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4158 Publications
2014 | Journal Article | IST-REx-ID: 2261 | 
Zhu F, Gamboa M, Farruggio A, Hippenmeyer S, Tasic B, Schüle B, Chen Tsai Y, Calos M. 2014. DICE, an efficient system for iterative genomic editing in human pluripotent stem cells. Nucleic Acids Research. 42(5), e34.
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2014 | Conference Paper | IST-REx-ID: 2275 |
Olsson C, Ulen J, Boykov Y, Kolmogorov V. 2014. Partial enumeration and curvature regularization. ICCV: International Conference on Computer Vision, 2936–2943.
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2014 | Journal Article | IST-REx-ID: 2285 |
Hosp J, Strüber M, Yanagawa Y, Obata K, Vida I, Jonas PM, Bartos M. 2014. Morpho-physiological criteria divide dentate gyrus interneurons into classes. Hippocampus. 23(2), 189–203.
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2014 | Journal Article | IST-REx-ID: 2699 |
Erdös L, Bourgade P, Yau H. 2014. Universality of general β-ensembles. Duke Mathematical Journal. 163(6), 1127–1190.
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2014 | Journal Article | IST-REx-ID: 2716 |
Chatterjee K, Randour M, Raskin J. 2014. Strategy synthesis for multi-dimensional quantitative objectives. Acta Informatica. 51(3–4), 129–163.
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| arXiv
2014 | Journal Article | IST-REx-ID: 2255 |
Edelsbrunner H, Pausinger F. 2014. Stable length estimates of tube-like shapes. Journal of Mathematical Imaging and Vision. 50(1), 164–177.
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2014 | Conference Paper | IST-REx-ID: 2905 |
Edelsbrunner H, Morozovy D. 2014. Persistent homology: Theory and practice. ECM: European Congress of Mathematics, 31–50.
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2014 | Journal Article | IST-REx-ID: 1733 |
Cerny P, Chmelik M, Henzinger TA, Radhakrishna A. 2014. Interface simulation distances. Theoretical Computer Science. 560(3), 348–363.
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2014 | Journal Article | IST-REx-ID: 2141 |
Chatterjee K, Henzinger MH. 2014. Efficient and dynamic algorithms for alternating Büchi games and maximal end-component decomposition. Journal of the ACM. 61(3), a15.
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2014 | Journal Article | IST-REx-ID: 3263 |
Tkačik G, Ghosh A, Schneidman E, Segev R. 2014. Adaptation to changes in higher-order stimulus statistics in the salamander retina. PLoS One. 9(1), e85841.
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2014 | Conference Paper | IST-REx-ID: 2054
Chatterjee K. 2014. Qualitative concurrent parity games: Bounded rationality. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). CONCUR: Concurrency Theory, LNCS, vol. 8704, 544–559.
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2014 | Thesis | IST-REx-ID: 1403
Behrndt M. 2014. Forces driving epithelial spreading in zebrafish epiboly. IST Austria.
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2014 | Journal Article | IST-REx-ID: 2084 |
Grusch M, Schelch K, Riedler R, Gschaider-Reichhart E, Differ C, Berger W, Inglés Prieto Á, Janovjak HL. 2014. Spatio-temporally precise activation of engineered receptor tyrosine kinases by light. EMBO Journal. 33(15), 1713–1726.
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2014 | Journal Article | IST-REx-ID: 2852
Fischlin M, Lehmann A, Pietrzak KZ. 2014. Robust multi-property combiners for hash functions. Journal of Cryptology. 27(3), 397–428.
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2014 | Conference Paper | IST-REx-ID: 2157 |
Matoušek J, Sedgwick E, Tancer M, Wagner U. 2014. Embeddability in the 3 sphere is decidable. Proceedings of the Annual Symposium on Computational Geometry. SoCG: Symposium on Computational Geometry, 78–84.
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2014 | Conference Paper | IST-REx-ID: 475 |
Aminof B, Rubin S. 2014. First cycle games. Electronic Proceedings in Theoretical Computer Science, EPTCS. SR: Strategic Reasoning, EPTCS, vol. 146, 83–90.
