---
OA_place: publisher
OA_type: gold
_id: '21089'
abstract:
- lang: eng
  text: 'Hypertrace logic is a sorted first-order logic with separate sorts for time
    and execution traces. Its formulas specify hyperproperties, which are properties
    relating multiple traces. In this work, we extend hypertrace logic by introducing
    trace quantifiers that range over the set of all possible traces. In this extended
    logic, formulas can quantify over two kinds of trace variables: constrained trace
    variables, which range over a fixed set of traces defined by the model, and unconstrained
    trace variables, which can be assigned to any trace. In comparison, hyperlogics
    such as HyperLTL have only constrained trace quantifiers. We use hypertrace logic
    to study how different quantifier patterns affect the decidability of the satisfiability
    problem. We prove that hypertrace logic without constrained trace quantifiers
    is equivalent to monadic second-order logic of one successor (S1S), and therefore
    satisfiable, and that the trace-prefixed fragment (all trace quantifiers precede
    all time quantifiers) is equivalent to HyperQPTL. Moreover, we show that all hypertrace
    formulas where the only alternation between constrained trace quantifiers is from
    an existential to a universal quantifier are equisatisfiable to formulas without
    constraints on their trace variables and, therefore, decidable as well. Our framework
    allows us to study also time-prefixed hyperlogics, for which we provide new decidability
    and undecidability results.'
acknowledgement: This work was supported in part by the Austrian Science Fund (FWF)
  SFB project SpyCoDe 10.55776/F85 and by the ERC Advanced Grant VAMOS 101020093.
alternative_title:
- LIPIcs
article_processing_charge: No
arxiv: 1
author:
- first_name: Marek
  full_name: Chalupa, Marek
  id: 87e34708-d6c6-11ec-9f5b-9391e7be2463
  last_name: Chalupa
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Ana A
  full_name: Oliveira da Costa, Ana A
  id: 8b282559-50b0-11ef-861e-d6ace0d92e9b
  last_name: Oliveira da Costa
citation:
  ama: 'Chalupa M, Henzinger TA, Oliveira da Costa AA. Flavors of quantifiers in hyperlogics.
    In: <i>45th Annual Conference on Foundations of Software Technology and Theoretical
    Computer Science</i>. Vol 360. Schloss Dagstuhl - Leibniz-Zentrum für Informatik;
    2025:20:1-20:18. doi:<a href="https://doi.org/10.4230/LIPICS.FSTTCS.2025.20">10.4230/LIPICS.FSTTCS.2025.20</a>'
  apa: 'Chalupa, M., Henzinger, T. A., &#38; Oliveira da Costa, A. A. (2025). Flavors
    of quantifiers in hyperlogics. In <i>45th Annual Conference on Foundations of
    Software Technology and Theoretical Computer Science</i> (Vol. 360, p. 20:1-20:18).
    Pilani, India: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. <a href="https://doi.org/10.4230/LIPICS.FSTTCS.2025.20">https://doi.org/10.4230/LIPICS.FSTTCS.2025.20</a>'
  chicago: Chalupa, Marek, Thomas A Henzinger, and Ana A Oliveira da Costa. “Flavors
    of Quantifiers in Hyperlogics.” In <i>45th Annual Conference on Foundations of
    Software Technology and Theoretical Computer Science</i>, 360:20:1-20:18. Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2025. <a href="https://doi.org/10.4230/LIPICS.FSTTCS.2025.20">https://doi.org/10.4230/LIPICS.FSTTCS.2025.20</a>.
  ieee: M. Chalupa, T. A. Henzinger, and A. A. Oliveira da Costa, “Flavors of quantifiers
    in hyperlogics,” in <i>45th Annual Conference on Foundations of Software Technology
    and Theoretical Computer Science</i>, Pilani, India, 2025, vol. 360, p. 20:1-20:18.
  ista: 'Chalupa M, Henzinger TA, Oliveira da Costa AA. 2025. Flavors of quantifiers
    in hyperlogics. 45th Annual Conference on Foundations of Software Technology and
    Theoretical Computer Science. FSTTCS: Conference on Foundations of Software Technology
    and Theoretical Computer Science, LIPIcs, vol. 360, 20:1-20:18.'
  mla: Chalupa, Marek, et al. “Flavors of Quantifiers in Hyperlogics.” <i>45th Annual
    Conference on Foundations of Software Technology and Theoretical Computer Science</i>,
    vol. 360, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2025, p. 20:1-20:18,
    doi:<a href="https://doi.org/10.4230/LIPICS.FSTTCS.2025.20">10.4230/LIPICS.FSTTCS.2025.20</a>.
  short: M. Chalupa, T.A. Henzinger, A.A. Oliveira da Costa, in:, 45th Annual Conference
    on Foundations of Software Technology and Theoretical Computer Science, Schloss
    Dagstuhl - Leibniz-Zentrum für Informatik, 2025, p. 20:1-20:18.
conference:
  end_date: 2025-12-19
  location: Pilani, India
  name: 'FSTTCS: Conference on Foundations of Software Technology and Theoretical
    Computer Science'
  start_date: 2025-12-17
corr_author: '1'
date_created: 2026-01-29T15:39:15Z
date_published: 2025-12-09T00:00:00Z
date_updated: 2026-02-11T09:35:04Z
day: '09'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.4230/LIPICS.FSTTCS.2025.20
ec_funded: 1
external_id:
  arxiv:
  - '2510.12298'
file:
- access_level: open_access
  checksum: 8188ee5c7b14193d48eeb655e9bbdc47
  content_type: application/pdf
  creator: dernst
  date_created: 2026-02-11T09:33:20Z
  date_updated: 2026-02-11T09:33:20Z
  file_id: '21213'
  file_name: 2025_LIPIcS_Chalupa.pdf
  file_size: 933970
  relation: main_file
  success: 1
file_date_updated: 2026-02-11T09:33:20Z
has_accepted_license: '1'
intvolume: '       360'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 20:1-20:18
project:
- _id: 34a1b658-11ca-11ed-8bc3-c75229f0241e
  grant_number: F8502
  name: Interface Theory for Security and Privacy
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
publication: 45th Annual Conference on Foundations of Software Technology and Theoretical
  Computer Science
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
scopus_import: '1'
status: public
title: Flavors of quantifiers in hyperlogics
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 360
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '21090'
abstract:
- lang: eng
  text: Fairness in AI is traditionally studied as a static property evaluated once,
    over a fixed dataset. However, real-world AI systems operate sequentially, with
    outcomes and environments evolving over time. This paper proposes a framework
    for analysing fairness as a runtime property. Using a minimal yet expressive model
    based on sequences of coin tosses with possibly evolving biases, we study the
    problems of monitoring and enforcing fairness expressed in either toss outcomes
    or coin biases. Since there is no one-size-fits-all solution for either problem,
    we provide a summary of monitoring and enforcement strategies, parametrised by
    environment dynamics, prediction horizon, and confidence thresholds. For both
    problems, we present general results under simple or minimal assumptions. We survey
    existing solutions for the monitoring problem for Markovian and additive dynamics,
    and existing solutions for the enforcement problem in static settings with known
    dynamics.
acknowledgement: 'This work is supported by the European Research Council under Grant
  No.: ERC-2020-AdG 101020093.'
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Filip
  full_name: Cano Cordoba, Filip
  id: 708cad98-e86a-11ef-8098-bdae2d7c6af1
  last_name: Cano Cordoba
  orcid: 0000-0002-0783-904X
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Konstantin
  full_name: Kueffner, Konstantin
  id: 8121a2d0-dc85-11ea-9058-af578f3b4515
  last_name: Kueffner
  orcid: 0000-0001-8974-2542
citation:
  ama: 'Cano Cordoba F, Henzinger TA, Kueffner K. Algorithmic fairness: A runtime
    perspective. In: <i>25th International Conference on Runtime Verification</i>.
    Vol 16087. Springer Nature; 2025:1-21. doi:<a href="https://doi.org/10.1007/978-3-032-05435-7_1">10.1007/978-3-032-05435-7_1</a>'
  apa: 'Cano Cordoba, F., Henzinger, T. A., &#38; Kueffner, K. (2025). Algorithmic
    fairness: A runtime perspective. In <i>25th International Conference on Runtime
    Verification</i> (Vol. 16087, pp. 1–21). Graz, Austria: Springer Nature. <a href="https://doi.org/10.1007/978-3-032-05435-7_1">https://doi.org/10.1007/978-3-032-05435-7_1</a>'
  chicago: 'Cano Cordoba, Filip, Thomas A Henzinger, and Konstantin Kueffner. “Algorithmic
    Fairness: A Runtime Perspective.” In <i>25th International Conference on Runtime
    Verification</i>, 16087:1–21. Springer Nature, 2025. <a href="https://doi.org/10.1007/978-3-032-05435-7_1">https://doi.org/10.1007/978-3-032-05435-7_1</a>.'
  ieee: 'F. Cano Cordoba, T. A. Henzinger, and K. Kueffner, “Algorithmic fairness:
    A runtime perspective,” in <i>25th International Conference on Runtime Verification</i>,
    Graz, Austria, 2025, vol. 16087, pp. 1–21.'
  ista: 'Cano Cordoba F, Henzinger TA, Kueffner K. 2025. Algorithmic fairness: A runtime
    perspective. 25th International Conference on Runtime Verification. RV: Runtime
    Verification, LNCS, vol. 16087, 1–21.'
  mla: 'Cano Cordoba, Filip, et al. “Algorithmic Fairness: A Runtime Perspective.”
    <i>25th International Conference on Runtime Verification</i>, vol. 16087, Springer
    Nature, 2025, pp. 1–21, doi:<a href="https://doi.org/10.1007/978-3-032-05435-7_1">10.1007/978-3-032-05435-7_1</a>.'
  short: F. Cano Cordoba, T.A. Henzinger, K. Kueffner, in:, 25th International Conference
    on Runtime Verification, Springer Nature, 2025, pp. 1–21.
conference:
  end_date: 2025-09-19
  location: Graz, Austria
  name: 'RV: Runtime Verification'
  start_date: 2025-09-15
corr_author: '1'
date_created: 2026-01-29T16:01:41Z
date_published: 2025-09-13T00:00:00Z
date_updated: 2026-02-16T11:57:00Z
day: '13'
department:
- _id: ToHe
doi: 10.1007/978-3-032-05435-7_1
ec_funded: 1
external_id:
  arxiv:
  - '2507.20711'
intvolume: '     16087'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2507.20711
month: '09'
oa: 1
oa_version: Preprint
page: 1-21
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
publication: 25th International Conference on Runtime Verification
publication_identifier:
  eisbn:
  - '9783032054357'
  eissn:
  - 1611-3349
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: 'Algorithmic fairness: A runtime perspective'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16087
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '21091'
abstract:
- lang: eng
  text: Neural certificates have emerged as a powerful tool in cyber-physical systems
    control, providing witnesses of correctness. These certificates, such as barrier
    functions, often learned alongside control policies, once verified, serve as mathematical
    proofs of system safety. However, traditional formal verification of their defining
    conditions typically faces scalability challenges due to exhaustive state-space
    exploration. To address this challenge, we propose a lightweight runtime monitoring
    framework that integrates real-time verification and does not require access to
    the underlying control policy. Our monitor observes the system during deployment
    and performs on-the-fly verification of the certificate over a lookahead region
    to ensure safety within a finite prediction horizon. We instantiate this framework
    for ReLU-based control barrier functions and demonstrate its practical effectiveness
    in a case study. Our approach enables timely detection of safety violations and
    incorrect certificates with minimal overhead, providing an effective but lightweight
    alternative to the static verification of the certificates.
acknowledgement: 'This work is supported by the European Research Council under Grant
  No.: ERC-2020-AdG 101020093.'
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Konstantin
  full_name: Kueffner, Konstantin
  id: 8121a2d0-dc85-11ea-9058-af578f3b4515
  last_name: Kueffner
  orcid: 0000-0001-8974-2542
- first_name: Zhengqi
  full_name: Yu, Zhengqi
  id: 20aa2ae8-f2f1-11ed-bbfa-8205053f1342
  last_name: Yu
  orcid: 0000-0002-4993-773X
citation:
  ama: 'Henzinger TA, Kueffner K, Yu E. Formal verification of neural certificates
    done dynamically. In: <i>25th International Conference on Runtime Verification</i>.
    Vol 16087. Springer Nature; 2025:54-72. doi:<a href="https://doi.org/10.1007/978-3-032-05435-7_4">10.1007/978-3-032-05435-7_4</a>'
  apa: 'Henzinger, T. A., Kueffner, K., &#38; Yu, E. (2025). Formal verification of
    neural certificates done dynamically. In <i>25th International Conference on Runtime
    Verification</i> (Vol. 16087, pp. 54–72). Graz, Austria: Springer Nature. <a href="https://doi.org/10.1007/978-3-032-05435-7_4">https://doi.org/10.1007/978-3-032-05435-7_4</a>'
  chicago: Henzinger, Thomas A, Konstantin Kueffner, and Emily Yu. “Formal Verification
    of Neural Certificates Done Dynamically.” In <i>25th International Conference
    on Runtime Verification</i>, 16087:54–72. Springer Nature, 2025. <a href="https://doi.org/10.1007/978-3-032-05435-7_4">https://doi.org/10.1007/978-3-032-05435-7_4</a>.
  ieee: T. A. Henzinger, K. Kueffner, and E. Yu, “Formal verification of neural certificates
    done dynamically,” in <i>25th International Conference on Runtime Verification</i>,
    Graz, Austria, 2025, vol. 16087, pp. 54–72.
  ista: 'Henzinger TA, Kueffner K, Yu E. 2025. Formal verification of neural certificates
    done dynamically. 25th International Conference on Runtime Verification. RV: Runtime
    Verification, LNCS, vol. 16087, 54–72.'
  mla: Henzinger, Thomas A., et al. “Formal Verification of Neural Certificates Done
    Dynamically.” <i>25th International Conference on Runtime Verification</i>, vol.
    16087, Springer Nature, 2025, pp. 54–72, doi:<a href="https://doi.org/10.1007/978-3-032-05435-7_4">10.1007/978-3-032-05435-7_4</a>.
  short: T.A. Henzinger, K. Kueffner, E. Yu, in:, 25th International Conference on
    Runtime Verification, Springer Nature, 2025, pp. 54–72.
conference:
  end_date: 2025-09-19
  location: Graz, Austria
  name: 'RV: Runtime Verification'
  start_date: 2025-09-15
corr_author: '1'
date_created: 2026-01-29T16:03:01Z
date_published: 2025-09-13T00:00:00Z
date_updated: 2026-02-16T11:53:25Z
day: '13'
department:
- _id: ToHe
doi: 10.1007/978-3-032-05435-7_4
ec_funded: 1
external_id:
  arxiv:
  - '2507.11987'
intvolume: '     16087'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2507.11987
month: '09'
oa: 1
oa_version: Preprint
page: 54-72
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
publication: 25th International Conference on Runtime Verification
publication_identifier:
  eisbn:
  - '9783032054357'
  eissn:
  - 1611-3349
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Formal verification of neural certificates done dynamically
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16087
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '21092'
abstract:
- lang: eng
  text: Formal verification provides assurances that a probabilistic system satisfies
    its specification—conditioned on the system model being aligned with reality.
    We propose alignment monitoring to watch that this assumption is justified. We
    consider a probabilistic model well aligned if it accurately predicts the behaviour
    of an uncertain system in advance. An alignment score measures this by quantifying
    the similarity between the model’s predicted and the system’s (unknown) actual
    distributions. An alignment monitor observes the system at runtime; at each point
    in time it uses the current state and the model to predict the next state. After
    the next state is observed, the monitor updates the verdict, which is a high-probability
    interval estimate for the true alignment score. We utilize tools from sequential
    forecasting to construct our alignment monitors. Besides a monitor for measuring
    the expected alignment score, we introduce a differential alignment monitor, designed
    for comparing two models, and a weighted alignment monitor, which permits task-specific
    alignment monitoring. We evaluate our monitors experimentally on the PRISM benchmark
    suite. They are fast, memory-efficient, and detect misalignment early.
acknowledgement: 'This work is supported by the European Research Council under Grant
  No.: ERC-2020-AdG 101020093.'
