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4100 Publications
2017 | Conference Paper | IST-REx-ID: 1003 |

An abstraction-refinement methodology for reasoning about network games
G. Avni, S. Guha, O. Kupferman, in:, AAAI Press, 2017, pp. 70–76.
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G. Avni, S. Guha, O. Kupferman, in:, AAAI Press, 2017, pp. 70–76.
2017 | Journal Article | IST-REx-ID: 1004 |

Spatiotemporal mechanisms of root branching
K. Ötvös, E. Benková, Current Opinion in Genetics & Development 45 (2017) 82–89.
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| PubMed | Europe PMC
K. Ötvös, E. Benková, Current Opinion in Genetics & Development 45 (2017) 82–89.
2017 | Journal Article | IST-REx-ID: 1007 |

Zeros of nonlinear systems with input invariances
M. Lang, E. Sontag, Automatica 81C (2017) 46–55.
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M. Lang, E. Sontag, Automatica 81C (2017) 46–55.
2017 | Conference Paper | IST-REx-ID: 1009 |

Optimizing expectation with guarantees in POMDPs
K. Chatterjee, P. Novotný, G. Pérez, J. Raskin, D. Zikelic, in:, Proceedings of the 31st AAAI Conference on Artificial Intelligence, AAAI Press, 2017, pp. 3725–3732.
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K. Chatterjee, P. Novotný, G. Pérez, J. Raskin, D. Zikelic, in:, Proceedings of the 31st AAAI Conference on Artificial Intelligence, AAAI Press, 2017, pp. 3725–3732.
2017 | Journal Article | IST-REx-ID: 1010 |

Local law for random Gram matrices
J. Alt, L. Erdös, T.H. Krüger, Electronic Journal of Probability 22 (2017).
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| arXiv
J. Alt, L. Erdös, T.H. Krüger, Electronic Journal of Probability 22 (2017).
2017 | Conference Paper | IST-REx-ID: 1011 |

Faster algorithms for weighted recursive state machines
K. Chatterjee, B. Kragl, S. Mishra, A. Pavlogiannis, in:, H. Yang (Ed.), Springer, 2017, pp. 287–313.
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K. Chatterjee, B. Kragl, S. Mishra, A. Pavlogiannis, in:, H. Yang (Ed.), Springer, 2017, pp. 287–313.
2017 | Journal Article | IST-REx-ID: 1015 |

Vortices and antivortices in two-dimensional ultracold Fermi gases
G. Bighin, L. Salasnich, Scientific Reports 7 (2017).
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G. Bighin, L. Salasnich, Scientific Reports 7 (2017).
2017 | Journal Article | IST-REx-ID: 1016
Uner Tan syndrome caused by a homozygous TUBB2B mutation affecting microtubule stability
M. Breuss, T. Nguyen, A. Srivatsan, I. Leca, G. Tian, T. Fritz, A.H. Hansen, D. Musaev, J. Mcevoy Venneri, J. Kiely, R. Rosti, E. Scott, U. Tan, R. Kolodner, N. Cowan, D. Keays, J. Gleeson, Human Molecular Genetics 26 (2017) 258–269.
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M. Breuss, T. Nguyen, A. Srivatsan, I. Leca, G. Tian, T. Fritz, A.H. Hansen, D. Musaev, J. Mcevoy Venneri, J. Kiely, R. Rosti, E. Scott, U. Tan, R. Kolodner, N. Cowan, D. Keays, J. Gleeson, Human Molecular Genetics 26 (2017) 258–269.
2017 | Journal Article | IST-REx-ID: 1017 |

Tubulins and brain development: The origins of functional specification
M. Breuss, I. Leca, T. Gstrein, A.H. Hansen, D. Keays, Molecular and Cellular Neuroscience 84 (2017) 58–67.
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M. Breuss, I. Leca, T. Gstrein, A.H. Hansen, D. Keays, Molecular and Cellular Neuroscience 84 (2017) 58–67.
2017 | Journal Article | IST-REx-ID: 1018
Light regulated expression of sensor histidine kinase CKI1 controls cytokinin related development
T. Dobisova, V. Hrdinova, C. Cuesta, S. Michlickova, I. Urbankova, R. Hejatkova, P. Zadnikova, M. Pernisová, E. Benková, J. Hejátko, Plant Physiology 174 (2017) 387–404.
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T. Dobisova, V. Hrdinova, C. Cuesta, S. Michlickova, I. Urbankova, R. Hejatkova, P. Zadnikova, M. Pernisová, E. Benková, J. Hejátko, Plant Physiology 174 (2017) 387–404.
2017 | Journal Article | IST-REx-ID: 1020 |

Disordered cellulose based nanostructures for enhanced light scattering
S. Caixeiro, M. Peruzzo, O. Onelli, S. Vignolini, R. Sapienza, ACS Applied Materials and Interfaces 9 (2017) 7885–7890.
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S. Caixeiro, M. Peruzzo, O. Onelli, S. Vignolini, R. Sapienza, ACS Applied Materials and Interfaces 9 (2017) 7885–7890.
2017 | Journal Article | IST-REx-ID: 1021 |

