4803
issn:
- 0022-2461
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The new PrNi6Si6 intermetallic: From crystal structure to thermal and electrical
transport properties across a wide temperature range (2–900 K)'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 60
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '19375'
abstract:
- lang: eng
text: "Despite the advances in probabilistic model checking, the scalability of
the verification methods remains limited. In particular, the state space often
becomes extremely large when instantiating parameterized Markov decision processes
(MDPs) even with moderate values. Synthesizing policies for such huge MDPs is
beyond the reach of available tools. We propose a learning-based approach to obtain
a reasonable policy for such huge MDPs.\r\n\r\nThe idea is to generalize optimal
policies obtained by model-checking small instances to larger ones using decision-tree
learning. Consequently, our method bypasses the need for explicit state-space
exploration of large models, providing a practical solution to the state-space
explosion problem. We demonstrate the efficacy of our approach by performing extensive
experimentation on the relevant models from the quantitative verification benchmark
set. The experimental results indicate that our policies perform well, even when
the size of the model is orders of magnitude beyond the reach of state-of-the-art
analysis tools."
acknowledgement: This research was funded in part by the DFG project 427755713 GOPro,
the DFG GRK 2428 (ConVeY), the MUNI Award in Science and Humanities (MUNI/I/1757/2021)
of the Grant Agency of Masaryk University, and the EU under MSCA grant agreement
101034413 (IST-BRIDGE).
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Muqsit
full_name: Azeem, Muqsit
last_name: Azeem
- first_name: Debraj
full_name: Chakraborty, Debraj
last_name: Chakraborty
- first_name: Sudeep
full_name: Kanav, Sudeep
last_name: Kanav
- first_name: Jan
full_name: Kretinsky, Jan
id: 44CEF464-F248-11E8-B48F-1D18A9856A87
last_name: Kretinsky
orcid: 0000-0002-8122-2881
- first_name: Mohammadsadegh
full_name: Mohagheghi, Mohammadsadegh
last_name: Mohagheghi
- first_name: Stefanie
full_name: Mohr, Stefanie
last_name: Mohr
- first_name: Maximilian
full_name: Weininger, Maximilian
id: 02ab0197-cc70-11ed-ab61-918e71f56881
last_name: Weininger
citation:
ama: 'Azeem M, Chakraborty D, Kanav S, et al. 1–2–3–Go! Policy synthesis for parameterized
Markov decision processes via decision-tree learning and generalization. In: 26th
International Conference on Verification, Model Checking, and Abstract Interpretation.
Vol 15530. Springer Nature; 2025:97-120. doi:10.1007/978-3-031-82703-7_5'
apa: 'Azeem, M., Chakraborty, D., Kanav, S., Kretinsky, J., Mohagheghi, M., Mohr,
S., & Weininger, M. (2025). 1–2–3–Go! Policy synthesis for parameterized Markov
decision processes via decision-tree learning and generalization. In 26th International
Conference on Verification, Model Checking, and Abstract Interpretation (Vol.
15530, pp. 97–120). Denver, CO, United States: Springer Nature. https://doi.org/10.1007/978-3-031-82703-7_5'
chicago: Azeem, Muqsit, Debraj Chakraborty, Sudeep Kanav, Jan Kretinsky, Mohammadsadegh
Mohagheghi, Stefanie Mohr, and Maximilian Weininger. “1–2–3–Go! Policy Synthesis
for Parameterized Markov Decision Processes via Decision-Tree Learning and Generalization.”
In 26th International Conference on Verification, Model Checking, and Abstract
Interpretation, 15530:97–120. Springer Nature, 2025. https://doi.org/10.1007/978-3-031-82703-7_5.
ieee: M. Azeem et al., “1–2–3–Go! Policy synthesis for parameterized Markov
decision processes via decision-tree learning and generalization,” in 26th
International Conference on Verification, Model Checking, and Abstract Interpretation,
Denver, CO, United States, 2025, vol. 15530, pp. 97–120.
ista: 'Azeem M, Chakraborty D, Kanav S, Kretinsky J, Mohagheghi M, Mohr S, Weininger
M. 2025. 1–2–3–Go! Policy synthesis for parameterized Markov decision processes
via decision-tree learning and generalization. 26th International Conference on
Verification, Model Checking, and Abstract Interpretation. VMCAI: Verification,
Model Checking, and Abstract Interpretation, LNCS, vol. 15530, 97–120.'
mla: Azeem, Muqsit, et al. “1–2–3–Go! Policy Synthesis for Parameterized Markov
Decision Processes via Decision-Tree Learning and Generalization.” 26th International
Conference on Verification, Model Checking, and Abstract Interpretation, vol.
15530, Springer Nature, 2025, pp. 97–120, doi:10.1007/978-3-031-82703-7_5.
short: M. Azeem, D. Chakraborty, S. Kanav, J. Kretinsky, M. Mohagheghi, S. Mohr,
M. Weininger, in:, 26th International Conference on Verification, Model Checking,
and Abstract Interpretation, Springer Nature, 2025, pp. 97–120.
conference:
end_date: 2025-01-21
location: Denver, CO, United States
name: 'VMCAI: Verification, Model Checking, and Abstract Interpretation'
start_date: 2025-01-20
date_created: 2025-03-09T23:01:29Z
date_published: 2025-01-23T00:00:00Z
date_updated: 2025-09-30T10:46:54Z
day: '23'
department:
- _id: KrCh
doi: 10.1007/978-3-031-82703-7_5
ec_funded: 1
external_id:
arxiv:
- '2410.18293'
isi:
- '001446577100005'
fulldoi: https://doi.org/10.1007/978-3-031-82703-7_5
intvolume: ' 15530'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2410.18293
month: '01'
oa: 1
oa_version: Preprint
page: 97-120
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
publication: 26th International Conference on Verification, Model Checking, and Abstract
Interpretation
publication_identifier:
eissn:
- 1611-3349
isbn:
- '9783031827020'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: 1–2–3–Go! Policy synthesis for parameterized Markov decision processes via decision-tree
learning and generalization
type: conference
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 15530
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '19402'
abstract:
- lang: eng
text: Recent advances in the field of bottom-up synthetic biology have led to the
development of synthetic cells that mimic some features of real cells, such as
division, protein synthesis, or DNA replication. Larger assemblies of synthetic
cells may be used to form prototissues. However, existing prototissues are limited
by their relatively small lateral dimensions or their lack of remodeling ability.
Here, we introduce a lipid-based tissue mimetic that can be easily prepared and
functionalized, consisting of a millimeter-sized “lipid-foam” with individual
micrometer-sized compartments bound by lipid bilayers. We characterize the structural
and mechanical properties of the lipid-foam tissue mimetic, and we demonstrate
self-healing capabilities enabled by the fluidity of the lipid bilayers. Upon
inclusion of bacteria in the tissue compartments, we observe that the tissue mimetic
exhibits network-wide tension fluctuations driven by membrane tension generation
by the swimming bacteria. Active tension fluctuations facilitate the fluidization
and reorganization of the prototissue, providing a versatile platform for understanding
and mimicking biological tissues.
acknowledgement: "This research was supported in part by the National Science Foundation
under Grant No. 1844336 (J.S.), 2239567 (A.P), and MRSEC DMR-2308691 (A.G., N.P.K.)
and the National Institutes of Health under Grant No. 1R35GM147170-01 (A.P). J.S.
thanks Reinhard Lipowsky for discussions on stability of foams.\r\nOpen Access funding
enabled and organized by Projekt DEAL."
article_number: '2026'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Andre A.
full_name: Gu, Andre A.
last_name: Gu
- first_name: Mehmet C
full_name: Ucar, Mehmet C
id: 50B2A802-6007-11E9-A42B-EB23E6697425
last_name: Ucar
orcid: 0000-0003-0506-4217
- first_name: Peter
full_name: Tran, Peter
last_name: Tran
- first_name: Arthur
full_name: Prindle, Arthur
last_name: Prindle
- first_name: Neha P.
full_name: Kamat, Neha P.
last_name: Kamat
- first_name: Jan
full_name: Steinkühler, Jan
last_name: Steinkühler
citation:
ama: Gu AA, Ucar MC, Tran P, Prindle A, Kamat NP, Steinkühler J. Remodeling of lipid-foam
prototissues by network-wide tension fluctuations induced by active particles.
Nature Communications. 2025;16. doi:10.1038/s41467-025-57178-x
apa: Gu, A. A., Ucar, M. C., Tran, P., Prindle, A., Kamat, N. P., & Steinkühler,
J. (2025). Remodeling of lipid-foam prototissues by network-wide tension fluctuations
induced by active particles. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-025-57178-x
chicago: Gu, Andre A., Mehmet C Ucar, Peter Tran, Arthur Prindle, Neha P. Kamat,
and Jan Steinkühler. “Remodeling of Lipid-Foam Prototissues by Network-Wide Tension
Fluctuations Induced by Active Particles.” Nature Communications. Springer
Nature, 2025. https://doi.org/10.1038/s41467-025-57178-x.
ieee: A. A. Gu, M. C. Ucar, P. Tran, A. Prindle, N. P. Kamat, and J. Steinkühler,
“Remodeling of lipid-foam prototissues by network-wide tension fluctuations induced
by active particles,” Nature Communications, vol. 16. Springer Nature,
2025.
ista: Gu AA, Ucar MC, Tran P, Prindle A, Kamat NP, Steinkühler J. 2025. Remodeling
of lipid-foam prototissues by network-wide tension fluctuations induced by active
particles. Nature Communications. 16, 2026.
mla: Gu, Andre A., et al. “Remodeling of Lipid-Foam Prototissues by Network-Wide
Tension Fluctuations Induced by Active Particles.” Nature Communications,
vol. 16, 2026, Springer Nature, 2025, doi:10.1038/s41467-025-57178-x.
short: A.A. Gu, M.C. Ucar, P. Tran, A. Prindle, N.P. Kamat, J. Steinkühler, Nature
Communications 16 (2025).
date_created: 2025-03-16T23:01:23Z
date_published: 2025-02-27T00:00:00Z
date_updated: 2025-09-30T10:59:30Z
day: '27'
ddc:
- '570'
department:
- _id: EdHa
doi: 10.1038/s41467-025-57178-x
external_id:
isi:
- '001435269000002'
pmid:
- '40016255'
file:
- access_level: open_access
checksum: 3bbae9b470c639005815342a39e96918
content_type: application/pdf
creator: dernst
date_created: 2025-03-17T09:43:27Z
date_updated: 2025-03-17T09:43:27Z
file_id: '19411'
file_name: 2025_NatureComm_Gu.pdf
file_size: 2260791
relation: main_file
success: 1
file_date_updated: 2025-03-17T09:43:27Z
fulldoi: https://doi.org/10.1038/s41467-025-57178-x
has_accepted_license: '1'
intvolume: ' 16'
isi: 1
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nature Communications
publication_identifier:
eissn:
- 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Remodeling of lipid-foam prototissues by network-wide tension fluctuations
induced by active particles
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 16
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '19403'
abstract:
- lang: eng
text: We study the BCS critical temperature on half-spaces in dimensions d =1, 2,
3 with Dirichlet or Neumann boundary conditions. We prove that the critical temperature
on a half-space is strictly higher than on Rd, at least at weak coupling in d
= 1, 2 and weak coupling and small chemical potential in d = 3. Furthermore, we
show that the relative shift in critical temperature vanishes in the weak coupling
limit.
acknowledgement: Open access funding provided by Institute of Science and Technology
(IST Austria). Financial support by the Austrian Science Fund (FWF) through project
number I 6427-N (as part of the SFB/TRR 352) is gratefully acknowledged.
article_number: '20'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Barbara
full_name: Roos, Barbara
id: 5DA90512-D80F-11E9-8994-2E2EE6697425
last_name: Roos
orcid: 0000-0002-9071-5880
- first_name: Robert
full_name: Seiringer, Robert
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Roos B, Seiringer R. BCS critical temperature on half-spaces. Archive for
Rational Mechanics and Analysis. 2025;249. doi:10.1007/s00205-025-02088-x
apa: Roos, B., & Seiringer, R. (2025). BCS critical temperature on half-spaces.