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Konstantin
  full_name: Kueffner, Konstantin
  id: 8121a2d0-dc85-11ea-9058-af578f3b4515
  last_name: Kueffner
  orcid: 0000-0001-8974-2542
- first_name: Vasu
  full_name: Singh, Vasu
  id: 4DAE2708-F248-11E8-B48F-1D18A9856A87
  last_name: Singh
- first_name: I
  full_name: Sun, I
  last_name: Sun
citation:
  ama: 'Henzinger TA, Kueffner K, Singh V, Sun I. Alignment monitoring. In: <i>25th
    International Conference on Runtime Verification</i>. Vol 16087. Springer Nature;
    2025:140-159. doi:<a href="https://doi.org/10.1007/978-3-032-05435-7_9">10.1007/978-3-032-05435-7_9</a>'
  apa: 'Henzinger, T. A., Kueffner, K., Singh, V., &#38; Sun, I. (2025). Alignment
    monitoring. In <i>25th International Conference on Runtime Verification</i> (Vol.
    16087, pp. 140–159). Graz, Austria: Springer Nature. <a href="https://doi.org/10.1007/978-3-032-05435-7_9">https://doi.org/10.1007/978-3-032-05435-7_9</a>'
  chicago: Henzinger, Thomas A, Konstantin Kueffner, Vasu Singh, and I Sun. “Alignment
    Monitoring.” In <i>25th International Conference on Runtime Verification</i>,
    16087:140–59. Springer Nature, 2025. <a href="https://doi.org/10.1007/978-3-032-05435-7_9">https://doi.org/10.1007/978-3-032-05435-7_9</a>.
  ieee: T. A. Henzinger, K. Kueffner, V. Singh, and I. Sun, “Alignment monitoring,”
    in <i>25th International Conference on Runtime Verification</i>, Graz, Austria,
    2025, vol. 16087, pp. 140–159.
  ista: 'Henzinger TA, Kueffner K, Singh V, Sun I. 2025. Alignment monitoring. 25th
    International Conference on Runtime Verification. RV: Runtime Verification, LNCS,
    vol. 16087, 140–159.'
  mla: Henzinger, Thomas A., et al. “Alignment Monitoring.” <i>25th International
    Conference on Runtime Verification</i>, vol. 16087, Springer Nature, 2025, pp.
    140–59, doi:<a href="https://doi.org/10.1007/978-3-032-05435-7_9">10.1007/978-3-032-05435-7_9</a>.
  short: T.A. Henzinger, K. Kueffner, V. Singh, I. Sun, in:, 25th International Conference
    on Runtime Verification, Springer Nature, 2025, pp. 140–159.
conference:
  end_date: 2025-09-19
  location: Graz, Austria
  name: 'RV: Runtime Verification'
  start_date: 2025-09-15
corr_author: '1'
date_created: 2026-01-29T16:03:43Z
date_published: 2025-09-13T00:00:00Z
date_updated: 2026-02-16T11:56:38Z
day: '13'
department:
- _id: ToHe
doi: 10.1007/978-3-032-05435-7_9
ec_funded: 1
external_id:
  arxiv:
  - '2508.00021'
intvolume: '     16087'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2508.00021
month: '09'
oa: 1
oa_version: Preprint
page: 140-159
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
publication: 25th International Conference on Runtime Verification
publication_identifier:
  eisbn:
  - '9783032054357'
  eissn:
  - 1611-3349
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Alignment monitoring
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16087
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '21093'
abstract:
- lang: eng
  text: We propose a monitoring approach for hyperproperties where the system’s observations
    range over infinite domains. The specifications are given as formulas of symbolic
    hypernode logic, an extension of earlier versions of hypernode logic that supports
    events with data. We demonstrate how to translate terms of symbolic hypernode
    logic into multi-tape symbolic transducers and we present a monitoring algorithm
    for universally quantified formulas that is based on this translation. We evaluate
    our approach against the previous approach for monitoring hypernode logic, and
    we also compare it to other monitors for hyperproperties.
acknowledgement: This work was supported in part by the ERC-2020-AdG 101020093 and
  in part by the FWF-2022-SFB F8502 (SPyCoDe).
alternative_title:
- LNCS
article_processing_charge: No
arxiv: 1
author:
- first_name: Marek
  full_name: Chalupa, Marek
  id: 87e34708-d6c6-11ec-9f5b-9391e7be2463
  last_name: Chalupa
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Ana A
  full_name: Oliveira da Costa, Ana A
  id: 8b282559-50b0-11ef-861e-d6ace0d92e9b
  last_name: Oliveira da Costa
citation:
  ama: 'Chalupa M, Henzinger TA, Oliveira da Costa AA. Monitoring hypernode logic
    over infinite domains. In: <i>25th International Conference on Runtime Verification</i>.
    Vol 16087. Springer Nature; 2025:417-437. doi:<a href="https://doi.org/10.1007/978-3-032-05435-7_23">10.1007/978-3-032-05435-7_23</a>'
  apa: 'Chalupa, M., Henzinger, T. A., &#38; Oliveira da Costa, A. A. (2025). Monitoring
    hypernode logic over infinite domains. In <i>25th International Conference on
    Runtime Verification</i> (Vol. 16087, pp. 417–437). Graz, Austria: Springer Nature.
    <a href="https://doi.org/10.1007/978-3-032-05435-7_23">https://doi.org/10.1007/978-3-032-05435-7_23</a>'
  chicago: Chalupa, Marek, Thomas A Henzinger, and Ana A Oliveira da Costa. “Monitoring
    Hypernode Logic over Infinite Domains.” In <i>25th International Conference on
    Runtime Verification</i>, 16087:417–37. Springer Nature, 2025. <a href="https://doi.org/10.1007/978-3-032-05435-7_23">https://doi.org/10.1007/978-3-032-05435-7_23</a>.
  ieee: M. Chalupa, T. A. Henzinger, and A. A. Oliveira da Costa, “Monitoring hypernode
    logic over infinite domains,” in <i>25th International Conference on Runtime Verification</i>,
    Graz, Austria, 2025, vol. 16087, pp. 417–437.
  ista: 'Chalupa M, Henzinger TA, Oliveira da Costa AA. 2025. Monitoring hypernode
    logic over infinite domains. 25th International Conference on Runtime Verification.
    RV: Runtime Verification, LNCS, vol. 16087, 417–437.'
  mla: Chalupa, Marek, et al. “Monitoring Hypernode Logic over Infinite Domains.”
    <i>25th International Conference on Runtime Verification</i>, vol. 16087, Springer
    Nature, 2025, pp. 417–37, doi:<a href="https://doi.org/10.1007/978-3-032-05435-7_23">10.1007/978-3-032-05435-7_23</a>.
  short: M. Chalupa, T.A. Henzinger, A.A. Oliveira da Costa, in:, 25th International
    Conference on Runtime Verification, Springer Nature, 2025, pp. 417–437.
conference:
  end_date: 2025-09-19
  location: Graz, Austria
  name: 'RV: Runtime Verification'
  start_date: 2025-09-15
corr_author: '1'
date_created: 2026-01-29T16:04:31Z
date_published: 2025-09-13T00:00:00Z
date_updated: 2026-02-16T11:59:20Z
day: '13'
department:
- _id: ToHe
doi: 10.1007/978-3-032-05435-7_23
ec_funded: 1
external_id:
  arxiv:
  - '2508.02301'
intvolume: '     16087'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2508.02301
month: '09'
oa: 1
oa_version: Preprint
page: 417-437
project:
- _id: 62781420-2b32-11ec-9570-8d9b63373d4d
  call_identifier: H2020
  grant_number: '101020093'
  name: Vigilant Algorithmic Monitoring of Software
- _id: 34a1b658-11ca-11ed-8bc3-c75229f0241e
  grant_number: F8502
  name: Interface Theory for Security and Privacy
publication: 25th International Conference on Runtime Verification
publication_identifier:
  eisbn:
  - '9783032054357'
  eissn:
  - 1611-3349
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Monitoring hypernode logic over infinite domains
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16087
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21121'
abstract:
- lang: eng
  text: The relation between the masses of supermassive black holes (SMBHs) and their
    host galaxies encodes information on their mode of growth, especially at the earliest
    epochs. The James Webb Space Telescope (JWST) has opened such investigations by
    detecting the host galaxies of active galactic nuclei (AGN) and more luminous
    quasars within the first billion years of the Universe (z ≳ 6). Here, we evaluate
    the relation between the mass of SMBHs and the total stellar mass of their host
    galaxies using a sample of nine quasars at 6.18 ≤ z ≤ 6.4 from the Subaru High-z
    Exploration of Low-luminosity Quasars survey with NIRCam and NIRSpec observations.
    We find that the observed location of these quasars in the SMBH–galaxy mass plane
    (logMBH/M 8–9; logM*/M 9.5–11) is consistent with a nonevolving intrinsic mass
    relation with dispersion (0.80 +0.23 -0.28 dex) higher than the local value (∼0.3–0.4
    dex) of their more massive descendants. Our analysis is based on a forward model
    of systematics and includes a consideration of the impact of selection effects
    and measurement uncertainties with an assumption on the slope of the mass relation.
    While degeneracies between parameters persist, the best-fit solution has a reasonable
    AGN fraction (2.3%) of galaxies at z ∼ 6 with an actively growing UV-unobscured
    black hole. In particular, models with a substantially higher normalisation in
    MBH would require an unrealistically low intrinsic dispersion (∼0.22 dex). Consequently,
    our results predict a large population of AGN at lower black hole masses, as are
    now just starting to be discovered in focused efforts with JWST.
acknowledgement: 'This work is based on observations made with the NASA/ESA/CSA James
  Webb Space Telescope. The data were obtained from the Mikulski Archive for Space
  Telescopes at the Space Telescope Science Institute, which is operated by the Association
  of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127
  for JWST. These observations are associated with programs GO #1967 and GO #3859.
  The specific observations analyzed can be accessed via DOI: 10.17909/719q-cn32.
  Support for these programs was provided by NASA through a grant from the Space Telescope
  Science Institute, which is operated by the Association of Universities for Research
  in Astronomy, Inc., under NASA contract NAS 5-03127. This work was supported by
  World Premier International Research Center Initiative (WPI), MEXT, Japan. This
  work used computing resources at Kavli IPMU. J.S. is supported by JSPS KAKENHI (JP22H01262).
  M.O. is supported by the Japan Society for the Promotion of Science (JSPS) KAKENHI
  grant No. 24K22894. Y.M. was supported by the Japan Society for the Promotion of
  Science (JSPS) KAKENHI grant No. 21H04494. M.V. gratefully acknowledges financial
  support from the Independent Research Fund Denmark via grant numbers DFF 8021-00130
  and 3103-00146 and from the Carlsberg Foundation via grant CF23-0417. S.E.I.B. is
  supported by the Deutsche Forschungsgemeinschaft (DFG) under Emmy Noether grant
  number BO 5771/1-1. K.I. acknowledges support from the National Natural Science
  Foundation of China (12073003, 11721303, 11991052). K.I. acknowledges support under
  the grant PID2022-136827NB-C44 provided by MCIN/AEI/10.13039/501100011033 / FEDER,
  UE. A.L. acknowledges support from PRIN MUR 2022— Project “2022935STW.” J.T.S. is
  supported by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)—project
  number 518006966. F.W. acknowledges support from NSF award AST-2513040. M.H. acknowledges
  support from the FNS under the SNSF starting grant 218032. B.T. acknowledges support
  from the European Research Council (ERC) under the European Union’s Horizon 2020
  research and innovation program (grant agreement number 950533) and from the Excellence
  Cluster ORIGINS, which is funded by the Deutsche Forschungsgemeinschaft (DFG, German
  Research Foundation) under Germany’s Excellence Strategy—EXC 2094—390783311.'
article_number: L67
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: John David
  full_name: Silverman, John David
  last_name: Silverman
- first_name: Junyao
  full_name: Li, Junyao
  last_name: Li
- first_name: Xuheng
  full_name: Ding, Xuheng
  last_name: Ding
- first_name: Masafusa
  full_name: Onoue, Masafusa
  last_name: Onoue
- first_name: Michael A.
  full_name: Strauss, Michael A.
  last_name: Strauss
- first_name: Yoshiki
  full_name: Matsuoka, Yoshiki
  last_name: Matsuoka
- first_name: Takuma
  full_name: Izumi, Takuma
  last_name: Izumi
- first_name: Knud
  full_name: Jahnke, Knud
  last_name: Jahnke
- first_name: Tommaso
  full_name: Treu, Tommaso
  last_name: Treu
- first_name: Marta
  full_name: Volonteri, Marta
  last_name: Volonteri
- first_name: Camryn L.
  full_name: Phillips, Camryn L.
  last_name: Phillips
- first_name: Irham T.
  full_name: Andika, Irham T.
  last_name: Andika
- first_name: Kentaro
  full_name: Aoki, Kentaro
  last_name: Aoki
- first_name: Junya
  full_name: Arita, Junya
  last_name: Arita
- first_name: Shunsuke
  full_name: Baba, Shunsuke
  last_name: Baba
- first_name: Sarah E. I.
  full_name: Bosman, Sarah E. I.
  last_name: Bosman
- first_name: Anna-Christina
  full_name: Eilers, Anna-Christina
  last_name: Eilers
- first_name: Xiaohui
  full_name: Fan, Xiaohui
  last_name: Fan
- first_name: Seiji
  full_name: Fujimoto, Seiji
  last_name: Fujimoto
- first_name: Melanie
  full_name: Habouzit, Melanie
  last_name: Habouzit
- first_name: Zoltán
  full_name: Haiman, Zoltán
  id: 7c006e8c-cc0d-11ee-8322-cb904ef76f36
  last_name: Haiman
  orcid: 0000-0003-3633-5403
- first_name: Masatoshi
  full_name: Imanishi, Masatoshi
  last_name: Imanishi
- first_name: Kohei
  full_name: Inayoshi, Kohei
  last_name: Inayoshi
- first_name: Kazushi
  full_name: Iwasawa, Kazushi
  last_name: Iwasawa
- first_name: Nobunari
  full_name: Kashikawa, Nobunari
  last_name: Kashikawa
- first_name: Toshihiro
  full_name: Kawaguchi, Toshihiro
  last_name: Kawaguchi
- first_name: Chien-Hsiu
  full_name: Lee, Chien-Hsiu
  last_name: Lee
- first_name: Alessandro
  full_name: Lupi, Alessandro
  last_name: Lupi
- first_name: Tohru
  full_name: Nagao, Tohru
  last_name: Nagao
- first_name: Jan-Torge
  full_name: Schindler, Jan-Torge
  last_name: Schindler
- first_name: Malte
  full_name: Schramm, Malte
  last_name: Schramm
- first_name: Kazuhiro
  full_name: Shimasaku, Kazuhiro
  last_name: Shimasaku
- first_name: Yoshiki
  full_name: Toba, Yoshiki
  last_name: Toba
- first_name: Benny
  full_name: Trakhtenbrot, Benny
  last_name: Trakhtenbrot
- first_name: Hideki
  full_name: Umehata, Hideki
  last_name: Umehata
- first_name: Marianne
  full_name: Vestergaard, Marianne
  last_name: Vestergaard
- first_name: Fabian
  full_name: Walter, Fabian
  last_name: Walter
- first_name: Feige
  full_name: Wang, Feige
  last_name: Wang
- first_name: Jinyi
  full_name: Yang, Jinyi
  last_name: Yang
citation:
  ama: Silverman JD, Li J, Ding X, et al. SHELLQs–JWST perspective on the intrinsic
    mass relation between supermassive black holes and their host galaxies at z &#62;
    6. <i>The Astrophysical Journal Letters</i>. 2025;995(2). doi:<a href="https://doi.org/10.3847/2041-8213/ae279c">10.3847/2041-8213/ae279c</a>
  apa: Silverman, J. D., Li, J., Ding, X., Onoue, M., Strauss, M. A., Matsuoka, Y.,
    … Yang, J. (2025). SHELLQs–JWST perspective on the intrinsic mass relation between
    supermassive black holes and their host galaxies at z &#62; 6. <i>The Astrophysical
    Journal Letters</i>. IOP Publishing. <a href="https://doi.org/10.3847/2041-8213/ae279c">https://doi.org/10.3847/2041-8213/ae279c</a>
  chicago: Silverman, John David, Junyao Li, Xuheng Ding, Masafusa Onoue, Michael
    A. Strauss, Yoshiki Matsuoka, Takuma Izumi, et al. “SHELLQs–JWST Perspective on
    the Intrinsic Mass Relation between Supermassive Black Holes and Their Host Galaxies
    at z &#62; 6.” <i>The Astrophysical Journal Letters</i>. IOP Publishing, 2025.