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2014 | Conference Paper | IST-REx-ID: 10892
Biedl T, Huber S, Palfrader P. 2014. Planar matchings for weighted straight skeletons. 25th International Symposium, ISAAC 2014. ISAAC: International Symposium on Algorithms and Computation, LNCS, vol. 8889, 117–127.
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2014 | Journal Article | IST-REx-ID: 535 |
Chatterjee K, Henzinger MH, Krinninger S, Nanongkai D. 2014. Polynomial-time algorithms for energy games with special weight structures. Algorithmica. 70(3), 457–492.
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| arXiv
2014 | Journal Article | IST-REx-ID: 537 |
Prizak R, Ezard T, Hoyle R. 2014. Fitness consequences of maternal and grandmaternal effects. Ecology and Evolution. 4(15), 3139–3145.
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2014 | Conference Paper | IST-REx-ID: 1903
Chatterjee K. 2014. Partial-observation stochastic reachability and parity games. MFCS: Mathematical Foundations of Computer Science, LNCS, vol. 8634, 1–4.
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2014 | Journal Article | IST-REx-ID: 2211 |
Chatterjee K, Doyen L. 2014. Partial-observation stochastic games: How to win when belief fails. ACM Transactions on Computational Logic (TOCL). 15(2), 16.
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| arXiv
2014 | Journal Article | IST-REx-ID: 2038 |
Boker U, Chatterjee K, Henzinger TA, Kupferman O. 2014. Temporal specifications with accumulative values. ACM Transactions on Computational Logic (TOCL). 15(4), 27.
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2014 | Conference Paper | IST-REx-ID: 2162 |
Chatterjee K, Ibsen-Jensen R. 2014. The complexity of ergodic mean payoff games. ICST: International Conference on Software Testing, Verification and Validation, LNCS, vol. 8573, 122–133.
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| arXiv
2014 | Conference Paper | IST-REx-ID: 2213 |
Chatterjee K, Doyen L, Nain S, Vardi M. 2014. The complexity of partial-observation stochastic parity games with finite-memory strategies. FoSSaCS: Foundations of Software Science and Computation Structures, LNCS, vol. 8412, 242–257.
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2014 | Conference Paper | IST-REx-ID: 2212
Chatterjee K, Doyen L, Gimbert H, Oualhadj Y. 2014. Perfect-information stochastic mean-payoff parity games. FoSSaCS: Foundations of Software Science and Computation Structures, LNCS, vol. 8412, 210–225.
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2014 | Conference Paper | IST-REx-ID: 2216 |
Chatterjee K, Ibsen-Jensen R, Majumdar R. 2014. Edit distance for timed automata. HSCC: Hybrid Systems - Computation and Control, 303–312.
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2014 | Conference Paper | IST-REx-ID: 2167 |
Daca P, Henzinger TA, Krenn W, Nickovic D. 2014. Compositional specifications for IOCO testing. IEEE 7th International Conference on Software Testing, Verification and Validation. ICST: International Conference on Software Testing, Verification and Validation, 6823899.
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| arXiv
2014 | Technical Report | IST-REx-ID: 5411 |
Daca P, Henzinger TA, Krenn W, Nickovic D. 2014. Compositional specifications for IOCO testing, IST Austria, 20p.
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2014 | Conference Paper | IST-REx-ID: 2063
Chatterjee K, Chmelik M, Daca P. 2014. CEGAR for qualitative analysis of probabilistic systems. CAV: Computer Aided Verification, LNCS, vol. 8559, 473–490.
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2014 | Technical Report | IST-REx-ID: 5413 |
Chatterjee K, Daca P, Chmelik M. 2014. CEGAR for qualitative analysis of probabilistic systems, IST Austria, 33p.
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2014 | Technical Report | IST-REx-ID: 5414 |
Chatterjee K, Daca P, Chmelik M. 2014. CEGAR for qualitative analysis of probabilistic systems, IST Austria, 33p.
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2014 | Technical Report | IST-REx-ID: 5412 |
Chatterjee K, Daca P, Chmelik M. 2014. CEGAR for qualitative analysis of probabilistic systems, IST Austria, 31p.
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2014 | Conference Paper | IST-REx-ID: 2163 |
Chatterjee K, Doyen L. 2014. Games with a weak adversary. Lecture Notes in Computer Science. ICALP: Automata, Languages and Programming, LNCS, vol. 8573, 110–121.