Archive for Rational Mechanics and Analysis. Springer Nature. https://doi.org/10.1007/s00205-025-02088-x
chicago: Roos, Barbara, and Robert Seiringer. “BCS Critical Temperature on Half-Spaces.”
Archive for Rational Mechanics and Analysis. Springer Nature, 2025. https://doi.org/10.1007/s00205-025-02088-x.
ieee: B. Roos and R. Seiringer, “BCS critical temperature on half-spaces,” Archive
for Rational Mechanics and Analysis, vol. 249. Springer Nature, 2025.
ista: Roos B, Seiringer R. 2025. BCS critical temperature on half-spaces. Archive
for Rational Mechanics and Analysis. 249, 20.
mla: Roos, Barbara, and Robert Seiringer. “BCS Critical Temperature on Half-Spaces.”
Archive for Rational Mechanics and Analysis, vol. 249, 20, Springer Nature,
2025, doi:10.1007/s00205-025-02088-x.
short: B. Roos, R. Seiringer, Archive for Rational Mechanics and Analysis 249 (2025).
corr_author: '1'
date_created: 2025-03-16T23:01:24Z
date_published: 2025-04-01T00:00:00Z
date_updated: 2025-09-30T11:01:08Z
day: '01'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1007/s00205-025-02088-x
external_id:
arxiv:
- '2306.05824'
isi:
- '001435380100001'
pmid:
- '40041541'
file:
- access_level: open_access
checksum: 66803fb63a57987eb4f13ee2949bea77
content_type: application/pdf
creator: dernst
date_created: 2025-03-17T10:07:45Z
date_updated: 2025-03-17T10:07:45Z
file_id: '19412'
file_name: 2025_ArchiveRatMech_Roos.pdf
file_size: 1224282
relation: main_file
success: 1
file_date_updated: 2025-03-17T10:07:45Z
fulldoi: https://doi.org/10.1007/s00205-025-02088-x
has_accepted_license: '1'
intvolume: ' 249'
isi: 1
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: bda63fe5-d553-11ed-ba76-a16e3d2f256b
grant_number: I06427
name: Mathematical Challenges in BCS Theory of Superconductivity
publication: Archive for Rational Mechanics and Analysis
publication_identifier:
eissn:
- 1432-0673
issn:
- 0003-9527
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: BCS critical temperature on half-spaces
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 249
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '19404'
abstract:
- lang: eng
text: Cell migration is a fundamental process during embryonic development. Most
studies in vivo have focused on the migration of cells using the extracellular
matrix (ECM) as their substrate for migration. In contrast, much less is known
about how cells migrate on other cells, as found in early embryos when the ECM
has not yet formed. Here, we show that lateral mesendoderm (LME) cells in the
early zebrafish gastrula use the ectoderm as their substrate for migration. We
show that the lateral ectoderm is permissive for the animal-pole-directed migration
of LME cells, while the ectoderm at the animal pole halts it. These differences
in permissiveness depend on the lateral ectoderm being more cohesive than the
animal ectoderm, a property controlled by bone morphogenetic protein (BMP) signaling
within the ectoderm. Collectively, these findings identify ectoderm tissue cohesion
as one critical factor in regulating LME migration during zebrafish gastrulation.
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
- _id: ScienComp
acknowledgement: 'We are grateful to the colleagues who contributed to this work with
discussions, technical advice, and feedback on the manuscript: Irene Steccari, David
Labrousse Arias and the other members of the Heisenberg lab, Nicole Amberg, Florian
Pauler, Nicoletta Petridou, Elena Scarpa, and Edouard Hannezo. We also thank the
Imaging and Optics Facility, the Life Science Facility, and the Scientific Computing
Unit at ISTA for support. The Next Generation Sequencing Facility at Vienna BioCenter
Core Facilities performed the RNA-seq for animal and lateral ectoderm. D.B.B. was
supported by the NOMIS Foundation as a NOMIS Fellow and by an EMBO Postdoctoral
Fellowship (ALTF 343-2022). S. Tavano was supported by an EMBO Postdoctoral Fellowship
(ALTF 1159-2018).'
article_number: '115387'
article_processing_charge: Yes
article_type: original
author:
- first_name: Ste
full_name: Tavano, Ste
id: 2F162F0C-F248-11E8-B48F-1D18A9856A87
last_name: Tavano
orcid: 0000-0001-9970-7804
- first_name: David
full_name: Brückner, David
id: e1e86031-6537-11eb-953a-f7ab92be508d
last_name: Brückner
orcid: 0000-0001-7205-2975
- first_name: Saren
full_name: Tasciyan, Saren
id: 4323B49C-F248-11E8-B48F-1D18A9856A87
last_name: Tasciyan
orcid: 0000-0003-1671-393X
- first_name: Xin
full_name: Tong, Xin
id: 50F65CDC-AA30-11E9-A72B-8A12E6697425
last_name: Tong
- first_name: Roland
full_name: Kardos, Roland
id: 4039350E-F248-11E8-B48F-1D18A9856A87
last_name: Kardos
- first_name: Alexandra
full_name: Schauer, Alexandra
id: 30A536BA-F248-11E8-B48F-1D18A9856A87
last_name: Schauer
orcid: 0000-0001-7659-9142
- first_name: Robert
full_name: Hauschild, Robert
id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
last_name: Hauschild
orcid: 0000-0001-9843-3522
- first_name: Carl-Philipp J
full_name: Heisenberg, Carl-Philipp J
id: 39427864-F248-11E8-B48F-1D18A9856A87
last_name: Heisenberg
orcid: 0000-0002-0912-4566
citation:
ama: Tavano S, Brückner D, Tasciyan S, et al. BMP-dependent patterning of ectoderm
tissue material properties modulates lateral mesendoderm cell migration during
early zebrafish gastrulation. Cell Reports. 2025;44(3). doi:10.1016/j.celrep.2025.115387
apa: Tavano, S., Brückner, D., Tasciyan, S., Tong, X., Kardos, R., Schauer, A.,
… Heisenberg, C.-P. J. (2025). BMP-dependent patterning of ectoderm tissue material
properties modulates lateral mesendoderm cell migration during early zebrafish
gastrulation. Cell Reports. Elsevier. https://doi.org/10.1016/j.celrep.2025.115387
chicago: Tavano, Ste, David Brückner, Saren Tasciyan, Xin Tong, Roland Kardos, Alexandra
Schauer, Robert Hauschild, and Carl-Philipp J Heisenberg. “BMP-Dependent Patterning
of Ectoderm Tissue Material Properties Modulates Lateral Mesendoderm Cell Migration
during Early Zebrafish Gastrulation.” Cell Reports. Elsevier, 2025. https://doi.org/10.1016/j.celrep.2025.115387.
ieee: S. Tavano et al., “BMP-dependent patterning of ectoderm tissue material
properties modulates lateral mesendoderm cell migration during early zebrafish
gastrulation,” Cell Reports, vol. 44, no. 3. Elsevier, 2025.
ista: Tavano S, Brückner D, Tasciyan S, Tong X, Kardos R, Schauer A, Hauschild R,
Heisenberg C-PJ. 2025. BMP-dependent patterning of ectoderm tissue material properties
modulates lateral mesendoderm cell migration during early zebrafish gastrulation.
Cell Reports. 44(3), 115387.
mla: Tavano, Ste, et al. “BMP-Dependent Patterning of Ectoderm Tissue Material Properties
Modulates Lateral Mesendoderm Cell Migration during Early Zebrafish Gastrulation.”
Cell Reports, vol. 44, no. 3, 115387, Elsevier, 2025, doi:10.1016/j.celrep.2025.115387.
short: S. Tavano, D. Brückner, S. Tasciyan, X. Tong, R. Kardos, A. Schauer, R. Hauschild,
C.-P.J. Heisenberg, Cell Reports 44 (2025).
corr_author: '1'
date_created: 2025-03-16T23:01:24Z
date_published: 2025-03-25T00:00:00Z
date_updated: 2025-10-22T07:00:04Z
day: '25'
ddc:
- '570'
department:
- _id: CaHe
- _id: EdHa
- _id: MiSi
- _id: Bio
doi: 10.1016/j.celrep.2025.115387
external_id:
isi:
- '001443652700001'
pmid:
- '40057955'
file:
- access_level: open_access
checksum: 57e05dd1598c807af0afdb32cec039d3
content_type: application/pdf
creator: dernst
date_created: 2025-03-17T10:26:54Z
date_updated: 2025-03-17T10:26:54Z
file_id: '19413'
file_name: 2025_CellReports_Tavano.pdf
file_size: 9067797
relation: main_file
success: 1
file_date_updated: 2025-03-17T10:26:54Z
fulldoi: https://doi.org/10.1016/j.celrep.2025.115387
has_accepted_license: '1'
intvolume: ' 44'
isi: 1
issue: '3'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 34e2a5b5-11ca-11ed-8bc3-b2265616ef0b
grant_number: ALTF 343-2022
name: A mechano-chemical theory for stem cell fate decisions in organoid development
- _id: 269CD5C4-B435-11E9-9278-68D0E5697425
grant_number: ALTF 1159-2018
name: 'Mechanosensation in cell migration: the role of friction forces in cell polarization
and directed migration'
publication: Cell Reports
publication_identifier:
eissn:
- 2211-1247
issn:
- 2639-1856
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: BMP-dependent patterning of ectoderm tissue material properties modulates lateral
mesendoderm cell migration during early zebrafish gastrulation
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 44
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '19405'
abstract:
- lang: eng
text: "In the third APOKASC catalog, we present data for the complete sample of
15,808 evolved stars with APOGEE spectroscopic parameters and Kepler asteroseismology.