Boundary layer turbulence in experiments on quasi Keplerian flows
J.M. Lopez Alonso, M. Avila, Journal of Fluid Mechanics 817 (2017) 21–34.
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J.M. Lopez Alonso, M. Avila, Journal of Fluid Mechanics 817 (2017) 21–34.
2017 | Journal Article | IST-REx-ID: 1022 |

The topology of the cosmic web in terms of persistent Betti numbers
P. Pranav, H. Edelsbrunner, R. Van De Weygaert, G. Vegter, M. Kerber, B. Jones, M. Wintraecken, Monthly Notices of the Royal Astronomical Society 465 (2017) 4281–4310.
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P. Pranav, H. Edelsbrunner, R. Van De Weygaert, G. Vegter, M. Kerber, B. Jones, M. Wintraecken, Monthly Notices of the Royal Astronomical Society 465 (2017) 4281–4310.
2017 | Journal Article | IST-REx-ID: 1023 |

Local law for the product of independent non-Hermitian random matrices with independent entries
Y. Nemish, Electronic Journal of Probability 22 (2017).
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Y. Nemish, Electronic Journal of Probability 22 (2017).
2017 | Journal Article | IST-REx-ID: 1025
Cell biology: Stretched divisions
C.-P.J. Heisenberg, Nature 543 (2017) 43–44.
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| DOI
C.-P.J. Heisenberg, Nature 543 (2017) 43–44.
2017 | Journal Article | IST-REx-ID: 10416 |

Optimal Dyck reachability for data-dependence and Alias analysis
K. Chatterjee, B. Choudhary, A. Pavlogiannis, Proceedings of the ACM on Programming Languages 2 (2017).
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| arXiv
K. Chatterjee, B. Choudhary, A. Pavlogiannis, Proceedings of the ACM on Programming Languages 2 (2017).
2017 | Journal Article | IST-REx-ID: 10417 |

Data-centric dynamic partial order reduction
M. Chalupa, K. Chatterjee, A. Pavlogiannis, N. Sinha, K. Vaidya, Proceedings of the ACM on Programming Languages 2 (2017).
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| arXiv
M. Chalupa, K. Chatterjee, A. Pavlogiannis, N. Sinha, K. Vaidya, Proceedings of the ACM on Programming Languages 2 (2017).
2017 | Journal Article | IST-REx-ID: 10418 |

A new proof rule for almost-sure termination
A. Mciver, C. Morgan, B.L. Kaminski, J.P. Katoen, Proceedings of the ACM on Programming Languages 2 (2017).
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| arXiv
A. Mciver, C. Morgan, B.L. Kaminski, J.P. Katoen, Proceedings of the ACM on Programming Languages 2 (2017).
2017 | Journal Article | IST-REx-ID: 2016 |

Exact goodness-of-fit testing for the Ising model
A. Martin Del Campo Sanchez, S.A. Cepeda Humerez, C. Uhler, Scandinavian Journal of Statistics 44 (2017) 285–306.
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| arXiv
A. Martin Del Campo Sanchez, S.A. Cepeda Humerez, C. Uhler, Scandinavian Journal of Statistics 44 (2017) 285–306.
2017 | Conference Paper | IST-REx-ID: 274 |

A faster approximation algorithm for the Gibbs partition function
V. Kolmogorov, in:, Proceedings of the 31st Conference On Learning Theory, PMLR, 2017, pp. 228–249.
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V. Kolmogorov, in:, Proceedings of the 31st Conference On Learning Theory, PMLR, 2017, pp. 228–249.
2017 | Thesis | IST-REx-ID: 938 |

Investigations into cell polarity and trafficking in the plant model Arabidopsis thaliana
M. Adamowski, Investigations into Cell Polarity and Trafficking in the Plant Model Arabidopsis Thaliana , IST Austria, 2017.
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M. Adamowski, Investigations into Cell Polarity and Trafficking in the Plant Model Arabidopsis Thaliana , IST Austria, 2017.
2017 | Journal Article | IST-REx-ID: 939 |

Waveguides with absorbing boundaries: Nonlinearity controlled by an exceptional point and solitons
B. Midya, V. Konotop, Physical Review Letters 119 (2017).
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B. Midya, V. Konotop, Physical Review Letters 119 (2017).
2017 | Conference Paper | IST-REx-ID: 941
JFIX: Semantics-based repair of Java programs via symbolic PathFinder
X. Le, D.H. Chu, D. Lo, C. Le Goues, W. Visser, in:, Proceedings of the 26th ACM SIGSOFT International Symposium on Software Testing and Analysis, ACM, 2017, pp. 376–379.
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X. Le, D.H. Chu, D. Lo, C. Le Goues, W. Visser, in:, Proceedings of the 26th ACM SIGSOFT International Symposium on Software Testing and Analysis, ACM, 2017, pp. 376–379.
2017 | Conference Paper | IST-REx-ID: 942
S3: Syntax- and semantic-guided repair synthesis via programming by examples
X. Le, D.H. Chu, D. Lo, C. Le Goues, W. Visser, in:, ACM, 2017, pp. 593–604.
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X. Le, D.H. Chu, D. Lo, C. Le Goues, W. Visser, in:, ACM, 2017, pp. 593–604.
2017 | Journal Article | IST-REx-ID: 943 |