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| arXiv
2014 | Technical Report | IST-REx-ID: 5419 |
Chatterjee K, Ibsen-Jensen R, Pavlogiannis A. 2014. Improved algorithms for reachability and shortest path on low tree-width graphs, IST Austria, 34p.
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2014 | Conference Paper | IST-REx-ID: 2217
Henzinger TA, Otop J. 2014. Model measuring for hybrid systems. Proceedings of the 17th international conference on Hybrid systems: computation and control. HSCC: Hybrid Systems - Computation and Control, 213–222.
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2014 | Technical Report | IST-REx-ID: 5417 |
Henzinger TA, Otop J. 2014. From model checking to model measuring, IST Austria, 14p.
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2014 | Technical Report | IST-REx-ID: 5416 |
Henzinger TA, Otop J. 2014. Model measuring for hybrid systems, IST Austria, 22p.
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2014 | Technical Report | IST-REx-ID: 5418 |
Chatterjee K, Doyen L. 2014. Games with a weak adversary, IST Austria, 18p.
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2014 | Technical Report | IST-REx-ID: 5420 |
Chatterjee K, Ibsen-Jensen R. 2014. The value 1 problem for concurrent mean-payoff games, IST Austria, 49p.
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2014 | Technical Report | IST-REx-ID: 5424 |
Chatterjee K, Chmelik M, Gupta R, Kanodia A. 2014. Qualitative analysis of POMDPs with temporal logic specifications for robotics applications, IST Austria, 12p.
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2014 | Technical Report | IST-REx-ID: 5426 |
Chatterjee K, Chmelik M, Gupta R, Kanodia A. 2014. Qualitative analysis of POMDPs with temporal logic specifications for robotics applications, IST Austria, 10p.
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2014 | Technical Report | IST-REx-ID: 5423 |
Chatterjee K, Kössler A, Pavlogiannis A, Schmid U. 2014. A framework for automated competitive analysis of on-line scheduling of firm-deadline tasks, IST Austria, 14p.
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2014 | Technical Report | IST-REx-ID: 5427 |
Chatterjee K, Ibsen-Jensen R, Pavlogiannis A. 2014. Optimal tree-decomposition balancing and reachability on low treewidth graphs, IST Austria, 24p.
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2014 | Technical Report | IST-REx-ID: 5428 |
Chatterjee K, Henzinger TA, Otop J, Velner Y. 2014. Quantitative fair simulation games, IST Austria, 26p.
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2014 | Technical Report | IST-REx-ID: 5415 |
Chatterjee K, Henzinger TA, Otop J. 2014. Nested weighted automata, IST Austria, 27p.
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2014 | Technical Report | IST-REx-ID: 5421 |
Chatterjee K, Ibsen-Jensen R, Nowak M. 2014. The complexity of evolution on graphs, IST Austria, 27p.
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2014 | Journal Article | IST-REx-ID: 2257 |
Tkačik G, Marre O, Amodei D, Schneidman E, Bialek W, Berry M. 2014. Searching for collective behavior in a large network of sensory neurons. PLoS Computational Biology. 10(1), e1003408.
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2014 | Book Chapter | IST-REx-ID: 6178
Smutny M, Behrndt M, Campinho P, Ruprecht V, Heisenberg C-PJ. 2014.UV laser ablation to measure cell and tissue-generated forces in the zebrafish embryo in vivo and ex vivo. In: Tissue Morphogenesis. vol. 1189, 219–235.
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| PubMed | Europe PMC
2014 | Conference Paper | IST-REx-ID: 10885
Chatterjee K, Doyen L, Filiot E, Raskin J-F. 2014. Doomsday equilibria for omega-regular games. VMCAI 2014: Verification, Model Checking, and Abstract Interpretation. VMCAI: Verifcation, Model Checking, and Abstract Interpretation, LNCS, vol. 8318, 78–97.
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| arXiv
2014 | Book | IST-REx-ID: 6853
Edelsbrunner H. 2014. A Short Course in Computational Geometry and Topology 1st ed., Cham: Springer Nature, IX, 110p.
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2014 | Working Paper | IST-REx-ID: 7038 |
Huszár K, Rolinek M. Playful Math - An introduction to mathematical games, IST Austria, 5p.