    <a href="https://doi.org/10.3847/2041-8213/ae279c">https://doi.org/10.3847/2041-8213/ae279c</a>.
  ieee: J. D. Silverman <i>et al.</i>, “SHELLQs–JWST perspective on the intrinsic
    mass relation between supermassive black holes and their host galaxies at z &#62;
    6,” <i>The Astrophysical Journal Letters</i>, vol. 995, no. 2. IOP Publishing,
    2025.
  ista: Silverman JD, Li J, Ding X, Onoue M, Strauss MA, Matsuoka Y, Izumi T, Jahnke
    K, Treu T, Volonteri M, Phillips CL, Andika IT, Aoki K, Arita J, Baba S, Bosman
    SEI, Eilers A-C, Fan X, Fujimoto S, Habouzit M, Haiman Z, Imanishi M, Inayoshi
    K, Iwasawa K, Kashikawa N, Kawaguchi T, Lee C-H, Lupi A, Nagao T, Schindler J-T,
    Schramm M, Shimasaku K, Toba Y, Trakhtenbrot B, Umehata H, Vestergaard M, Walter
    F, Wang F, Yang J. 2025. SHELLQs–JWST perspective on the intrinsic mass relation
    between supermassive black holes and their host galaxies at z &#62; 6. The Astrophysical
    Journal Letters. 995(2), L67.
  mla: Silverman, John David, et al. “SHELLQs–JWST Perspective on the Intrinsic Mass
    Relation between Supermassive Black Holes and Their Host Galaxies at z &#62; 6.”
    <i>The Astrophysical Journal Letters</i>, vol. 995, no. 2, L67, IOP Publishing,
    2025, doi:<a href="https://doi.org/10.3847/2041-8213/ae279c">10.3847/2041-8213/ae279c</a>.
  short: J.D. Silverman, J. Li, X. Ding, M. Onoue, M.A. Strauss, Y. Matsuoka, T. Izumi,
    K. Jahnke, T. Treu, M. Volonteri, C.L. Phillips, I.T. Andika, K. Aoki, J. Arita,
    S. Baba, S.E.I. Bosman, A.-C. Eilers, X. Fan, S. Fujimoto, M. Habouzit, Z. Haiman,
    M. Imanishi, K. Inayoshi, K. Iwasawa, N. Kashikawa, T. Kawaguchi, C.-H. Lee, A.
    Lupi, T. Nagao, J.-T. Schindler, M. Schramm, K. Shimasaku, Y. Toba, B. Trakhtenbrot,
    H. Umehata, M. Vestergaard, F. Walter, F. Wang, J. Yang, The Astrophysical Journal
    Letters 995 (2025).
date_created: 2026-01-31T09:27:53Z
date_published: 2025-12-17T00:00:00Z
date_updated: 2026-02-10T07:02:39Z
day: '17'
ddc:
- '520'
department:
- _id: ZoHa
doi: 10.3847/2041-8213/ae279c
external_id:
  arxiv:
  - '2507.23066'
file:
- access_level: open_access
  checksum: e38c0c444be9c1507eec28c62ce04cbc
  content_type: application/pdf
  creator: dernst
  date_created: 2026-02-10T06:56:37Z
  date_updated: 2026-02-10T06:56:37Z
  file_id: '21202'
  file_name: 2025_AstrophysicalJounalLetters_Silvermann.pdf
  file_size: 997137
  relation: main_file
  success: 1
file_date_updated: 2026-02-10T06:56:37Z
has_accepted_license: '1'
intvolume: '       995'
issue: '2'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal Letters
publication_identifier:
  eissn:
  - 2041-8213
  issn:
  - 2041-8205
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
status: public
title: SHELLQs–JWST perspective on the intrinsic mass relation between supermassive
  black holes and their host galaxies at z > 6
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 995
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21122'
abstract:
- lang: eng
  text: The multimessenger combination of gravitational waves (GWs) from merging massive
    black hole binaries (MBHBs) and the electromagnetic (EM) counterpart from the
    surrounding circumbinary disc (CBD) will open avenues to new scientific pursuits.
    In order to realize this science, we need to correctly localize the host galaxy
    of the merging MBHB. Multiwavelength, time-dependent EM signatures can greatly
    facilitate the identification of the unique EM counterpart among many sources
    in LISA’s localization volume. To this end, we studied merging unequal-mass MBHBs
    embedded in a CBD using high-resolution 2D simulations, with a $\Gamma$-law equation of
    state, incorporating viscous heating, shock heating, and radiative cooling. We
    simulate each binary starting from before it decouples from the CBD until just
    after the merger. We compute EM signatures and identify distinct features before,
    during, and after the merger. We corroborate previous findings of a several orders
    of magnitude drop in the thermal X-ray luminosity near the time of merger, but
    with delayed timing compared to an equal-mass system. The source remains X-ray
    dark for hours post-merger. Our main results are a potential new signature of
    a sharp spike in the thermal X-ray emission just before the tell-tale steep drop
    occurs. This feature may further help to identify EM counterparts of LISA’s unequal
    MBHBs before merger without the need for extensive pre-merger monitoring. Additionally,
    we find a role-reversal in which the primary out-accretes the secondary during
    late inspiral, which may diminish signatures originating from Doppler modulation.
acknowledgement: 'We acknowledge support from the Nationale Wetenschapsagenda Roadmap
  grant ‘Gravitational Waves Laser Interferometer Space Antenna/Einstein Telescope:
  Shivers from the Deep Universe: A National Infrastructure for Gravitational Wave
  Research’ (LMK), National Science Foundation grant AST-2006176 (ZH), and National
  Aeronautics and Space Administration Astrophysics Theory Program grant 80NSSC22K0822
  (AM and ZH). JD was supported by National Aeronautics and Space Administration through
  the National Aeronautics and Space Administration Hubble Fellowship grant HST-HF2-51552.001A,
  awarded by the Space Telescope Science Institute, which is operated by the Association
  of Universities for Research in Astronomy, Incorporated, under National Aeronautics
  and Space Administration contract NAS5-26555. This research was supported in part
  by the National Science Foundation under grant no. NSF PHY-1748958. This research
  has made use of National Aeronautics and Space Administration’s Astrophysics Data
  System. Resources supporting this work were provided by the National Aeronautics
  and Space Administration High-End Computing (HEC) Program through the National Aeronautics
  and Space Administration Advanced Supercomputing (NAS) Division at Ames Research
  Center. Software:  python (Oliphant 2007; Millman & Aivazis 2011), scipy (Jones
  et al. 2001), numpy (van der Walt, Colbert & Varoquaux 2011), and matplotlib (Hunter
  2007).'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Luke Major
  full_name: Krauth, Luke Major
  last_name: Krauth
- first_name: Jordy
  full_name: Davelaar, Jordy
  last_name: Davelaar
- first_name: Zoltán
  full_name: Haiman, Zoltán
  id: 7c006e8c-cc0d-11ee-8322-cb904ef76f36
  last_name: Haiman
  orcid: 0000-0003-3633-5403
- first_name: John Ryan
  full_name: Westernacher-Schneider, John Ryan
  last_name: Westernacher-Schneider
- first_name: Jonathan
  full_name: Zrake, Jonathan
  last_name: Zrake
- first_name: Andrew
  full_name: MacFadyen, Andrew
  last_name: MacFadyen
citation:
  ama: Krauth LM, Davelaar J, Haiman Z, Westernacher-Schneider JR, Zrake J, MacFadyen
    A. Thermal X-ray signatures in late-stage unequal-mass massive black hole binary
    mergers. <i>Monthly Notices of the Royal Astronomical Society</i>. 2025;543(3):2670-2685.
    doi:<a href="https://doi.org/10.1093/mnras/staf1583">10.1093/mnras/staf1583</a>
  apa: Krauth, L. M., Davelaar, J., Haiman, Z., Westernacher-Schneider, J. R., Zrake,
    J., &#38; MacFadyen, A. (2025). Thermal X-ray signatures in late-stage unequal-mass
    massive black hole binary mergers. <i>Monthly Notices of the Royal Astronomical
    Society</i>. Oxford University Press. <a href="https://doi.org/10.1093/mnras/staf1583">https://doi.org/10.1093/mnras/staf1583</a>
  chicago: Krauth, Luke Major, Jordy Davelaar, Zoltán Haiman, John Ryan Westernacher-Schneider,
    Jonathan Zrake, and Andrew MacFadyen. “Thermal X-Ray Signatures in Late-Stage
    Unequal-Mass Massive Black Hole Binary Mergers.” <i>Monthly Notices of the Royal
    Astronomical Society</i>. Oxford University Press, 2025. <a href="https://doi.org/10.1093/mnras/staf1583">https://doi.org/10.1093/mnras/staf1583</a>.
  ieee: L. M. Krauth, J. Davelaar, Z. Haiman, J. R. Westernacher-Schneider, J. Zrake,
    and A. MacFadyen, “Thermal X-ray signatures in late-stage unequal-mass massive
    black hole binary mergers,” <i>Monthly Notices of the Royal Astronomical Society</i>,
    vol. 543, no. 3. Oxford University Press, pp. 2670–2685, 2025.
  ista: Krauth LM, Davelaar J, Haiman Z, Westernacher-Schneider JR, Zrake J, MacFadyen
    A. 2025. Thermal X-ray signatures in late-stage unequal-mass massive black hole
    binary mergers. Monthly Notices of the Royal Astronomical Society. 543(3), 2670–2685.
  mla: Krauth, Luke Major, et al. “Thermal X-Ray Signatures in Late-Stage Unequal-Mass
    Massive Black Hole Binary Mergers.” <i>Monthly Notices of the Royal Astronomical
    Society</i>, vol. 543, no. 3, Oxford University Press, 2025, pp. 2670–85, doi:<a
    href="https://doi.org/10.1093/mnras/staf1583">10.1093/mnras/staf1583</a>.
  short: L.M. Krauth, J. Davelaar, Z. Haiman, J.R. Westernacher-Schneider, J. Zrake,
    A. MacFadyen, Monthly Notices of the Royal Astronomical Society 543 (2025) 2670–2685.
date_created: 2026-01-31T09:28:28Z
date_published: 2025-11-01T00:00:00Z
date_updated: 2026-02-10T07:10:21Z
day: '01'
ddc:
- '520'
department:
- _id: ZoHa
doi: 10.1093/mnras/staf1583
external_id:
  arxiv:
  - '2503.01494'
file:
- access_level: open_access
  checksum: f9b4c6a606df9493f6eb6af5ebcca6db
  content_type: application/pdf
  creator: dernst
  date_created: 2026-02-10T07:07:17Z
  date_updated: 2026-02-10T07:07:17Z
  file_id: '21203'
  file_name: 2025_MonthlyNoticesRAS_Krauth.pdf
  file_size: 3689696
  relation: main_file
  success: 1
file_date_updated: 2026-02-10T07:07:17Z
has_accepted_license: '1'
intvolume: '       543'
issue: '3'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 2670-2685
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
  eissn:
  - 1365-2966
  issn:
  - 0035-8711
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
status: public
title: Thermal X-ray signatures in late-stage unequal-mass massive black hole binary
  mergers
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 543
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21123'
abstract:
- lang: eng
  text: We present a study of the late-time interaction between supermassive black
    hole binaries and retrograde circumbinary disks during the period of gravitational
    wave-driven inspiral. While mergers in prograde disks have received extensive
    study, retrograde disks offer distinct dynamics that could promote mergers and
    produce unique observational signatures. Through 2D numerical hydrodynamical simulations,
    we explore the process of binary-disk decoupling, where the binary’s orbital decay
    rate is faster than the disk’s viscous response rate. We find the point of decoupling
    to be comparable in prograde and retrograde disks, suggesting that any associated
    electromagnetic (EM) signatures will be produced at comparable times preceding
    the merger. However, we find smaller central cavities for retrograde disks, likely
    leading to higher-frequency EM emissions and shorter postmerger rebrightening
    timescales compared to their prograde counterparts. Retrograde disks form intrabinary
    bridges, which are prone to instabilities when the viscosity is low. These instabilities
    manifest as quasiperiodic flares in the accretion rate, which may produce distinctive
    EM signatures for retrograde disks.
acknowledgement: 'D.J.D., C.T., and D.O.N. acknowledge support from the Danish Independent
  Research Fund through Sapere Aude Starting grant No. 121587, led by D.J.D. We are
  grateful to the anonymous referee for the insightful comments and suggestions for
  improving the manuscript. This work was also supported in part by the LISA Preparatory
  Science Program (LPS) through NASA grant 80NSSC24K0440, by NASA Astrophysics Theory
  Program (ATP) grant 80NSSC22K0822, and by the European Union’s Horizon research
  and innovation program under Marie Sklodowska-Curie grant agreement No. 101148364.
  This work made use of the following software packages: Sailfish (J. Zrake & A. MacFadyen
  2024), numpy (C. R. Harris et al. 2020), Python (G. Van Rossum & F. L. Drake 2009),
  and scipy (P. Virtanen et al. 2020; R. Gommers et al. 2024). Software citation information
  aggregated using The Software Citation Station (T. Wagg & F. S. Broekgaarden 2024;
  T. Wagg et al. 2024). The Tycho supercomputer hosted at the SCIENCE HPC center at
  the University of Copenhagen was used in this work.'
article_number: '206'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: David
  full_name: O’Neill, David
  last_name: O’Neill
- first_name: Christopher
  full_name: Tiede, Christopher
  last_name: Tiede
- first_name: Daniel J.
  full_name: D’Orazio, Daniel J.
  last_name: D’Orazio
- first_name: Zoltán
  full_name: Haiman, Zoltán
  id: 7c006e8c-cc0d-11ee-8322-cb904ef76f36
  last_name: Haiman
  orcid: 0000-0003-3633-5403
- first_name: Andrew
  full_name: MacFadyen, Andrew
  last_name: MacFadyen
citation:
  ama: O’Neill D, Tiede C, D’Orazio DJ, Haiman Z, MacFadyen A. Gravitational wave
    decoupling in retrograde circumbinary disks. <i>The Astrophysical Journal</i>.
    2025;993(2). doi:<a href="https://doi.org/10.3847/1538-4357/ae0ca8">10.3847/1538-4357/ae0ca8</a>
  apa: O’Neill, D., Tiede, C., D’Orazio, D. J., Haiman, Z., &#38; MacFadyen, A. (2025).
    Gravitational wave decoupling in retrograde circumbinary disks. <i>The Astrophysical
    Journal</i>. IOP Publishing. <a href="https://doi.org/10.3847/1538-4357/ae0ca8">https://doi.org/10.3847/1538-4357/ae0ca8</a>
  chicago: O’Neill, David, Christopher Tiede, Daniel J. D’Orazio, Zoltán Haiman, and
    Andrew MacFadyen. “Gravitational Wave Decoupling in Retrograde Circumbinary Disks.”