Decoding of position in the developing neural tube from antiparallel morphogen gradients
M.P. Zagórski, Y. Tabata, N. Brandenberg, M. Lutolf, G. Tkačik, T. Bollenbach, J. Briscoe, A. Kicheva, Science 356 (2017) 1379–1383.
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| PubMed | Europe PMC
M.P. Zagórski, Y. Tabata, N. Brandenberg, M. Lutolf, G. Tkačik, T. Bollenbach, J. Briscoe, A. Kicheva, Science 356 (2017) 1379–1383.
2017 | Journal Article | IST-REx-ID: 944
Mosaic analysis with double markers reveals distinct sequential functions of Lgl1 in neural stem cells
R.J. Beattie, M.P. Postiglione, L. Burnett, S. Laukoter, C. Streicher, F. Pauler, G. Xiao, O. Klezovitch, V. Vasioukhin, T. Ghashghaei, S. Hippenmeyer, Neuron 94 (2017) 517–533.e3.
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| DOI
R.J. Beattie, M.P. Postiglione, L. Burnett, S. Laukoter, C. Streicher, F. Pauler, G. Xiao, O. Klezovitch, V. Vasioukhin, T. Ghashghaei, S. Hippenmeyer, Neuron 94 (2017) 517–533.e3.
2017 | Journal Article | IST-REx-ID: 9445 |

DDM1 and Lsh remodelers allow methylation of DNA wrapped in nucleosomes
D.B. Lyons, D. Zilberman, ELife 6 (2017).
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| PubMed | Europe PMC
D.B. Lyons, D. Zilberman, ELife 6 (2017).
2017 | Journal Article | IST-REx-ID: 945 |

Global dosage compensation is ubiquitous in Lepidoptera, but counteracted by the masculinization of the Z chromosome
A.K. Huylmans, A. Macon, B. Vicoso, Molecular Biology and Evolution 34 (2017) 2637–2649.
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A.K. Huylmans, A. Macon, B. Vicoso, Molecular Biology and Evolution 34 (2017) 2637–2649.
2017 | Journal Article | IST-REx-ID: 946 |

Live tracking of moving samples in confocal microscopy for vertically grown roots
D. von Wangenheim, R. Hauschild, M. Fendrych, V. Barone, E. Benková, J. Friml, ELife 6 (2017).
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D. von Wangenheim, R. Hauschild, M. Fendrych, V. Barone, E. Benková, J. Friml, ELife 6 (2017).
2017 | Journal Article | IST-REx-ID: 947 |

Quantifying the entropic cost of cellular growth control
D. De Martino, F. Capuani, A. De Martino, Physical Review E Statistical Nonlinear and Soft Matter Physics 96 (2017).
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D. De Martino, F. Capuani, A. De Martino, Physical Review E Statistical Nonlinear and Soft Matter Physics 96 (2017).
2017 | Conference Paper | IST-REx-ID: 950 |

Infinite-duration bidding games
G. Avni, T.A. Henzinger, V.K. Chonev, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.
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| DOI
| arXiv
G. Avni, T.A. Henzinger, V.K. Chonev, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.
2017 | Journal Article | IST-REx-ID: 9506 |

An evolutionary case for functional gene body methylation in plants and animals
D. Zilberman, Genome Biology 18 (2017).
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| PubMed | Europe PMC
D. Zilberman, Genome Biology 18 (2017).
2017 | Journal Article | IST-REx-ID: 951 |

Local introduction and heterogeneous spatial spread of dengue-suppressing Wolbachia through an urban population of Aedes Aegypti
T. Schmidt, N.H. Barton, G. Rasic, A. Turley, B. Montgomery, I. Iturbe Ormaetxe, P. Cook, P. Ryan, S. Ritchie, A. Hoffmann, S. O’Neill, M. Turelli, PLoS Biology 15 (2017).
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T. Schmidt, N.H. Barton, G. Rasic, A. Turley, B. Montgomery, I. Iturbe Ormaetxe, P. Cook, P. Ryan, S. Ritchie, A. Hoffmann, S. O’Neill, M. Turelli, PLoS Biology 15 (2017).
2017 | Journal Article | IST-REx-ID: 952 |

Deploying dengue-suppressing Wolbachia: Robust models predict slow but effective spatial spread in Aedes aegypti
M. Turelli, N.H. Barton, Theoretical Population Biology 115 (2017) 45–60.
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| PubMed | Europe PMC
M. Turelli, N.H. Barton, Theoretical Population Biology 115 (2017) 45–60.
2017 | Journal Article | IST-REx-ID: 953 |

The sources of adaptive evolution
D. Charlesworth, N.H. Barton, B. Charlesworth, Proceedings of the Royal Society of London Series B Biological Sciences 284 (2017).
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D. Charlesworth, N.H. Barton, B. Charlesworth, Proceedings of the Royal Society of London Series B Biological Sciences 284 (2017).
2017 | Journal Article | IST-REx-ID: 954 |

On the mechanistic nature of epistasis in a canonical cis-regulatory element
M. Lagator, T. Paixao, N.H. Barton, J.P. Bollback, C.C. Guet, ELife 6 (2017).
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M. Lagator, T. Paixao, N.H. Barton, J.P. Bollback, C.C. Guet, ELife 6 (2017).
2017 | Journal Article | IST-REx-ID: 955 |