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2014 | Conference Paper | IST-REx-ID: 8044 |
Seiringer R. 2014. Structure of the excitation spectrum for many-body quantum systems. Proceeding of the International Congress of Mathematicans. ICM: International Congress of Mathematicans vol. 3, 1175–1194.
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2014 | Journal Article | IST-REx-ID: 2001
Mitosch K, Bollenbach MT. 2014. Bacterial responses to antibiotics and their combinations. Environmental Microbiology Reports. 6(6), 545–557.
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2014 | Conference Paper | IST-REx-ID: 2082 |
Gazi P, Pietrzak KZ, Rybar M. 2014. The exact PRF-security of NMAC and HMAC. CRYPTO: International Cryptology Conference, LNCS, vol. 8616, 113–130.
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2014 | Journal Article | IST-REx-ID: 9519
Kim MY, Zilberman D. 2014. DNA methylation as a system of plant genomic immunity. Trends in Plant Science. 19(5), 320–326.
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| PubMed | Europe PMC
2014 | Journal Article | IST-REx-ID: 1912 |
Compagnon J, Barone V, Rajshekar S, Kottmeier R, Pranjic-Ferscha K, Behrndt M, Heisenberg C-PJ. 2014. The notochord breaks bilateral symmetry by controlling cell shapes in the Zebrafish laterality organ. Developmental Cell. 31(6), 774–783.
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| PubMed | Europe PMC
2014 | Journal Article | IST-REx-ID: 2083 |
Lagator M, Morgan A, Neve P, Colegrave N. 2014. Role of sex and migration in adaptation to sink environments. Evolution. 68(8), 2296–2305.
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2014 | Research Data Reference | IST-REx-ID: 9747 |
Lagator M, Morgan A, Neve P, Colegrave N. 2014. Data from: Role of sex and migration in adaptation to sink environments, Dryad, 10.5061/dryad.s42n1.
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2014 | Journal Article | IST-REx-ID: 2086 |
Wolf S, Mcmahon D, Lim K, Pull C, Clark S, Paxton R, Osborne J. 2014. So near and yet so far: Harmonic radar reveals reduced homing ability of Nosema infected honeybees. PLoS One. 9(8), e103989.
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2014 | Research Data Reference | IST-REx-ID: 9888
Wolf S, Mcmahon D, Lim K, Pull C, Clark S, Paxton R, Osborne J. 2014. Supporting information, Public Library of Science, 10.1371/journal.pone.0103989.s003.
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2014 | Journal Article | IST-REx-ID: 9458 |
Huff JT, Zilberman D. 2014. Dnmt1-independent CG methylation contributes to nucleosome positioning in diverse eukaryotes. Cell. 156(6), 1286–1297.
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| PubMed | Europe PMC
2014 | Journal Article | IST-REx-ID: 9479 |
Mérai Z, Chumak N, García-Aguilar M, Hsieh T-F, Nishimura T, Schoft VK, Bindics J, Ślusarz L, Arnoux S, Opravil S, Mechtler K, Zilberman D, Fischer RL, Tamaru H. 2014. The AAA-ATPase molecular chaperone Cdc48/p97 disassembles sumoylated centromeres, decondenses heterochromatin, and activates ribosomal RNA genes. Proceedings of the National Academy of Sciences. 111(45), 16166–16171.
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| PubMed | Europe PMC
2014 | Journal Article | IST-REx-ID: 2004 |
Lovrics A, Gao Y, Juhász B, Bock I, Byrne H, Dinnyés A, Kovács K. 2014. Boolean modelling reveals new regulatory connections between transcription factors orchestrating the development of the ventral spinal cord. PLoS One. 9(11), e111430.
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2014 | Research Data Reference | IST-REx-ID: 9722
Lovrics A, Gao Y, Juhász B, Bock I, Byrne HM, Dinnyés A, Kovács K. 2014. Transition probability between TF expression states when Dbx2 inhibits Nkx2.2, Public Library of Science, 10.1371/journal.pone.0111430.s006.
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2014 | Journal Article | IST-REx-ID: 2039 |
Chatterjee K, Pavlogiannis A, Adlam B, Nowak M. 2014. The time scale of evolutionary innovation. PLoS Computational Biology. 10(9), 7p.
