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VÖB Mitteilungen. 71(1), 199–206.","mla":"Petritsch, Barbara, and Jana Porsche. “IST PubRep and IST DataRep: The Institutional Repositories at IST Austria.” <i>VÖB Mitteilungen</i>, vol. 71, no. 1, Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare, 2018, pp. 199–206, doi:<a href=\"https://doi.org/10.31263/voebm.v71i1.1993\">10.31263/voebm.v71i1.1993</a>.","apa":"Petritsch, B., &#38; Porsche, J. (2018). IST PubRep and IST DataRep: the institutional repositories at IST Austria. <i>VÖB Mitteilungen</i>. Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare. <a href=\"https://doi.org/10.31263/voebm.v71i1.1993\">https://doi.org/10.31263/voebm.v71i1.1993</a>","ieee":"B. Petritsch and J. Porsche, “IST PubRep and IST DataRep: the institutional repositories at IST Austria,” <i>VÖB Mitteilungen</i>, vol. 71, no. 1. Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare, pp. 199–206, 2018.","short":"B. Petritsch, J. Porsche, VÖB Mitteilungen 71 (2018) 199–206."},"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"department":[{"_id":"E-Lib"}],"file_date_updated":"2020-07-14T12:46:38Z","date_created":"2018-12-11T11:44:22Z","date_updated":"2021-01-12T08:01:26Z","has_accepted_license":"1","intvolume":"        71","language":[{"iso":"eng"}],"month":"10","title":"IST PubRep and IST DataRep: the institutional repositories at IST Austria","oa_version":"Published Version","year":"2018","issue":"1","_id":"53","oa":1,"file":[{"file_size":509434,"relation":"main_file","file_id":"5702","creator":"dernst","date_created":"2018-12-17T12:40:27Z","access_level":"open_access","content_type":"application/pdf","file_name":"2018_VOEB_Petritsch.pdf","date_updated":"2020-07-14T12:46:38Z","checksum":"7ac61bade5f37db011ca435ebcf86797"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"last_name":"Petritsch","orcid":"0000-0003-2724-4614","full_name":"Petritsch, Barbara","id":"406048EC-F248-11E8-B48F-1D18A9856A87","first_name":"Barbara"},{"first_name":"Jana","full_name":"Porsche, Jana","id":"3252EDC2-F248-11E8-B48F-1D18A9856A87","last_name":"Porsche"}],"publication_status":"published","ddc":["020"],"status":"public","abstract":[{"text":"In 2013, a publication repository was implemented at IST Austria and 2015 after a thorough preparation phase a data repository was implemented - both based on the Open Source Software EPrints. In this text, designed as field report, we will reflect on our experiences with Open Source Software in general and specifically with EPrints regarding technical aspects but also regarding their characteristics of the user community. The second part is a pleading for including the end users in the process of implementation, adaption and evaluation.","lang":"eng"}],"date_published":"2018-10-01T00:00:00Z","scopus_import":1},{"day":"07","publisher":"Institute of Science and Technology Austria","doi":"10.15479/AT:ISTA:0113","title":"Fluorescence lifetime analysis of FLIM X16 TCSPC data","keyword":["FLIM","FRET","fluorescence lifetime imaging"],"type":"research_data","year":"2018","_id":"5588","citation":{"chicago":"Hauschild, Robert. “Fluorescence Lifetime Analysis of FLIM X16 TCSPC Data.” Institute of Science and Technology Austria, 2018. <a href=\"https://doi.org/10.15479/AT:ISTA:0113\">https://doi.org/10.15479/AT:ISTA:0113</a>.","ama":"Hauschild R. Fluorescence lifetime analysis of FLIM X16 TCSPC data. 2018. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:0113\">10.15479/AT:ISTA:0113</a>","ieee":"R. Hauschild, “Fluorescence lifetime analysis of FLIM X16 TCSPC data.” Institute of Science and Technology Austria, 2018.","ista":"Hauschild R. 2018. Fluorescence lifetime analysis of FLIM X16 TCSPC data, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:0113\">10.15479/AT:ISTA:0113</a>.","mla":"Hauschild, Robert. <i>Fluorescence Lifetime Analysis of FLIM X16 TCSPC Data</i>. Institute of Science and Technology Austria, 2018, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:0113\">10.15479/AT:ISTA:0113</a>.","apa":"Hauschild, R. (2018). Fluorescence lifetime analysis of FLIM X16 TCSPC data. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:0113\">https://doi.org/10.15479/AT:ISTA:0113</a>","short":"R. Hauschild, (2018)."