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4151 Publications
2014 | Conference Paper | IST-REx-ID: 2905 |

Persistent homology: Theory and practice
H. Edelsbrunner, D. Morozovy, in:, European Mathematical Society Publishing House, 2014, pp. 31–50.
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H. Edelsbrunner, D. Morozovy, in:, European Mathematical Society Publishing House, 2014, pp. 31–50.
2014 | Journal Article | IST-REx-ID: 1733 |

Interface simulation distances
P. Cerny, M. Chmelik, T.A. Henzinger, A. Radhakrishna, Theoretical Computer Science 560 (2014) 348–363.
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P. Cerny, M. Chmelik, T.A. Henzinger, A. Radhakrishna, Theoretical Computer Science 560 (2014) 348–363.
2014 | Journal Article | IST-REx-ID: 2141 |

Efficient and dynamic algorithms for alternating Büchi games and maximal end-component decomposition
K. Chatterjee, M.H. Henzinger, Journal of the ACM 61 (2014).
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K. Chatterjee, M.H. Henzinger, Journal of the ACM 61 (2014).
2014 | Journal Article | IST-REx-ID: 3263 |

Adaptation to changes in higher-order stimulus statistics in the salamander retina
G. Tkačik, A. Ghosh, E. Schneidman, R. Segev, PLoS One 9 (2014).
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G. Tkačik, A. Ghosh, E. Schneidman, R. Segev, PLoS One 9 (2014).
2014 | Conference Paper | IST-REx-ID: 2054
Qualitative concurrent parity games: Bounded rationality
K. Chatterjee, in:, P. Baldan, D. Gorla (Eds.), Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2014, pp. 544–559.
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K. Chatterjee, in:, P. Baldan, D. Gorla (Eds.), Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2014, pp. 544–559.
2014 | Thesis | IST-REx-ID: 1403
Forces driving epithelial spreading in zebrafish epiboly
M. Behrndt, Forces Driving Epithelial Spreading in Zebrafish Epiboly, IST Austria, 2014.
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M. Behrndt, Forces Driving Epithelial Spreading in Zebrafish Epiboly, IST Austria, 2014.
2014 | Journal Article | IST-REx-ID: 2084 |

Spatio-temporally precise activation of engineered receptor tyrosine kinases by light
M. Grusch, K. Schelch, R. Riedler, E. Gschaider-Reichhart, C. Differ, W. Berger, Á. Inglés Prieto, H.L. Janovjak, EMBO Journal 33 (2014) 1713–1726.
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M. Grusch, K. Schelch, R. Riedler, E. Gschaider-Reichhart, C. Differ, W. Berger, Á. Inglés Prieto, H.L. Janovjak, EMBO Journal 33 (2014) 1713–1726.
2014 | Journal Article | IST-REx-ID: 2852
Robust multi-property combiners for hash functions
M. Fischlin, A. Lehmann, K.Z. Pietrzak, Journal of Cryptology 27 (2014) 397–428.
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M. Fischlin, A. Lehmann, K.Z. Pietrzak, Journal of Cryptology 27 (2014) 397–428.
2014 | Conference Paper | IST-REx-ID: 2157 |

Embeddability in the 3 sphere is decidable
J. Matoušek, E. Sedgwick, M. Tancer, U. Wagner, in:, Proceedings of the Annual Symposium on Computational Geometry, ACM, 2014, pp. 78–84.
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J. Matoušek, E. Sedgwick, M. Tancer, U. Wagner, in:, Proceedings of the Annual Symposium on Computational Geometry, ACM, 2014, pp. 78–84.
2014 | Conference Paper | IST-REx-ID: 475 |

First cycle games
B. Aminof, S. Rubin, in:, Electronic Proceedings in Theoretical Computer Science, EPTCS, Open Publishing Association, 2014, pp. 83–90.
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B. Aminof, S. Rubin, in:, Electronic Proceedings in Theoretical Computer Science, EPTCS, Open Publishing Association, 2014, pp. 83–90.
2014 | Conference Paper | IST-REx-ID: 10892
Planar matchings for weighted straight skeletons
T. Biedl, S. Huber, P. Palfrader, in:, 25th International Symposium, ISAAC 2014, Springer Nature, 2014, pp. 117–127.
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T. Biedl, S. Huber, P. Palfrader, in:, 25th International Symposium, ISAAC 2014, Springer Nature, 2014, pp. 117–127.
2014 | Journal Article | IST-REx-ID: 535 |

Polynomial-time algorithms for energy games with special weight structures
K. Chatterjee, M.H. Henzinger, S. Krinninger, D. Nanongkai, Algorithmica 70 (2014) 457–492.
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K. Chatterjee, M.H. Henzinger, S. Krinninger, D. Nanongkai, Algorithmica 70 (2014) 457–492.
2014 | Journal Article | IST-REx-ID: 537 |