    <i>The Astrophysical Journal</i>. IOP Publishing, 2025. <a href="https://doi.org/10.3847/1538-4357/ae0ca8">https://doi.org/10.3847/1538-4357/ae0ca8</a>.
  ieee: D. O’Neill, C. Tiede, D. J. D’Orazio, Z. Haiman, and A. MacFadyen, “Gravitational
    wave decoupling in retrograde circumbinary disks,” <i>The Astrophysical Journal</i>,
    vol. 993, no. 2. IOP Publishing, 2025.
  ista: O’Neill D, Tiede C, D’Orazio DJ, Haiman Z, MacFadyen A. 2025. Gravitational
    wave decoupling in retrograde circumbinary disks. The Astrophysical Journal. 993(2),
    206.
  mla: O’Neill, David, et al. “Gravitational Wave Decoupling in Retrograde Circumbinary
    Disks.” <i>The Astrophysical Journal</i>, vol. 993, no. 2, 206, IOP Publishing,
    2025, doi:<a href="https://doi.org/10.3847/1538-4357/ae0ca8">10.3847/1538-4357/ae0ca8</a>.
  short: D. O’Neill, C. Tiede, D.J. D’Orazio, Z. Haiman, A. MacFadyen, The Astrophysical
    Journal 993 (2025).
date_created: 2026-01-31T09:28:50Z
date_published: 2025-11-05T00:00:00Z
date_updated: 2026-02-10T07:22:28Z
day: '05'
ddc:
- '520'
department:
- _id: ZoHa
doi: 10.3847/1538-4357/ae0ca8
external_id:
  arxiv:
  - '2501.11679'
file:
- access_level: open_access
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  content_type: application/pdf
  creator: dernst
  date_created: 2026-02-10T07:19:52Z
  date_updated: 2026-02-10T07:19:52Z
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file_date_updated: 2026-02-10T07:19:52Z
has_accepted_license: '1'
intvolume: '       993'
issue: '2'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
status: public
title: Gravitational wave decoupling in retrograde circumbinary disks
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 993
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21124'
abstract:
- lang: eng
  text: The advent of the James Webb Space Telescope (JWST) has opened new horizons
    in the study of quasar host galaxies during the reionization epoch (z > 6). Building
    upon our previous initial measurements of stellar light from two quasar host galaxies
    at these redshifts, we now report the detection of the stellar light from the
    full Cycle 1 sample of 12 distant moderate-luminosity quasar (M1450 > −24 mag)
    host galaxies at z > 6 from the Hyper Suprime-Cam Subaru Strategic Program. Using
    JWST/NIRCam observations at 1.5 and 3.6 μm combined with 2D image decomposition
    analysis, we successfully detect the host galaxies in 11 of the 12 targets, underscoring
    the high detection rates achievable with moderate-luminosity quasars. Based on
    two-band photometry and spectral energy distribution fitting, we find that our
    host galaxies are massive, with log M*/M⊙ = 9.5–11.0. The effective radii range
    from 0.6 to 3.2 kpc, comparable to the sizes of inactive galaxies with similar
    masses at z ∼ 6 as measured with imaging from COSMOS-Web. Intriguingly, the two
    quasar hosts with post-starburst features, which reside at the high-mass end of
    our sample and exhibit relatively compact morphologies, have similar size and
    stellar mass surface densities to quiescent galaxies at z ∼ 4–5. These findings
    suggest that the so-called galaxy compaction scenario is already in place at the
    reionization epoch, in which gas inflows during starburst phases drive centrally
    concentrated star formation followed by rapid quenching, bridging the structural
    transition of massive galaxies from relatively extended star-forming disks to
    compact quiescent systems.
acknowledgement: "We sincerely thank Xiaohui Fan and Shenli Tang for their valuable
  discussions and insightful suggestions.\r\n\r\nThis work is based on observations
  made with the NASA/ESA/CSA JWST. The data were obtained from the Mikulski Archive
  for Space Telescopes at the Space Telescope Science Institute, which is operated
  by the Association of Universities for Research in Astronomy, Inc., under NASA contract
  NAS 5-03127 for JWST. These observations are associated with programs GO #1967,
  GO #3859, and GO #1727. Support for these programs was provided by NASA through
  a grant from the Space Telescope Science Institute, which is operated by the Association
  of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-03127.
  This work was supported by the World Premier International Research Center Initiative
  (WPI), MEXT, Japan. This work used computing resources at Kavli IPMU. All the JWST
  data used in this paper can be found in MAST: doi:10.17909/hqaf-an74.\r\n\r\nSupport
  for this work was provided by NASA through grant JWST-GO-01727 awarded by the Space
  Telescope Science Institute, which is operated by the Association of Universities
  for Research in Astronomy, Inc., under NASA contract NAS 5-26555. X.D. is supported
  by Wuhan University's Double First-Class funding. M.O. is supported by the Japan
  Society for the Promotion of Science (JSPS) KAKENHI grant No. G24K22894. Y.M. is
  supported by the Japan Society for the Promotion of Science (JSPS) KAKENHI grant
  No. 21H04494. S.E.I.B. is supported by the Deutsche Forschungsgemeinschaft (DFG)
  under Emmy Noether grant No. B.O. 5771/1-1. J.S. is supported by JSPS KAKENHI (JP22H01262)
  and the World Premier International Research Center Initiative (WPI), MEXT, Japan.
  K.I. acknowledges support from the National Natural Science Foundation of China
  (12073003, 11721303, 11991052). A.L. acknowledges support from PRIN MUR 2022—Project
  “2022935STW” J.T.S. is supported by the Deutsche Forschungsgemeinschaft (DFG, German
  Research Foundation)—Project No. 518006966. M.V. gratefully acknowledges financial
  support from the Independent Research Fund Denmark via grant Nos. DFF 8021-00130
  and 3103-00146. K.I. acknowledges support under grant PID2022-136827NB-C44 provided
  by MCIN/AEI/10.13039/501100011033/FEDER, UE. F.W. acknowledges support from NSF
  award AST-2513040."
article_number: '91'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Xuheng
  full_name: Ding, Xuheng
  last_name: Ding
- first_name: Masafusa
  full_name: Onoue, Masafusa
  last_name: Onoue
- first_name: John D.
  full_name: Silverman, John D.
  last_name: Silverman
- first_name: Yoshiki
  full_name: Matsuoka, Yoshiki
  last_name: Matsuoka
- first_name: Takuma
  full_name: Izumi, Takuma
  last_name: Izumi
- first_name: Michael A.
  full_name: Strauss, Michael A.
  last_name: Strauss
- first_name: Lilan
  full_name: Yang, Lilan
  last_name: Yang
- first_name: Knud
  full_name: Jahnke, Knud
  last_name: Jahnke
- first_name: Camryn L.
  full_name: Phillips, Camryn L.
  last_name: Phillips
- first_name: Tommaso
  full_name: Treu, Tommaso
  last_name: Treu
- first_name: Irham T.
  full_name: Andika, Irham T.
  last_name: Andika
- first_name: Kentaro
  full_name: Aoki, Kentaro
  last_name: Aoki
- first_name: Junya
  full_name: Arita, Junya
  last_name: Arita
- first_name: Shunsuke
  full_name: Baba, Shunsuke
  last_name: Baba
- first_name: Sarah E. I.
  full_name: Bosman, Sarah E. I.
  last_name: Bosman
- first_name: Anna-Christina
  full_name: Eilers, Anna-Christina
  last_name: Eilers
- first_name: Seiji
  full_name: Fujimoto, Seiji
  last_name: Fujimoto
- first_name: Zoltán
  full_name: Haiman, Zoltán
  id: 7c006e8c-cc0d-11ee-8322-cb904ef76f36
  last_name: Haiman
  orcid: 0000-0003-3633-5403
- first_name: Masatoshi
  full_name: Imanishi, Masatoshi
  last_name: Imanishi
- first_name: Kohei
  full_name: Inayoshi, Kohei
  last_name: Inayoshi
- first_name: Kazushi
  full_name: Iwasawa, Kazushi
  last_name: Iwasawa
- first_name: Jeyhan
  full_name: Kartaltepe, Jeyhan
  last_name: Kartaltepe
- first_name: Nobunari
  full_name: Kashikawa, Nobunari
  last_name: Kashikawa
- first_name: Toshihiro
  full_name: Kawaguchi, Toshihiro
  last_name: Kawaguchi
- first_name: Junyao
  full_name: Li, Junyao
  last_name: Li
- first_name: Chien-Hsiu
  full_name: Lee, Chien-Hsiu
  last_name: Lee
- first_name: Alessandro
  full_name: Lupi, Alessandro
  last_name: Lupi
- first_name: Jan-Torge
  full_name: Schindler, Jan-Torge
  last_name: Schindler
- first_name: Malte
  full_name: Schramm, Malte
  last_name: Schramm
- first_name: Kazuhiro
  full_name: Shimasaku, Kazuhiro
  last_name: Shimasaku
- first_name: Marko
  full_name: Shuntov, Marko
  last_name: Shuntov
- first_name: Takumi S.
  full_name: Tanaka, Takumi S.
  last_name: Tanaka
- first_name: Yoshiki
  full_name: Toba, Yoshiki
  last_name: Toba
- first_name: Benny
  full_name: Trakhtenbrot, Benny
  last_name: Trakhtenbrot
- first_name: Hideki
  full_name: Umehata, Hideki
  last_name: Umehata
- first_name: Marianne
  full_name: Vestergaard, Marianne
  last_name: Vestergaard
- first_name: Feige
  full_name: Wang, Feige
  last_name: Wang
- first_name: Jinyi
  full_name: Yang, Jinyi
  last_name: Yang
citation:
  ama: Ding X, Onoue M, Silverman JD, et al. SHELLQs-JWST unveils the host galaxies
    of 12 quasars at z &#62; 6. <i>The Astrophysical Journal</i>. 2025;993(1). doi:<a
    href="https://doi.org/10.3847/1538-4357/ae045b">10.3847/1538-4357/ae045b</a>
  apa: Ding, X., Onoue, M., Silverman, J. D., Matsuoka, Y., Izumi, T., Strauss, M.
    A., … Yang, J. (2025). SHELLQs-JWST unveils the host galaxies of 12 quasars at
    z &#62; 6. <i>The Astrophysical Journal</i>. IOP Publishing. <a href="https://doi.org/10.3847/1538-4357/ae045b">https://doi.org/10.3847/1538-4357/ae045b</a>
  chicago: Ding, Xuheng, Masafusa Onoue, John D. Silverman, Yoshiki Matsuoka, Takuma
    Izumi, Michael A. Strauss, Lilan Yang, et al. “SHELLQs-JWST Unveils the Host Galaxies
    of 12 Quasars at z &#62; 6.” <i>The Astrophysical Journal</i>. IOP Publishing,
    2025. <a href="https://doi.org/10.3847/1538-4357/ae045b">https://doi.org/10.3847/1538-4357/ae045b</a>.
  ieee: X. Ding <i>et al.</i>, “SHELLQs-JWST unveils the host galaxies of 12 quasars
    at z &#62; 6,” <i>The Astrophysical Journal</i>, vol. 993, no. 1. IOP Publishing,
    2025.
  ista: Ding X, Onoue M, Silverman JD, Matsuoka Y, Izumi T, Strauss MA, Yang L, Jahnke
    K, Phillips CL, Treu T, Andika IT, Aoki K, Arita J, Baba S, Bosman SEI, Eilers
    A-C, Fujimoto S, Haiman Z, Imanishi M, Inayoshi K, Iwasawa K, Kartaltepe J, Kashikawa
    N, Kawaguchi T, Li J, Lee C-H, Lupi A, Schindler J-T, Schramm M, Shimasaku K,
    Shuntov M, Tanaka TS, Toba Y, Trakhtenbrot B, Umehata H, Vestergaard M, Wang F,
    Yang J. 2025. SHELLQs-JWST unveils the host galaxies of 12 quasars at z &#62;
    6. The Astrophysical Journal. 993(1), 91.
  mla: Ding, Xuheng, et al. “SHELLQs-JWST Unveils the Host Galaxies of 12 Quasars
    at z &#62; 6.” <i>The Astrophysical Journal</i>, vol. 993, no. 1, 91, IOP Publishing,
    2025, doi:<a href="https://doi.org/10.3847/1538-4357/ae045b">10.3847/1538-4357/ae045b</a>.
  short: X. Ding, M. Onoue, J.D. Silverman, Y. Matsuoka, T. Izumi, M.A. Strauss, L.
    Yang, K. Jahnke, C.L. Phillips, T. Treu, I.T. Andika, K. Aoki, J. Arita, S. Baba,
    S.E.I. Bosman, A.-C. Eilers, S. Fujimoto, Z. Haiman, M. Imanishi, K. Inayoshi,
    K. Iwasawa, J. Kartaltepe, N. Kashikawa, T. Kawaguchi, J. Li, C.-H. Lee, A. Lupi,
    J.-T. Schindler, M. Schramm, K. Shimasaku, M. Shuntov, T.S. Tanaka, Y. Toba, B.
    Trakhtenbrot, H. Umehata, M. Vestergaard, F. Wang, J. Yang, The Astrophysical
    Journal 993 (2025).
date_created: 2026-01-31T09:29:11Z
date_published: 2025-10-28T00:00:00Z
date_updated: 2026-02-10T07:44:42Z
day: '28'
ddc:
- '520'
department:
- _id: ZoHa
doi: 10.3847/1538-4357/ae045b
external_id:
  arxiv:
  - '2505.03876'
file:
- access_level: open_access
  checksum: 36decd55832a270ce62086c1a279a254
  content_type: application/pdf
  creator: dernst
  date_created: 2026-02-10T07:42:21Z
  date_updated: 2026-02-10T07:42:21Z
  file_id: '21206'
  file_name: 2025_AstrophysicalJournal_Ding.pdf
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  success: 1
file_date_updated: 2026-02-10T07:42:21Z
has_accepted_license: '1'
intvolume: '       993'
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language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
status: public
title: SHELLQs-JWST unveils the host galaxies of 12 quasars at z > 6
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 993
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '21136'
abstract:
- lang: eng
  text: The plant hormone auxin regulates growth and development through at least
    two distinct signaling pathways. The nuclear pathway, involving TIR1/AFB receptors,
    mediates transcription; whereas the cell surface ABP1-TMK1 auxin perception triggers
    global ultrafast phosphorylation response. Here, we revisit the rich history of
    the disputed ABP1 auxin receptor, highlighting recent findings of the involvement
    of TMKs and other molecular components and focusing on their role in auxin canalization-mediated
    development.
acknowledgement: We gratefully acknowledge the funding by the Austrian Science Fund
  (FWF; I 6123-B and P 37051-B) and the European Research Council (ERC; 101142681
  CYNIPS).We would like to thank Lukas Fiedler for his significant input and thoughtful
  revision of this manuscript.
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Aline
  full_name: Monzer, Aline
  id: 2DB5D88C-D7B3-11E9-B8FD-7907E6697425
  last_name: Monzer
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Monzer A, Friml J. Historical and mechanistic perspective on ABP1-TMK1-mediated
    cell surface auxin signaling. <i>npj Science of Plants</i>. 2025;1(1):2. doi:<a
    href="https://doi.org/10.1038/s44383-025-00002-8">10.1038/s44383-025-00002-8</a>
  apa: Monzer, A., &#38; Friml, J. (2025). Historical and mechanistic perspective
    on ABP1-TMK1-mediated cell surface auxin signaling. <i>Npj Science of Plants</i>.
    Springer Nature. <a href="https://doi.org/10.1038/s44383-025-00002-8">https://doi.org/10.1038/s44383-025-00002-8</a>
  chicago: Monzer, Aline, and Jiří Friml. “Historical and Mechanistic Perspective
    on ABP1-TMK1-Mediated Cell Surface Auxin Signaling.” <i>Npj Science of Plants</i>.