We used 10 independent asteroseismic analysis techniques and anchor our system
on fundamental radii derived from Gaia L and spectroscopic Teff. We provide evolutionary
state, asteroseismic surface gravity, mass, radius, age, and the data used to
derive them for 12,418 stars. This includes 10,036 exceptionally precise measurements,
with median fractional uncertainties in \r\nvmax, Δν, mass, radius, and age of
0.6%, 0.6%, 3.8%, 1.8%, and 11.1%, respectively. We provide more limited data
for 1624 additional stars that either have lower-quality data or are outside of
our primary calibration domain. Using lower red giant branch (RGB) stars, we find
a median age for the chemical thick disk of 9.14 ± 0.05(ran) ± 0.9(sys) Gyr with
an age dispersion of 1.1 Gyr, consistent with our error model. We calibrate our
red clump (RC) mass loss to derive an age consistent with the lower RGB and provide
asymptotic GB and RGB ages for luminous stars. We also find a sharp upper-age
boundary in the chemical thin disk. We find that scaling relations are precise
and accurate on the lower RGB and RC, but they become more model dependent for
more luminous giants and break down at the tip of the RGB. We recommend the use
of multiple methods, calibration to a fundamental scale, and the use of stellar
models to interpret frequency spacings."
acknowledgement: "We thank the anonymous referee for providing constructive comments
that improved the paper. This paper includes data collected by the Kepler mission
and obtained from the MAST data archive at the Space Telescope Science Institute
(STScI). Funding for the Kepler mission is provided by the NASA Science Mission
Directorate. STScI is operated by the Association of Universities for Research in
Astronomy, Inc., under NASA contract NAS 5-26555. M.H.P. acknowledges support from
NASA grants 80NSSC24K0637 and 80NSSC18K1582. M.H.P., J.T., and P.M.F. acknowledge
that part of this work was performed at the Aspen Center for Physics, which is supported
by National Science Foundation grant PHY-1607611. M.H.P. acknowledges support from
the Fundación Occident and the Instituto de Astrofísica de Canarias under the Visiting
Researcher Programme 2022-2025 agreed between both institutions. A.S. acknowledges
support by the Spanish Ministry of Science, Innovation and Universities through
the grant PID2023-149918NB-I00 and the program Unidad de Excelencia Marìa de Maeztu
CEX2020-001058-M, and by Generalitat de Catalunya through grant 2021-SGR-1526. S.B.
acknowledges NSF grant AST-2205026. P.G.B. acknowledges support by the Spanish Ministry
of Science and Innovation with the Ramón y Cajal fellowship Nos. RYC-2021-033137-I
and MRR4032204. D.S. is supported by the Australian Research Council (DP190100666).
P.G.B., D.G.R., and R.A.G. acknowledge support from the Spanish Ministry of Science
and Innovation from grant No. PID2023-146453NB-100 (PLAtoSOnG). M.V. acknowledges
support from NASA grant 80NSSC18K1582 and funding from the European Research Council
(ERC) under the European Union's Horizon 2020 research and innovation program (grant
agreement No. 101019653). T.C.B. acknowledges partial support for this work from
grant PHY 14-30152; Physics Frontier Center/JINA Center for the Evolution of the
Elements (JINA-CEE), and OISE-1927130: The International Research Network for Nuclear
Astrophysics (IReNA), awarded by the US National Science Foundation. The research
leading to the presented results has received funding from the ERC Consolidator
Grant DipolarSound (grant agreement No. 101000296). P.F. and T.S. acknowledges support
from the National Science Foundation Astronomy and Astrophysics grants AST-1715662
and AST-2206541. S.M. acknowledges support by the Spanish Ministry of Science and
Innovation with the Ramon y Cajal fellowship Nos. RYC-2015-17697, PID2019-107061GB-C66,
and PID2023-149439NB-C41, and through AEI under the Severo Ochoa Centres of Excellence
Programme 2020–2023 (CEX2019-000920-S). S.M. and D.G.R. acknowledge support from
the Spanish Ministry of Science and Innovation (MICINN) from grant No. PID2019-107187GB-I00.
D.G.R. acknowledges support from the Spanish Ministry of Science and Innovation
(MICINN) with the Juan de la Cierva program under contract JDC2022-049054-I. L.B.
gratefully acknowledges support from the European Research Council (ERC) under the
Horizon Europe program (Calcifer; Starting grant agreement No. 101165631). A.R.G.S.
acknowledges the support from the FCT through national funds and FEDER through COMPETE2020
(UIDB/04434/2020, UIDP/04434/2020, and 2022.03993.PTDC) and the support from the
FCT through work contract No. 2020.02480.CEECIND/CP1631/CT0001.\r\n\r\nFunding for
the Sloan Digital Sky Survey IV has been provided by the Alfred P. Sloan Foundation,
the U.S. Department of Energy Office of Science, and the Participating Institutions.
SDSS acknowledges support and resources from the Center for High-Performance Computing
at the University of Utah. The SDSS website is www.sdss4.org.\r\n\r\nSDSS is managed
by the Astrophysical Research Consortium for the Participating Institutions of the
SDSS Collaboration including the Brazilian Participation Group, the Carnegie Institution
for Science, Carnegie Mellon University, Center for Astrophysics—Harvard & Smithsonian
(CfA), the Chilean Participation Group, the French Participation Group, Instituto
de Astrofísica de Canarias, The Johns Hopkins University, Kavli Institute for the
Physics and Mathematics of the Universe (IPMU)/University of Tokyo, the Korean Participation
Group, Lawrence Berkeley National Laboratory, Leibniz Institut für Astrophysik Potsdam
(AIP), Max-Planck-Institut für Astronomie (MPIA Heidelberg), Max-Planck-Institut
für Astrophysik (MPA Garching), Max-Planck-Institut für Extraterrestrische Physik
(MPE), National Astronomical Observatories of China, New Mexico State University,
New York University, University of Notre Dame, Observatório Nacional/MCTI, The Ohio
State University, Pennsylvania State University, Shanghai Astronomical Observatory,
United Kingdom Participation Group, Universidad Nacional Autónoma de México, University
of Arizona, University of Colorado Boulder, University of Oxford, University of
Portsmouth, University of Utah, University of Virginia, University of Washington,
University of Wisconsin, Vanderbilt University, and Yale University."
article_number: '69'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Marc H.
full_name: Pinsonneault, Marc H.
last_name: Pinsonneault
- first_name: Joel C.
full_name: Zinn, Joel C.
last_name: Zinn
- first_name: Jamie
full_name: Tayar, Jamie
last_name: Tayar
- first_name: Aldo
full_name: Serenelli, Aldo
last_name: Serenelli
- first_name: Rafael A.
full_name: García, Rafael A.
last_name: García
- first_name: Savita
full_name: Mathur, Savita
last_name: Mathur
- first_name: Mathieu
full_name: Vrard, Mathieu
last_name: Vrard
- first_name: Yvonne P.
full_name: Elsworth, Yvonne P.
last_name: Elsworth
- first_name: Benoit
full_name: Mosser, Benoit
last_name: Mosser
- first_name: Dennis
full_name: Stello, Dennis
last_name: Stello
- first_name: Keaton J.
full_name: Bell, Keaton J.
last_name: Bell
- first_name: Lisa Annabelle
full_name: Bugnet, Lisa Annabelle
id: d9edb345-f866-11ec-9b37-d119b5234501
last_name: Bugnet
orcid: 0000-0003-0142-4000
- first_name: Enrico
full_name: Corsaro, Enrico
last_name: Corsaro
- first_name: Patrick
full_name: Gaulme, Patrick
last_name: Gaulme
- first_name: Saskia
full_name: Hekker, Saskia
last_name: Hekker
- first_name: Marc
full_name: Hon, Marc
last_name: Hon
- first_name: Daniel
full_name: Huber, Daniel
last_name: Huber
- first_name: Thomas
full_name: Kallinger, Thomas
last_name: Kallinger
- first_name: Kaili
full_name: Cao, Kaili
last_name: Cao
- first_name: Jennifer A.
full_name: Johnson, Jennifer A.
last_name: Johnson
- first_name: Bastien
full_name: Liagre, Bastien
last_name: Liagre
- first_name: Rachel A.
full_name: Patton, Rachel A.
last_name: Patton
- first_name: Ângela R.G.
full_name: Santos, Ângela R.G.
last_name: Santos
- first_name: Sarbani
full_name: Basu, Sarbani
last_name: Basu
- first_name: Paul G.
full_name: Beck, Paul G.
last_name: Beck
- first_name: Timothy C.
full_name: Beers, Timothy C.
last_name: Beers
- first_name: William J.
full_name: Chaplin, William J.
last_name: Chaplin
- first_name: Katia
full_name: Cunha, Katia
last_name: Cunha
- first_name: Peter M.
full_name: Frinchaboy, Peter M.
last_name: Frinchaboy
- first_name: Léo
full_name: Girardi, Léo
last_name: Girardi
- first_name: Diego
full_name: Godoy-Rivera, Diego
last_name: Godoy-Rivera
- first_name: Jon A.
full_name: Holtzman, Jon A.
last_name: Holtzman
- first_name: Henrik
full_name: Jönsson, Henrik
last_name: Jönsson
- first_name: Szabolcs
full_name: Mészáros, Szabolcs
last_name: Mészáros
- first_name: Claudia
full_name: Reyes, Claudia
last_name: Reyes
- first_name: Hans Walter
full_name: Rix, Hans Walter
last_name: Rix
- first_name: Matthew
full_name: Shetrone, Matthew
last_name: Shetrone
- first_name: Verne V.
full_name: Smith, Verne V.
last_name: Smith
- first_name: Taylor
full_name: Spoo, Taylor
last_name: Spoo
- first_name: Keivan G.
full_name: Stassun, Keivan G.