},"oa_version":"Published Version","month":"11","article_processing_charge":"No","date_updated":"2024-02-21T13:44:21Z","has_accepted_license":"1","ddc":["570"],"abstract":[{"lang":"eng","text":"Script to perform a simple exponential lifetime fit of a ROI on time stacks acquired with a FLIM X16 TCSPC detector (+example data)"}],"date_published":"2018-11-07T00:00:00Z","status":"public","file":[{"relation":"main_file","file_size":47866557,"file_id":"6296","access_level":"open_access","date_created":"2019-04-11T18:15:01Z","creator":"rhauschild","content_type":"application/x-zip-compressed","date_updated":"2020-07-14T12:47:08Z","file_name":"IST-2018-113-v1+1_FLIMX16TCSPCLifeTimeFit.zip","checksum":"a4e160054c9114600624cf89a925fd7d"}],"tmp":{"image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"date_created":"2018-12-12T12:31:41Z","file_date_updated":"2020-07-14T12:47:08Z","author":[{"last_name":"Hauschild","orcid":"0000-0001-9843-3522","first_name":"Robert","full_name":"Hauschild, Robert","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87"}],"datarep_id":"113","department":[{"_id":"Bio"}]},{"scopus_import":1,"language":[{"iso":"eng"}],"date_published":"2018-05-09T00:00:00Z","status":"public","has_accepted_license":"1","date_updated":"2024-10-09T20:58:54Z","ddc":["020"],"file_date_updated":"2020-07-14T12:47:10Z","date_created":"2018-12-17T10:28:26Z","publication_status":"published","department":[{"_id":"E-Lib"}],"author":[{"last_name":"Danowski","orcid":"0000-0002-6026-4409","first_name":"Patrick","id":"2EBD1598-F248-11E8-B48F-1D18A9856A87","full_name":"Danowski, Patrick"}],"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"file":[{"access_level":"open_access","date_created":"2019-01-22T09:06:51Z","creator":"dernst","content_type":"application/pdf","file_size":202798,"relation":"main_file","file_id":"5872","checksum":"6cb95f8772491d155ce77c6160655fff","date_updated":"2020-07-14T12:47:10Z","file_name":"2018_WorkingPaper_Danowski.pdf"}],"oa":1,"_id":"5686","citation":{"short":"P. Danowski, An Austrian Proposal for the Classification of Open Access Tuples (COAT) - Distinguish Different Open Access Types beyond Colors, 2018.","ieee":"P. Danowski, <i>An Austrian proposal for the Classification of Open Access Tuples (COAT) - Distinguish different Open Access types beyond colors</i>. 2018.","mla":"Danowski, Patrick. <i>An Austrian Proposal for the Classification of Open Access Tuples (COAT) - Distinguish Different Open Access Types beyond Colors</i>. 2018, doi:<a href=\"https://doi.org/10.5281/zenodo.1244154\">10.5281/zenodo.1244154</a>.","apa":"Danowski, P. (2018). <i>An Austrian proposal for the Classification of Open Access Tuples (COAT) - Distinguish different Open Access types beyond colors</i>. <a href=\"https://doi.org/10.5281/zenodo.1244154\">https://doi.org/10.5281/zenodo.1244154</a>","ista":"Danowski P. 2018. An Austrian proposal for the Classification of Open Access Tuples (COAT) - Distinguish different Open Access types beyond colors, 5p.","ama":"Danowski P. <i>An Austrian Proposal for the Classification of Open Access Tuples (COAT) - Distinguish Different Open Access Types beyond Colors</i>.; 2018. doi:<a href=\"https://doi.org/10.5281/zenodo.1244154\">10.5281/zenodo.1244154</a>","chicago":"Danowski, Patrick. <i>An Austrian Proposal for the Classification of Open Access Tuples (COAT) - Distinguish Different Open Access Types beyond Colors</i>, 2018. <a href=\"https://doi.org/10.5281/zenodo.1244154\">https://doi.org/10.5281/zenodo.1244154</a>."},"year":"2018","oa_version":"Published Version","day":"09","doi":"10.5281/zenodo.1244154","page":"5","type":"working_paper","related_material":{"record":[{"id":"6657","relation":"later_version","status":"public"}]},"title":"An Austrian proposal for the Classification of Open Access Tuples (COAT) - Distinguish different Open Access types beyond colors","article_processing_charge":"No","month":"05"},{"title":"Fast and efficient genetic engineering of hematopoietic precursor cells for the study of dendritic cell migration","issue":"6","_id":"437","year":"2018","oa_version":"Published Version","month":"02","article_processing_charge":"Yes (via OA deal)","ddc":["570"],"acknowledgement":"This work was supported by grants of the European Research Council (ERC CoG 724373) and the Austrian Science Fund (FWF) to M.S. We thank the scientific support units at IST Austria for excellent technical support.\r\nWe thank the  scientific  support units at IST Austria for excellent technical support.   ","date_published":"2018-02-13T00:00:00Z","abstract":[{"text":"Dendritic cells (DCs) are sentinels of the adaptive immune system that reside in peripheral organs of mammals. Upon pathogen encounter, they undergo maturation and up-regulate the chemokine receptor CCR7 that guides them along gradients of its chemokine ligands CCL19 and 21 to the next draining lymph node. 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However, since a couple of years the tendency towards a freely accessible publishing (Open Access) intensifies. As a consequence of this trend the contractual relationship between licensor and licensee is gradually changing as well: More and more contracts exercise influence on open access publishing. The present study attempts to compare Austrian examples of consortial licence contracts, which include components of open access. It describes the difference between pure subscription contracts and differing innovative deals including open access components. Thereby it becomes obvious that for the evaluation of this licence contracts new methods are needed. An essential new element of such analyses is the evaluation of the open access publication numbers. So this study tries to carry out such publication analyses for Austrian open access deals focusing on quantitative questions: How does the number of publications evolve? How does the open access share change? Publications reports of the publishers and database queries from Scopus form the data basis. The analysis of the data points out that differing approaches of contracts result in highly divergent results: Particular deals can prioritize a saving in costs or else the increase of the open access rate. It is to be assumed that within the following years further numerous open access deals will be negotiated. 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Villányi, (2018)."},"_id":"5580","year":"2018"},{"has_accepted_license":"1","date_updated":"2026-04-08T14:02:27Z","ddc":["020"],"date_published":"2018-01-16T00:00:00Z","abstract":[{"lang":"ger","text":"Comparison of Scopus' and FWF's data on Austrian publication output at T&F."}],"status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"access_level":"open_access","date_created":"2018-12-12T13:02:32Z","creator":"system","content_type":"application/zip","file_size":741195,"relation":"main_file","file_id":"5598","checksum":"a887246c2b41b98df90ccbc1d62b4487","date_updated":"2020-07-14T12:47:05Z","file_name":"IST-2018-88-v1+1_Data_Check_T_F_Scopus_vs._FWF.zip"}],"tmp":{"image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode"},"oa":1,"date_created":"2018-12-12T12:31:37Z","file_date_updated":"2020-07-14T12:47:05Z","department":[{"_id":"E-Lib"}],"author":[{"last_name":"Villányi","orcid":"0000-0001-8126-0426","id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87","full_name":"Villányi, Márton","first_name":"Márton"}],"datarep_id":"88","doi":"10.15479/AT:ISTA:88","publisher":"Institute of Science and Technology Austria","day":"16","type":"research_data","keyword":["Publication analysis","Bibliography","Open Access"],"title":"Data Check T&F Scopus vs. FWF","related_material":{"record":[{"id":"278","relation":"part_of_dissertation","status":"public"}]},"citation":{"chicago":"Villányi, Márton. “Data Check T&#38;F Scopus vs. FWF.” Institute of Science and Technology Austria, 2018. <a href=\"https://doi.org/10.15479/AT:ISTA:88\">https://doi.org/10.15479/AT:ISTA:88</a>.","ama":"Villányi M. Data Check T&#38;F Scopus vs. FWF. 2018. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:88\">10.15479/AT:ISTA:88</a>","ieee":"M. Villányi, “Data Check T&#38;F Scopus vs. FWF.” Institute of Science and Technology Austria, 2018.","mla":"Villányi, Márton. <i>Data Check T&#38;F Scopus vs. FWF</i>. Institute of Science and Technology Austria, 2018, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:88\">10.15479/AT:ISTA:88</a>.","apa":"Villányi, M. (2018). Data Check T&#38;F Scopus vs. FWF. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:88\">https://doi.org/10.15479/AT:ISTA:88</a>","ista":"Villányi M. 2018. Data Check T&#38;F Scopus vs. FWF, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:88\">10.15479/AT:ISTA:88</a>.","short":"M. Villányi, (2018)."