Evolution of new regulatory functions on biophysically realistic fitness landscapes
T. Friedlander, R. Prizak, N.H. Barton, G. Tkačik, Nature Communications 8 (2017).
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T. Friedlander, R. Prizak, N.H. Barton, G. Tkačik, Nature Communications 8 (2017).
2017 | Journal Article | IST-REx-ID: 956 |

Gradient flow and entropy inequalities for quantum Markov semigroups with detailed balance
E. Carlen, J. Maas, Journal of Functional Analysis 273 (2017) 1810–1869.
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E. Carlen, J. Maas, Journal of Functional Analysis 273 (2017) 1810–1869.
2017 | Book Chapter | IST-REx-ID: 957
Ancestral protein reconstruction and circular permutation for improving the stability and dynamic range of FRET sensors
B. Clifton, J. Whitfield, I. Sanchez-Romero, M. Herde, C. Henneberger, H.L. Janovjak, C. Jackson, in:, V. Stein (Ed.), Synthetic Protein Switches, Springer, 2017, pp. 71–87.
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| DOI
B. Clifton, J. Whitfield, I. Sanchez-Romero, M. Herde, C. Henneberger, H.L. Janovjak, C. Jackson, in:, V. Stein (Ed.), Synthetic Protein Switches, Springer, 2017, pp. 71–87.
2017 | Book Chapter | IST-REx-ID: 958
Method for developing optical sensors using a synthetic dye fluorescent protein FRET pair and computational modeling and assessment
J. Mitchell, W. Zhang, M. Herde, C. Henneberger, H.L. Janovjak, M. O’Mara, C. Jackson, in:, V. Stein (Ed.), Synthetic Protein Switches, Springer, 2017, pp. 89–99.
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| DOI
J. Mitchell, W. Zhang, M. Herde, C. Henneberger, H.L. Janovjak, M. O’Mara, C. Jackson, in:, V. Stein (Ed.), Synthetic Protein Switches, Springer, 2017, pp. 89–99.
2017 | Journal Article | IST-REx-ID: 959 |

Scales and multimodal flux distributions in stationary metabolic network models via thermodynamics
D. De Martino, Physical Review E Statistical Nonlinear and Soft Matter Physics 95 (2017) 062419.
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D. De Martino, Physical Review E Statistical Nonlinear and Soft Matter Physics 95 (2017) 062419.
2017 | Conference Paper | IST-REx-ID: 962
Model counting for recursively-defined strings
M. Trinh, D.H. Chu, J. Jaffar, in:, R. Majumdar, V. Kunčak (Eds.), Springer, 2017, pp. 399–418.
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| DOI
M. Trinh, D.H. Chu, J. Jaffar, in:, R. Majumdar, V. Kunčak (Eds.), Springer, 2017, pp. 399–418.
2017 | Conference Paper | IST-REx-ID: 963 |

Timed network games with clocks
G. Avni, S. Guha, O. Kupferman, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.
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G. Avni, S. Guha, O. Kupferman, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.
2017 | Research Data Reference | IST-REx-ID: 9844
Source data for figures and tables
N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).
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N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).
2017 | Research Data Reference | IST-REx-ID: 9845
Mathematical model
N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).
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N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).
2017 | Research Data Reference | IST-REx-ID: 9846
Supplementary methods
N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).
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N. Nikolic, F. Schreiber, A. Dal Co, D. Kiviet, T. Bergmiller, S. Littmann, M. Kuypers, M. Ackermann, (2017).
2017 | Research Data Reference | IST-REx-ID: 9849
Modelling and simulation details
M. Lukacisinova, S. Novak, T. Paixao, (2017).
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| Files available
| DOI
M. Lukacisinova, S. Novak, T. Paixao, (2017).
2017 | Research Data Reference | IST-REx-ID: 9850
Extensions of the model
M. Lukacisinova, S. Novak, T. Paixao, (2017).
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| Files available
| DOI
M. Lukacisinova, S. Novak, T. Paixao, (2017).
2017 | Research Data Reference | IST-REx-ID: 9851
Heuristic prediction for multiple stresses
M. Lukacisinova, S. Novak, T. Paixao, (2017).
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| Files available
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M. Lukacisinova, S. Novak, T. Paixao, (2017).
2017 | Research Data Reference | IST-REx-ID: 9852
Resistance frequencies for different combination strategies
M. Lukacisinova, S. Novak, T. Paixao, (2017).
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| Files available
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M. Lukacisinova, S. Novak, T. Paixao, (2017).
2017 | Research Data Reference | IST-REx-ID: 9855
Supplementary appendix
M.J. Chalk, P. Masset, B. Gutkin, S. Denève, (2017).
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| Files available
| DOI
M.J. Chalk, P. Masset, B. Gutkin, S. Denève, (2017).
2017 | Research Data Reference | IST-REx-ID: 9856
Supporting Information concerning additional likelihood analyses and results
T. Schmidt, N.H. Barton, G. Rasic, A. Turley, B. Montgomery, I. Iturbe Ormaetxe, P. Cook, P. Ryan, S. Ritchie, A. Hoffmann, S. O’Neill, M. Turelli, (2017).
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| Files available
| DOI
T. Schmidt, N.H. Barton, G. Rasic, A. Turley, B. Montgomery, I. Iturbe Ormaetxe, P. Cook, P. Ryan, S. Ritchie, A. Hoffmann, S. O’Neill, M. Turelli, (2017).
2017 | Research Data Reference | IST-REx-ID: 9857
Supporting information concerning observed wMel frequencies and analyses of habitat variables
T. Schmidt, N.H. Barton, G. Rasic, A. Turley, B. Montgomery, I. Iturbe Ormaetxe, P. Cook, P. Ryan, S. Ritchie, A. Hoffmann, S. O’Neill, M. Turelli, (2017).
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| Files available
| DOI
T. Schmidt, N.H. Barton, G. Rasic, A. Turley, B. Montgomery, I. Iturbe Ormaetxe, P. Cook, P. Ryan, S. Ritchie, A. Hoffmann, S. O’Neill, M. Turelli, (2017).
2017 | Research Data Reference | IST-REx-ID: 9858
Excel file with data on mosquito densities, Wolbachia infection status and housing characteristics
T. Schmidt, N.H. Barton, G. Rasic, A. Turley, B. Montgomery, I. Iturbe Ormaetxe, P. Cook, P. Ryan, S. Ritchie, A. Hoffmann, S. O’Neill, M. Turelli, (2017).
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| Files available
| DOI
T. Schmidt, N.H. Barton, G. Rasic, A. Turley, B. Montgomery, I. Iturbe Ormaetxe, P. Cook, P. Ryan, S. Ritchie, A. Hoffmann, S. O’Neill, M. Turelli, (2017).
2017 | Conference Paper | IST-REx-ID: 989
Transport based image morphing with intensity modulation
J. Maas, M. Rumpf, S. Simon, in:, F. Lauze, Y. Dong, A. Bjorholm Dahl (Eds.), Springer, 2017, pp. 563–577.
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| DOI
J. Maas, M. Rumpf, S. Simon, in:, F. Lauze, Y. Dong, A. Bjorholm Dahl (Eds.), Springer, 2017, pp. 563–577.
2017 | Journal Article | IST-REx-ID: 990 |