Fitness consequences of maternal and grandmaternal effects
R. Prizak, T. Ezard, R. Hoyle, Ecology and Evolution 4 (2014) 3139–3145.
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R. Prizak, T. Ezard, R. Hoyle, Ecology and Evolution 4 (2014) 3139–3145.
2014 | Conference Paper | IST-REx-ID: 1903
Partial-observation stochastic reachability and parity games
K. Chatterjee, in:, Springer, 2014, pp. 1–4.
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K. Chatterjee, in:, Springer, 2014, pp. 1–4.
2014 | Journal Article | IST-REx-ID: 2211 |

Partial-observation stochastic games: How to win when belief fails
K. Chatterjee, L. Doyen, ACM Transactions on Computational Logic (TOCL) 15 (2014).
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K. Chatterjee, L. Doyen, ACM Transactions on Computational Logic (TOCL) 15 (2014).
2014 | Journal Article | IST-REx-ID: 2038 |

Temporal specifications with accumulative values
U. Boker, K. Chatterjee, T.A. Henzinger, O. Kupferman, ACM Transactions on Computational Logic (TOCL) 15 (2014).
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U. Boker, K. Chatterjee, T.A. Henzinger, O. Kupferman, ACM Transactions on Computational Logic (TOCL) 15 (2014).
2014 | Conference Paper | IST-REx-ID: 2162 |

The complexity of ergodic mean payoff games
K. Chatterjee, R. Ibsen-Jensen, in:, Springer, 2014, pp. 122–133.
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K. Chatterjee, R. Ibsen-Jensen, in:, Springer, 2014, pp. 122–133.
2014 | Conference Paper | IST-REx-ID: 2213 |

The complexity of partial-observation stochastic parity games with finite-memory strategies
K. Chatterjee, L. Doyen, S. Nain, M. Vardi, in:, Springer, 2014, pp. 242–257.
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K. Chatterjee, L. Doyen, S. Nain, M. Vardi, in:, Springer, 2014, pp. 242–257.
2014 | Conference Paper | IST-REx-ID: 2212
Perfect-information stochastic mean-payoff parity games
K. Chatterjee, L. Doyen, H. Gimbert, Y. Oualhadj, in:, Springer, 2014, pp. 210–225.
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K. Chatterjee, L. Doyen, H. Gimbert, Y. Oualhadj, in:, Springer, 2014, pp. 210–225.
2014 | Conference Paper | IST-REx-ID: 2216 |

Edit distance for timed automata
K. Chatterjee, R. Ibsen-Jensen, R. Majumdar, in:, Springer, 2014, pp. 303–312.
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K. Chatterjee, R. Ibsen-Jensen, R. Majumdar, in:, Springer, 2014, pp. 303–312.
2014 | Conference Paper | IST-REx-ID: 2167 |

Compositional specifications for IOCO testing
P. Daca, T.A. Henzinger, W. Krenn, D. Nickovic, in:, IEEE 7th International Conference on Software Testing, Verification and Validation, IEEE, 2014.
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P. Daca, T.A. Henzinger, W. Krenn, D. Nickovic, in:, IEEE 7th International Conference on Software Testing, Verification and Validation, IEEE, 2014.
2014 | Technical Report | IST-REx-ID: 5411 |

Compositional specifications for IOCO testing
P. Daca, T.A. Henzinger, W. Krenn, D. Nickovic, Compositional Specifications for IOCO Testing, IST Austria, 2014.
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P. Daca, T.A. Henzinger, W. Krenn, D. Nickovic, Compositional Specifications for IOCO Testing, IST Austria, 2014.
2014 | Conference Paper | IST-REx-ID: 2063
CEGAR for qualitative analysis of probabilistic systems
K. Chatterjee, M. Chmelik, P. Daca, in:, Springer, 2014, pp. 473–490.
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K. Chatterjee, M. Chmelik, P. Daca, in:, Springer, 2014, pp. 473–490.
2014 | Technical Report | IST-REx-ID: 5413 |

CEGAR for qualitative analysis of probabilistic systems
K. Chatterjee, P. Daca, M. Chmelik, CEGAR for Qualitative Analysis of Probabilistic Systems, IST Austria, 2014.
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K. Chatterjee, P. Daca, M. Chmelik, CEGAR for Qualitative Analysis of Probabilistic Systems, IST Austria, 2014.
2014 | Technical Report | IST-REx-ID: 5414 |

CEGAR for qualitative analysis of probabilistic systems
K. Chatterjee, P. Daca, M. Chmelik, CEGAR for Qualitative Analysis of Probabilistic Systems, IST Austria, 2014.
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K. Chatterjee, P. Daca, M. Chmelik, CEGAR for Qualitative Analysis of Probabilistic Systems, IST Austria, 2014.
2014 | Technical Report | IST-REx-ID: 5412 |

CEGAR for qualitative analysis of probabilistic systems
K. Chatterjee, P. Daca, M. Chmelik, CEGAR for Qualitative Analysis of Probabilistic Systems, IST Austria, 2014.
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K. Chatterjee, P. Daca, M. Chmelik, CEGAR for Qualitative Analysis of Probabilistic Systems, IST Austria, 2014.
2014 | Conference Paper | IST-REx-ID: 2163 |