last_name: Stassun
- first_name: Ji
full_name: Wang, Ji
last_name: Wang
citation:
ama: 'Pinsonneault MH, Zinn JC, Tayar J, et al. APOKASC-3: The third joint spectroscopic
and asteroseismic catalog for evolved stars in the Kepler fields. Astrophysical
Journal, Supplement Series. 2025;276(2). doi:10.3847/1538-4365/ad9fef'
apa: 'Pinsonneault, M. H., Zinn, J. C., Tayar, J., Serenelli, A., García, R. A.,
Mathur, S., … Wang, J. (2025). APOKASC-3: The third joint spectroscopic and asteroseismic
catalog for evolved stars in the Kepler fields. Astrophysical Journal, Supplement
Series. IOP Publishing. https://doi.org/10.3847/1538-4365/ad9fef'
chicago: 'Pinsonneault, Marc H., Joel C. Zinn, Jamie Tayar, Aldo Serenelli, Rafael
A. García, Savita Mathur, Mathieu Vrard, et al. “APOKASC-3: The Third Joint Spectroscopic
and Asteroseismic Catalog for Evolved Stars in the Kepler Fields.” Astrophysical
Journal, Supplement Series. IOP Publishing, 2025. https://doi.org/10.3847/1538-4365/ad9fef.'
ieee: 'M. H. Pinsonneault et al., “APOKASC-3: The third joint spectroscopic
and asteroseismic catalog for evolved stars in the Kepler fields,” Astrophysical
Journal, Supplement Series, vol. 276, no. 2. IOP Publishing, 2025.'
ista: 'Pinsonneault MH, Zinn JC, Tayar J, Serenelli A, García RA, Mathur S, Vrard
M, Elsworth YP, Mosser B, Stello D, Bell KJ, Bugnet LA, Corsaro E, Gaulme P, Hekker
S, Hon M, Huber D, Kallinger T, Cao K, Johnson JA, Liagre B, Patton RA, Santos
ÂRG, Basu S, Beck PG, Beers TC, Chaplin WJ, Cunha K, Frinchaboy PM, Girardi L,
Godoy-Rivera D, Holtzman JA, Jönsson H, Mészáros S, Reyes C, Rix HW, Shetrone
M, Smith VV, Spoo T, Stassun KG, Wang J. 2025. APOKASC-3: The third joint spectroscopic
and asteroseismic catalog for evolved stars in the Kepler fields. Astrophysical
Journal, Supplement Series. 276(2), 69.'
mla: 'Pinsonneault, Marc H., et al. “APOKASC-3: The Third Joint Spectroscopic and
Asteroseismic Catalog for Evolved Stars in the Kepler Fields.” Astrophysical
Journal, Supplement Series, vol. 276, no. 2, 69, IOP Publishing, 2025, doi:10.3847/1538-4365/ad9fef.'
short: M.H. Pinsonneault, J.C. Zinn, J. Tayar, A. Serenelli, R.A. García, S. Mathur,
M. Vrard, Y.P. Elsworth, B. Mosser, D. Stello, K.J. Bell, L.A. Bugnet, E. Corsaro,
P. Gaulme, S. Hekker, M. Hon, D. Huber, T. Kallinger, K. Cao, J.A. Johnson, B.
Liagre, R.A. Patton, Â.R.G. Santos, S. Basu, P.G. Beck, T.C. Beers, W.J. Chaplin,
K. Cunha, P.M. Frinchaboy, L. Girardi, D. Godoy-Rivera, J.A. Holtzman, H. Jönsson,
S. Mészáros, C. Reyes, H.W. Rix, M. Shetrone, V.V. Smith, T. Spoo, K.G. Stassun,
J. Wang, Astrophysical Journal, Supplement Series 276 (2025).
date_created: 2025-03-16T23:01:24Z
date_published: 2025-02-01T00:00:00Z
date_updated: 2025-09-30T11:03:01Z
day: '01'
ddc:
- '520'
department:
- _id: LiBu
doi: 10.3847/1538-4365/ad9fef
external_id:
arxiv:
- '2410.00102'
isi:
- '001414132600001'
file:
- access_level: open_access
checksum: a01a6645c6cb0b5cc75490f3339a2244
content_type: application/pdf
creator: dernst
date_created: 2025-03-17T10:40:41Z
date_updated: 2025-03-17T10:40:41Z
file_id: '19414'
file_name: 2025_AstrophysicalJourSuppl_Pinsonneault.pdf
file_size: 4993506
relation: main_file
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file_date_updated: 2025-03-17T10:40:41Z
fulldoi: https://doi.org/10.3847/1538-4365/ad9fef
has_accepted_license: '1'
intvolume: ' 276'
isi: 1
issue: '2'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
publication: Astrophysical Journal, Supplement Series
publication_identifier:
issn:
- 0067-0049
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'APOKASC-3: The third joint spectroscopic and asteroseismic catalog for evolved
stars in the Kepler fields'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 276
year: '2025'
...
---
OA_type: closed access
_id: '19406'
abstract:
- lang: eng
text: "Polyploidization is a common occurrence in the evolutionary history of flowering
plants, significantly contributing to their adaptability and diversity. However,
the molecular mechanisms behind these adaptive advantages are not well understood.\r\nThrough
comprehensive phenotyping of diploid and tetraploid clones from Citrus and Poncirus
genera, we discovered that genome doubling significantly enhances salt stress
resilience. Epigenetic and transcriptomic analyses revealed that increased ethylene
production in the roots of tetraploid plants was associated with hypomethylation
and enhanced chromatin accessibility of the ACO1 gene. This increased ethylene
production activates the transcription of reactive oxygen species scavenging genes
and stress-related hormone biosynthesis genes. Consequently, tetraploid plants
exhibited superior root functionality under salt stress, maintaining improved
cytosolic K+/Na+ homeostasis.\r\nTo genetically validate the link between salt
stress resilience and ACO1 expression, we generated overexpression and knockout
lines, confirming the central role of ACO1 expression regulation following genome
doubling in salt stress resilience.\r\nOur work elucidates the molecular mechanisms
underlying the role of genome doubling in stress resilience. We also highlight
the importance of chromatin dynamics in fine-tuning ethylene gene expression and
activating salt stress resilience pathways, offering valuable insights into plant
adaptation and crop genome evolution."
acknowledgement: We thank Prof. Qi Xie from the Institute of Genetics and Development,
Chinese Academy of Sciences, for providing the YAO promoter-driven CRISPR/Cas9 vector,
our colleague Dr Robert M. Larkin from Huazhong Agricultural University, and Dr
Olivier Martin from IPS2 (INRAE, France) for critical reading of the manuscript.
This research was financially supported by grants from the National Key Research
& Development Program of China (2024YFD1200501), the National Natural Science Foundation
of China (32172525 and 32202432), the Foundation of Hubei Hongshan laboratory (2021hszd009),
the China Agricultural Research System (CARS-26) and the Department of Science and
Technology of Hubei Province (2022BBA0019). A. Bendahmane is funded by the ANR BioAdapt
(ANR-21-LCV3-0003), LabEx Saclay Plant Sciences (SPS) (ANR-10-LABX-40-SPS), and
the NectarGland ERC Project (101095736).
article_processing_charge: No
article_type: original
author:
- first_name: Xin
full_name: Song, Xin
last_name: Song
- first_name: Miao
full_name: Zhang, Miao
last_name: Zhang
- first_name: Ting Ting
full_name: Wang, Ting Ting
last_name: Wang
- first_name: Yao Yuan
full_name: Duan, Yao Yuan
last_name: Duan
- first_name: Jie
full_name: Ren, Jie
last_name: Ren
- first_name: Hu
full_name: Gao, Hu
last_name: Gao
- first_name: Yan Jie
full_name: Fan, Yan Jie
last_name: Fan
- first_name: Qiang Ming
full_name: Xia, Qiang Ming
last_name: Xia
- first_name: Hui Xiang
full_name: Cao, Hui Xiang
last_name: Cao
- first_name: Kai Dong
full_name: Xie, Kai Dong
last_name: Xie
- first_name: Xiao Meng
full_name: Wu, Xiao Meng
last_name: Wu
- first_name: Fei
full_name: Zhang, Fei
last_name: Zhang
- first_name: Si Qi
full_name: Zhang, Si Qi
last_name: Zhang
- first_name: Ying
full_name: Huang, Ying
id: 11b5bbff-8b61-11ed-b69e-d8ddd6bce951
last_name: Huang
- first_name: Adnane
full_name: Boualem, Adnane
last_name: Boualem
- first_name: Abdelhafid
full_name: Bendahmane, Abdelhafid
last_name: Bendahmane
- first_name: Feng Quan
full_name: Tan, Feng Quan
last_name: Tan
- first_name: Wen Wu
full_name: Guo, Wen Wu
last_name: Guo
citation:
ama: Song X, Zhang M, Wang TT, et al. Polyploidization leads to salt stress resilience
via ethylene signaling in citrus plants. New Phytologist. 2025;246(1):176-191.
doi:10.1111/nph.20428
apa: Song, X., Zhang, M., Wang, T. T., Duan, Y. Y., Ren, J., Gao, H., … Guo, W.
W. (2025). Polyploidization leads to salt stress resilience via ethylene signaling
in citrus plants. New Phytologist. Wiley. https://doi.org/10.1111/nph.20428
chicago: Song, Xin, Miao Zhang, Ting Ting Wang, Yao Yuan Duan, Jie Ren, Hu Gao,
Yan Jie Fan, et al. “Polyploidization Leads to Salt Stress Resilience via Ethylene
Signaling in Citrus Plants.” New Phytologist. Wiley, 2025. https://doi.org/10.1111/nph.20428.
ieee: X. Song et al., “Polyploidization leads to salt stress resilience via
ethylene signaling in citrus plants,” New Phytologist, vol. 246, no. 1.
Wiley, pp. 176–191, 2025.
ista: Song X, Zhang M, Wang TT, Duan YY, Ren J, Gao H, Fan YJ, Xia QM, Cao HX, Xie
KD, Wu XM, Zhang F, Zhang SQ, Huang Y, Boualem A, Bendahmane A, Tan FQ, Guo WW.