    Springer Nature, 2025. <a href="https://doi.org/10.1038/s44383-025-00002-8">https://doi.org/10.1038/s44383-025-00002-8</a>.
  ieee: A. Monzer and J. Friml, “Historical and mechanistic perspective on ABP1-TMK1-mediated
    cell surface auxin signaling.,” <i>npj Science of Plants</i>, vol. 1, no. 1. Springer
    Nature, p. 2, 2025.
  ista: Monzer A, Friml J. 2025. Historical and mechanistic perspective on ABP1-TMK1-mediated
    cell surface auxin signaling. npj Science of Plants. 1(1), 2.
  mla: Monzer, Aline, and Jiří Friml. “Historical and Mechanistic Perspective on ABP1-TMK1-Mediated
    Cell Surface Auxin Signaling.” <i>Npj Science of Plants</i>, vol. 1, no. 1, Springer
    Nature, 2025, p. 2, doi:<a href="https://doi.org/10.1038/s44383-025-00002-8">10.1038/s44383-025-00002-8</a>.
  short: A. Monzer, J. Friml, Npj Science of Plants 1 (2025) 2.
corr_author: '1'
date_created: 2026-02-03T13:03:53Z
date_published: 2025-07-01T00:00:00Z
date_updated: 2026-02-10T09:39:20Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
- _id: GradSch
doi: 10.1038/s44383-025-00002-8
external_id:
  pmid:
  - '40630787'
file:
- access_level: open_access
  checksum: 6c190faacf0e3bef98311dc8a12132d4
  content_type: application/pdf
  creator: dernst
  date_created: 2026-02-10T09:35:43Z
  date_updated: 2026-02-10T09:35:43Z
  file_id: '21208'
  file_name: 2025_NPJSciencePlants_Monzer.pdf
  file_size: 974106
  relation: main_file
  success: 1
file_date_updated: 2026-02-10T09:35:43Z
has_accepted_license: '1'
intvolume: '         1'
issue: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '07'
oa: 1
oa_version: Published Version
page: '2'
pmid: 1
project:
- _id: bd76d395-d553-11ed-ba76-f678c14f9033
  grant_number: I06123
  name: Peptide receptors for auxin canalization in Arabidopsis
- _id: 7bcece63-9f16-11ee-852c-ae94e099eeb6
  grant_number: P37051
  name: Guanylate cyclase activity of TIR1/AFBs auxin receptors
- _id: 8f347782-16d5-11f0-9cad-8c19706ee739
  grant_number: '101142681'
  name: Cyclic nucleotides as second messengers in plants
publication: npj Science of Plants
publication_identifier:
  eissn:
  - 3005-1401
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Historical and mechanistic perspective on ABP1-TMK1-mediated cell surface auxin
  signaling.
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1
year: '2025'
...
---
OA_place: publisher
OA_type: diamond
PlanS_conform: '1'
_id: '21143'
abstract:
- lang: eng
  text: "The Lovász Local Lemma (LLL) is a powerful tool in probabilistic\r\ncombinatorics
    which can be used to establish the existence of objects with certain\r\nproperties.
    The breakthrough paper by Moser & Tardos (STOC’09 and JACM 2010)\r\nand follow-up
    work revealed that the LLL has intimate connections with a class of\r\nstochastic
    local search algorithms for finding such desirable objects.\r\nBesides conditions
    for convergence, many other natural questions can be asked\r\nabout algorithms;
    for instance, “are they parallelizable?”, “how many solutions can\r\nthey output?”,
    “what is the expected ‘weight’ of a solution?”. These questions and\r\nmore have
    been answered for a class of LLL-inspired algorithms called commutative. In\r\nthis
    paper we introduce a new, very natural and more general notion of commutativity\r\n(essentially
    matrix commutativity) which allows us to show a number of new refined\r\nproperties
    of LLL-inspired local search algorithms with significantly simpler proofs."
acknowledgement: "This material is based on work directly supported by the IAS Fund
  for Math and indirectly supported by the National Science Foundation Grant No. CCF-1900460.
  Any opinions, findings and conclusions or recommendations expressed in this material
  are those of the author(s) and do not necessarily reflect the views of the National
  Science Foundation. This work is also supported by the National Science Foundation
  Grant No. CCF-1815328. Supported by the European Research Council under the European
  Union’s Seventh Framework Programme\r\n(FP7/2007-2013)/ERC grant agreement no 616160."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: David G.
  full_name: Harris, David G.
  last_name: Harris
- first_name: Fotios
  full_name: Iliopoulos, Fotios
  last_name: Iliopoulos
- first_name: Vladimir
  full_name: Kolmogorov, Vladimir
  id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
  last_name: Kolmogorov
citation:
  ama: Harris DG, Iliopoulos F, Kolmogorov V. A new notion of commutativity for the
    algorithmic Lovász Local Lemma. <i>Theory of Computing</i>. 2025;21(5):1-34. doi:<a
    href="https://doi.org/10.4086/toc.2025.v021a005">10.4086/toc.2025.v021a005</a>
  apa: Harris, D. G., Iliopoulos, F., &#38; Kolmogorov, V. (2025). A new notion of
    commutativity for the algorithmic Lovász Local Lemma. <i>Theory of Computing</i>.
    University of Chicago Press. <a href="https://doi.org/10.4086/toc.2025.v021a005">https://doi.org/10.4086/toc.2025.v021a005</a>
  chicago: Harris, David G., Fotios Iliopoulos, and Vladimir Kolmogorov. “A New Notion
    of Commutativity for the Algorithmic Lovász Local Lemma.” <i>Theory of Computing</i>.
    University of Chicago Press, 2025. <a href="https://doi.org/10.4086/toc.2025.v021a005">https://doi.org/10.4086/toc.2025.v021a005</a>.
  ieee: D. G. Harris, F. Iliopoulos, and V. Kolmogorov, “A new notion of commutativity
    for the algorithmic Lovász Local Lemma,” <i>Theory of Computing</i>, vol. 21,
    no. 5. University of Chicago Press, pp. 1–34, 2025.
  ista: Harris DG, Iliopoulos F, Kolmogorov V. 2025. A new notion of commutativity
    for the algorithmic Lovász Local Lemma. Theory of Computing. 21(5), 1–34.
  mla: Harris, David G., et al. “A New Notion of Commutativity for the Algorithmic
    Lovász Local Lemma.” <i>Theory of Computing</i>, vol. 21, no. 5, University of
    Chicago Press, 2025, pp. 1–34, doi:<a href="https://doi.org/10.4086/toc.2025.v021a005">10.4086/toc.2025.v021a005</a>.
  short: D.G. Harris, F. Iliopoulos, V. Kolmogorov, Theory of Computing 21 (2025)
    1–34.
corr_author: '1'
date_created: 2026-02-05T12:04:58Z
date_published: 2025-09-08T00:00:00Z
date_updated: 2026-02-10T10:00:00Z
day: '08'
ddc:
- '510'
department:
- _id: VlKo
doi: 10.4086/toc.2025.v021a005
ec_funded: 1
external_id:
  arxiv:
  - '2008.05569'
file:
- access_level: open_access
  checksum: 5a9f7cfccac6046fe75a14a4059eed04
  content_type: application/pdf
  creator: dernst
  date_created: 2026-02-10T09:54:28Z
  date_updated: 2026-02-10T09:54:28Z
  file_id: '21209'
  file_name: 2025_TheoryComputing_Harris.pdf
  file_size: 509346
  relation: main_file
  success: 1
file_date_updated: 2026-02-10T09:54:28Z
has_accepted_license: '1'
intvolume: '        21'
issue: '5'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 1 - 34
project:
- _id: 25FBA906-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '616160'
  name: 'Discrete Optimization in Computer Vision: Theory and Practice'
publication: Theory of Computing
publication_identifier:
  eissn:
  - 1557-2862
publication_status: published
publisher: University of Chicago Press
quality_controlled: '1'
related_material:
  record:
  - id: '10072'
    relation: earlier_version
    status: public
status: public
title: A new notion of commutativity for the algorithmic Lovász Local Lemma
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 21
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '21144'
abstract:
- lang: eng
  text: 'This paper deals with the algorithmic aspects of solving feasibility problems
    of semidefinite programming (SDP), aka linear matrix inequalities (LMIs). Since
    in some SDP instances all feasible solutions have irrational entries, numerical
    solvers that work with rational numbers can only find an approximate solution.
    We study the following question: Is it possible to certify feasibility of a given
    SDP using an approximate solution that is sufficiently close to some exact solution?
    Existing approaches make the assumption that there exist rational feasible solutions
    (and use techniques such as rounding and lattice reduction algorithms). We propose
    an alternative approach that does not need this assumption. More specifically,
    we show how to construct a system of polynomial equations whose set of real solutions
    is guaranteed to have an isolated correct solution (assuming that the target exact
    solution is maximum-rank). This allows, in particular, for us to use algorithms
    from real algebraic geometry for solving systems of polynomial equations, yielding
    a hybrid (or symbolic-numerical) method for SDPs. We experimentally compare it
    with a pure symbolic method in [D. Henrion, S. Naldi, and M. Safey El Din, SIAM
    J. Optim., 26 (2016), pp. 2512–2539]; the hybrid method was able to certify feasibility
    of many SDP instances on which the aforementioned paper failed. Our approach may
    have further applications, such as refining an approximate solution using methods
    of numerical algebraic geometry for systems of polynomial equations.'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Vladimir
  full_name: Kolmogorov, Vladimir
  id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
  last_name: Kolmogorov
- first_name: Simone
  full_name: Naldi, Simone
  last_name: Naldi
- first_name: Jeferson
  full_name: Zapata, Jeferson
  id: 00223538-AF8F-11E9-A4C7-F729E6697425
  last_name: Zapata
citation:
  ama: Kolmogorov V, Naldi S, Zapata J. Certifying solutions of degenerate semidefinite
    programs. <i>SIAM Journal on Optimization</i>. 2025;35(3):1630-1654. doi:<a href="https://doi.org/10.1137/24m1664691">10.1137/24m1664691</a>
  apa: Kolmogorov, V., Naldi, S., &#38; Zapata, J. (2025). Certifying solutions of
    degenerate semidefinite programs. <i>SIAM Journal on Optimization</i>. Society
    for Industrial and Applied Mathematics. <a href="https://doi.org/10.1137/24m1664691">https://doi.org/10.1137/24m1664691</a>
  chicago: Kolmogorov, Vladimir, Simone Naldi, and Jeferson Zapata. “Certifying Solutions
    of Degenerate Semidefinite Programs.” <i>SIAM Journal on Optimization</i>. Society
    for Industrial and Applied Mathematics, 2025. <a href="https://doi.org/10.1137/24m1664691">https://doi.org/10.1137/24m1664691</a>.
  ieee: V. Kolmogorov, S. Naldi, and J. Zapata, “Certifying solutions of degenerate
    semidefinite programs,” <i>SIAM Journal on Optimization</i>, vol. 35, no. 3. Society
    for Industrial and Applied Mathematics, pp. 1630–1654, 2025.
  ista: Kolmogorov V, Naldi S, Zapata J. 2025. Certifying solutions of degenerate
    semidefinite programs. SIAM Journal on Optimization. 35(3), 1630–1654.
  mla: Kolmogorov, Vladimir, et al. “Certifying Solutions of Degenerate Semidefinite
    Programs.” <i>SIAM Journal on Optimization</i>, vol. 35, no. 3, Society for Industrial
    and Applied Mathematics, 2025, pp. 1630–54, doi:<a href="https://doi.org/10.1137/24m1664691">10.1137/24m1664691</a>.
  short: V. Kolmogorov, S. Naldi, J. Zapata, SIAM Journal on Optimization 35 (2025)
    1630–1654.
date_created: 2026-02-05T13:33:05Z
date_published: 2025-09-01T00:00:00Z
date_updated: 2026-02-16T11:52:23Z
day: '01'
department:
- _id: VlKo
- _id: GradSch
doi: 10.1137/24m1664691
external_id:
  arxiv:
  - '2405.13625'
intvolume: '        35'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2405.13625
month: '09'
oa: 1
oa_version: Preprint
page: 1630-1654
publication: SIAM Journal on Optimization
publication_identifier:
  eissn:
  - 1095-7189
  issn:
  - 1052-6234
publication_status: published
publisher: Society for Industrial and Applied Mathematics
quality_controlled: '1'
status: public
title: Certifying solutions of degenerate semidefinite programs
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 35
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '21211'
abstract:
- lang: eng
  text: "We show that, for any graph F and η > 0, there exists a d0 = d0(F, η) such
    that every nvertex d-regular graph with d ≥ d0 has a collection of vertex-disjoint
    F-subdivisions covering\r\nat least (1 − η)n vertices. This verifies a conjecture
    of Verstraëte from 2002 and improves a\r\nrecent result of Letzter, Methuku and
    Sudakov which additionally required d to be at least\r\npolylogarithmic in n.\r\n"
acknowledgement: Supported by the European Research Council (ERC) under the European
  Union Horizon 2020 research and innovation programme (grant agreement No. 947978).
  This project has received funding from the European Union’s Horizon 2020 research
  and innovation programme under the Marie Skłodowska-Curie grant agreement No 101034413.
article_number: '2508.00480'
article_processing_charge: No
arxiv: 1
author:
- first_name: Richard
  full_name: Montgomery, Richard
  last_name: Montgomery
- first_name: Kalina H
  full_name: Petrova, Kalina H
  id: 554ff4e4-f325-11ee-b0c4-a10dbd523381
  last_name: Petrova
- first_name: Arjun
  full_name: Ranganathan, Arjun
  last_name: Ranganathan
- first_name: Jane
  full_name: Tan, Jane
  last_name: Tan
citation:
  ama: Montgomery R, Petrova KH, Ranganathan A, Tan J. Packing subdivisions into regular
    graphs. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.2508.00480">10.48550/arXiv.2508.00480</a>
  apa: Montgomery, R., Petrova, K. H., Ranganathan, A., &#38; Tan, J. (n.d.). Packing
    subdivisions into regular graphs. <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.2508.00480">https://doi.org/10.48550/arXiv.2508.00480</a>
  chicago: Montgomery, Richard, Kalina H Petrova, Arjun Ranganathan, and Jane Tan.
    “Packing Subdivisions into Regular Graphs.” <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/arXiv.2508.00480">https://doi.org/10.48550/arXiv.2508.00480</a>.
  ieee: R. Montgomery, K. H. Petrova, A. Ranganathan, and J. Tan, “Packing subdivisions
    into regular graphs,” <i>arXiv</i>. .
  ista: Montgomery R, Petrova KH, Ranganathan A, Tan J. Packing subdivisions into
    regular graphs. arXiv, 2508.00480.
  mla: Montgomery, Richard, et al. “Packing Subdivisions into Regular Graphs.” <i>ArXiv</i>,
    2508.00480, doi:<a href="https://doi.org/10.48550/arXiv.2508.00480">10.48550/arXiv.2508.00480</a>.
  short: R. Montgomery, K.H. Petrova, A. Ranganathan, J. Tan, ArXiv (n.d.).
date_created: 2026-02-10T11:32:41Z
date_published: 2025-08-01T00:00:00Z
date_updated: 2026-02-10T11:39:16Z
day: '01'
department:
- _id: MaKw
doi: 10.48550/arXiv.2508.00480
ec_funded: 1
external_id:
  arxiv:
  - '2508.00480'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2508.00480
month: '08'
oa: 1
oa_version: Preprint
project:
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
publication: arXiv
publication_status: submitted
status: public
title: Packing subdivisions into regular graphs
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21235'
abstract:
- lang: eng
  text: The condensation of charged polymers is an important driver for the formation
    of biomolecular condensates. Recent experiments suggest that this mechanism also
    controls the clustering of eukaryotic chromosomes during the late stages of cell
    division. In this process, interchromosome attraction is driven by the condensation
    of cytoplasmic RNA and Ki-67, a charged intrinsically disordered protein that
    coats the chromosomes as a brush. Attraction between chromosomes has been shown
    to be specifically promoted by a localized charged patch on Ki-67, although the
    physical mechanism remains unclear. To elucidate this process, we combine coarse-grained
    simulations and analytical theory to study the RNA-mediated interaction between
    charged polymer brushes on the chromosome surfaces. We show that the charged patch
    on Ki-67 leads to interchromosome attraction via RNA bridging between the two
    brushes, whereby the RNA preferentially interacts with the charged patches, leading
    to stable, long-range forces. By contrast, if the brush is uniformly charged,
    bridging is basically absent due to complete adsorption of RNA onto the brush.