Games with a weak adversary
K. Chatterjee, L. Doyen, in:, Lecture Notes in Computer Science, Springer, 2014, pp. 110–121.
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K. Chatterjee, L. Doyen, in:, Lecture Notes in Computer Science, Springer, 2014, pp. 110–121.
2014 | Technical Report | IST-REx-ID: 5419 |

Improved algorithms for reachability and shortest path on low tree-width graphs
K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, Improved Algorithms for Reachability and Shortest Path on Low Tree-Width Graphs, IST Austria, 2014.
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K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, Improved Algorithms for Reachability and Shortest Path on Low Tree-Width Graphs, IST Austria, 2014.
2014 | Conference Paper | IST-REx-ID: 2217
Model measuring for hybrid systems
T.A. Henzinger, J. Otop, in:, Proceedings of the 17th International Conference on Hybrid Systems: Computation and Control, Springer, 2014, pp. 213–222.
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T.A. Henzinger, J. Otop, in:, Proceedings of the 17th International Conference on Hybrid Systems: Computation and Control, Springer, 2014, pp. 213–222.
2014 | Technical Report | IST-REx-ID: 5417 |

From model checking to model measuring
T.A. Henzinger, J. Otop, From Model Checking to Model Measuring, IST Austria, 2014.
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T.A. Henzinger, J. Otop, From Model Checking to Model Measuring, IST Austria, 2014.
2014 | Technical Report | IST-REx-ID: 5416 |

Model measuring for hybrid systems
T.A. Henzinger, J. Otop, Model Measuring for Hybrid Systems, IST Austria, 2014.
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T.A. Henzinger, J. Otop, Model Measuring for Hybrid Systems, IST Austria, 2014.
2014 | Technical Report | IST-REx-ID: 5418 |

Games with a weak adversary
K. Chatterjee, L. Doyen, Games with a Weak Adversary, IST Austria, 2014.
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K. Chatterjee, L. Doyen, Games with a Weak Adversary, IST Austria, 2014.
2014 | Technical Report | IST-REx-ID: 5420 |

The value 1 problem for concurrent mean-payoff games
K. Chatterjee, R. Ibsen-Jensen, The Value 1 Problem for Concurrent Mean-Payoff Games, IST Austria, 2014.
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K. Chatterjee, R. Ibsen-Jensen, The Value 1 Problem for Concurrent Mean-Payoff Games, IST Austria, 2014.
2014 | Technical Report | IST-REx-ID: 5424 |

Qualitative analysis of POMDPs with temporal logic specifications for robotics applications
K. Chatterjee, M. Chmelik, R. Gupta, A. Kanodia, Qualitative Analysis of POMDPs with Temporal Logic Specifications for Robotics Applications, IST Austria, 2014.
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K. Chatterjee, M. Chmelik, R. Gupta, A. Kanodia, Qualitative Analysis of POMDPs with Temporal Logic Specifications for Robotics Applications, IST Austria, 2014.
2014 | Technical Report | IST-REx-ID: 5426 |

Qualitative analysis of POMDPs with temporal logic specifications for robotics applications
K. Chatterjee, M. Chmelik, R. Gupta, A. Kanodia, Qualitative Analysis of POMDPs with Temporal Logic Specifications for Robotics Applications, IST Austria, 2014.
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K. Chatterjee, M. Chmelik, R. Gupta, A. Kanodia, Qualitative Analysis of POMDPs with Temporal Logic Specifications for Robotics Applications, IST Austria, 2014.
2014 | Technical Report | IST-REx-ID: 5423 |

A framework for automated competitive analysis of on-line scheduling of firm-deadline tasks
K. Chatterjee, A. Kössler, A. Pavlogiannis, U. Schmid, A Framework for Automated Competitive Analysis of On-Line Scheduling of Firm-Deadline Tasks, IST Austria, 2014.
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K. Chatterjee, A. Kössler, A. Pavlogiannis, U. Schmid, A Framework for Automated Competitive Analysis of On-Line Scheduling of Firm-Deadline Tasks, IST Austria, 2014.
2014 | Technical Report | IST-REx-ID: 5427 |

Optimal tree-decomposition balancing and reachability on low treewidth graphs
K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, Optimal Tree-Decomposition Balancing and Reachability on Low Treewidth Graphs, IST Austria, 2014.
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K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, Optimal Tree-Decomposition Balancing and Reachability on Low Treewidth Graphs, IST Austria, 2014.
2014 | Technical Report | IST-REx-ID: 5428 |

Quantitative fair simulation games
K. Chatterjee, T.A. Henzinger, J. Otop, Y. Velner, Quantitative Fair Simulation Games, IST Austria, 2014.
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K. Chatterjee, T.A. Henzinger, J. Otop, Y. Velner, Quantitative Fair Simulation Games, IST Austria, 2014.
2014 | Technical Report | IST-REx-ID: 5415 |

Nested weighted automata
K. Chatterjee, T.A. Henzinger, J. Otop, Nested Weighted Automata, IST Austria, 2014.
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K. Chatterjee, T.A. Henzinger, J. Otop, Nested Weighted Automata, IST Austria, 2014.
2014 | Technical Report | IST-REx-ID: 5421 |