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2014 | Journal Article | IST-REx-ID: 2161
Westhus C, Ugelvig LV, Tourdot E, Heinze J, Doums C, Cremer S. 2014. Increased grooming after repeated brood care provides sanitary benefits in a clonal ant. Behavioral Ecology and Sociobiology. 68(10), 1701–1710.
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2014 | Journal Article | IST-REx-ID: 2036 |
Lagator M, Colegrave N, Neve P. 2014. Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses. Proceedings of the Royal Society of London Series B Biological Sciences. 281(1794), 20141679.
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2014 | Research Data Reference | IST-REx-ID: 9740 |
Konrad M, Grasse AV, Tragust S, Cremer S. 2014. Data from: Anti-pathogen protection versus survival costs mediated by an ectosymbiont in an ant host, Dryad, 10.5061/dryad.vm0vc.
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2014 | Research Data Reference | IST-REx-ID: 9741 |
Lagator M, Colegrave N, Neve P. 2014. Data from: Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses, Dryad, 10.5061/dryad.85dn7.
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2014 | Research Data Reference | IST-REx-ID: 9739
Chatterjee K, Pavlogiannis A, Adlam B, Novak M. 2014. Detailed proofs for “The time scale of evolutionary innovation”, Public Library of Science, 10.1371/journal.pcbi.1003818.s001.
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2014 | Journal Article | IST-REx-ID: 2170 |
Hearn J, Stone G, Bunnefeld L, Nicholls J, Barton NH, Lohse K. 2014. Likelihood-based inference of population history from low-coverage de novo genome assemblies. Molecular Ecology. 23(1), 198–211.
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2014 | Research Data Reference | IST-REx-ID: 9753 |
Tragust S, Ugelvig LV, Chapuisat M, Heinze J, Cremer S. 2014. Data from: Pupal cocoons affect sanitary brood care and limit fungal infections in ant colonies, Dryad, 10.5061/dryad.nc0gc.
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2014 | Research Data Reference | IST-REx-ID: 9752 |
Simmons K, Prentice J, Tkačik G, Homann J, Yee H, Palmer S, Nelson P, Balasubramanian V. 2014. Data from: Transformation of stimulus correlations by the retina, Dryad, 10.5061/dryad.246qg.
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2014 | Journal Article | IST-REx-ID: 9931
Dhar R, Bergmiller T, Wagner A. 2014. Increased gene dosage plays a predominant role in the initial stages of evolution of duplicate TEM-1 beta lactamase genes. Evolution. 68(6), 1775–1791.
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| PubMed | Europe PMC
2014 | Research Data Reference | IST-REx-ID: 9932 |
Dhar R, Bergmiller T, Wagner A. 2014. Data from: Increased gene dosage plays a predominant role in the initial stages of evolution of duplicate TEM-1 beta lactamase genes, Dryad, 10.5061/dryad.jc402.
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2014 | Journal Article | IST-REx-ID: 1999
Stroeymeyt N, Casillas Perez BE, Cremer S. 2014. Organisational immunity in social insects. Current Opinion in Insect Science. 5(1), 1–15.
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2013 | Journal Article | IST-REx-ID: 10396 |
Schlögl A, Jonas PM, Schmidt-Hieber C, Guzman SJ. 2013. Stimfit: A fast visualization and analysis environment for cellular neurophysiology. Biomedical Engineering / Biomedizinische Technik. 58(SI-1-Track-G), 000010151520134181.
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| PubMed | Europe PMC
2013 | Journal Article | IST-REx-ID: 10895 |
Vanneste S, Friml J. 2013. Calcium: The missing link in auxin action. Plants. 2(4), 650–675.
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| PubMed | Europe PMC
2013 | Conference Paper | IST-REx-ID: 10902
Chatterjee K, Chaubal S, Rubin S. 2013. How to travel between languages. 7th International Conference on Language and Automata Theory and Applications. LATA: Conference on Language and Automata Theory and ApplicationsLNCS, LNCS, vol. 7810, 214–225.
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2013 | Book Chapter | IST-REx-ID: 10900
Weber M, Sixt MK. 2013.Live Cell Imaging of Chemotactic Dendritic Cell Migration in Explanted Mouse Ear Preparations. In: Chemokines. Methods in Molecular Biology, vol. 1013, 215–226.