2025. Polyploidization leads to salt stress resilience via ethylene signaling
in citrus plants. New Phytologist. 246(1), 176–191.
mla: Song, Xin, et al. “Polyploidization Leads to Salt Stress Resilience via Ethylene
Signaling in Citrus Plants.” New Phytologist, vol. 246, no. 1, Wiley, 2025,
pp. 176–91, doi:10.1111/nph.20428.
short: X. Song, M. Zhang, T.T. Wang, Y.Y. Duan, J. Ren, H. Gao, Y.J. Fan, Q.M. Xia,
H.X. Cao, K.D. Xie, X.M. Wu, F. Zhang, S.Q. Zhang, Y. Huang, A. Boualem, A. Bendahmane,
F.Q. Tan, W.W. Guo, New Phytologist 246 (2025) 176–191.
date_created: 2025-03-16T23:01:25Z
date_published: 2025-04-01T00:00:00Z
date_updated: 2025-09-30T11:00:06Z
day: '01'
department:
- _id: XiFe
doi: 10.1111/nph.20428
external_id:
isi:
- '001424915600001'
pmid:
- '39969116'
fulldoi: https://doi.org/10.1111/nph.20428
intvolume: ' 246'
isi: 1
issue: '1'
language:
- iso: eng
month: '04'
oa_version: None
page: 176-191
pmid: 1
publication: New Phytologist
publication_identifier:
eissn:
- 1469-8137
issn:
- 0028-646X
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Polyploidization leads to salt stress resilience via ethylene signaling in
citrus plants
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 246
year: '2025'
...
---
OA_place: publisher
OA_type: gold
_id: '19409'
abstract:
- lang: eng
text: "This .zip file contains the data to reproduce the figures and supplementary
figures of \"Exchange anisotropies in microwave-driven singlet-triplet qubits\"
by Jaime Saez-Mollejo et al.\r\n"
acknowledged_ssus:
- _id: NanoFab
- _id: M-Shop
acknowledgement: "We thank A. Crippa for helpful discussions. This research was supported
by the Scientific Service Units of ISTA through resources provided by the MIBA Machine
Shop and the Nanofabrication facility. This research and related results were made
possible with the support of the NOMIS Foundation, the HORIZON-RIA 101069515 project
and the FWF Projects \r\nwith DOI:10.55776/F86 and DOI:10.55776/I5060. M.R.-R. acknowledges
support from the Netherlands Organization of\r\n scientific Research (NWO) under
Veni grant VI.Veni.212.223. The Research of S.B. and M.R.-R. was sponsored in part
by the Army Research Office and was accomplished under Award Number: W911NF-23-1-0110."
article_processing_charge: No
author:
- first_name: Jaime
full_name: Saez Mollejo, Jaime
id: e0390f72-f6e0-11ea-865d-862393336714
last_name: Saez Mollejo
citation:
ama: Saez Mollejo J. Exchange anisotropies in microwave-driven singlet-triplet qubits.
2025. doi:10.15479/AT:ISTA:19409
apa: Saez Mollejo, J. (2025). Exchange anisotropies in microwave-driven singlet-triplet
qubits. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:19409
chicago: Saez Mollejo, Jaime. “Exchange Anisotropies in Microwave-Driven Singlet-Triplet
Qubits.” Institute of Science and Technology Austria, 2025. https://doi.org/10.15479/AT:ISTA:19409.
ieee: J. Saez Mollejo, “Exchange anisotropies in microwave-driven singlet-triplet
qubits.” Institute of Science and Technology Austria, 2025.
ista: Saez Mollejo J. 2025. Exchange anisotropies in microwave-driven singlet-triplet
qubits, Institute of Science and Technology Austria, 10.15479/AT:ISTA:19409.
mla: Saez Mollejo, Jaime. Exchange Anisotropies in Microwave-Driven Singlet-Triplet
Qubits. Institute of Science and Technology Austria, 2025, doi:10.15479/AT:ISTA:19409.
short: J. Saez Mollejo, (2025).
contributor:
- first_name: Daniel
id: 4C473F58-F248-11E8-B48F-1D18A9856A87
last_name: Jirovec
orcid: 0000-0002-7197-4801
- first_name: Yona A
id: fe39122d-06bb-11ec-a33b-9e22b40e40a5
last_name: Schell
- first_name: Josip
id: 3F5D8856-F248-11E8-B48F-1D18A9856A87
last_name: Kukucka
- first_name: Stefano
last_name: Calcaterra
- first_name: 'Daniel '
last_name: Chrastina
- first_name: 'Giovanni '
last_name: Isella
- first_name: Maximilian
last_name: Rimbach-Russ
- first_name: Stefano
last_name: Bosco
- first_name: Georgios
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
orcid: 0000-0001-8342-202X
corr_author: '1'
date_created: 2025-03-17T08:57:09Z
date_published: 2025-03-17T00:00:00Z
date_updated: 2026-05-20T06:42:16Z
day: '17'
ddc:
- '530'
department:
- _id: GradSch
- _id: GeKa
doi: 10.15479/AT:ISTA:19409
file:
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checksum: 1f21c8ea2196776aae51cc3a5d00e00b
content_type: application/x-zip-compressed
creator: jsaezmol
date_created: 2025-03-17T08:48:09Z
date_updated: 2025-03-17T08:48:09Z
file_id: '19410'
file_name: AllDataPublished.zip
file_size: 21971911
relation: main_file
success: 1
file_date_updated: 2025-03-17T08:48:09Z
fulldoi: https://doi.org/10.15479/AT:ISTA:19409
has_accepted_license: '1'
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: 34c0acea-11ca-11ed-8bc3-8775e10fd452
grant_number: '101069515'
name: Integrated Germanium Quantum Technology
- _id: c0977eea-5a5b-11eb-8a69-a862db0cf4d1
grant_number: I05060
name: High impedance circuit quantum electrodynamics with hole spins
- _id: 34a66131-11ca-11ed-8bc3-a31681c6b03e
grant_number: F8606
name: 'Center for Correlated Quantum Materials and Solid State Quantum Systems:
Conventional and unconventional topological superconductors'
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '19424'
relation: used_in_publication
status: public
status: public
title: Exchange anisotropies in microwave-driven singlet-triplet qubits
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: publisher
OA_type: gold
_id: '19416'
abstract:
- lang: eng
text: 'Recently, Biagioli and Tompkins (2023, https://doi.org/10.1029/2022ms003231)
used a simple stochastic model to derive a dimensionless parameter to predict
convective self aggregation (SA) development, which was based on the derivation
of the maximum free convective distance ($d_{clr}$) expected in the pre-aggregated,
random state. Our goal is to test and further investigate this hypothesis, namely
that $d_{clr}$ can predict SA occurrence, using an ensemble of twenty-four distinct
combinations of horizontal mixing, planetary boundary layer (PBL), and microphysical
parameterizations. We conclude that the key impact of parameterization schemes
on SA is through their control of the number of convective cores and their relative
spacing, $d_{clr}$, which itself is impacted by cold-pool (CP) properties and
mean updraft core size. SA is more likely when the convective core count is small,
while CPs modify convective spacing via suppression in their interiors and triggering
by gust-front convergence and collisions. Each parameterization scheme emphasizes
a different mechanism. Subgrid-scale horizontal turbulent mixing mainly affects
SA through the determination of convective core size and thus spacing. The sensitivity
to the microphysics is mainly through rain evaporation and the subsequent impact
on CPs, while perturbations to the ice cloud microphysics have a limited effect.
Non-local PBL mixing schemes promote SA primarily by increasing convective inhibition
through inversion entrainment and altering low cloud amounts, leading to fewer
convective cores and larger $d_{clr}$. '
acknowledgement: This article is based on chapter 3 of AC Ph.D. thesis. The authors
thank Graziano Giuliani for his coding assistance. We also thank Daniel Hernández-Deckers,
Paolina Cerlini, and especially to Giovanni Biagioli for discussions and feedback.
We also thank two reviewers for their insightful comments. AC was supported by a
fellowship awarded by ICTP and by the European Union Horizon 2020 Marie Skłodowska-Curie
grant agreement No. 101034413. CM acknowledges funding from the European Research
Council (ERC) under the European Union's Horizon 2020 research and innovation program
(Project CLUSTER, Grant Agreement No. 805041).
article_number: e2024MS004791
article_processing_charge: Yes
article_type: original
author:
- first_name: Alejandro
full_name: Casallas Garcia, Alejandro
id: 92081129-2d75-11ef-a48d-b04dd7a2385a
last_name: Casallas Garcia
orcid: 0000-0002-1988-5035
- first_name: A.M.
full_name: Tompkins, A.M.
last_name: Tompkins
- first_name: Caroline J
full_name: Muller, Caroline J
id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
last_name: Muller
orcid: 0000-0001-5836-5350
- first_name: G.
full_name: Thompson, G.
last_name: Thompson
citation:
ama: Casallas Garcia A, Tompkins AM, Muller CJ, Thompson G. Sensitivity of self-aggregation
and the key role of the free convection distance. Journal of Advances in Modeling
Earth Systems. 2025;17(3). doi:10.1029/2024MS004791
apa: Casallas Garcia, A., Tompkins, A. M., Muller, C. J., & Thompson, G. (2025).
Sensitivity of self-aggregation and the key role of the free convection distance.
Journal of Advances in Modeling Earth Systems. Wiley. https://doi.org/10.1029/2024MS004791
chicago: Casallas Garcia, Alejandro, A.M. Tompkins, Caroline J Muller, and G. Thompson.
“Sensitivity of Self-Aggregation and the Key Role of the Free Convection Distance.”
Journal of Advances in Modeling Earth Systems. Wiley, 2025. https://doi.org/10.1029/2024MS004791.
ieee: A. Casallas Garcia, A. M. Tompkins, C. J. Muller, and G. Thompson, “Sensitivity
of self-aggregation and the key role of the free convection distance,” Journal
of Advances in Modeling Earth Systems, vol. 17, no. 3. Wiley, 2025.
ista: Casallas Garcia A, Tompkins AM, Muller CJ, Thompson G. 2025. Sensitivity of
self-aggregation and the key role of the free convection distance. Journal of
Advances in Modeling Earth Systems. 17(3), e2024MS004791.
mla: Casallas Garcia, Alejandro, et al. “Sensitivity of Self-Aggregation and the
Key Role of the Free Convection Distance.” Journal of Advances in Modeling
Earth Systems, vol. 17, no. 3, e2024MS004791, Wiley, 2025, doi:10.1029/2024MS004791.
short: A. Casallas Garcia, A.M. Tompkins, C.J. Muller, G. Thompson, Journal of Advances
in Modeling Earth Systems 17 (2025).
corr_author: '1'
date_created: 2025-03-19T07:58:38Z
date_published: 2025-03-18T00:00:00Z
date_updated: 2025-09-30T11:04:38Z
day: '18'
ddc:
- '550'
department:
- _id: CaMu
doi: 10.1029/2024MS004791
ec_funded: 1
external_id:
isi:
- '001447023900001'
file:
- access_level: open_access
checksum: bc32677e63f8abb07b330f4a08da796d
content_type: application/pdf
creator: acasalla
date_created: 2025-03-19T07:58:21Z
date_updated: 2025-03-19T07:58:21Z
file_id: '19417'
file_name: Casallas_et_al_2025_dclr.pdf
file_size: 18285343
relation: main_file
file_date_updated: 2025-03-19T07:58:21Z
fulldoi: https://doi.org/10.1029/2024MS004791
has_accepted_license: '1'
intvolume: ' 17'
isi: 1
issue: '3'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
- _id: 629205d8-2b32-11ec-9570-e1356ff73576
call_identifier: H2020
grant_number: '805041'
name: Organization of CLoUdS, and implications of Tropical cyclones and for the
Energetics of the tropics, in current and waRming climate
publication: Journal of Advances in Modeling Earth Systems
publication_identifier:
eissn:
- 1942-2466
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sensitivity of self-aggregation and the key role of the free convection distance
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 17
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '19418'
abstract:
- lang: eng
text: The size-Ramsey number r^(H) of a graph H is the smallest number of edges
a (host) graph G can have, such that for any red/blue colouring of G, there is
a monochromatic copy of H in G. Recently, Conlon, Nenadov and Trujić showed that
if H is a graph on n vertices and maximum degree three, then r^(H)=O(n8/5), improving
upon the upper bound of n5/3+o(1) by Kohayakawa, Rödl, Schacht and Szemerédi.