The complexity of evolution on graphs
K. Chatterjee, R. Ibsen-Jensen, M. Nowak, The Complexity of Evolution on Graphs, IST Austria, 2014.
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K. Chatterjee, R. Ibsen-Jensen, M. Nowak, The Complexity of Evolution on Graphs, IST Austria, 2014.
2014 | Journal Article | IST-REx-ID: 2257 |

Searching for collective behavior in a large network of sensory neurons
G. Tkačik, O. Marre, D. Amodei, E. Schneidman, W. Bialek, M. Berry, PLoS Computational Biology 10 (2014).
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G. Tkačik, O. Marre, D. Amodei, E. Schneidman, W. Bialek, M. Berry, PLoS Computational Biology 10 (2014).
2014 | Book Chapter | IST-REx-ID: 6178
UV laser ablation to measure cell and tissue-generated forces in the zebrafish embryo in vivo and ex vivo
M. Smutny, M. Behrndt, P. Campinho, V. Ruprecht, C.-P.J. Heisenberg, in:, C. Nelson (Ed.), Tissue Morphogenesis, Springer, New York, NY, 2014, pp. 219–235.
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| DOI
| PubMed | Europe PMC
M. Smutny, M. Behrndt, P. Campinho, V. Ruprecht, C.-P.J. Heisenberg, in:, C. Nelson (Ed.), Tissue Morphogenesis, Springer, New York, NY, 2014, pp. 219–235.
2014 | Conference Paper | IST-REx-ID: 10885
Doomsday equilibria for omega-regular games
K. Chatterjee, L. Doyen, E. Filiot, J.-F. Raskin, in:, VMCAI 2014: Verification, Model Checking, and Abstract Interpretation, Springer Nature, 2014, pp. 78–97.
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| arXiv
K. Chatterjee, L. Doyen, E. Filiot, J.-F. Raskin, in:, VMCAI 2014: Verification, Model Checking, and Abstract Interpretation, Springer Nature, 2014, pp. 78–97.
2014 | Book | IST-REx-ID: 6853
A Short Course in Computational Geometry and Topology
H. Edelsbrunner, A Short Course in Computational Geometry and Topology, 1st ed., Springer Nature, Cham, 2014.
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H. Edelsbrunner, A Short Course in Computational Geometry and Topology, 1st ed., Springer Nature, Cham, 2014.
2014 | Working Paper | IST-REx-ID: 7038 |

Playful Math - An introduction to mathematical games
K. Huszár, M. Rolinek, Playful Math - An Introduction to Mathematical Games, IST Austria, n.d.
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K. Huszár, M. Rolinek, Playful Math - An Introduction to Mathematical Games, IST Austria, n.d.
2014 | Conference Paper | IST-REx-ID: 8044 |

Structure of the excitation spectrum for many-body quantum systems
R. Seiringer, in:, Proceeding of the International Congress of Mathematicans, Kyung Moon SA, 2014, pp. 1175–1194.
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R. Seiringer, in:, Proceeding of the International Congress of Mathematicans, Kyung Moon SA, 2014, pp. 1175–1194.
2014 | Journal Article | IST-REx-ID: 2001
Bacterial responses to antibiotics and their combinations
K. Mitosch, M.T. Bollenbach, Environmental Microbiology Reports 6 (2014) 545–557.
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K. Mitosch, M.T. Bollenbach, Environmental Microbiology Reports 6 (2014) 545–557.
2014 | Conference Paper | IST-REx-ID: 2082 |

The exact PRF-security of NMAC and HMAC
P. Gazi, K.Z. Pietrzak, M. Rybar, in:, J. Garay, R. Gennaro (Eds.), Springer, 2014, pp. 113–130.
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P. Gazi, K.Z. Pietrzak, M. Rybar, in:, J. Garay, R. Gennaro (Eds.), Springer, 2014, pp. 113–130.
2014 | Journal Article | IST-REx-ID: 9519
DNA methylation as a system of plant genomic immunity
M.Y. Kim, D. Zilberman, Trends in Plant Science 19 (2014) 320–326.
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| DOI
| PubMed | Europe PMC
M.Y. Kim, D. Zilberman, Trends in Plant Science 19 (2014) 320–326.
2014 | Journal Article | IST-REx-ID: 1912 |

The notochord breaks bilateral symmetry by controlling cell shapes in the Zebrafish laterality organ
J. Compagnon, V. Barone, S. Rajshekar, R. Kottmeier, K. Pranjic-Ferscha, M. Behrndt, C.-P.J. Heisenberg, Developmental Cell 31 (2014) 774–783.
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| PubMed | Europe PMC
J. Compagnon, V. Barone, S. Rajshekar, R. Kottmeier, K. Pranjic-Ferscha, M. Behrndt, C.-P.J. Heisenberg, Developmental Cell 31 (2014) 774–783.
2014 | Journal Article | IST-REx-ID: 2083 |

Role of sex and migration in adaptation to sink environments
M. Lagator, A. Morgan, P. Neve, N. Colegrave, Evolution 68 (2014) 2296–2305.
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M. Lagator, A. Morgan, P. Neve, N. Colegrave, Evolution 68 (2014) 2296–2305.
2014 | Research Data Reference | IST-REx-ID: 9747 |