},"_id":"5576","year":"2018","oa_version":"Submitted Version","month":"01","article_processing_charge":"No"},{"status":"public","date_published":"2018-01-16T00:00:00Z","abstract":[{"text":"Comparison of Scopus' and FWF's data on Austrian publication output at RSC. ","lang":"ger"}],"ddc":["020"],"has_accepted_license":"1","date_updated":"2026-04-08T14:02:27Z","department":[{"_id":"E-Lib"}],"datarep_id":"87","author":[{"last_name":"Villányi","orcid":"0000-0001-8126-0426","full_name":"Villányi, Márton","id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87","first_name":"Márton"}],"file_date_updated":"2020-07-14T12:47:05Z","date_created":"2018-12-12T12:31:37Z","oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","tmp":{"image":"/images/cc_0.png","name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode"},"file":[{"content_type":"application/zip","access_level":"open_access","date_created":"2018-12-12T13:02:44Z","creator":"system","file_id":"5610","file_size":277078,"relation":"main_file","checksum":"563cc5266c0bac354007873c92be777b","date_updated":"2020-07-14T12:47:05Z","file_name":"IST-2018-87-v1+1_Data_Check_RSC_Scopus_vs._FWF.zip"}],"oa_version":"Submitted Version","citation":{"short":"M. Villányi, (2018).","ieee":"M. Villányi, “Data Check RSC Scopus vs. FWF.” Institute of Science and Technology Austria, 2018.","mla":"Villányi, Márton. <i>Data Check RSC Scopus vs. FWF</i>. Institute of Science and Technology Austria, 2018, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:87\">10.15479/AT:ISTA:87</a>.","ista":"Villányi M. 2018. Data Check RSC Scopus vs. FWF, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:87\">10.15479/AT:ISTA:87</a>.","apa":"Villányi, M. (2018). Data Check RSC Scopus vs. FWF. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:87\">https://doi.org/10.15479/AT:ISTA:87</a>","ama":"Villányi M. Data Check RSC Scopus vs. FWF. 2018. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:87\">10.15479/AT:ISTA:87</a>","chicago":"Villányi, Márton. “Data Check RSC Scopus vs. FWF.” Institute of Science and Technology Austria, 2018. <a href=\"https://doi.org/10.15479/AT:ISTA:87\">https://doi.org/10.15479/AT:ISTA:87</a>."},"_id":"5575","year":"2018","type":"research_data","keyword":["Publication analysis","Bibliography","Open Access"],"title":"Data Check RSC Scopus vs. FWF","related_material":{"record":[{"status":"public","relation":"part_of_dissertation","id":"278"}]},"day":"16","doi":"10.15479/AT:ISTA:87","publisher":"Institute of Science and Technology Austria","article_processing_charge":"No","month":"01"},{"publist_id":"8040","main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pubmed/29777221","open_access":"1"}],"publication":"Nature Immunology","related_material":{"record":[{"id":"6891","relation":"dissertation_contains","status":"public"}]},"ec_funded":1,"type":"journal_article","page":"606 - 616","publisher":"Nature Publishing Group","doi":"10.1038/s41590-018-0109-z","day":"18","volume":19,"citation":{"short":"M. Hons, A. Kopf, R. Hauschild, A.F. Leithner, F.R. Gärtner, J. Abe, J. Renkawitz, J. Stein, M.K. Sixt, Nature Immunology 19 (2018) 606–616.","mla":"Hons, Miroslav, et al. “Chemokines and Integrins Independently Tune Actin Flow and Substrate Friction during Intranodal Migration of T Cells.” <i>Nature Immunology</i>, vol. 19, no. 6, Nature Publishing Group, 2018, pp. 606–16, doi:<a href=\"https://doi.org/10.1038/s41590-018-0109-z\">10.1038/s41590-018-0109-z</a>.","ista":"Hons M, Kopf A, Hauschild R, Leithner AF, Gärtner FR, Abe J, Renkawitz J, Stein J, Sixt MK. 2018. Chemokines and integrins independently tune actin flow and substrate friction during intranodal migration of T cells. Nature Immunology. 19(6), 606–616.","apa":"Hons, M., Kopf, A., Hauschild, R., Leithner, A. F., Gärtner, F. R., Abe, J., … Sixt, M. K. (2018). Chemokines and integrins independently tune actin flow and substrate friction during intranodal migration of T cells. <i>Nature Immunology</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/s41590-018-0109-z\">https://doi.org/10.1038/s41590-018-0109-z</a>","ieee":"M. Hons <i>et al.</i>, “Chemokines and integrins independently tune actin flow and substrate friction during intranodal migration of T cells,” <i>Nature Immunology</i>, vol. 19, no. 6. Nature Publishing Group, pp. 606–616, 2018.","ama":"Hons M, Kopf A, Hauschild R, et al. Chemokines and integrins independently tune actin flow and substrate friction during intranodal migration of T cells. <i>Nature Immunology</i>. 