In this paper we show that r^(H)≤n3/2+o(1). While the previously used host graphs
were vanilla binomial random graphs, we prove our result using a novel host graph
construction. Our bound hits a natural barrier of the existing methods.
acknowledgement: 'We would like to thank Rajko Nenadov and Miloš Trujić for helpful
comments and discussions, as well as the anonymous referees for their very useful
feedback, which improved the paper considerably. This research was supported by
SNSF Project 217926. Part of this research was conducted while Nemanja Draganić
was at ETH Zürich, Switzerland, and partially supported by SNSF Grant 200021_196965.
This project has received funding from the European Union''s Horizon 2020 research
and innovation programme under the Marie Skłodowska-Curie Grant Agreement Number:
101034413. Part of this research was conducted while Kalina Petrova was at the Department
of Computer Science, ETH Zürich, Switzerland, supported by SNSF Grant CRSII5 173721.'
article_number: e70116
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Nemanja
full_name: Draganić, Nemanja
last_name: Draganić
- first_name: Kalina H
full_name: Petrova, Kalina H
id: 554ff4e4-f325-11ee-b0c4-a10dbd523381
last_name: Petrova
citation:
ama: Draganić N, Petrova KH. Size‐Ramsey numbers of graphs with maximum degree three.
Journal of the London Mathematical Society. 2025;111(3). doi:10.1112/jlms.70116
apa: Draganić, N., & Petrova, K. H. (2025). Size‐Ramsey numbers of graphs with
maximum degree three. Journal of the London Mathematical Society. Wiley.
https://doi.org/10.1112/jlms.70116
chicago: Draganić, Nemanja, and Kalina H Petrova. “Size‐Ramsey Numbers of Graphs
with Maximum Degree Three.” Journal of the London Mathematical Society.
Wiley, 2025. https://doi.org/10.1112/jlms.70116.
ieee: N. Draganić and K. H. Petrova, “Size‐Ramsey numbers of graphs with maximum
degree three,” Journal of the London Mathematical Society, vol. 111, no.
3. Wiley, 2025.
ista: Draganić N, Petrova KH. 2025. Size‐Ramsey numbers of graphs with maximum degree
three. Journal of the London Mathematical Society. 111(3), e70116.
mla: Draganić, Nemanja, and Kalina H. Petrova. “Size‐Ramsey Numbers of Graphs with
Maximum Degree Three.” Journal of the London Mathematical Society, vol.
111, no. 3, e70116, Wiley, 2025, doi:10.1112/jlms.70116.
short: N. Draganić, K.H. Petrova, Journal of the London Mathematical Society 111
(2025).
date_created: 2025-03-19T09:03:37Z
date_published: 2025-03-01T00:00:00Z
date_updated: 2025-09-30T11:05:07Z
day: '01'
ddc:
- '510'
department:
- _id: MaKw
doi: 10.1112/jlms.70116
ec_funded: 1
external_id:
arxiv:
- '2207.05048'
isi:
- '001450645400019'
file:
- access_level: open_access
checksum: d8e0a03286a44c4f672709e3c829206e
content_type: application/pdf
creator: dernst
date_created: 2025-03-20T09:46:20Z
date_updated: 2025-03-20T09:46:20Z
file_id: '19427'
file_name: 2025_JournLondonMath_Draganic.pdf
file_size: 625974
relation: main_file
success: 1
file_date_updated: 2025-03-20T09:46:20Z
fulldoi: https://doi.org/10.1112/jlms.70116
has_accepted_license: '1'
intvolume: ' 111'
isi: 1
issue: '3'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
publication: Journal of the London Mathematical Society
publication_identifier:
eissn:
- 1469-7750
issn:
- 0024-6107
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Size‐Ramsey numbers of graphs with maximum degree three
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 111
year: '2025'
...
---
OA_type: closed access
_id: '19420'
abstract:
- lang: eng
text: Auxin and its PIN-FORMED (PIN) exporters are essential for tissue repair and
regeneration in flowering plants. To gain insight into the evolution of this mechanism,
we investigated their roles in leaves excised from Physcomitrium patens, a bryophyte
known for its remarkable cell reprogramming capacity. We used various approaches
to manipulate auxin levels, including exogenous application, pharmacological manipulations,
and auxin biosynthesis mutants. We observed no significant effect on the rate
of cell reprogramming. Rather, our analysis of auxin dynamics revealed a decrease
in auxin levels upon excision, which was followed by a local increase before the
reprogramming process began. Mutant analysis revealed that PpPINs are required
for effective cell reprogramming, and endogenously expressed PpPINA-GFP accumulates
polarly at sites that will develop into future filamentous stem cells. In addition,
hyperpolarized PpPINA variants carrying mutated phosphorylation sites showed a
marked delay in reprogramming, whereas endogenous or nonpolar versions do not
have this effect. These results underscore that both the levels and the polarity
of PpPINA are important for efficient cell reprogramming. Overall, these findings
highlight the pivotal role of PIN polarity in plant regeneration. Furthermore,
they suggest that understanding polarity mechanisms could have broader implications
for improving regenerative processes across various plant species.
acknowledgement: "The authors sincerely thank Dr Barbara Kloeckener Gruissem’s time
and efforts in critical reading and constructive advice on the manuscript. The authors
gratefully acknowledge Dr. Eva Sundberg for generously providing transgenic plants
to support this study.\r\nThis work was supported by the European Research Council
Advanced Grant (ETAP-742985 to H.T. and J.F.) and the Taiwan National Science and
Technology Council (NSTC 112-2311-B-005-008 to H.T. and L.-H.C.)."
article_number: pcaf008
article_processing_charge: No
article_type: original
author:
- first_name: Han
full_name: Tang, Han
id: 19BDF720-25A0-11EA-AC6E-928F3DDC885E
last_name: Tang
orcid: 0000-0001-6152-6637
- first_name: L
full_name: Chen, L
last_name: Chen
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Tang H, Chen L, Friml J. Auxin fluctuation and PIN polarization in moss leaf
cell reprogramming. Plant and Cell Physiology. 2025. doi:10.1093/pcp/pcaf008
apa: Tang, H., Chen, L., & Friml, J. (2025). Auxin fluctuation and PIN polarization
in moss leaf cell reprogramming. Plant and Cell Physiology. Oxford University
Press. https://doi.org/10.1093/pcp/pcaf008
chicago: Tang, Han, L Chen, and Jiří Friml. “Auxin Fluctuation and PIN Polarization
in Moss Leaf Cell Reprogramming.” Plant and Cell Physiology. Oxford University
Press, 2025. https://doi.org/10.1093/pcp/pcaf008.
ieee: H. Tang, L. Chen, and J. Friml, “Auxin fluctuation and PIN polarization in
moss leaf cell reprogramming.,” Plant and Cell Physiology. Oxford University
Press, 2025.
ista: Tang H, Chen L, Friml J. 2025. Auxin fluctuation and PIN polarization in moss
leaf cell reprogramming. Plant and Cell Physiology., pcaf008.
mla: Tang, Han, et al. “Auxin Fluctuation and PIN Polarization in Moss Leaf Cell
Reprogramming.” Plant and Cell Physiology, pcaf008, Oxford University Press,
2025, doi:10.1093/pcp/pcaf008.
short: H. Tang, L. Chen, J. Friml, Plant and Cell Physiology (2025).
corr_author: '1'
date_created: 2025-03-19T09:44:19Z
date_published: 2025-03-05T00:00:00Z
date_updated: 2025-09-30T11:05:55Z
day: '05'
department:
- _id: JiFr
doi: 10.1093/pcp/pcaf008
ec_funded: 1
external_id:
isi:
- '001436802900001'
pmid:
- '39829340'
fulldoi: https://doi.org/10.1093/pcp/pcaf008
isi: 1
language:
- iso: eng
month: '03'
oa_version: None
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '742985'
name: Tracing Evolution of Auxin Transport and Polarity in Plants
publication: Plant and Cell Physiology
publication_identifier:
eissn:
- 1471-9053
issn:
- 0032-0781
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Auxin fluctuation and PIN polarization in moss leaf cell reprogramming.
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '19422'
abstract:
- lang: eng
text: Nitrogen (N) is an essential macronutrient for plant development and, ultimately,
yield. Identifying the genetic components and mechanisms underlying N use efficiency
in maize (Zea mays L.) is thus of great importance. Nitrate (NO3−) is the preferred
inorganic N source in maize. Here we performed a genome-wide association study
of shoot NO3− accumulation in maize seedlings grown under low-NO3− conditions,
identifying the ferredoxin family gene ZmFd4 as a major contributor to this trait.