Data from: Role of sex and migration in adaptation to sink environments
M. Lagator, A. Morgan, P. Neve, N. Colegrave, (2014).
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M. Lagator, A. Morgan, P. Neve, N. Colegrave, (2014).
2014 | Journal Article | IST-REx-ID: 2086 |

So near and yet so far: Harmonic radar reveals reduced homing ability of Nosema infected honeybees
S. Wolf, D. Mcmahon, K. Lim, C. Pull, S. Clark, R. Paxton, J. Osborne, PLoS One 9 (2014).
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S. Wolf, D. Mcmahon, K. Lim, C. Pull, S. Clark, R. Paxton, J. Osborne, PLoS One 9 (2014).
2014 | Research Data Reference | IST-REx-ID: 9888
Supporting information
S. Wolf, D. Mcmahon, K. Lim, C. Pull, S. Clark, R. Paxton, J. Osborne, (2014).
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| Files available
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S. Wolf, D. Mcmahon, K. Lim, C. Pull, S. Clark, R. Paxton, J. Osborne, (2014).
2014 | Journal Article | IST-REx-ID: 9458 |

Dnmt1-independent CG methylation contributes to nucleosome positioning in diverse eukaryotes
J.T. Huff, D. Zilberman, Cell 156 (2014) 1286–1297.
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| PubMed | Europe PMC
J.T. Huff, D. Zilberman, Cell 156 (2014) 1286–1297.
2014 | Journal Article | IST-REx-ID: 9479 |

The AAA-ATPase molecular chaperone Cdc48/p97 disassembles sumoylated centromeres, decondenses heterochromatin, and activates ribosomal RNA genes
Z. Mérai, N. Chumak, M. García-Aguilar, T.-F. Hsieh, T. Nishimura, V.K. Schoft, J. Bindics, L. Ślusarz, S. Arnoux, S. Opravil, K. Mechtler, D. Zilberman, R.L. Fischer, H. Tamaru, Proceedings of the National Academy of Sciences 111 (2014) 16166–16171.
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| DOI
| Download Published Version (ext.)
| PubMed | Europe PMC
Z. Mérai, N. Chumak, M. García-Aguilar, T.-F. Hsieh, T. Nishimura, V.K. Schoft, J. Bindics, L. Ślusarz, S. Arnoux, S. Opravil, K. Mechtler, D. Zilberman, R.L. Fischer, H. Tamaru, Proceedings of the National Academy of Sciences 111 (2014) 16166–16171.
2014 | Journal Article | IST-REx-ID: 2004 |

Boolean modelling reveals new regulatory connections between transcription factors orchestrating the development of the ventral spinal cord
A. Lovrics, Y. Gao, B. Juhász, I. Bock, H. Byrne, A. Dinnyés, K. Kovács, PLoS One 9 (2014).
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A. Lovrics, Y. Gao, B. Juhász, I. Bock, H. Byrne, A. Dinnyés, K. Kovács, PLoS One 9 (2014).
2014 | Research Data Reference | IST-REx-ID: 9722
Transition probability between TF expression states when Dbx2 inhibits Nkx2.2
A. Lovrics, Y. Gao, B. Juhász, I. Bock, H.M. Byrne, A. Dinnyés, K. Kovács, (2014).
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A. Lovrics, Y. Gao, B. Juhász, I. Bock, H.M. Byrne, A. Dinnyés, K. Kovács, (2014).
2014 | Journal Article | IST-REx-ID: 2039 |

The time scale of evolutionary innovation
K. Chatterjee, A. Pavlogiannis, B. Adlam, M. Nowak, PLoS Computational Biology 10 (2014).
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K. Chatterjee, A. Pavlogiannis, B. Adlam, M. Nowak, PLoS Computational Biology 10 (2014).
2014 | Journal Article | IST-REx-ID: 2161
Increased grooming after repeated brood care provides sanitary benefits in a clonal ant
C. Westhus, L.V. Ugelvig, E. Tourdot, J. Heinze, C. Doums, S. Cremer, Behavioral Ecology and Sociobiology 68 (2014) 1701–1710.
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C. Westhus, L.V. Ugelvig, E. Tourdot, J. Heinze, C. Doums, S. Cremer, Behavioral Ecology and Sociobiology 68 (2014) 1701–1710.
2014 | Journal Article | IST-REx-ID: 2036 |

Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses
M. Lagator, N. Colegrave, P. Neve, Proceedings of the Royal Society of London Series B Biological Sciences 281 (2014).
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M. Lagator, N. Colegrave, P. Neve, Proceedings of the Royal Society of London Series B Biological Sciences 281 (2014).
2014 | Research Data Reference | IST-REx-ID: 9740 |

Data from: Anti-pathogen protection versus survival costs mediated by an ectosymbiont in an ant host
M. Konrad, A.V. Grasse, S. Tragust, S. Cremer, (2014).
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M. Konrad, A.V. Grasse, S. Tragust, S. Cremer, (2014).
2014 | Research Data Reference | IST-REx-ID: 9741 |