2018;19(6):606-616. doi:<a href=\"https://doi.org/10.1038/s41590-018-0109-z\">10.1038/s41590-018-0109-z</a>","chicago":"Hons, Miroslav, Aglaja Kopf, Robert Hauschild, Alexander F Leithner, Florian R Gärtner, Jun Abe, Jörg Renkawitz, Jens Stein, and Michael K Sixt. “Chemokines and Integrins Independently Tune Actin Flow and Substrate Friction during Intranodal Migration of T Cells.” <i>Nature Immunology</i>. Nature Publishing Group, 2018. <a href=\"https://doi.org/10.1038/s41590-018-0109-z\">https://doi.org/10.1038/s41590-018-0109-z</a>."},"acknowledged_ssus":[{"_id":"SSU"}],"department":[{"_id":"MiSi"},{"_id":"Bio"}],"date_created":"2018-12-11T11:44:10Z","external_id":{"isi":["000433041500026"],"pmid":["29777221"]},"date_updated":"2026-05-04T22:30:37Z","intvolume":"        19","language":[{"iso":"eng"}],"quality_controlled":"1","month":"05","pmid":1,"article_processing_charge":"No","title":"Chemokines and integrins independently tune actin flow and substrate friction during intranodal migration of T cells","oa_version":"Published Version","year":"2018","issue":"6","_id":"15","oa":1,"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","isi":1,"author":[{"orcid":"0000-0002-6625-3348","last_name":"Hons","first_name":"Miroslav","id":"4167FE56-F248-11E8-B48F-1D18A9856A87","full_name":"Hons, Miroslav"},{"full_name":"Kopf, Aglaja","id":"31DAC7B6-F248-11E8-B48F-1D18A9856A87","first_name":"Aglaja","orcid":"0000-0002-2187-6656","last_name":"Kopf"},{"last_name":"Hauschild","orcid":"0000-0001-9843-3522","first_name":"Robert","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","full_name":"Hauschild, Robert"},{"id":"3B1B77E4-F248-11E8-B48F-1D18A9856A87","full_name":"Leithner, Alexander F","first_name":"Alexander F","orcid":"0000-0002-1073-744X","last_name":"Leithner"},{"full_name":"Gärtner, Florian R","id":"397A88EE-F248-11E8-B48F-1D18A9856A87","first_name":"Florian R","last_name":"Gärtner","orcid":"0000-0001-6120-3723"},{"last_name":"Abe","full_name":"Abe, Jun","first_name":"Jun"},{"orcid":"0000-0003-2856-3369","last_name":"Renkawitz","first_name":"Jörg","full_name":"Renkawitz, Jörg","id":"3F0587C8-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Stein","full_name":"Stein, Jens","first_name":"Jens"},{"first_name":"Michael K","full_name":"Sixt, Michael K","id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6620-9179","last_name":"Sixt"}],"project":[{"name":"Cellular Navigation Along Spatial Gradients","call_identifier":"H2020","grant_number":"724373","_id":"25FE9508-B435-11E9-9278-68D0E5697425"},{"_id":"260AA4E2-B435-11E9-9278-68D0E5697425","grant_number":"747687","name":"Mechanical Adaptation of Lamellipodial Actin Networks in Migrating Cells","call_identifier":"H2020"},{"_id":"25A48D24-B435-11E9-9278-68D0E5697425","grant_number":"ALTF 1396-2014","name":"Molecular and system level view of immune cell migration"},{"name":"Cytoskeletal force generation and force transduction of migrating leukocytes","call_identifier":"FP7","grant_number":"281556","_id":"25A603A2-B435-11E9-9278-68D0E5697425"}],"publication_status":"published","acknowledgement":"This work was funded by grants from the European Research Council (ERC StG 281556 and CoG 724373) and the Austrian Science Foundation (FWF) to M.S. and by Swiss National Foundation (SNF) project grants 31003A_135649, 31003A_153457 and CR23I3_156234 to J.V.S. F.G. received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement no. 747687, and J.R. was funded by an EMBO long-term fellowship (ALTF 1396-2014).","status":"public","scopus_import":"1","abstract":[{"lang":"eng","text":"Although much is known about the physiological framework of T cell motility, and numerous rate-limiting molecules have been identified through loss-of-function approaches, an integrated functional concept of T cell motility is lacking. Here, we used in vivo precision morphometry together with analysis of cytoskeletal dynamics in vitro to deconstruct the basic mechanisms of T cell migration within lymphatic organs. We show that the contributions of the integrin LFA-1 and the chemokine receptor CCR7 are complementary rather than positioned in a linear pathway, as they are during leukocyte extravasation from the blood vasculature. Our data demonstrate that CCR7 controls cortical actin flows, whereas integrins mediate substrate friction that is sufficient to drive locomotion in the absence of considerable surface adhesions and plasma membrane flux."