    Moreover, the RNA dynamics becomes caged in presence of the charged patch while
    remaining diffusive with uniform charge. Our work sheds light on the physical
    origin of chromosome clustering, while also suggesting a general mechanism for
    cells to tune work production by biomolecular condensates via different charge
    distributions.
acknowledgement: "This work was supported by the European Union’s Horizon 2020 research
  and innovation programme (A.Š. and V.S., ERC grant Agreement No. 802960 to A.Š.,
  I.P. and P.R.,\r\nMarie Skłodowska-Curie Grant Agreement No. 101034413), the German
  Research Foundation (S.C-H. and A.H.-A., DFG Project No. 402723784 to S.C-H.), the
  Vallee Scholarship\r\n(A.Š. and V.S.), the EMBO Young Investigator Programme (A.Š.),
  and a Ph.D. fellowship from the Boehringer Ingelheim Fonds (A.H.-A.)."
article_number: '033010'
article_processing_charge: Yes
article_type: original
author:
- first_name: Valerio
  full_name: Sorichetti, Valerio
  id: ef8a92cb-c7b6-11ec-8bea-e1fd5847bc5b
  last_name: Sorichetti
  orcid: 0000-0002-9645-6576
- first_name: Paul
  full_name: Robin, Paul
  id: 48c58128-57b0-11ee-9095-dc28fd97fc1d
  last_name: Robin
  orcid: 0000-0002-5728-9189
- first_name: Ivan
  full_name: Palaia, Ivan
  id: 9c805cd2-4b75-11ec-a374-db6dd0ed57fa
  last_name: Palaia
  orcid: ' 0000-0002-8843-9485 '
- first_name: Alberto
  full_name: Hernandez-Armendariz, Alberto
  last_name: Hernandez-Armendariz
- first_name: Sara
  full_name: Cuylen-Haering, Sara
  last_name: Cuylen-Haering
- first_name: Anđela
  full_name: Šarić, Anđela
  id: bf63d406-f056-11eb-b41d-f263a6566d8b
  last_name: Šarić
  orcid: 0000-0002-7854-2139
citation:
  ama: Sorichetti V, Robin P, Palaia I, Hernandez-Armendariz A, Cuylen-Haering S,
    Šarić A. Charge distribution of the coating brush drives interchromosome attraction.
    <i>PRX Life</i>. 2025;3(3). doi:<a href="https://doi.org/10.1103/41fd-r847">10.1103/41fd-r847</a>
  apa: Sorichetti, V., Robin, P., Palaia, I., Hernandez-Armendariz, A., Cuylen-Haering,
    S., &#38; Šarić, A. (2025). Charge distribution of the coating brush drives interchromosome
    attraction. <i>PRX Life</i>. American Physical Society. <a href="https://doi.org/10.1103/41fd-r847">https://doi.org/10.1103/41fd-r847</a>
  chicago: Sorichetti, Valerio, Paul Robin, Ivan Palaia, Alberto Hernandez-Armendariz,
    Sara Cuylen-Haering, and Anđela Šarić. “Charge Distribution of the Coating Brush
    Drives Interchromosome Attraction.” <i>PRX Life</i>. American Physical Society,
    2025. <a href="https://doi.org/10.1103/41fd-r847">https://doi.org/10.1103/41fd-r847</a>.
  ieee: V. Sorichetti, P. Robin, I. Palaia, A. Hernandez-Armendariz, S. Cuylen-Haering,
    and A. Šarić, “Charge distribution of the coating brush drives interchromosome
    attraction,” <i>PRX Life</i>, vol. 3, no. 3. American Physical Society, 2025.
  ista: Sorichetti V, Robin P, Palaia I, Hernandez-Armendariz A, Cuylen-Haering S,
    Šarić A. 2025. Charge distribution of the coating brush drives interchromosome
    attraction. PRX Life. 3(3), 033010.
  mla: Sorichetti, Valerio, et al. “Charge Distribution of the Coating Brush Drives
    Interchromosome Attraction.” <i>PRX Life</i>, vol. 3, no. 3, 033010, American
    Physical Society, 2025, doi:<a href="https://doi.org/10.1103/41fd-r847">10.1103/41fd-r847</a>.
  short: V. Sorichetti, P. Robin, I. Palaia, A. Hernandez-Armendariz, S. Cuylen-Haering,
    A. Šarić, PRX Life 3 (2025).
corr_author: '1'
date_created: 2026-02-16T14:50:32Z
date_published: 2025-08-11T00:00:00Z
date_updated: 2026-02-17T11:16:26Z
day: '11'
ddc:
- '570'
department:
- _id: AnSa
- _id: EdHa
doi: 10.1103/41fd-r847
ec_funded: 1
file:
- access_level: open_access
  checksum: 1702b9bdbfd902a7c08aa4f1479b390d
  content_type: application/pdf
  creator: dernst
  date_created: 2026-02-17T11:12:30Z
  date_updated: 2026-02-17T11:12:30Z
  file_id: '21287'
  file_name: 2025_PRXLife_Sorichetti.pdf
  file_size: 3732843
  relation: main_file
  success: 1
file_date_updated: 2026-02-17T11:12:30Z
has_accepted_license: '1'
intvolume: '         3'
issue: '3'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: eba2549b-77a9-11ec-83b8-a81e493eae4e
  call_identifier: H2020
  grant_number: '802960'
  name: 'Non-Equilibrium Protein Assembly: from Building Blocks to Biological Machines'
- _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c
  call_identifier: H2020
  grant_number: '101034413'
  name: 'IST-BRIDGE: International postdoctoral program'
- _id: 349b6ff1-11ca-11ed-8bc3-f006047c2eeb
  name: EMBO Young Investigator Program - Andela Saric
publication: PRX Life
publication_identifier:
  eissn:
  - 2835-8279
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
status: public
title: Charge distribution of the coating brush drives interchromosome attraction
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21236'
abstract:
- lang: eng
  text: 'The migration behavior of colliding cells is critically determined by transient
    contact interactions. During these interactions, the motility machinery, including
    the front-rear polarization of the cell, dynamically responds to surface protein-mediated
    transmission of forces and biochemical signals between cells. While biomolecular
    details of such contact interactions are increasingly well understood, it remains
    unclear what biophysical interaction mechanisms govern the cell-level dynamics
    of colliding cells and how these mechanisms vary across cell types. Here we develop
    a phenomenological theory based on 14 candidate contact-interaction mechanisms
    coupling cell position, protrusion, and polarity. Using high-throughput micropattern
    experiments, we detect which of these phenomenological contact interactions captures
    the interaction behaviors of cells. We find that various cell types—ranging from
    mesenchymal to epithelial cells—are accurately captured by a single model with
    only two interaction mechanisms: polarity-protrusion coupling and polarity-polarity
    coupling. Remarkably, the qualitatively different interaction behaviors of distinct
    cells, as well as cells subject to molecular perturbations of surface protein-mediated
    signaling, can all be quantitatively captured by varying the strength and sign
    of the polarity-polarity coupling mechanism. Altogether, our data-driven phenomenological
    theory of cell-cell interactions reveals polarity-polarity coupling as a versatile
    and general contact-interaction mechanism, which may underlie diverse collective
    migration behaviors of motile cells.'
acknowledgement: We thank Johannes Flommersfeld, Bram Hoogland, and Ricard Alert for
  helpful discussions. We thank Gerlinde Schwake for producing the E-cadherin mRNA.
  This work was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research
  Foundation), Project-ID 201269156 - SFB 1032 (Project B01 and B12).
article_number: '033015'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Tom
  full_name: Brandstätter, Tom
  last_name: Brandstätter
- first_name: Emily
  full_name: Brieger, Emily
  last_name: Brieger
- first_name: David
  full_name: Brückner, David
  id: e1e86031-6537-11eb-953a-f7ab92be508d
  last_name: Brückner
  orcid: 0000-0001-7205-2975
- first_name: Georg
  full_name: Ladurner, Georg
  last_name: Ladurner
- first_name: Joachim O.
  full_name: Rädler, Joachim O.
  last_name: Rädler
- first_name: Chase P.
  full_name: Broedersz, Chase P.
  last_name: Broedersz
citation:
  ama: Brandstätter T, Brieger E, Brückner D, Ladurner G, Rädler JO, Broedersz CP.
    Data-driven theory reveals protrusion and polarity interactions governing collision
    behavior of distinct motile cells. <i>PRX Life</i>. 2025;3(3). doi:<a href="https://doi.org/10.1103/3hhj-rt1n">10.1103/3hhj-rt1n</a>
  apa: Brandstätter, T., Brieger, E., Brückner, D., Ladurner, G., Rädler, J. O., &#38;
    Broedersz, C. P. (2025). Data-driven theory reveals protrusion and polarity interactions
    governing collision behavior of distinct motile cells. <i>PRX Life</i>. American
    Physical Society. <a href="https://doi.org/10.1103/3hhj-rt1n">https://doi.org/10.1103/3hhj-rt1n</a>
  chicago: Brandstätter, Tom, Emily Brieger, David Brückner, Georg Ladurner, Joachim
    O. Rädler, and Chase P. Broedersz. “Data-Driven Theory Reveals Protrusion and
    Polarity Interactions Governing Collision Behavior of Distinct Motile Cells.”
    <i>PRX Life</i>. American Physical Society, 2025. <a href="https://doi.org/10.1103/3hhj-rt1n">https://doi.org/10.1103/3hhj-rt1n</a>.
  ieee: T. Brandstätter, E. Brieger, D. Brückner, G. Ladurner, J. O. Rädler, and C.
    P. Broedersz, “Data-driven theory reveals protrusion and polarity interactions
    governing collision behavior of distinct motile cells,” <i>PRX Life</i>, vol.
    3, no. 3. American Physical Society, 2025.
  ista: Brandstätter T, Brieger E, Brückner D, Ladurner G, Rädler JO, Broedersz CP.
    2025. Data-driven theory reveals protrusion and polarity interactions governing
    collision behavior of distinct motile cells. PRX Life. 3(3), 033015.
  mla: Brandstätter, Tom, et al. “Data-Driven Theory Reveals Protrusion and Polarity
    Interactions Governing Collision Behavior of Distinct Motile Cells.” <i>PRX Life</i>,
    vol. 3, no. 3, 033015, American Physical Society, 2025, doi:<a href="https://doi.org/10.1103/3hhj-rt1n">10.1103/3hhj-rt1n</a>.
  short: T. Brandstätter, E. Brieger, D. Brückner, G. Ladurner, J.O. Rädler, C.P.
    Broedersz, PRX Life 3 (2025).
date_created: 2026-02-16T14:52:02Z
date_published: 2025-08-26T00:00:00Z
date_updated: 2026-02-17T11:20:20Z
day: '26'
ddc:
- '570'
department:
- _id: EdHa
doi: 10.1103/3hhj-rt1n
external_id:
  arxiv:
  - '2407.17268'
file:
- access_level: open_access
  checksum: 70c067ceef3a8262d9c430e85e3ba9ec
  content_type: application/pdf
  creator: dernst
  date_created: 2026-02-17T11:18:18Z
  date_updated: 2026-02-17T11:18:18Z
  file_id: '21288'
  file_name: 2025_PRXLife_Brandstaetter.pdf
  file_size: 9366716
  relation: main_file
  success: 1
file_date_updated: 2026-02-17T11:18:18Z
has_accepted_license: '1'
intvolume: '         3'
issue: '3'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
publication: PRX Life
publication_identifier:
  eissn:
  - 2835-8279
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
status: public
title: Data-driven theory reveals protrusion and polarity interactions governing collision
  behavior of distinct motile cells
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 3
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '21237'
abstract:
- lang: eng
  text: Intelligent soft matter lies at the intersection of materials science, physics,
    and cognitive science, promising to change how we design and interact with materials.
    This transformative field aims to create materials with life-like capabilities,
    such as perception, learning, memory, and adaptive behavior. Unlike traditional
    materials, which typically perform static or predefined functions, intelligent
    soft matter can dynamically interact with its environment, integrating multiple
    sensory inputs, retaining past experiences, and making decisions to optimize its
    responses. Inspired by biological systems, these materials leverage the inherent
    properties of soft matter such as flexibility, adaptability, and responsiveness
    to perform functions that mimic cognitive processes. By synthesizing current research
    trends and projecting their evolution, we present a forward-looking perspective
    on how intelligent soft matter could be constructed, with the aim of inspiring
    innovations in areas such as biomedical devices, adaptive robotics, and beyond.
    We highlight new pathways for integrating sensing, memory and actuation with low-power
    internal operations, and we discuss key challenges in realizing materials that
    exhibit truly “intelligent behavior”. These approaches outline a path toward more
    robust, versatile, and scalable materials that can potentially act, compute, and
    “think” through their inherent intrinsic material properties—moving beyond traditional
    smart technologies that rely on external control.
acknowledgement: 'The work is the result of the SoftComp Topical workshop on Intelligent
  Soft Matter, Salou 2025 (https://softmat.net/intelligent-soft-matter/) financed
  by SoftComp Network of Excellence (https://eu-softcomp.net/). Various AI tools were
  used for preparation of the manuscript: language models Google Gemini 2.0 series
  and Discovery Engine (https://explore-the-unknown.vercel.app) for literature processing,
  structuring contributions, finding concept overlaps and summarizing according to
  procedure explained in https://github.com/vbaulin/IntelliDE/.'
article_processing_charge: No
article_type: review
author:
- first_name: Vladimir A.
  full_name: Baulin, Vladimir A.
  last_name: Baulin
- first_name: Achille
  full_name: Giacometti, Achille
  last_name: Giacometti
- first_name: Dmitry A.
  full_name: Fedosov, Dmitry A.
  last_name: Fedosov
- first_name: Stephen
  full_name: Ebbens, Stephen
  last_name: Ebbens
- first_name: Nydia R.
  full_name: Varela-Rosales, Nydia R.
  last_name: Varela-Rosales
- first_name: Neus
  full_name: Feliu, Neus
  last_name: Feliu
- first_name: Mithun
  full_name: Chowdhury, Mithun
  last_name: Chowdhury
- first_name: Minghan
  full_name: Hu, Minghan
  last_name: Hu
- first_name: Rudolf
  full_name: Füchslin, Rudolf
  last_name: Füchslin
- first_name: Marjolein
  full_name: Dijkstra, Marjolein
  last_name: Dijkstra
- first_name: Matan
  full_name: Mussel, Matan
  last_name: Mussel
- first_name: René
  full_name: van Roij, René
  last_name: van Roij
- first_name: Dong
  full_name: Xie, Dong
  last_name: Xie
- first_name: Vassil
  full_name: Tzanov, Vassil
  last_name: Tzanov
- first_name: Mengjie
  full_name: Zu, Mengjie
  id: 26dd9e7c-e86a-11eb-a854-82ac731c9ae2
  last_name: Zu
- first_name: Samuel
  full_name: Hidalgo-Caballero, Samuel
  last_name: Hidalgo-Caballero
- first_name: Ye
  full_name: Yuan, Ye
  last_name: Yuan
- first_name: Luca
  full_name: Cocconi, Luca
  last_name: Cocconi
- first_name: Cheol-Min
  full_name: Ghim, Cheol-Min
  last_name: Ghim
- first_name: Cécile
  full_name: Cottin-Bizonne, Cécile
  last_name: Cottin-Bizonne
- first_name: M. Carmen
  full_name: Miguel, M. Carmen
  last_name: Miguel
- first_name: Maria Jose
  full_name: Esplandiu, Maria Jose
  last_name: Esplandiu
- first_name: Juliane
  full_name: Simmchen, Juliane
  last_name: Simmchen
- first_name: Wolfgang J.
  full_name: Parak, Wolfgang J.
  last_name: Parak
- first_name: Marco
  full_name: Werner, Marco
  last_name: Werner
- first_name: Gerhard
  full_name: Gompper, Gerhard
  last_name: Gompper
- first_name: Martin M.
  full_name: Hanczyc, Martin M.
  last_name: Hanczyc
citation:
  ama: 'Baulin VA, Giacometti A, Fedosov DA, et al. Intelligent soft matter: Towards
    embodied intelligence. <i>Soft Matter</i>. 2025;(21):4129-4145. doi:<a href="https://doi.org/10.1039/d5sm00174a">10.1039/d5sm00174a</a>'
  apa: 'Baulin, V. A., Giacometti, A., Fedosov, D. A., Ebbens, S., Varela-Rosales,
    N. R., Feliu, N., … Hanczyc, M. M. (2025). Intelligent soft matter: Towards embodied
    intelligence. <i>Soft Matter</i>. Royal Society of Chemistry. <a href="https://doi.org/10.1039/d5sm00174a">https://doi.org/10.1039/d5sm00174a</a>'
  chicago: 'Baulin, Vladimir A., Achille Giacometti, Dmitry A. Fedosov, Stephen Ebbens,
    Nydia R. Varela-Rosales, Neus Feliu, Mithun Chowdhury, et al. “Intelligent Soft
    Matter: Towards Embodied Intelligence.” <i>Soft Matter</i>. Royal Society of Chemistry,
    2025. <a href="https://doi.org/10.1039/d5sm00174a">https://doi.org/10.1039/d5sm00174a</a>.'
  ieee: 'V. A. Baulin <i>et al.</i>, “Intelligent soft matter: Towards embodied intelligence,”
    <i>Soft Matter</i>, no. 21. Royal Society of Chemistry, pp. 4129–4145, 2025.'
  ista: 'Baulin VA, Giacometti A, Fedosov DA, Ebbens S, Varela-Rosales NR, Feliu N,
    Chowdhury M, Hu M, Füchslin R, Dijkstra M, Mussel M, van Roij R, Xie D, Tzanov
    V, Zu M, Hidalgo-Caballero S, Yuan Y, Cocconi L, Ghim C-M, Cottin-Bizonne C, Miguel
    MC, Esplandiu MJ, Simmchen J, Parak WJ, Werner M, Gompper G, Hanczyc MM. 2025.