Data from: Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses
M. Lagator, N. Colegrave, P. Neve, (2014).
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M. Lagator, N. Colegrave, P. Neve, (2014).
2014 | Research Data Reference | IST-REx-ID: 9739
Detailed proofs for “The time scale of evolutionary innovation”
K. Chatterjee, A. Pavlogiannis, B. Adlam, M. Novak, (2014).
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K. Chatterjee, A. Pavlogiannis, B. Adlam, M. Novak, (2014).
2014 | Journal Article | IST-REx-ID: 2170 |

Likelihood-based inference of population history from low-coverage de novo genome assemblies
J. Hearn, G. Stone, L. Bunnefeld, J. Nicholls, N.H. Barton, K. Lohse, Molecular Ecology 23 (2014) 198–211.
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J. Hearn, G. Stone, L. Bunnefeld, J. Nicholls, N.H. Barton, K. Lohse, Molecular Ecology 23 (2014) 198–211.
2014 | Research Data Reference | IST-REx-ID: 9753 |

Data from: Pupal cocoons affect sanitary brood care and limit fungal infections in ant colonies
S. Tragust, L.V. Ugelvig, M. Chapuisat, J. Heinze, S. Cremer, (2014).
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S. Tragust, L.V. Ugelvig, M. Chapuisat, J. Heinze, S. Cremer, (2014).
2014 | Research Data Reference | IST-REx-ID: 9752 |

Data from: Transformation of stimulus correlations by the retina
K. Simmons, J. Prentice, G. Tkačik, J. Homann, H. Yee, S. Palmer, P. Nelson, V. Balasubramanian, (2014).
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K. Simmons, J. Prentice, G. Tkačik, J. Homann, H. Yee, S. Palmer, P. Nelson, V. Balasubramanian, (2014).
2014 | Journal Article | IST-REx-ID: 9931
Increased gene dosage plays a predominant role in the initial stages of evolution of duplicate TEM-1 beta lactamase genes
R. Dhar, T. Bergmiller, A. Wagner, Evolution 68 (2014) 1775–1791.
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| PubMed | Europe PMC
R. Dhar, T. Bergmiller, A. Wagner, Evolution 68 (2014) 1775–1791.
2014 | Research Data Reference | IST-REx-ID: 9932 |

Data from: Increased gene dosage plays a predominant role in the initial stages of evolution of duplicate TEM-1 beta lactamase genes
R. Dhar, T. Bergmiller, A. Wagner, (2014).
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R. Dhar, T. Bergmiller, A. Wagner, (2014).
2014 | Journal Article | IST-REx-ID: 1999
Organisational immunity in social insects
N. Stroeymeyt, B.E. Casillas Perez, S. Cremer, Current Opinion in Insect Science 5 (2014) 1–15.
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N. Stroeymeyt, B.E. Casillas Perez, S. Cremer, Current Opinion in Insect Science 5 (2014) 1–15.
2013 | Journal Article | IST-REx-ID: 10396 |

Stimfit: A fast visualization and analysis environment for cellular neurophysiology
A. Schlögl, P.M. Jonas, C. Schmidt-Hieber, S.J. Guzman, Biomedical Engineering / Biomedizinische Technik 58 (2013).
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A. Schlögl, P.M. Jonas, C. Schmidt-Hieber, S.J. Guzman, Biomedical Engineering / Biomedizinische Technik 58 (2013).
2013 | Journal Article | IST-REx-ID: 10895 |

Calcium: The missing link in auxin action
S. Vanneste, J. Friml, Plants 2 (2013) 650–675.
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S. Vanneste, J. Friml, Plants 2 (2013) 650–675.
2013 | Conference Paper | IST-REx-ID: 10902
How to travel between languages
K. Chatterjee, S. Chaubal, S. Rubin, in:, 7th International Conference on Language and Automata Theory and Applications, Springer Nature, Berlin, Heidelberg, 2013, pp. 214–225.
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K. Chatterjee, S. Chaubal, S. Rubin, in:, 7th International Conference on Language and Automata Theory and Applications, Springer Nature, Berlin, Heidelberg, 2013, pp. 214–225.
2013 | Book Chapter | IST-REx-ID: 10900
Live Cell Imaging of Chemotactic Dendritic Cell Migration in Explanted Mouse Ear Preparations
M. Weber, M.K. Sixt, in:, A. Cardona, E. Ubogu (Eds.), Chemokines, Humana Press, Totowa, NJ, 2013, pp. 215–226.
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M. Weber, M.K. Sixt, in:, A. Cardona, E. Ubogu (Eds.), Chemokines, Humana Press, Totowa, NJ, 2013, pp. 215–226.
2013 | Conference Paper | IST-REx-ID: 10897
Persistent homology in image processing
H. Edelsbrunner, in:, Graph-Based Representations in Pattern Recognition, Springer Nature, Berlin, Heidelberg, 2013, pp. 182–183.
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H. Edelsbrunner, in:, Graph-Based Representations in Pattern Recognition, Springer Nature, Berlin, Heidelberg, 2013, pp. 182–183.
2013 | Conference Paper | IST-REx-ID: 10898
Distributed queues in shared memory: Multicore performance and scalability through quantitative relaxation
A. Haas, M. Lippautz, T.A. Henzinger, H. Payer, A. Sokolova, C.M. Kirsch, A. Sezgin, in:, Proceedings of the ACM International Conference on Computing Frontiers - CF ’13, ACM Press, 2013.
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A. Haas, M. Lippautz, T.A. Henzinger, H. Payer, A. Sokolova, C.M. Kirsch, A. Sezgin, in:, Proceedings of the ACM International Conference on Computing Frontiers - CF ’13, ACM Press, 2013.
2013 | Book Chapter | IST-REx-ID: 10899
Differentiation
N.H. Barton, in:, Encyclopedia of Biodiversity, 2nd ed., Elsevier, 2013, pp. 508–515.
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N.H. Barton, in:, Encyclopedia of Biodiversity, 2nd ed., Elsevier, 2013, pp. 508–515.
2013 | Conference Paper | IST-REx-ID: 1374 |