Divergence and evolution of assortative mating in a polygenic trait model of speciation with gene flow
H. Sachdeva, N.H. Barton, Evolution; International Journal of Organic Evolution 71 (2017) 1478–1493.
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| DOI
| PubMed | Europe PMC
H. Sachdeva, N.H. Barton, Evolution; International Journal of Organic Evolution 71 (2017) 1478–1493.
2017 | Journal Article | IST-REx-ID: 991
Synaptotagmins: That’s why so many
C. Chen, P.M. Jonas, Neuron 94 (2017) 694–696.
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| DOI
C. Chen, P.M. Jonas, Neuron 94 (2017) 694–696.
2017 | Thesis | IST-REx-ID: 992 |

Complexity of constraint satisfaction
M. Rolinek, Complexity of Constraint Satisfaction, IST Austria, 2017.
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| DOI
M. Rolinek, Complexity of Constraint Satisfaction, IST Austria, 2017.
2017 | Journal Article | IST-REx-ID: 993 |

Subsampling scaling
A. Levina (Martius), V. Priesemann, Nature Communications 8 (2017).
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| DOI
A. Levina (Martius), V. Priesemann, Nature Communications 8 (2017).
2017 | Journal Article | IST-REx-ID: 994 |

Fingerprints of angulon instabilities in the spectra of matrix-isolated molecules
I. Cherepanov, M. Lemeshko, Physical Review Materials 1 (2017).
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| Download Submitted Version (ext.)
I. Cherepanov, M. Lemeshko, Physical Review Materials 1 (2017).
2017 | Journal Article | IST-REx-ID: 995 |

Diagrammatic approach to orbital quantum impurities interacting with a many-particle environment
G. Bighin, M. Lemeshko, Physical Review B - Condensed Matter and Materials Physics 96 (2017).
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| DOI
| Download Submitted Version (ext.)
G. Bighin, M. Lemeshko, Physical Review B - Condensed Matter and Materials Physics 96 (2017).
2017 | Journal Article | IST-REx-ID: 996 |

Strongly aligned molecules inside helium droplets in the near-adiabatic regime
B. Shepperson, A. Chatterley, A. Søndergaard, L. Christiansen, M. Lemeshko, H. Stapelfeldt, The Journal of Chemical Physics 147 (2017).
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| DOI
| Download Submitted Version (ext.)
B. Shepperson, A. Chatterley, A. Søndergaard, L. Christiansen, M. Lemeshko, H. Stapelfeldt, The Journal of Chemical Physics 147 (2017).
2017 | Journal Article | IST-REx-ID: 997 |

Emergence of non-abelian magnetic monopoles in a quantum impurity problem
E. Yakaboylu, A. Deuchert, M. Lemeshko, APS Physics, Physical Review Letters 119 (2017).
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| DOI
| Download Submitted Version (ext.)
E. Yakaboylu, A. Deuchert, M. Lemeshko, APS Physics, Physical Review Letters 119 (2017).
2017 | Conference Paper | IST-REx-ID: 998 |

iCaRL: Incremental classifier and representation learning
S.A. Rebuffi, A. Kolesnikov, G. Sperl, C. Lampert, in:, IEEE, 2017, pp. 5533–5542.
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S.A. Rebuffi, A. Kolesnikov, G. Sperl, C. Lampert, in:, IEEE, 2017, pp. 5533–5542.
2017 | Conference Paper | IST-REx-ID: 999 |