}],"date_published":"2018-05-18T00:00:00Z"},{"type":"journal_article","ec_funded":1,"related_material":{"record":[{"relation":"dissertation_contains","id":"10083","status":"public"}]},"day":"05","publisher":"Bio-protocol","doi":"10.21769/BioProtoc.2685","pubrep_id":"970","volume":8,"citation":{"ama":"Li L, Krens G, Fendrych M, Friml J. Real-time analysis of auxin response, cell wall pH and elongation in Arabidopsis thaliana Hypocotyls. <i>Bio-protocol</i>. 2018;8(1). doi:<a href=\"https://doi.org/10.21769/BioProtoc.2685\">10.21769/BioProtoc.2685</a>","chicago":"Li, Lanxin, Gabriel Krens, Matyas Fendrych, and Jiří Friml. “Real-Time Analysis of Auxin Response, Cell Wall PH and Elongation in Arabidopsis Thaliana Hypocotyls.” <i>Bio-Protocol</i>. Bio-protocol, 2018. <a href=\"https://doi.org/10.21769/BioProtoc.2685\">https://doi.org/10.21769/BioProtoc.2685</a>.","short":"L. Li, G. Krens, M. Fendrych, J. Friml, Bio-Protocol 8 (2018).","ieee":"L. Li, G. Krens, M. Fendrych, and J. Friml, “Real-time analysis of auxin response, cell wall pH and elongation in Arabidopsis thaliana Hypocotyls,” <i>Bio-protocol</i>, vol. 8, no. 1. Bio-protocol, 2018.","mla":"Li, Lanxin, et al. “Real-Time Analysis of Auxin Response, Cell Wall PH and Elongation in Arabidopsis Thaliana Hypocotyls.” <i>Bio-Protocol</i>, vol. 8, no. 1, Bio-protocol, 2018, doi:<a href=\"https://doi.org/10.21769/BioProtoc.2685\">10.21769/BioProtoc.2685</a>.","ista":"Li L, Krens G, Fendrych M, Friml J. 2018. Real-time analysis of auxin response, cell wall pH and elongation in Arabidopsis thaliana Hypocotyls. Bio-protocol. 8(1).","apa":"Li, L., Krens, G., Fendrych, M., &#38; Friml, J. (2018). Real-time analysis of auxin response, cell wall pH and elongation in Arabidopsis thaliana Hypocotyls. <i>Bio-Protocol</i>. Bio-protocol. <a href=\"https://doi.org/10.21769/BioProtoc.2685\">https://doi.org/10.21769/BioProtoc.2685</a>"},"publist_id":"7381","publication":"Bio-protocol","corr_author":"1","has_accepted_license":"1","date_updated":"2026-05-04T22:31:08Z","publication_identifier":{"eissn":["2331-8325"]},"quality_controlled":"1","language":[{"iso":"eng"}],"intvolume":"         8","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"department":[{"_id":"JiFr"},{"_id":"Bio"}],"date_created":"2018-12-11T11:46:30Z","file_date_updated":"2020-07-14T12:46:29Z","title":"Real-time analysis of auxin response, cell wall pH and elongation in Arabidopsis thaliana Hypocotyls","oa_version":"Published Version","issue":"1","_id":"442","year":"2018","month":"01","article_processing_charge":"No","ddc":["576","581"],"acknowledgement":"This protocol was adapted from Fendrych et al., 2016. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 665385, and Austrian Science Fund (FWF) [M 2128-B21]. ","status":"public","date_published":"2018-01-05T00:00:00Z","abstract":[{"text":"The rapid auxin-triggered growth of the Arabidopsis hypocotyls involves the nuclear TIR1/AFB-Aux/IAA signaling and is accompanied by acidification of the apoplast and cell walls (Fendrych et al., 2016). Here, we describe in detail the method for analysis of the elongation and the TIR1/AFB-Aux/IAA-dependent auxin response in hypocotyl segments as well as the determination of relative values of the cell wall pH.","lang":"eng"}],"oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"date_updated":"2020-07-14T12:46:29Z","file_name":"IST-2018-970-v1+1_2018_Lanxin_Real-time_analysis.pdf","checksum":"6644ba698206eda32b0abf09128e63e3","file_size":11352389,"relation":"main_file","file_id":"5299","access_level":"open_access","date_created":"2018-12-12T10:17:43Z","creator":"system","content_type":"application/pdf"}],"author":[{"last_name":"Li","orcid":"0000-0002-5607-272X","full_name":"Li, Lanxin","id":"367EF8FA-F248-11E8-B48F-1D18A9856A87","first_name":"Lanxin"},{"orcid":"0000-0003-4761-5996","last_name":"Krens","full_name":"Krens, Gabriel","id":"2B819732-F248-11E8-B48F-1D18A9856A87","first_name":"Gabriel"},{"last_name":"Fendrych","orcid":"0000-0002-9767-8699","first_name":"Matyas","id":"43905548-F248-11E8-B48F-1D18A9856A87","full_name":"Fendrych, Matyas"},{"first_name":"Jirí","full_name":"Friml, Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596","last_name":"Friml"}],"article_type":"original","publication_status":"published","project":[{"_id":"2564DBCA-B435-11E9-9278-68D0E5697425","grant_number":"665385","name":"International