Infinite-state games with finitary conditions
K. Chatterjee, N. Fijalkow, in:, 22nd EACSL Annual Conference on Computer Science Logic, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013, pp. 181–196.
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K. Chatterjee, N. Fijalkow, in:, 22nd EACSL Annual Conference on Computer Science Logic, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013, pp. 181–196.
2013 | Conference Paper | IST-REx-ID: 1385 |

Synthesizing multiple boolean functions using interpolation on a single proof
G. Hofferek, A. Gupta, B. Könighofer, J. Jiang, R. Bloem, in:, 2013 Formal Methods in Computer-Aided Design, IEEE, 2013, pp. 77–84.
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G. Hofferek, A. Gupta, B. Könighofer, J. Jiang, R. Bloem, in:, 2013 Formal Methods in Computer-Aided Design, IEEE, 2013, pp. 77–84.
2013 | Conference Paper | IST-REx-ID: 1387 |

Nondeterminism in the presence of a diverse or unknown future
U. Boker, D. Kuperberg, O. Kupferman, M. Skrzypczak, 7966 (2013) 89–100.
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U. Boker, D. Kuperberg, O. Kupferman, M. Skrzypczak, 7966 (2013) 89–100.
2013 | Thesis | IST-REx-ID: 1406
Mechanics of zebrafish epiboly: Tension-oriented cell divisions limit anisotropic tissue tension in epithelial spreading
P. Campinho, Mechanics of Zebrafish Epiboly: Tension-Oriented Cell Divisions Limit Anisotropic Tissue Tension in Epithelial Spreading, IST Austria, 2013.
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P. Campinho, Mechanics of Zebrafish Epiboly: Tension-Oriented Cell Divisions Limit Anisotropic Tissue Tension in Epithelial Spreading, IST Austria, 2013.
2013 | Journal Article | IST-REx-ID: 2010 |

Geometry of the faithfulness assumption in causal inference
C. Uhler, G. Raskutti, P. Bühlmann, B. Yu, The Annals of Statistics 41 (2013) 436–463.
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| arXiv
C. Uhler, G. Raskutti, P. Bühlmann, B. Yu, The Annals of Statistics 41 (2013) 436–463.
2013 | Journal Article | IST-REx-ID: 2009 |

Privacy-preserving data sharing for genome-wide association studies
C. Uhler, A. Slavkovic, S. Fienberg, Journal of Privacy and Confidentiality 5 (2013) 137–166.
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C. Uhler, A. Slavkovic, S. Fienberg, Journal of Privacy and Confidentiality 5 (2013) 137–166.
2013 | Conference Paper | IST-REx-ID: 2181 |

Quantitative relaxation of concurrent data structures
T.A. Henzinger, C. Kirsch, H. Payer, A. Sezgin, A. Sokolova, in:, Proceedings of the 40th Annual ACM SIGPLAN-SIGACT Symposium on Principles of Programming Language, ACM, 2013, pp. 317–328.
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T.A. Henzinger, C. Kirsch, H. Payer, A. Sezgin, A. Sokolova, in:, Proceedings of the 40th Annual ACM SIGPLAN-SIGACT Symposium on Principles of Programming Language, ACM, 2013, pp. 317–328.
2013 | Conference Paper | IST-REx-ID: 2182
Quantitative abstraction refinement
P. Cerny, T.A. Henzinger, A. Radhakrishna, in:, Proceedings of the 40th Annual ACM SIGPLAN-SIGACT Symposium on Principles of Programming Language, ACM, 2013, pp. 115–128.
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P. Cerny, T.A. Henzinger, A. Radhakrishna, in:, Proceedings of the 40th Annual ACM SIGPLAN-SIGACT Symposium on Principles of Programming Language, ACM, 2013, pp. 115–128.
2013 | Conference Paper | IST-REx-ID: 2209
Recognizing straight skeletons and Voronoi diagrams and reconstructing their input
T. Biedl, M. Held, S. Huber, in:, IEEE, 2013, pp. 37–46.
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T. Biedl, M. Held, S. Huber, in:, IEEE, 2013, pp. 37–46.
2013 | Conference Paper | IST-REx-ID: 2210 |