Multi-task learning with labeled and unlabeled tasks
A. Pentina, C. Lampert, in:, Omnipress, 2017, pp. 2807–2816.
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A. Pentina, C. Lampert, in:, Omnipress, 2017, pp. 2807–2816.
2017 | Book Chapter | IST-REx-ID: 424 |

Bounding helly numbers via betti numbers
X. Goaoc, P. Paták, Z. Patakova, M. Tancer, U. Wagner, in:, M. Loebl, J. Nešetřil, R. Thomas (Eds.), A Journey through Discrete Mathematics: A Tribute to Jiri Matousek, Springer, 2017, pp. 407–447.
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X. Goaoc, P. Paták, Z. Patakova, M. Tancer, U. Wagner, in:, M. Loebl, J. Nešetřil, R. Thomas (Eds.), A Journey through Discrete Mathematics: A Tribute to Jiri Matousek, Springer, 2017, pp. 407–447.
2017 | Conference Paper | IST-REx-ID: 431 |

QSGD: Communication-efficient SGD via gradient quantization and encoding
D.-A. Alistarh, D. Grubic, J. Li, R. Tomioka, M. Vojnović, in:, Neural Information Processing Systems Foundation, Inc., 2017, pp. 1710–1721.
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| arXiv
D.-A. Alistarh, D. Grubic, J. Li, R. Tomioka, M. Vojnović, in:, Neural Information Processing Systems Foundation, Inc., 2017, pp. 1710–1721.
2017 | Conference Paper | IST-REx-ID: 432 |

ZipML: Training linear models with end-to-end low precision, and a little bit of deep learning
H. Zhang, J. Li, K. Kara, D.-A. Alistarh, J. Liu, C. Zhang, in:, Proceedings of Machine Learning Research, PMLR, 2017, pp. 4035–4043.
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H. Zhang, J. Li, K. Kara, D.-A. Alistarh, J. Liu, C. Zhang, in:, Proceedings of Machine Learning Research, PMLR, 2017, pp. 4035–4043.
2017 | Journal Article | IST-REx-ID: 481 |

Planar matchings for weighted straight skeletons
T. Biedl, S. Huber, P. Palfrader, International Journal of Computational Geometry and Applications 26 (2017) 211–229.
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T. Biedl, S. Huber, P. Palfrader, International Journal of Computational Geometry and Applications 26 (2017) 211–229.
2017 | Journal Article | IST-REx-ID: 681 |

Doomsday equilibria for omega-regular games
K. Chatterjee, L. Doyen, E. Filiot, J. Raskin, Information and Computation 254 (2017) 296–315.
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| arXiv
K. Chatterjee, L. Doyen, E. Filiot, J. Raskin, Information and Computation 254 (2017) 296–315.
2017 | Journal Article | IST-REx-ID: 1159 |

Cis-cinnamic acid is a novel natural auxin efflux inhibitor that promotes lateral root formation
W. Steenackers, P. Klíma, M. Quareshy, I. Cesarino, R. Kumpf, S. Corneillie, P. Araújo, T. Viaene, G. Goeminne, M. Nowack, K. Ljung, J. Friml, J. Blakeslee, O. Novák, E. Zažímalová, R. Napier, W. Boerjan, B. Vanholme, Plant Physiology 173 (2017) 552–565.
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| PubMed | Europe PMC
W. Steenackers, P. Klíma, M. Quareshy, I. Cesarino, R. Kumpf, S. Corneillie, P. Araújo, T. Viaene, G. Goeminne, M. Nowack, K. Ljung, J. Friml, J. Blakeslee, O. Novák, E. Zažímalová, R. Napier, W. Boerjan, B. Vanholme, Plant Physiology 173 (2017) 552–565.
2017 | Book Chapter | IST-REx-ID: 625 |

The cost of exactness in quantitative reachability
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, L. Aceto, G. Bacci, A. Ingólfsdóttir, A. Legay, R. Mardare (Eds.), Models, Algorithms, Logics and Tools, Springer, 2017, pp. 367–381.
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K. Chatterjee, L. Doyen, T.A. Henzinger, in:, L. Aceto, G. Bacci, A. Ingólfsdóttir, A. Legay, R. Mardare (Eds.), Models, Algorithms, Logics and Tools, Springer, 2017, pp. 367–381.
2017 | Book | IST-REx-ID: 567
A Dynamical Approach to Random Matrix Theory
L. Erdös, H. Yau, A Dynamical Approach to Random Matrix Theory, American Mathematical Society, 2017.
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L. Erdös, H. Yau, A Dynamical Approach to Random Matrix Theory, American Mathematical Society, 2017.
2017 | Book Chapter | IST-REx-ID: 649
Entropic Ricci curvature for discrete spaces
J. Maas, in:, L. Najman, P. Romon (Eds.), Modern Approaches to Discrete Curvature, Springer, 2017, pp. 159–174.
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J. Maas, in:, L. Najman, P. Romon (Eds.), Modern Approaches to Discrete Curvature, Springer, 2017, pp. 159–174.
2017 | Conference (Editor) | IST-REx-ID: 638
Numerical Software Verification
S. Bogomolov, M. Martel, P. Prabhakar, eds., Numerical Software Verification, Springer, 2017.
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| DOI
S. Bogomolov, M. Martel, P. Prabhakar, eds., Numerical Software Verification, Springer, 2017.
2017 | Journal Article | IST-REx-ID: 1528 |