ZmFd4 interacts and co-localizes with nitrite reductases (ZmNiRs) in chloroplasts
to promote their enzymatic activity. Furthermore, ZmFd4 forms a high-affinity
heterodimer with its closest paralogue, ZmFd9, in a NO3−-sensitive manner. Although
ZmFd4 exerts similar biochemical functions as ZmFd9, ZmFd4 and ZmFd9 interaction
limits their ability to associate with ZmNiRs and stimulate their activity. Knockout
lines for ZmFd4 with decreased NO3− contents exhibit more efficient NO3− assimilation,
and field experiments show consistently improved N utilization and grain yield
under N-deficient conditions. Our work thus provides molecular and mechanistic
insights into the natural variation in N utilization, instrumental for genetic
improvement of yield in maize and, potentially, in other crops.
acknowledgement: We thank X. Yang for providing published inbred lines and helping
with data analysis; and S. Huang, C. Jiang, G. Bi, C. Liu and S. Zhang for helpful
discussions. The transgenic maize lines were generated by the Center for Crop Functional
Genomics and Molecular Breeding of China Agricultural University. This work was
supported by grants from the National Key Research and Development Program of China
(2021YFF1000500 to J.Z.), the National Natural Science Foundation of China (32170265
and 32441022 to J.Z.), the Chinese Universities Scientific Fund (2024TC084 to J.Z.),
the Pinduoduo-China Agricultural University Research Fund (PC2024B01005 to J.Z.),
the Hainan Provincial Natural Science Foundation of China (323CXTD379 to J.Z.),
and the Central Guidance on Local Science and Technology Development Fund of Shanxi
Province (YDZJSX2024D040 to C.T. and J.Z.).
article_number: '5207'
article_processing_charge: No
article_type: original
author:
- first_name: G
full_name: Jia, G
last_name: Jia
- first_name: G
full_name: Chen, G
last_name: Chen
- first_name: Z
full_name: Zhang, Z
last_name: Zhang
- first_name: C
full_name: Tian, C
last_name: Tian
- first_name: Y
full_name: Wang, Y
last_name: Wang
- first_name: J
full_name: Luo, J
last_name: Luo
- first_name: K
full_name: Zhang, K
last_name: Zhang
- first_name: X
full_name: Zhao, X
last_name: Zhao
- first_name: X
full_name: Zhao, X
last_name: Zhao
- first_name: Z
full_name: Li, Z
last_name: Li
- first_name: L
full_name: Sun, L
last_name: Sun
- first_name: W
full_name: Yang, W
last_name: Yang
- first_name: Y
full_name: Guo, Y
last_name: Guo
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Z
full_name: Gong, Z
last_name: Gong
- first_name: J
full_name: Zhang, J
last_name: Zhang
citation:
ama: Jia G, Chen G, Zhang Z, et al. Ferredoxin-mediated mechanism for efficient
nitrogen utilization in maize. Nature Plants. 2025;11. doi:10.1038/s41477-025-01934-w
apa: Jia, G., Chen, G., Zhang, Z., Tian, C., Wang, Y., Luo, J., … Zhang, J. (2025).
Ferredoxin-mediated mechanism for efficient nitrogen utilization in maize. Nature
Plants. Springer Nature. https://doi.org/10.1038/s41477-025-01934-w
chicago: Jia, G, G Chen, Z Zhang, C Tian, Y Wang, J Luo, K Zhang, et al. “Ferredoxin-Mediated
Mechanism for Efficient Nitrogen Utilization in Maize.” Nature Plants.
Springer Nature, 2025. https://doi.org/10.1038/s41477-025-01934-w.
ieee: G. Jia et al., “Ferredoxin-mediated mechanism for efficient nitrogen
utilization in maize,” Nature Plants, vol. 11. Springer Nature, 2025.
ista: Jia G, Chen G, Zhang Z, Tian C, Wang Y, Luo J, Zhang K, Zhao X, Zhao X, Li
Z, Sun L, Yang W, Guo Y, Friml J, Gong Z, Zhang J. 2025. Ferredoxin-mediated mechanism
for efficient nitrogen utilization in maize. Nature Plants. 11, 5207.
mla: Jia, G., et al. “Ferredoxin-Mediated Mechanism for Efficient Nitrogen Utilization
in Maize.” Nature Plants, vol. 11, 5207, Springer Nature, 2025, doi:10.1038/s41477-025-01934-w.
short: G. Jia, G. Chen, Z. Zhang, C. Tian, Y. Wang, J. Luo, K. Zhang, X. Zhao, X.
Zhao, Z. Li, L. Sun, W. Yang, Y. Guo, J. Friml, Z. Gong, J. Zhang, Nature Plants
11 (2025).
date_created: 2025-03-19T09:44:55Z
date_published: 2025-03-05T00:00:00Z
date_updated: 2025-11-12T07:52:06Z
day: '05'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1038/s41477-025-01934-w
external_id:
isi:
- '001437953800001'
pmid:
- '40044942'
file:
- access_level: open_access
checksum: caeaf1a8bc3e1435e8c995d1d9df5390
content_type: application/pdf
creator: dernst
date_created: 2025-11-12T07:50:45Z
date_updated: 2025-11-12T07:50:45Z
file_id: '20634'
file_name: 2025_NaturePlants_Jia_submitted.pdf
file_size: 2714177
relation: main_file
success: 1
file_date_updated: 2025-11-12T07:50:45Z
fulldoi: https://doi.org/10.1038/s41477-025-01934-w
has_accepted_license: '1'
intvolume: ' 11'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Submitted Version
pmid: 1
publication: Nature Plants
publication_identifier:
issn:
- 2055-0278
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Ferredoxin-mediated mechanism for efficient nitrogen utilization in maize
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 11
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '19423'
abstract:
- lang: eng
text: "Auxin, indole-3-acetic acid (IAA), is a key phytohormone with diverse morphogenic
roles in land plants, but its function and transport mechanisms in algae remain
poorly understood. We therefore aimed to explore the role of IAA in a complex,
streptophyte algae Chara braunii.\r\nHere, we described novel responses of C.
braunii to IAA and characterized two homologs of PIN auxin efflux carriers: CbPINa
and CbPINc. We determined their localization in C. braunii using epitope-specific
antibodies and tested their function in heterologous land plant models. Further,
using phosphoproteomic analysis, we identified IAA-induced phosphorylation events.\r\nThe
thallus regeneration assay showed that IAA promotes thallus elongation and side
branch development. Immunolocalization of CbPINa and CbPINc confirmed their presence
on the plasma membrane of vegetative and generative cells of C. braunii. However,
functional assays in tobacco BY-2 cells demonstrated that CbPINa affects auxin
transport, whereas CbPINc does not. The IAA is effective in the acceleration of
cytoplasmic streaming and the phosphorylation of evolutionary conserved targets
such as homolog of RAF-like kinase.\r\nThese findings suggest that, although canonical
PIN-mediated auxin transport mechanisms might not be fully conserved in Chara,
IAA is involved in morphogenesis and fast signaling processes."
acknowledgement: 'This work was supported by funding from the Czech Science Foundation
project no. 20-13587S to JP and SV, Charles University Grant Agency projects no.
289523 to KK and no. 393422 to VS, a DOC fellowship of the Austrian Academy of Sciences
to AS, and the Austrian Science Fund (FWF): I 6123-B to JF. The authors acknowledge
the Imaging Facility of the Institute of Experimental Botany AS CR supported by
the MEYS CR (LM2023050 Czech-BioImaging), the Czech Academy of Sciences and IEB
AS CR, and Viničná Microscopy Core Facility cofinanced by the Czech-BioImaging large
RI project LM2023050. Computational resources were provided by the e-INFRA CZ project
(ID:90254), supported by the MEYS CR. The authors would like to thank Ilse Foissner
and Margit Höftberger for discussing details of immunostaining protocol, Katarzyna
Retzer and Jan Martinek for help with western blots, Anna Kampová for help with
phosphoproteome sampling, Anja Holzhausen and MadLAnd for providing Chara braunii
strain S276, and Roman Skokan for valuable discussion. Open access publishing facilitated
by Univerzita Karlova, as part of the Wiley - CzechELib agreement.'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: K
full_name: Kurtović, K
last_name: Kurtović
- first_name: S
full_name: Vosolsobě, S
last_name: Vosolsobě
- first_name: D
full_name: Nedvěd, D
last_name: Nedvěd
- first_name: K
full_name: Müller, K
last_name: Müller
- first_name: PI
full_name: Dobrev, PI
last_name: Dobrev
- first_name: V
full_name: Schmidt, V
last_name: Schmidt
- first_name: P
full_name: Piszczek, P
last_name: Piszczek
- first_name: A
full_name: Kuhn, A
last_name: Kuhn
- first_name: Adrijana
full_name: Smoljan, Adrijana
id: cced8a85-223e-11ed-af04-b0596c55053b
last_name: Smoljan
- first_name: TJ
full_name: Fisher, TJ
last_name: Fisher
- first_name: D
full_name: Weijers, D
last_name: Weijers
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: JL
full_name: Bowman, JL
last_name: Bowman
- first_name: J
full_name: Petrášek, J
last_name: Petrášek
citation:
ama: Kurtović K, Vosolsobě S, Nedvěd D, et al. The role of indole-3-acetic acid
and characterization of PIN transporters in complex streptophyte alga Chara braunii.
New Phytologist. 2025;246(3):1066-1083. doi:10.1111/nph.70019
apa: Kurtović, K., Vosolsobě, S., Nedvěd, D., Müller, K., Dobrev, P., Schmidt, V.,
… Petrášek, J. (2025). The role of indole-3-acetic acid and characterization of
PIN transporters in complex streptophyte alga Chara braunii. New Phytologist.
Wiley. https://doi.org/10.1111/nph.70019
chicago: Kurtović, K, S Vosolsobě, D Nedvěd, K Müller, PI Dobrev, V Schmidt, P Piszczek,
et al. “The Role of Indole-3-Acetic Acid and Characterization of PIN Transporters
in Complex Streptophyte Alga Chara Braunii.” New Phytologist. Wiley, 2025.
https://doi.org/10.1111/nph.70019.
ieee: K. Kurtović et al., “The role of indole-3-acetic acid and characterization
of PIN transporters in complex streptophyte alga Chara braunii,” New Phytologist,
vol. 246, no. 3. Wiley, pp. 1066–1083, 2025.
ista: Kurtović K, Vosolsobě S, Nedvěd D, Müller K, Dobrev P, Schmidt V, Piszczek
P, Kuhn A, Smoljan A, Fisher T, Weijers D, Friml J, Bowman J, Petrášek J. 2025.
The role of indole-3-acetic acid and characterization of PIN transporters in complex
streptophyte alga Chara braunii. New Phytologist. 246(3), 1066–1083.
mla: Kurtović, K., et al. “The Role of Indole-3-Acetic Acid and Characterization
of PIN Transporters in Complex Streptophyte Alga Chara Braunii.” New Phytologist,
vol. 246, no. 3, Wiley, 2025, pp. 1066–83, doi:10.1111/nph.70019.
short: K. Kurtović, S. Vosolsobě, D. Nedvěd, K. Müller, P. Dobrev, V. Schmidt, P.
Piszczek, A. Kuhn, A. Smoljan, T. Fisher, D. Weijers, J. Friml, J. Bowman, J.