Reconstructing polygons from embedded straight skeletons
T. Biedl, M. Held, S. Huber, in:, 29th European Workshop on Computational Geometry, TU Braunschweig, 2013, pp. 95–98.
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T. Biedl, M. Held, S. Huber, in:, 29th European Workshop on Computational Geometry, TU Braunschweig, 2013, pp. 95–98.
2013 | Conference Paper | IST-REx-ID: 2237 |

Tree interpolation in Vampire
R. Blanc, A. Gupta, L. Kovács, B. Kragl, 8312 (2013) 173–181.
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R. Blanc, A. Gupta, L. Kovács, B. Kragl, 8312 (2013) 173–181.
2013 | Conference Paper | IST-REx-ID: 2238
Multi-objective discounted reward verification in graphs and MDPs
K. Chatterjee, V. Forejt, D. Wojtczak, 8312 (2013) 228–242.
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K. Chatterjee, V. Forejt, D. Wojtczak, 8312 (2013) 228–242.
2013 | Conference Paper | IST-REx-ID: 2243 |

Elementary modal logics over transitive structures
J. Michaliszyn, J. Otop, 23 (2013) 563–577.
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J. Michaliszyn, J. Otop, 23 (2013) 563–577.
2013 | Conference Paper | IST-REx-ID: 2244 |

Untangling two systems of noncrossing curves
J. Matoušek, E. Sedgwick, M. Tancer, U. Wagner, 8242 (2013) 472–483.
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| arXiv
J. Matoušek, E. Sedgwick, M. Tancer, U. Wagner, 8242 (2013) 472–483.
2013 | Conference Paper | IST-REx-ID: 2259 |

Learning with rounding, revisited: New reduction properties and applications
J.F. Alwen, S. Krenn, K.Z. Pietrzak, D. Wichs, 8042 (2013) 57–74.
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J.F. Alwen, S. Krenn, K.Z. Pietrzak, D. Wichs, 8042 (2013) 57–74.
2013 | Conference Paper | IST-REx-ID: 2258 |

Digital signatures with minimal overhead from indifferentiable random invertible functions
E. Kiltz, K.Z. Pietrzak, M. Szegedy, 8042 (2013) 571–588.
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E. Kiltz, K.Z. Pietrzak, M. Szegedy, 8042 (2013) 571–588.
2013 | Conference Paper | IST-REx-ID: 2260 |

Efficient signatures of knowledge and DAA in the standard model
D. Bernhard, G. Fuchsbauer, E. Ghadafi, 7954 (2013) 518–533.
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D. Bernhard, G. Fuchsbauer, E. Ghadafi, 7954 (2013) 518–533.
2013 | Journal Article | IST-REx-ID: 2264 |

Neural development is dependent on the function of specificity protein 2 in cell cycle progression
H. Liang, G. Xiao, H. Yin, S. Hippenmeyer, J. Horowitz, T. Ghashghaei, Development 140 (2013) 552–561.
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| PubMed | Europe PMC
H. Liang, G. Xiao, H. Yin, S. Hippenmeyer, J. Horowitz, T. Ghashghaei, Development 140 (2013) 552–561.
2013 | Conference Paper | IST-REx-ID: 2272 |

Inference algorithms for pattern-based CRFs on sequence data
R. Takhanov, V. Kolmogorov, in:, ICML’13 Proceedings of the 30th International Conference on International, International Machine Learning Society, 2013, pp. 145–153.
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R. Takhanov, V. Kolmogorov, in:, ICML’13 Proceedings of the 30th International Conference on International, International Machine Learning Society, 2013, pp. 145–153.
2013 | Conference Paper | IST-REx-ID: 2270 |

Optimal Coalition Structures in Cooperative Graph Games
Y. Bachrach, P. Kohli, V. Kolmogorov, M. Zadimoghaddam, in:, AAAI Press, 2013, pp. 81–87.
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Y. Bachrach, P. Kohli, V. Kolmogorov, M. Zadimoghaddam, in:, AAAI Press, 2013, pp. 81–87.
2013 | Report | IST-REx-ID: 2274 |

Proofs of Space
S. Dziembowski, S. Faust, V. Kolmogorov, K.Z. Pietrzak, Proofs of Space, IST Austria, 2013.
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S. Dziembowski, S. Faust, V. Kolmogorov, K.Z. Pietrzak, Proofs of Space, IST Austria, 2013.
2013 | Report | IST-REx-ID: 2273 |

Reweighted message passing revisited
V. Kolmogorov, Reweighted Message Passing Revisited, IST Austria, 2013.
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V. Kolmogorov, Reweighted Message Passing Revisited, IST Austria, 2013.
2013 | Journal Article | IST-REx-ID: 2278
A serrate-notch-canoe complex mediates essential interactions between glia and neuroepithelial cells during Drosophila optic lobe development
R. Pérez Gómez, J. Slovakova, N. Rives Quinto, A. Krejčí, A. Carmena, Journal of Cell Science 126 (2013) 4873–4884.
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R. Pérez Gómez, J. Slovakova, N. Rives Quinto, A. Krejčí, A. Carmena, Journal of Cell Science 126 (2013) 4873–4884.