    Intelligent soft matter: Towards embodied intelligence. Soft Matter. (21), 4129–4145.'
  mla: 'Baulin, Vladimir A., et al. “Intelligent Soft Matter: Towards Embodied Intelligence.”
    <i>Soft Matter</i>, no. 21, Royal Society of Chemistry, 2025, pp. 4129–45, doi:<a
    href="https://doi.org/10.1039/d5sm00174a">10.1039/d5sm00174a</a>.'
  short: V.A. Baulin, A. Giacometti, D.A. Fedosov, S. Ebbens, N.R. Varela-Rosales,
    N. Feliu, M. Chowdhury, M. Hu, R. Füchslin, M. Dijkstra, M. Mussel, R. van Roij,
    D. Xie, V. Tzanov, M. Zu, S. Hidalgo-Caballero, Y. Yuan, L. Cocconi, C.-M. Ghim,
    C. Cottin-Bizonne, M.C. Miguel, M.J. Esplandiu, J. Simmchen, W.J. Parak, M. Werner,
    G. Gompper, M.M. Hanczyc, Soft Matter (2025) 4129–4145.
date_created: 2026-02-16T15:03:08Z
date_published: 2025-06-07T00:00:00Z
date_updated: 2026-02-17T11:27:48Z
day: '07'
department:
- _id: CaGo
doi: 10.1039/d5sm00174a
external_id:
  pmid:
  - '40358970'
issue: '21'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://eprints.whiterose.ac.uk/id/eprint/226553/4/Perspective_v6_clean.pdf
month: '06'
oa: 1
oa_version: Submitted Version
page: 4129-4145
pmid: 1
publication: Soft Matter
publication_identifier:
  eissn:
  - 1744-6848
  issn:
  - 1744-683X
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
status: public
title: 'Intelligent soft matter: Towards embodied intelligence'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '21241'
abstract:
- lang: eng
  text: White dwarfs (WDs) showing transits from orbiting planetary debris provide
    significant insights into the structure and dynamics of debris disks, which are
    eventually accreted to produce metal pollution. This is a rare class of objects
    with only eight published systems. In this work, we perform a systematic search
    for such systems within 500 pc in the Gaia-eDR3 catalog of WDs using the light
    curves from the Zwicky Transient Facility (ZTF) and present six new candidates.
    Our selection process targets the top 1% most photometrically variable sources
    identified using a combined variability metric from ZTF and Gaia eDR3 photometry,
    boosted by a metric space we define using von Neumann statistics and Pearson-Skew
    as a novel discovery tool to identify these systems. This is followed by optical
    spectroscopic observations of visually selected variables to confirm metal pollution.
    Four of the six systems show long-timescale photometric variability spanning several
    months to years, resulting either from long-term evolution of transit activity
    or dust and debris clouds at wide orbits. Among them, WD J1013–0427 shows an indication
    of reddening during the long-duration dip. Interpreting this as dust extinction
    makes it the first system to indicate an abundance of dust grains with radius
    ≲0.3 μm in the occulting material. The same object also shows metal emission lines
    that map an optically thick eccentric gas disk orbiting within the star’s Roche
    limit. For each candidate, we infer the abundances of the photospheric metals
    and estimate accretion rates. We show that transiting debris systems tend to have
    higher inferred accretion rates compared to the general population of metal-polluted
    WDs. Growing the number of these systems will further illuminate such comparative
    properties in the near future. Separately, we also serendipitously discovered
    an AM Canis Venaticorum showing a very long-duration outburst—only the fourth
    such system to be known.
acknowledgement: "This work is based on observations obtained with the Samuel Oschin
  Telescope 48 inch and the 60 inch Telescope at the Palomar Observatory as part of
  the Zwicky Transient Facility project. Z.T.F. is supported by the National Science
  Foundation under grants No. AST-1440341 and AST-2034437 and a collaboration including
  current partners Caltech, IPAC, the Oskar Klein Center at Stockholm University,
  the University of Maryland, University of California, Berkeley, the University of
  Wisconsin at Milwaukee, University of Warwick, Ruhr University Bochum, Cornell University,
  Northwestern University, and Drexel University. Operations are conducted by COO,
  IPAC, and UW.\r\n\r\nThis work has made use of data from the European Space Agency
  (ESA) mission Gaia (https://www.cosmos.esa.int/gaia), processed by the Gaia Data
  Processing and Analysis Consortium (DPAC; https://www.cosmos.esa.int/web/gaia/dpac/consortium).
  Funding for the DPAC has been provided by national institutions, in particular,
  the institutions participating in the Gaia Multilateral Agreement. This publication
  makes use of data products from the Wide-field Infrared Survey Explorer, which is
  a joint project of the University of California, Los Angeles, and the Jet Propulsion
  Laboratory/California Institute of Technology, funded by the National Aeronautics
  and Space Administration.\r\n\r\nThis research has made use of the VizieR catalog
  access tool, CDS, Strasbourg, France https://vizier.cds.unistra.fr/. The original
  description of the VizieR service was published in Ochsenbein et al. (2000).\r\n\r\nWe
  are grateful to the staffs of Palomar and Keck Observatory for assistance with the
  observations and data management.\r\n\r\nThe authors thank the anonymous referee
  for very extensive and useful comments which improved the presentation of the paper
  significantly. S.B. acknowledges the support from the Kishore Vaigyanik Protsahan
  Yojana (KVPY) scheme of the Department of Science and Technology, Government of
  India (a former fellowship program for undergraduate studies in basic science) during
  his undergraduate studies at IISc. S.B. thanks the Summer Undergraduate Research
  Fellowship (SURF) at Caltech and Shrinivas R. Kulkarni for hosting him as a summer
  research student in 2022. S.B. acknowledges the financial support from the Wallace
  L. W. Sargent Graduate Fellowship during the first year of his graduate studies
  at Caltech. P.E.T. received funding from the European Research Council under the
  European Union’s Horizon 2020 research and innovation program number 101002408.
  S.X. is supported by NOIRLab, which is managed by the Association of Universities
  for Research in Astronomy (AURA) under a cooperative agreement with the National
  Science Foundation. J.A.G. is supported by the National Science Foundation Graduate
  Research Fellowship Program under grant No. 2234657. This material is based upon
  work supported by the National Aeronautics and Space Administration under grant
  No. 80NSSC23K1068 issued through the Science Mission Directorate.\r\n\r\nWe have
  used Python packages Numpy (Harris et al. 2020), SciPy (Virtanen et al. 2020), Matplotlib
  (Hunter 2007), Pandas (The pandas development team 2020), Astropy (Astropy Collaboration
  et al. 2013, 2018), and Astroquery (Ginsburg et al. 2019) at various stages of this
  research."
article_number: '074202'
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: 'Soumyadeep '
  full_name: 'Bhattacharjee, Soumyadeep '
  last_name: Bhattacharjee
- first_name: Zachary P.
  full_name: Vanderbosch, Zachary P.
  last_name: Vanderbosch
- first_name: Mark A.
  full_name: Hollands, Mark A.
  last_name: Hollands
- first_name: Pier-Emmanuel
  full_name: Tremblay, Pier-Emmanuel
  last_name: Tremblay
- first_name: Siyi
  full_name: Xu, Siyi
  last_name: Xu
- first_name: Joseph A.
  full_name: Guidry, Joseph A.
  last_name: Guidry
- first_name: J.J.
  full_name: Hermes, J.J.
  last_name: Hermes
- first_name: Ilaria
  full_name: Caiazzo, Ilaria
  id: 8ae5b6e7-2a03-11ee-914d-b58ed7a3b47d
  last_name: Caiazzo
  orcid: 0000-0002-4770-5388
- first_name: Antonio C.
  full_name: Rodriguez, Antonio C.
  last_name: Rodriguez
- first_name: Jan
  full_name: van Roestel, Jan
  last_name: van Roestel
- first_name: 'Kareem '
  full_name: 'El-Badry, Kareem '
  last_name: El-Badry
- first_name: Andrew J.
  full_name: Drake, Andrew J.
  last_name: Drake
- first_name: Benjamin R.
  full_name: Roulston, Benjamin R.
  last_name: Roulston
- first_name: Reed
  full_name: Riddle, Reed
  last_name: Riddle
- first_name: Ben
  full_name: Rusholme, Ben
  last_name: Rusholme
- first_name: Steven L.
  full_name: Groom, Steven L.
  last_name: Groom
- first_name: Roger
  full_name: Smith, Roger
  last_name: Smith
- first_name: Odette
  full_name: Toloza, Odette
  last_name: Toloza
citation:
  ama: 'Bhattacharjee S, Vanderbosch ZP, Hollands MA, et al. A ZTF search for circumstellar
    debris transits in White Dwarfs: Six new candidates, one with gas disk emission,
    identified in a novel metric space. <i>Publications of the Astronomical Society
    of the Pacific</i>. 2025;137(7). doi:<a href="https://doi.org/10.1088/1538-3873/ade0ea">10.1088/1538-3873/ade0ea</a>'
  apa: 'Bhattacharjee, S., Vanderbosch, Z. P., Hollands, M. A., Tremblay, P.-E., Xu,
    S., Guidry, J. A., … Toloza, O. (2025). A ZTF search for circumstellar debris
    transits in White Dwarfs: Six new candidates, one with gas disk emission, identified
    in a novel metric space. <i>Publications of the Astronomical Society of the Pacific</i>.
    IOP Publishing. <a href="https://doi.org/10.1088/1538-3873/ade0ea">https://doi.org/10.1088/1538-3873/ade0ea</a>'
  chicago: 'Bhattacharjee, Soumyadeep , Zachary P. Vanderbosch, Mark A. Hollands,
    Pier-Emmanuel Tremblay, Siyi Xu, Joseph A. Guidry, J.J. Hermes, et al. “A ZTF
    Search for Circumstellar Debris Transits in White Dwarfs: Six New Candidates,
    One with Gas Disk Emission, Identified in a Novel Metric Space.” <i>Publications
    of the Astronomical Society of the Pacific</i>. IOP Publishing, 2025. <a href="https://doi.org/10.1088/1538-3873/ade0ea">https://doi.org/10.1088/1538-3873/ade0ea</a>.'
  ieee: 'S. Bhattacharjee <i>et al.</i>, “A ZTF search for circumstellar debris transits
    in White Dwarfs: Six new candidates, one with gas disk emission, identified in
    a novel metric space,” <i>Publications of the Astronomical Society of the Pacific</i>,
    vol. 137, no. 7. IOP Publishing, 2025.'
  ista: 'Bhattacharjee S, Vanderbosch ZP, Hollands MA, Tremblay P-E, Xu S, Guidry
    JA, Hermes JJ, Caiazzo I, Rodriguez AC, van Roestel J, El-Badry K, Drake AJ, Roulston
    BR, Riddle R, Rusholme B, Groom SL, Smith R, Toloza O. 2025. A ZTF search for
    circumstellar debris transits in White Dwarfs: Six new candidates, one with gas
    disk emission, identified in a novel metric space. Publications of the Astronomical
    Society of the Pacific. 137(7), 074202.'
  mla: 'Bhattacharjee, Soumyadeep, et al. “A ZTF Search for Circumstellar Debris Transits
    in White Dwarfs: Six New Candidates, One with Gas Disk Emission, Identified in
    a Novel Metric Space.” <i>Publications of the Astronomical Society of the Pacific</i>,
    vol. 137, no. 7, 074202, IOP Publishing, 2025, doi:<a href="https://doi.org/10.1088/1538-3873/ade0ea">10.1088/1538-3873/ade0ea</a>.'
  short: S. Bhattacharjee, Z.P. Vanderbosch, M.A. Hollands, P.-E. Tremblay, S. Xu,
    J.A. Guidry, J.J. Hermes, I. Caiazzo, A.C. Rodriguez, J. van Roestel, K. El-Badry,
    A.J. Drake, B.R. Roulston, R. Riddle, B. Rusholme, S.L. Groom, R. Smith, O. Toloza,
    Publications of the Astronomical Society of the Pacific 137 (2025).
date_created: 2026-02-16T15:10:51Z
date_published: 2025-07-09T00:00:00Z
date_updated: 2026-02-17T11:35:53Z
day: '09'
ddc:
- '520'
department:
- _id: IlCa
doi: 10.1088/1538-3873/ade0ea
external_id:
  arxiv:
  - '2502.05502'
file:
- access_level: open_access
  checksum: 237eddc36e3823b3092fab6aa5bc8655
  content_type: application/pdf
  creator: dernst
  date_created: 2026-02-17T11:30:29Z
  date_updated: 2026-02-17T11:30:29Z
  file_id: '21289'
  file_name: 2025_PASP_Bhattacharjee.pdf
  file_size: 8900420
  relation: main_file
  success: 1
file_date_updated: 2026-02-17T11:30:29Z
has_accepted_license: '1'
intvolume: '       137'
issue: '7'
language:
- iso: eng
license: https://creativecommons.org/licenses/by/3.0/
month: '07'
oa: 1
oa_version: Published Version
publication: Publications of the Astronomical Society of the Pacific
publication_identifier:
  issn:
  - 1538-3873
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
status: public
title: 'A ZTF search for circumstellar debris transits in White Dwarfs: Six new candidates,
  one with gas disk emission, identified in a novel metric space'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/3.0/legalcode
  name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)
  short: CC BY (3.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 137
year: '2025'
...