Delocalization for a class of random block band matrices
Z. Bao, L. Erdös, Probability Theory and Related Fields 167 (2017) 673–776.
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Z. Bao, L. Erdös, Probability Theory and Related Fields 167 (2017) 673–776.
2017 | Thesis | IST-REx-ID: 202 |

Biology of restriction-modification systems at the single-cell and population level
M. Pleska, Biology of Restriction-Modification Systems at the Single-Cell and Population Level, IST Austria, 2017.
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M. Pleska, Biology of Restriction-Modification Systems at the Single-Cell and Population Level, IST Austria, 2017.
2017 | Journal Article | IST-REx-ID: 1013 |

Viewpoint: Microwave quantum states beat the heat
J.M. Fink, Physics 10 (2017).
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J.M. Fink, Physics 10 (2017).
2017 | Journal Article | IST-REx-ID: 653 |

Limited heterogeneity of known driver gene mutations among the metastases of individual patients with pancreatic cancer
A. Makohon Moore, M. Zhang, J. Reiter, I. Božić, B. Allen, D. Kundu, K. Chatterjee, F. Wong, Y. Jiao, Z. Kohutek, J. Hong, M. Attiyeh, B. Javier, L. Wood, R. Hruban, M. Nowak, N. Papadopoulos, K. Kinzler, B. Vogelstein, C. Iacobuzio Donahue, Nature Genetics 49 (2017) 358–366.
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| PubMed | Europe PMC
A. Makohon Moore, M. Zhang, J. Reiter, I. Božić, B. Allen, D. Kundu, K. Chatterjee, F. Wong, Y. Jiao, Z. Kohutek, J. Hong, M. Attiyeh, B. Javier, L. Wood, R. Hruban, M. Nowak, N. Papadopoulos, K. Kinzler, B. Vogelstein, C. Iacobuzio Donahue, Nature Genetics 49 (2017) 358–366.
2017 | Journal Article | IST-REx-ID: 1228 |

Are reprogrammed cells a useful tool for studying dopamine dysfunction in psychotic disorders? A review of the current evidence
U. Sauerzopf, R. Sacco, G. Novarino, M. Niello, A. Weidenauer, N. Praschak Rieder, H. Sitte, M. Willeit, European Journal of Neuroscience 45 (2017) 45–57.
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| PubMed | Europe PMC
U. Sauerzopf, R. Sacco, G. Novarino, M. Niello, A. Weidenauer, N. Praschak Rieder, H. Sitte, M. Willeit, European Journal of Neuroscience 45 (2017) 45–57.
2017 | Thesis | IST-REx-ID: 961 |

Cell adhesion and cell fate: An effective feedback loop during zebrafish gastrulation
V. Barone, Cell Adhesion and Cell Fate: An Effective Feedback Loop during Zebrafish Gastrulation, IST Austria, 2017.
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V. Barone, Cell Adhesion and Cell Fate: An Effective Feedback Loop during Zebrafish Gastrulation, IST Austria, 2017.
2017 | Journal Article | IST-REx-ID: 1026
Optogenetic methods in drug screening: Technologies and applications
V. Agus, H.L. Janovjak, Current Opinion in Biotechnology 48 (2017) 8–14.
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| DOI
V. Agus, H.L. Janovjak, Current Opinion in Biotechnology 48 (2017) 8–14.
2017 | Journal Article | IST-REx-ID: 1433 |

Phat - Persistent homology algorithms toolbox
U. Bauer, M. Kerber, J. Reininghaus, H. Wagner, Journal of Symbolic Computation 78 (2017) 76–90.
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U. Bauer, M. Kerber, J. Reininghaus, H. Wagner, Journal of Symbolic Computation 78 (2017) 76–90.
2017 | Journal Article | IST-REx-ID: 840 |

Fast hole tunneling times in germanium hut wires probed by single-shot reflectometry
L. Vukušić, J. Kukucka, H. Watzinger, G. Katsaros, Nano Letters 17 (2017) 5706–5710.
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L. Vukušić, J. Kukucka, H. Watzinger, G. Katsaros, Nano Letters 17 (2017) 5706–5710.
2017 | Conference Paper | IST-REx-ID: 552 |

Faster algorithms for mean-payoff parity games
K. Chatterjee, M.H. Henzinger, A. Svozil, in:, Leibniz International Proceedings in Informatics, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.
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K. Chatterjee, M.H. Henzinger, A. Svozil, in:, Leibniz International Proceedings in Informatics, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2017.
2017 | Conference Paper | IST-REx-ID: 6519 |

Improved set-based symbolic algorithms for parity games
K. Chatterjee, W. Dvorák, M.H. Henzinger, V. Loitzenbauer, in:, Schloss Dagstuhl -Leibniz-Zentrum fuer Informatik, 2017.
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K. Chatterjee, W. Dvorák, M.H. Henzinger, V. Loitzenbauer, in:, Schloss Dagstuhl -Leibniz-Zentrum fuer Informatik, 2017.
2017 | Journal Article | IST-REx-ID: 464 |