IST Doctoral Program","call_identifier":"H2020"}]},{"extern":"1","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.1704.08686","open_access":"1"}],"publication":"2017 IEEE International Conference on Computer Vision (ICCV)","publisher":"IEEE","day":"25","doi":"10.1109/iccv.2017.603","type":"conference","citation":{"ieee":"O. Litany, T. Remez, E. Rodola, A. Bronstein, and M. Bronstein, “Deep functional maps: Structured prediction for dense shape correspondence,” in <i>2017 IEEE International Conference on Computer Vision (ICCV)</i>, 2017, vol. 31.","apa":"Litany, O., Remez, T., Rodola, E., Bronstein, A., &#38; Bronstein, M. (2017). Deep functional maps: Structured prediction for dense shape correspondence. In <i>2017 IEEE International Conference on Computer Vision (ICCV)</i> (Vol. 31). IEEE. <a href=\"https://doi.org/10.1109/iccv.2017.603\">https://doi.org/10.1109/iccv.2017.603</a>","ista":"Litany O, Remez T, Rodola E, Bronstein A, Bronstein M. 2017. Deep functional maps: Structured prediction for dense shape correspondence. 2017 IEEE International Conference on Computer Vision (ICCV). 16th IEEE International Conference on Computer Vision vol. 31, 8237865.","mla":"Litany, Or, et al. “Deep Functional Maps: Structured Prediction for Dense Shape Correspondence.” <i>2017 IEEE International Conference on Computer Vision (ICCV)</i>, vol. 31, 8237865, IEEE, 2017, doi:<a href=\"https://doi.org/10.1109/iccv.2017.603\">10.1109/iccv.2017.603</a>.","short":"O. Litany, T. Remez, E. Rodola, A. Bronstein, M. Bronstein, in:, 2017 IEEE International Conference on Computer Vision (ICCV), IEEE, 2017.","chicago":"Litany, Or, Tal Remez, Emanuele Rodola, Alexander Bronstein, and Michael Bronstein. “Deep Functional Maps: Structured Prediction for Dense Shape Correspondence.” In <i>2017 IEEE International Conference on Computer Vision (ICCV)</i>, Vol. 31. IEEE, 2017. <a href=\"https://doi.org/10.1109/iccv.2017.603\">https://doi.org/10.1109/iccv.2017.603</a>.","ama":"Litany O, Remez T, Rodola E, Bronstein A, Bronstein M. Deep functional maps: Structured prediction for dense shape correspondence. In: <i>2017 IEEE International Conference on Computer Vision (ICCV)</i>. Vol 31. IEEE; 2017. doi:<a href=\"https://doi.org/10.1109/iccv.2017.603\">10.1109/iccv.2017.603</a>"},"volume":31,"date_created":"2024-10-09T07:48:43Z","article_number":"8237865","department":[{"_id":"E-Lib"}],"date_updated":"2024-12-05T14:20:54Z","external_id":{"arxiv":["1704.08686"]},"intvolume":"        31","quality_controlled":"1","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["9781538610329"]},"month":"12","article_processing_charge":"No","title":"Deep functional maps: Structured prediction for dense shape correspondence","year":"2017","_id":"18286","oa_version":"Preprint","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","oa":1,"publication_status":"published","author":[{"full_name":"Litany, Or","first_name":"Or","last_name":"Litany"},{"first_name":"Tal","full_name":"Remez, Tal","last_name":"Remez"},{"first_name":"Emanuele","full_name":"Rodola, Emanuele","last_name":"Rodola"},{"last_name":"Bronstein","full_name":"Bronstein, Alexander","first_name":"Alexander"},{"last_name":"Bronstein","first_name":"Michael","full_name":"Bronstein, Michael"}],"conference":{"name":"16th IEEE International Conference on Computer Vision","end_date":"2017-10-29","start_date":"2017-10-22"},"arxiv":1,"scopus_import":"1","abstract":[{"lang":"eng","text":"We introduce a new framework for learning dense correspondence between deformable 3D shapes. Existing learning based approaches model shape correspondence as a labelling problem, where each point of a query shape receives a label identifying a point on some reference domain; the correspondence is then constructed a posteriori by composing the label predictions of two input shapes. We propose a paradigm shift and design a structured prediction model in the space of functional maps, linear operators that provide a compact representation of the correspondence. We model the learning process via a deep residual network which takes dense descriptor fields defined on two shapes as input, and outputs a soft map between the two given objects. The resulting correspondence is shown to be accurate on several challenging benchmarks comprising multiple categories, synthetic models, real scans with acquisition artifacts, topological noise, and partiality."