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| PubMed | Europe PMC
2013 | Conference Paper | IST-REx-ID: 10898
Haas A, Lippautz M, Henzinger TA, Payer H, Sokolova A, Kirsch CM, Sezgin A. 2013. Distributed queues in shared memory: Multicore performance and scalability through quantitative relaxation. Proceedings of the ACM International Conference on Computing Frontiers - CF ’13. CF: Conference on Computing Frontiers, 17.
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2013 | Conference Paper | IST-REx-ID: 1374 |
Chatterjee K, Fijalkow N. 2013. Infinite-state games with finitary conditions. 22nd EACSL Annual Conference on Computer Science Logic. CSL: Computer Science LogicLeibniz International Proceedings in Informatics, LIPIcs, vol. 23, 181–196.
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2013 | Conference Paper | IST-REx-ID: 1385 |
Hofferek G, Gupta A, Könighofer B, Jiang J, Bloem R. 2013. Synthesizing multiple boolean functions using interpolation on a single proof. 2013 Formal Methods in Computer-Aided Design. FMCAD: Formal Methods in Computer-Aided Design, 77–84.
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| arXiv
2013 | Conference Paper | IST-REx-ID: 1387 |
Boker U, Kuperberg D, Kupferman O, Skrzypczak M. 2013. Nondeterminism in the presence of a diverse or unknown future. 7966(PART 2), 89–100.
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2013 | Thesis | IST-REx-ID: 1406
Campinho P. 2013. Mechanics of zebrafish epiboly: Tension-oriented cell divisions limit anisotropic tissue tension in epithelial spreading. IST Austria.
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2013 | Journal Article | IST-REx-ID: 2010 |
Uhler C, Raskutti G, Bühlmann P, Yu B. 2013. Geometry of the faithfulness assumption in causal inference. The Annals of Statistics. 41(2), 436–463.
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| arXiv
2013 | Journal Article | IST-REx-ID: 2009 |
Uhler C, Slavkovic A, Fienberg S. 2013. Privacy-preserving data sharing for genome-wide association studies. Journal of Privacy and Confidentiality . 5(1), 137–166.
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2013 | Conference Paper | IST-REx-ID: 2181 |
Henzinger TA, Kirsch C, Payer H, Sezgin A, Sokolova A. 2013. Quantitative relaxation of concurrent data structures. Proceedings of the 40th annual ACM SIGPLAN-SIGACT symposium on Principles of programming language. POPL: Principles of Programming Languages, 317–328.
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2013 | Conference Paper | IST-REx-ID: 2209
Biedl T, Held M, Huber S. 2013. Recognizing straight skeletons and Voronoi diagrams and reconstructing their input. ISVD: Voronoi Diagrams in Science and Engineering, 2013 10th International Symposium on Voronoi Diagrams in Science and Engineering (ISVD 2013) , , 37–46.
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2013 | Conference Paper | IST-REx-ID: 2210 |
Biedl T, Held M, Huber S. 2013. Reconstructing polygons from embedded straight skeletons. 29th European Workshop on Computational Geometry. EuroCG: European Workshop on Computational Geometry, 95–98.
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2013 | Conference Paper | IST-REx-ID: 2237 |
Blanc R, Gupta A, Kovács L, Kragl B. 2013. Tree interpolation in Vampire. 8312, 173–181.
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2013 | Conference Paper | IST-REx-ID: 2243 |
Michaliszyn J, Otop J. 2013. Elementary modal logics over transitive structures. 23, 563–577.
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2013 | Conference Paper | IST-REx-ID: 2244 |
Matoušek J, Sedgwick E, Tancer M, Wagner U. 2013. Untangling two systems of noncrossing curves. 8242, 472–483.
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| arXiv
2013 | Conference Paper | IST-REx-ID: 2259 |
Alwen JF, Krenn S, Pietrzak KZ, Wichs D. 2013. Learning with rounding, revisited: New reduction properties and applications. 8042(1), 57–74.
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2013 | Conference Paper | IST-REx-ID: 2258 |
Kiltz E, Pietrzak KZ, Szegedy M. 2013. Digital signatures with minimal overhead from indifferentiable random invertible functions. 8042, 571–588.
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