Improved algorithms for parity and Streett objectives
K. Chatterjee, M.H. Henzinger, V. Loitzenbauer, Logical Methods in Computer Science 13 (2017).
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| DOI
K. Chatterjee, M.H. Henzinger, V. Loitzenbauer, Logical Methods in Computer Science 13 (2017).
2017 | Research Data Reference | IST-REx-ID: 9707 |

Data from: Ret and Etv4 promote directed movements of progenitor cells during renal branching morphogenesis
P. Riccio, C. Cebrián, H. Zong, S. Hippenmeyer, F. Costantini, (2017).
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P. Riccio, C. Cebrián, H. Zong, S. Hippenmeyer, F. Costantini, (2017).
2017 | Research Data Reference | IST-REx-ID: 9709 |

Data from: Error-robust modes of the retinal population code
J. Prentice, O. Marre, M. Ioffe, A. Loback, G. Tkačik, M. Berry, (2017).
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J. Prentice, O. Marre, M. Ioffe, A. Loback, G. Tkačik, M. Berry, (2017).
2017 | Journal Article | IST-REx-ID: 1199 |

How does epistasis influence the response to selection?
N.H. Barton, Heredity 118 (2017) 96–109.
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N.H. Barton, Heredity 118 (2017) 96–109.
2017 | Research Data Reference | IST-REx-ID: 9842 |

Data for: Establishment in a new habitat by polygenic adaptation
A. Etheridge, N.H. Barton, (2017).
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A. Etheridge, N.H. Barton, (2017).
2017 | Journal Article | IST-REx-ID: 914 |

Ant queens increase their reproductive efforts after pathogen infection
J. Giehr, A.V. Grasse, S. Cremer, J. Heinze, A. Schrempf, Royal Society Open Science 4 (2017).
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J. Giehr, A.V. Grasse, S. Cremer, J. Heinze, A. Schrempf, Royal Society Open Science 4 (2017).
2017 | Journal Article | IST-REx-ID: 561 |

Effects of mutations in phage restriction sites during escape from restriction–modification
M. Pleska, C.C. Guet, Biology Letters 13 (2017).
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| PubMed | Europe PMC
M. Pleska, C.C. Guet, Biology Letters 13 (2017).
2017 | Research Data Reference | IST-REx-ID: 9859 |

Additional file 1: Table S1. of Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae
J. Greenwood, B. Milutinovic, R. Peuß, S. Behrens, D. Essar, P. Rosenstiel, H. Schulenburg, J. Kurtz, (2017).
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J. Greenwood, B. Milutinovic, R. Peuß, S. Behrens, D. Essar, P. Rosenstiel, H. Schulenburg, J. Kurtz, (2017).
2017 | Research Data Reference | IST-REx-ID: 9847 |

Supplementary materials and methods; Full data set from effects of mutations in phage restriction sites during escape from restriction–modification
M. Pleska, C.C. Guet, (2017).
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M. Pleska, C.C. Guet, (2017).
2017 | Research Data Reference | IST-REx-ID: 9853 |

Raw data from ant queens increase their reproductive efforts after pathogen infection
J. Giehr, A.V. Grasse, S. Cremer, J. Heinze, A. Schrempf, (2017).
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J. Giehr, A.V. Grasse, S. Cremer, J. Heinze, A. Schrempf, (2017).
2017 | Journal Article | IST-REx-ID: 1077 |

Evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family
R.A. Fernandes Redondo, H. de Vladar, T. Włodarski, J.P. Bollback, Journal of the Royal Society Interface 14 (2017).
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R.A. Fernandes Redondo, H. de Vladar, T. Włodarski, J.P. Bollback, Journal of the Royal Society Interface 14 (2017).
2017 | Journal Article | IST-REx-ID: 1006 |

Oral immune priming with Bacillus thuringiensis induces a shift in the gene expression of Tribolium castaneum larvae
J. Greenwood, B. Milutinovic, R. Peuß, S. Behrens, D. Essar, P. Rosenstiel, H. Schulenburg, J. Kurtz, BMC Genomics 18 (2017) 329.
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| DOI
J. Greenwood, B. Milutinovic, R. Peuß, S. Behrens, D. Essar, P. Rosenstiel, H. Schulenburg, J. Kurtz, BMC Genomics 18 (2017) 329.
2017 | Journal Article | IST-REx-ID: 1019
X-linkage is not a general inhibitor of tissue-specific gene expression in Drosophila melanogaster
E. Argyridou, A.K. Huylmans, A. Königer, J. Parsch, Heredity 119 (2017) 27–34.
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E. Argyridou, A.K. Huylmans, A. Königer, J. Parsch, Heredity 119 (2017) 27–34.
2017 | Research Data Reference | IST-REx-ID: 9861 |

Data from: X-linkage is not a general inhibitor of tissue-specific gene expression in Drosophila melanogaster
E. Argyridou, A.K. Huylmans, A. Königer, J. Parsch, (2017).
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E. Argyridou, A.K. Huylmans, A. Königer, J. Parsch, (2017).