Petrášek, New Phytologist 246 (2025) 1066–1083.
date_created: 2025-03-19T09:45:11Z
date_published: 2025-05-01T00:00:00Z
date_updated: 2025-09-30T11:11:18Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1111/nph.70019
external_id:
isi:
- '001438711600001'
pmid:
- '40047465'
file:
- access_level: open_access
checksum: 861c9bf47e7a7766ed03e6d85bd4f6dc
content_type: application/pdf
creator: dernst
date_created: 2025-04-16T08:03:36Z
date_updated: 2025-04-16T08:03:36Z
file_id: '19571'
file_name: 2025_NewPhytologist_Kurtovic.pdf
file_size: 12841729
relation: main_file
success: 1
file_date_updated: 2025-04-16T08:03:36Z
fulldoi: https://doi.org/10.1111/nph.70019
has_accepted_license: '1'
intvolume: ' 246'
isi: 1
issue: '3'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 1066-1083
pmid: 1
project:
- _id: bd76d395-d553-11ed-ba76-f678c14f9033
grant_number: I06123
name: Peptide receptors for auxin canalization in Arabidopsis
publication: New Phytologist
publication_identifier:
issn:
- 1469-8137
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: The role of indole-3-acetic acid and characterization of PIN transporters in
complex streptophyte alga Chara braunii
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 246
year: '2025'
...
---
OA_place: publisher
OA_type: gold
_id: '19433'
abstract:
- lang: eng
text: An ordered r-matching is an r-uniform hypergraph matching equipped with an
ordering on its vertices. These objects can be viewed as natural generalisations
of r-dimensional orders. The theory of ordered 2-matchings is well developed and
has connections and applications to extremal and enumerative combinatorics, probability
and geometry. On the other hand, in the case r≥3 much less is known, largely
due to a lack of powerful bijective tools. Recently, Dudek, Grytczuk and Ruciński
made some first steps towards a general theory of ordered r-matchings, and in
this paper we substantially improve several of their results and introduce some
new directions of study. Many intriguing open questions remain.
acknowledgement: We would like to thank Timo Seppäläinen for some illuminating discussion
about random high-dimensional orders and for bringing our attention to [59]. We
would also like to thank the referees for helpful feedback. Michael Anastos is supported
by the European Union’s Horizon 2020 research and innovation programme under the
Marie Skłodowska-Curie grant agreement No. 101034413. Matthew Kwan is supported
by ERC Starting Grant ‘RANDSTRUCT’ No. 101076777, also funded by the European Union.
Zhihan Jin and Benny Sudakov are supported by SNSF grant 200021-228014.
article_number: e55
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Michael
full_name: Anastos, Michael
id: 0b2a4358-bb35-11ec-b7b9-e3279b593dbb
last_name: Anastos
- first_name: Zhihan
full_name: Jin, Zhihan
last_name: Jin
- first_name: Matthew Alan
full_name: Kwan, Matthew Alan
id: 5fca0887-a1db-11eb-95d1-ca9d5e0453b3
last_name: Kwan
orcid: 0000-0002-4003-7567
- first_name: Benny
full_name: Sudakov, Benny
last_name: Sudakov
citation:
ama: Anastos M, Jin Z, Kwan MA, Sudakov B. Extremal, enumerative and probabilistic
results on ordered hypergraph matchings. Forum of Mathematics, Sigma. 2025;13.
doi:10.1017/fms.2024.144
apa: Anastos, M., Jin, Z., Kwan, M. A., & Sudakov, B. (2025). Extremal, enumerative
and probabilistic results on ordered hypergraph matchings. Forum of Mathematics,
Sigma. Cambridge University Press. https://doi.org/10.1017/fms.2024.144
chicago: Anastos, Michael, Zhihan Jin, Matthew Alan Kwan, and Benny Sudakov. “Extremal,
Enumerative and Probabilistic Results on Ordered Hypergraph Matchings.” Forum
of Mathematics, Sigma. Cambridge University Press, 2025. https://doi.org/10.1017/fms.2024.144.
ieee: M. Anastos, Z. Jin, M. A. Kwan, and B. Sudakov, “Extremal, enumerative and
probabilistic results on ordered hypergraph matchings,” Forum of Mathematics,
Sigma, vol. 13. Cambridge University Press, 2025.
ista: Anastos M, Jin Z, Kwan MA, Sudakov B. 2025. Extremal, enumerative and probabilistic
results on ordered hypergraph matchings. Forum of Mathematics, Sigma. 13, e55.
mla: Anastos, Michael, et al. “Extremal, Enumerative and Probabilistic Results on
Ordered Hypergraph Matchings.” Forum of Mathematics, Sigma, vol. 13, e55,
Cambridge University Press, 2025, doi:10.1017/fms.2024.144.
short: M. Anastos, Z. Jin, M.A. Kwan, B. Sudakov, Forum of Mathematics, Sigma 13
(2025).
corr_author: '1'
date_created: 2025-03-20T12:59:14Z
date_published: 2025-03-14T00:00:00Z
date_updated: 2025-09-30T11:18:57Z
day: '14'
ddc:
- '510'
department:
- _id: MaKw
doi: 10.1017/fms.2024.144
ec_funded: 1
external_id:
arxiv:
- '2308.12268'
isi:
- '001444429200001'
file:
- access_level: open_access
checksum: f396270ad78c1ed67095c8e5a66fca26
content_type: application/pdf
creator: dernst
date_created: 2025-04-03T11:24:35Z
date_updated: 2025-04-03T11:24:35Z
file_id: '19468'
file_name: 2025_ForumMathSigma_Anastos.pdf
file_size: 630297
relation: main_file
success: 1
file_date_updated: 2025-04-03T11:24:35Z
fulldoi: https://doi.org/10.1017/fms.2024.144
has_accepted_license: '1'
intvolume: ' 13'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
call_identifier: H2020
grant_number: '101034413'
name: 'IST-BRIDGE: International postdoctoral program'
- _id: bd95085b-d553-11ed-ba76-e55d3349be45
grant_number: '101076777'
name: Randomness and structure in combinatorics
publication: Forum of Mathematics, Sigma
publication_identifier:
issn:
- 2050-5094
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Extremal, enumerative and probabilistic results on ordered hypergraph matchings
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 13
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '19436'
abstract:
- lang: eng
text: Dynamic DNA methylation represses transposable elements (TEs) and regulates
gene activity, playing a pivotal role in plant development. Although substantial
progress has been made in understanding DNA methylation reprogramming during germline
development in Arabidopsis thaliana, whether similar mechanisms exist in other
dicot plants remains unclear. Here, we analyzed DNA methylation levels in meiocytes,
microspores, and pollens of Brassica Rapa using whole-genome bisulfite sequencing
(WGBS). Global DNA methylation analysis revealed similar CHH methylation reprogramming
compared to Arabidopsis, while distinct patterns were observed in the dynamics
of global CG and CHG methylation in B. rapa. Differentially methylated region
(DMR) analysis identified specifically methylated loci in the male sex cells of
B. Rapa with a stronger tendency to target genes, similar to observations in Arabidopsis.
Additionally, we found that the activity and genomic targeting preference of the
small RNA-directed DNA methylation (RdDM) were altered during B. Rapa male germline
development. A subset of long terminal repeat (LTR) TEs were activated, possibly
due to the dynamic regulation of DNA methylation during male sexual development
in B. Rapa. These findings provided new insights into the evolution of epigenetic
reprogramming mechanisms in plants.
acknowledgement: We thank Prof. Ying Li of Nanjing Agricultural University for her
help in providing seeds of K2 materials. This work was carried out with the support
of National Natural Science Foundation of China (Grant No. 32070608).
article_number: '16'
article_processing_charge: Yes
article_type: original
author:
- first_name: Jun
full_name: Zhang, Jun
last_name: Zhang
- first_name: Di
full_name: Wu, Di
last_name: Wu
- first_name: Yating
full_name: Zhang, Yating
last_name: Zhang
- first_name: Xiaoqi
full_name: Feng, Xiaoqi
id: e0164712-22ee-11ed-b12a-d80fcdf35958
last_name: Feng
orcid: 0000-0002-4008-1234
- first_name: Hongbo
full_name: Gao, Hongbo
id: 77c2e73a-eabd-11ef-aee9-8093a2ba7a93
last_name: Gao
citation:
ama: Zhang J, Wu D, Zhang Y, Feng X, Gao H. DNA methylation dynamics in male germline
development in Brassica Rapa. Molecular Horticulture. 2025;5. doi:10.1186/s43897-024-00137-9
apa: Zhang, J., Wu, D., Zhang, Y., Feng, X., & Gao, H. (2025). DNA methylation
dynamics in male germline development in Brassica Rapa. Molecular Horticulture.
Springer Nature. https://doi.org/10.1186/s43897-024-00137-9
chicago: Zhang, Jun, Di Wu, Yating Zhang, Xiaoqi Feng, and Hongbo Gao. “DNA Methylation
Dynamics in Male Germline Development in Brassica Rapa.” Molecular Horticulture.
Springer Nature, 2025. https://doi.org/10.1186/s43897-024-00137-9.
ieee: J. Zhang, D. Wu, Y. Zhang, X. Feng, and H. Gao, “DNA methylation dynamics
in male germline development in Brassica Rapa,” Molecular Horticulture,
vol. 5. Springer Nature, 2025.
ista: Zhang J, Wu D, Zhang Y, Feng X, Gao H. 2025. DNA methylation dynamics in male
germline development in Brassica Rapa. Molecular Horticulture. 5, 16.
mla: Zhang, Jun, et al. “DNA Methylation Dynamics in Male Germline Development in
Brassica Rapa.” Molecular Horticulture, vol. 5, 16, Springer Nature, 2025,
doi:10.1186/s43897-024-00137-9.
short: J. Zhang, D. Wu, Y. Zhang, X. Feng, H. Gao, Molecular Horticulture 5 (2025).
corr_author: '1'
date_created: 2025-03-23T23:01:25Z
date_published: 2025-03-04T00:00:00Z
date_updated: 2025-09-30T11:17:08Z
day: '04'
ddc:
- '580'
department:
- _id: XiFe
doi: 10.1186/s43897-024-00137-9
external_id:
isi:
- '001436233900001'
pmid:
- '40033451'
file:
- access_level: open_access
checksum: 6d1e0e9b0e1902e4a711f81c5c17a070
content_type: application/pdf
creator: dernst
date_created: 2025-03-25T12:15:32Z
date_updated: 2025-03-25T12:15:32Z
file_id: '19460'
file_name: 2025_MolecularHorticulture_Zhang.pdf
file_size: 3014980
relation: main_file
success: 1
file_date_updated: 2025-03-25T12:15:32Z
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month: '03'
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publication: Molecular Horticulture
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title: DNA methylation dynamics in male germline development in Brassica Rapa
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