---
OA_place: publisher
OA_type: diamond
PlanS_conform: '1'
_id: '21244'
abstract:
- lang: eng
  text: 'Given a family of varieties over the projective line, we study the density
    of fibres that are everywhere locally soluble in the case that components of higher
    multiplicity are allowed. We use log geometry to formulate a new sparsity criterion
    for the existence of everywhere locally soluble fibres and formulate new conjectures
    that generalise previous work of Loughran and Smeets. These conjectures involve
    geometric invariants of the associated multiplicity orbifolds on the base of the
    fibration in the spirit of Campana. We give evidence for the conjectures by providing
    an assortment of bounds using Chebotarev’s theorem and sieve methods, with most
    of the evidence involving upper bounds. '
acknowledgement: We are very grateful to Tim Santens for useful conversations and
  to the anonymous referees for numerous pertinent remarks. While working on this
  paper, Browning was supported by a FWF grant (DOI 10.55776/P32428), Lyczak was supported
  by UKRI MR/V021362/1, and Smeets was supported by grant G0B1721N of the Fund for
  Scientific Research – Flanders.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Timothy D
  full_name: Browning, Timothy D
  id: 35827D50-F248-11E8-B48F-1D18A9856A87
  last_name: Browning
  orcid: 0000-0002-8314-0177
- first_name: Julian
  full_name: Lyczak, Julian
  last_name: Lyczak
- first_name: Arne
  full_name: Smeets, Arne
  last_name: Smeets
citation:
  ama: Browning TD, Lyczak J, Smeets A. Paucity of rational points on fibrations with
    multiple fibres. <i>Algebra &#38; Number Theory</i>. 2025;19(10):2049-2090. doi:<a
    href="https://doi.org/10.2140/ant.2025.19.2049">10.2140/ant.2025.19.2049</a>
  apa: Browning, T. D., Lyczak, J., &#38; Smeets, A. (2025). Paucity of rational points
    on fibrations with multiple fibres. <i>Algebra &#38; Number Theory</i>. Mathematical
    Sciences Publishers. <a href="https://doi.org/10.2140/ant.2025.19.2049">https://doi.org/10.2140/ant.2025.19.2049</a>
  chicago: Browning, Timothy D, Julian Lyczak, and Arne Smeets. “Paucity of Rational
    Points on Fibrations with Multiple Fibres.” <i>Algebra &#38; Number Theory</i>.
    Mathematical Sciences Publishers, 2025. <a href="https://doi.org/10.2140/ant.2025.19.2049">https://doi.org/10.2140/ant.2025.19.2049</a>.
  ieee: T. D. Browning, J. Lyczak, and A. Smeets, “Paucity of rational points on fibrations
    with multiple fibres,” <i>Algebra &#38; Number Theory</i>, vol. 19, no. 10. Mathematical
    Sciences Publishers, pp. 2049–2090, 2025.
  ista: Browning TD, Lyczak J, Smeets A. 2025. Paucity of rational points on fibrations
    with multiple fibres. Algebra &#38; Number Theory. 19(10), 2049–2090.
  mla: Browning, Timothy D., et al. “Paucity of Rational Points on Fibrations with
    Multiple Fibres.” <i>Algebra &#38; Number Theory</i>, vol. 19, no. 10, Mathematical
    Sciences Publishers, 2025, pp. 2049–90, doi:<a href="https://doi.org/10.2140/ant.2025.19.2049">10.2140/ant.2025.19.2049</a>.
  short: T.D. Browning, J. Lyczak, A. Smeets, Algebra &#38; Number Theory 19 (2025)
    2049–2090.
corr_author: '1'
date_created: 2026-02-16T15:22:19Z
date_published: 2025-09-05T00:00:00Z
date_updated: 2026-02-17T11:59:57Z
day: '05'
ddc:
- '510'
department:
- _id: TiBr
doi: 10.2140/ant.2025.19.2049
external_id:
  arxiv:
  - '2310.01135'
file:
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  checksum: e50a60a4303b81563f7adbcadbe2e986
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  date_updated: 2026-02-17T11:56:20Z
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  file_size: 1505580
  relation: main_file
  success: 1
file_date_updated: 2026-02-17T11:56:20Z
has_accepted_license: '1'
intvolume: '        19'
issue: '10'
language:
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month: '09'
oa: 1
oa_version: Published Version
page: 2049-2090
project:
- _id: 26AEDAB2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P32428
  name: New frontiers of the Manin conjecture
publication: Algebra & Number Theory
publication_identifier:
  eissn:
  - 1944-7833
  issn:
  - 1937-0652
publication_status: published
publisher: Mathematical Sciences Publishers
quality_controlled: '1'
status: public
title: Paucity of rational points on fibrations with multiple fibres
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 19
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21245'
abstract:
- lang: eng
  text: Flickering light is a new promising, fully non-invasive brain stimulation
    technique that utilizes intermittent sensory stimulation to induce brainwave synchronization
    (entrainment). While the effects of 40 Hz externally induced neural entrainment
    have been extensively described, little is known about 60 Hz entrainment in humans.
    This study presents preliminary observations on the neural and somatic response
    to flickering 60 Hz light in healthy volunteers over a 3-week period. Fourteen
    volunteers were randomized to receive either 60 Hz flickering white light or constant
    light as sham (30-min sessions, 3 weeks, 5 days/week on weekdays). Neural entrainment
    was assessed with EEG on days 1, 5 and 19. Salivary cortisol and C-reactive protein
    (CRP) levels, measured with ELISA, assessed the somatic response to stimulation.
    Side effects and well-being were monitored via questionnaires. EEG recordings
    showed neural entrainment and synchrony in response to 60 Hz flickering light
    across multiple cortical regions, including occipital, central, temporal, and
    frontal areas. The entrainment power and synchronization between different cortical
    regions declined significantly by day 19 compared to day 1, indicating possible
    neural habituation. Cortisol and CRP salivary levels were unchanged, and minor
    side effects were reported with equal frequency in the active and sham groups.
    Our findings show that 60 Hz flickering light can induce significant neural entrainment
    and synchrony in healthy adults and is well tolerated. The decline in entrainment
    strength and neural synchrony observed with repeated 60 Hz stimulations suggests
    plastic changes in the cortex. To the best of our knowledge, this is the first
    study to characterize neural and somatic responses to repeated 60 Hz flickering
    visual stimuli. Given the well-known connection between 60 Hz brain oscillations
    and cognition, neuroplasticity, and their role in neuropsychiatric disorders,
    additional research in both preclinical and clinical settings is warranted.
acknowledgement: This study was funded by Syntropic Medical and supported by an Austria
  Wirtschaftsservice (AWS) grant (grant number P2414247 to Syntropic Medical). Syntropic
  Medical employees were involved in study design, data collection and analysis, decision
  to publish, and preparation of the manuscript. AWS had no role in study design,
  data collection and analysis, decision to publish, or preparation of the manuscript.
article_number: e0332310
article_processing_charge: Yes
article_type: original
author:
- first_name: MohammadAmin
  full_name: Alamalhoda, MohammadAmin
  last_name: Alamalhoda
- first_name: Friederike
  full_name: Leesch, Friederike
  last_name: Leesch
- first_name: Francesca
  full_name: Giovanetti, Francesca
  last_name: Giovanetti
- first_name: Eoghan
  full_name: Dunne, Eoghan
  last_name: Dunne
- first_name: Giuseppina
  full_name: Pilloni, Giuseppina
  last_name: Pilloni
- first_name: Mark
  full_name: Caffrey, Mark
  last_name: Caffrey
- first_name: Jack
  full_name: O’Keeffe, Jack
  last_name: O’Keeffe
- first_name: Alessandro
  full_name: Venturino, Alessandro
  id: 41CB84B2-F248-11E8-B48F-1D18A9856A87
  last_name: Venturino
  orcid: 0000-0003-2356-9403
- first_name: Maria Teresa
  full_name: Ferretti, Maria Teresa
  last_name: Ferretti
citation:
  ama: Alamalhoda M, Leesch F, Giovanetti F, et al. Exploring neural entrainment and
    synchrony in response to repeated 60 Hz flickering white light in healthy volunteers.
    <i>PLOS One</i>. 2025;20(10). doi:<a href="https://doi.org/10.1371/journal.pone.0332310">10.1371/journal.pone.0332310</a>
  apa: Alamalhoda, M., Leesch, F., Giovanetti, F., Dunne, E., Pilloni, G., Caffrey,
    M., … Ferretti, M. T. (2025). Exploring neural entrainment and synchrony in response
    to repeated 60 Hz flickering white light in healthy volunteers. <i>PLOS One</i>.
    Public Library of Science. <a href="https://doi.org/10.1371/journal.pone.0332310">https://doi.org/10.1371/journal.pone.0332310</a>
  chicago: Alamalhoda, MohammadAmin, Friederike Leesch, Francesca Giovanetti, Eoghan
    Dunne, Giuseppina Pilloni, Mark Caffrey, Jack O’Keeffe, Alessandro Venturino,
    and Maria Teresa Ferretti. “Exploring Neural Entrainment and Synchrony in Response
    to Repeated 60 Hz Flickering White Light in Healthy Volunteers.” <i>PLOS One</i>.
    Public Library of Science, 2025. <a href="https://doi.org/10.1371/journal.pone.0332310">https://doi.org/10.1371/journal.pone.0332310</a>.
  ieee: M. Alamalhoda <i>et al.</i>, “Exploring neural entrainment and synchrony in
    response to repeated 60 Hz flickering white light in healthy volunteers,” <i>PLOS
    One</i>, vol. 20, no. 10. Public Library of Science, 2025.
  ista: Alamalhoda M, Leesch F, Giovanetti F, Dunne E, Pilloni G, Caffrey M, O’Keeffe
    J, Venturino A, Ferretti MT. 2025. Exploring neural entrainment and synchrony
    in response to repeated 60 Hz flickering white light in healthy volunteers. PLOS
    One. 20(10), e0332310.
  mla: Alamalhoda, MohammadAmin, et al. “Exploring Neural Entrainment and Synchrony
    in Response to Repeated 60 Hz Flickering White Light in Healthy Volunteers.” <i>PLOS
    One</i>, vol. 20, no. 10, e0332310, Public Library of Science, 2025, doi:<a href="https://doi.org/10.1371/journal.pone.0332310">10.1371/journal.pone.0332310</a>.
  short: M. Alamalhoda, F. Leesch, F. Giovanetti, E. Dunne, G. Pilloni, M. Caffrey,
    J. O’Keeffe, A. Venturino, M.T. Ferretti, PLOS One 20 (2025).
date_created: 2026-02-16T15:29:26Z
date_published: 2025-10-07T00:00:00Z
date_updated: 2026-02-17T12:19:15Z
day: '07'
ddc:
- '570'
department:
- _id: SaSi
doi: 10.1371/journal.pone.0332310
external_id:
  pmid:
  - '41056352 '
file:
- access_level: open_access
  checksum: 22a4e92a733152633c4553f107f66765
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  creator: dernst
  date_created: 2026-02-17T12:16:18Z
  date_updated: 2026-02-17T12:16:18Z
  file_id: '21301'
  file_name: 2025_PlosOne_Alamalhoda.pdf
  file_size: 1388424
  relation: main_file
  success: 1
file_date_updated: 2026-02-17T12:16:18Z
has_accepted_license: '1'
intvolume: '        20'
issue: '10'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
pmid: 1
publication: PLOS One
publication_identifier:
  eissn:
  - 1932-6203
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
related_material:
  link:
  - relation: software
    url: https://github.com/AminAlam/HVS
status: public
title: Exploring neural entrainment and synchrony in response to repeated 60 Hz flickering
  white light in healthy volunteers
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 20
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
PlanS_conform: '1'
_id: '21246'
abstract:
- lang: eng
  text: Stellar astrophysics relies on diverse observational modalities—primarily
    photometric light curves and spectroscopic data—from which fundamental stellar
    properties are inferred. While machine learning (ML) has advanced analysis within
    individual modalities, the complementary information encoded across modalities
    remains largely underexploited. We present the dual embedding for stellar astronomy
    (DESA) model, a novel multimodal foundation model that integrates light curves
    and spectra to learn a unified, physically meaningful latent space for stars.
    DESA first trains separate modality-specific encoders using a hybrid supervised/self-supervised
    scheme, and then aligns them through DualFormer, a transformer-based cross-modal
    integration module tailored for astrophysical data. DualFormer combines cross-
    and self-attention, a novel dual-projection alignment loss, and a projection-space
    eigendecomposition that yields physically structured embeddings. We demonstrate
    that DESA significantly outperforms leading unimodal and self-supervised baselines
    across a range of tasks. In zero- and few-shot settings, DESA’s learned representations
    recover stellar color–magnitude and Hertzsprung–Russell diagrams with high fidelity
    (R2 = 0.92 for photometric regressions). In full fine-tuning, DESA achieves state-of-the-art
    accuracy for binary star detection (AUC = 0.99, AP = 1.00) and stellar age prediction
    (RMSE = 0.94 Gyr). As a compelling case, DESA naturally separates synchronized
    binaries from young stars—two populations with nearly identical light curves—purely
    from their embedded positions in UMAP space, without requiring external kinematic
    or luminosity information. DESA thus offers a powerful new framework for multimodal,
    data-driven stellar population analysis, enabling both accurate prediction and
    novel discovery.
acknowledgement: This research was partially supported by the Israeli Science Foundation
  grant 1834/24.
article_number: '110'
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Ilay
  full_name: Kamai, Ilay
  last_name: Kamai
- first_name: Alexander
  full_name: Bronstein, Alexander
  id: 58f3726e-7cba-11ef-ad8b-e6e8cb3904e6
  last_name: Bronstein
  orcid: 0000-0001-9699-8730
- first_name: Hagai B.
  full_name: Perets, Hagai B.
  last_name: Perets
citation:
  ama: Kamai I, Bronstein AM, Perets HB. Machine Learning inference of stellar properties
    using integrated photometric and spectroscopic data. <i>The Astrophysical Journal</i>.
    2025;994. doi:<a href="https://doi.org/10.3847/1538-4357/ae0cbc">10.3847/1538-4357/ae0cbc</a>
  apa: Kamai, I., Bronstein, A. M., &#38; Perets, H. B. (2025). Machine Learning inference
    of stellar properties using integrated photometric and spectroscopic data. <i>The
    Astrophysical Journal</i>. IOP Publishing. <a href="https://doi.org/10.3847/1538-4357/ae0cbc">https://doi.org/10.3847/1538-4357/ae0cbc</a>
  chicago: Kamai, Ilay, Alex M. Bronstein, and Hagai B. Perets. “Machine Learning
    Inference of Stellar Properties Using Integrated Photometric and Spectroscopic
    Data.” <i>The Astrophysical Journal</i>. IOP Publishing, 2025. <a href="https://doi.org/10.3847/1538-4357/ae0cbc">https://doi.org/10.3847/1538-4357/ae0cbc</a>.
  ieee: I. Kamai, A. M. Bronstein, and H. B. Perets, “Machine Learning inference of
    stellar properties using integrated photometric and spectroscopic data,” <i>The
    Astrophysical Journal</i>, vol. 994. IOP Publishing, 2025.
  ista: Kamai I, Bronstein AM, Perets HB. 2025. Machine Learning inference of stellar
    properties using integrated photometric and spectroscopic data. The Astrophysical
    Journal. 994, 110.
  mla: Kamai, Ilay, et al. “Machine Learning Inference of Stellar Properties Using
    Integrated Photometric and Spectroscopic Data.” <i>The Astrophysical Journal</i>,
    vol. 994, 110, IOP Publishing, 2025, doi:<a href="https://doi.org/10.3847/1538-4357/ae0cbc">10.3847/1538-4357/ae0cbc</a>.
  short: I. Kamai, A.M. Bronstein, H.B. Perets, The Astrophysical Journal 994 (2025).
date_created: 2026-02-16T15:35:29Z
date_published: 2025-11-19T00:00:00Z
date_updated: 2026-02-17T12:33:19Z
day: '19'
ddc:
- '520'
- '000'
department:
- _id: AlBr
doi: 10.3847/1538-4357/ae0cbc
external_id:
  arxiv:
  - '2507.10666'
file:
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  checksum: 255ffd6d664e6c2d1cffbaced650bd10
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  creator: dernst
  date_created: 2026-02-17T12:32:18Z
  date_updated: 2026-02-17T12:32:18Z
  file_id: '21302'
  file_name: 2025_AstrophysicalJournal_Kamai.pdf
  file_size: 16415089
  relation: main_file
  success: 1
file_date_updated: 2026-02-17T12:32:18Z
has_accepted_license: '1'
intvolume: '       994'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
publication: The Astrophysical Journal
publication_identifier:
  eissn:
  - 1538-4357
  issn:
  - 0004-637X
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
status: public
title: Machine Learning inference of stellar properties using integrated photometric
  and spectroscopic data
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 994
year: '2025'
...
