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5242 Publications

2009 | Published | Journal Article | IST-REx-ID: 3775 | OA
On the application of statistical physics to evolutionary biology
N.H. Barton, J. Coe, Journal of Theoretical Biology 259 (2009) 317–324.
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2009 | Published | Journal Article | IST-REx-ID: 3780 | OA
The effect of chirality phenotype and genotype on the fecundity and viability of Partula suturalis and Lymnaea stagnalis: Implications for the evolution of sinistral snails
A. Davison, N.H. Barton, B. Clarke, Journal of Evolutionary Biology 22 (2009) 1624–1635.
[Submitted Version] View | Files available | DOI
 
2009 | Published | Conference Paper | IST-REx-ID: 3837 | OA
On relational interfaces
S. Tripakis, B. Lickly, T.A. Henzinger, E. Lee, in:, EMSOFT ’09 Proceedings of the Seventh ACM International Conference on Embedded Software, ACM, 2009, pp. 67–76.
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2009 | Published | Conference Paper | IST-REx-ID: 3841 | OA
Formalisms for specifying Markovian population models
T.A. Henzinger, B. Jobstmann, V. Wolf, in:, Springer, 2009, pp. 3–23.
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2009 | Published | Conference Paper | IST-REx-ID: 3843 | OA
Fast adaptive uniformization of the chemical master equation
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, in:, IEEE, 2009, pp. 118–127.
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2009 | Published | Conference Paper | IST-REx-ID: 3844 | OA
Distributed, modular HTL
T.A. Henzinger, C. Kirsch, E. Marques, A. Sokolova, in:, IEEE, 2009, pp. 171–180.
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2009 | Published | Journal Article | IST-REx-ID: 3870 | OA
Finitary winning in omega-regular games
K. Chatterjee, T.A. Henzinger, F. Horn, ACM Transactions on Computational Logic (TOCL) 11 (2009).
[Submitted Version] View | Files available | DOI
 
2009 | Published | Conference Paper | IST-REx-ID: 3871 | OA
Probabilistic weighted automata
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 244–258.
[Submitted Version] View | Files available | DOI
 
2008 | Published | Journal Article | IST-REx-ID: 517
Identity and coalescence in structured populations: A commentary on 'Inbreeding coefficients and coalescence times' by Montgomery Slatkin
N.H. Barton, Genetics Research 89 (2008) 475–477.
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2008 | Published | Journal Article | IST-REx-ID: 9457 | OA
Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks
D. Zilberman, D. Coleman-Derr, T. Ballinger, S. Henikoff, Nature 456 (2008) 125–129.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2008 | Published | Journal Article | IST-REx-ID: 9537
The evolving functions of DNA methylation
D. Zilberman, Current Opinion in Plant Biology 11 (2008) 554–559.
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2007 | Published | Journal Article | IST-REx-ID: 9487 | OA
DNA demethylation in the Arabidopsis genome
J. Penterman, D. Zilberman, J.H. Huh, T. Ballinger, S. Henikoff, R.L. Fischer, Proceedings of the National Academy of Sciences 104 (2007) 6752–6757.
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2007 | Published | Other Publication | IST-REx-ID: 9504
The human promoter methylome
D. Zilberman, The Human Promoter Methylome, Nature Publishing Group, 2007.
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2007 | Published | Journal Article | IST-REx-ID: 9524 | OA
Genome-wide analysis of DNA methylation patterns
D. Zilberman, S. Henikoff, Development 134 (2007) 3959–3965.
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2007 | Published | Journal Article | IST-REx-ID: 12201
Packaging the male germline in plants
X. Feng, H.G. Dickinson, Trends in Genetics 23 (2007) 503–510.
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2006 | Published | Journal Article | IST-REx-ID: 9505
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
D. Zilberman, M. Gehring, R.K. Tran, T. Ballinger, S. Henikoff, Nature Genetics 39 (2006) 61–69.
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2005 | Published | Journal Article | IST-REx-ID: 9491 | OA
DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes
R.K. Tran, J.G. Henikoff, D. Zilberman, R.F. Ditt, S.E. Jacobsen, S. Henikoff, Current Biology 15 (2005) 154–159.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2005 | Published | Journal Article | IST-REx-ID: 9514 | OA
Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis
R.K. Tran, D. Zilberman, C. de Bustos, R.F. Ditt, J.G. Henikoff, A.M. Lindroth, J. Delrow, T. Boyle, S. Kwong, T.D. Bryson, S.E. Jacobsen, S. Henikoff, Genome Biology 6 (2005).
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2005 | Published | Journal Article | IST-REx-ID: 9529
Epigenetic inheritance in Arabidopsis: Selective silence
D. Zilberman, S. Henikoff, Current Opinion in Genetics and Development 15 (2005) 557–562.
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2004 | Published | Journal Article | IST-REx-ID: 9454
RNA silencing genes control de novo DNA methylation
S.W.-L. Chan, D. Zilberman, Zhixin Xie, Lisa K. Johansen, J.C. Carrington, S.E. Jacobsen, Science 303 (2004) 1336.
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