}],"date_published":"2017-12-25T00:00:00Z","status":"public"},{"oa":1,"file":[{"success":1,"checksum":"7bcc499479d4f4c5ce6c0071c24ca6c6","date_updated":"2023-05-16T07:20:50Z","file_name":"2017_AHPC_Schloegl.pdf","content_type":"application/pdf","access_level":"open_access","creator":"dernst","date_created":"2023-05-16T07:20:50Z","file_id":"12969","relation":"main_file","file_size":1005486}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"full_name":"Schlögl, Alois","id":"45BF87EE-F248-11E8-B48F-1D18A9856A87","first_name":"Alois","last_name":"Schlögl","orcid":"0000-0002-5621-8100"},{"last_name":"Kiss","first_name":"Janos","full_name":"Kiss, Janos","id":"3D3A06F8-F248-11E8-B48F-1D18A9856A87"}],"department":[{"_id":"ScienComp"}],"date_created":"2023-05-05T12:58:53Z","publication_status":"published","file_date_updated":"2023-05-16T07:20:50Z","conference":{"location":"Grundlsee, Austria","name":"AHPC: Austrian HPC Meeting","end_date":"2017-03-03","start_date":"2017-03-01"},"corr_author":"1","ddc":["000"],"date_updated":"2024-10-09T21:05:23Z","has_accepted_license":"1","status":"public","language":[{"iso":"eng"}],"date_published":"2017-03-03T00:00:00Z","month":"03","main_file_link":[{"open_access":"1","url":"https://vsc.ac.at/fileadmin/user_upload/vsc/conferences/ahpc17/BOOKLET_AHPC17.pdf"}],"article_processing_charge":"No","publication":"AHPC17 – Austrian HPC Meeting 2017","title":"Scientific Computing at IST Austria","type":"conference_abstract","page":"28","day":"03","publisher":"FSP Scientific Computing","oa_version":"Published Version","year":"2017","_id":"12905","citation":{"short":"A. Schlögl, J. Kiss, in:, AHPC17 – Austrian HPC Meeting 2017, FSP Scientific Computing, 2017, p. 28.","ieee":"A. Schlögl and J. Kiss, “Scientific Computing at IST Austria,” in <i>AHPC17 – Austrian HPC Meeting 2017</i>, Grundlsee, Austria, 2017, p. 28.","mla":"Schlögl, Alois, and Janos Kiss. “Scientific Computing at IST Austria.” <i>AHPC17 – Austrian HPC Meeting 2017</i>, FSP Scientific Computing, 2017, p. 28.","ista":"Schlögl A, Kiss J. 2017. Scientific Computing at IST Austria. AHPC17 – Austrian HPC Meeting 2017. AHPC: Austrian HPC Meeting, 28.","apa":"Schlögl, A., &#38; Kiss, J. (2017). Scientific Computing at IST Austria. In <i>AHPC17 – Austrian HPC Meeting 2017</i> (p. 28). Grundlsee, Austria: FSP Scientific Computing.","ama":"Schlögl A, Kiss J. Scientific Computing at IST Austria. In: <i>AHPC17 – Austrian HPC Meeting 2017</i>. FSP Scientific Computing; 2017:28.","chicago":"Schlögl, Alois, and Janos Kiss. “Scientific Computing at IST Austria.” In <i>AHPC17 – Austrian HPC Meeting 2017</i>, 28. FSP Scientific Computing, 2017."}},{"article_processing_charge":"No","month":"01","_id":"1078","issue":"119","year":"2017","oa_version":"Published Version","title":"Light sheet fluorescence microscopy of plant roots growing on the surface of a gel","publication_status":"published","project":[{"grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425","name":"International IST Postdoc Fellowship Programme","call_identifier":"FP7"},{"grant_number":"282300","_id":"25716A02-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"Polarity and subcellular dynamics in plants"}],"author":[{"first_name":"Daniel","id":"49E91952-F248-11E8-B48F-1D18A9856A87","full_name":"Von Wangenheim, Daniel","last_name":"Von Wangenheim","orcid":"0000-0002-6862-1247"},{"last_name":"Hauschild","orcid":"0000-0001-9843-3522","full_name":"Hauschild, Robert","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","first_name":"Robert"},{"full_name":"Friml, Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jirí","orcid":"0000-0002-8302-7596","last_name":"Friml"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","isi":1,"file":[{"access_level":"open_access","date_created":"2018-12-12T10:16:31Z","creator":"system","content_type":"application/pdf","file_size":57678,"relation":"main_file","file_id":"5219","date_updated":"2018-12-12T10:16:31Z","file_name":"IST-2017-808-v1+1_2017_VWangenheim_list.pdf"},{"file_id":"5220","file_size":1317820,"relation":"main_file","content_type":"application/pdf","access_level":"open_access","date_created":"2018-12-12T10:16:32Z","creator":"system","date_updated":"2018-12-12T10:16:32Z","file_name":"IST-2017-808-v1+2_2017_VWangenheim_article.pdf"}],"oa":1,"scopus_import":"1","date_published":"2017-01-18T00:00:00Z","abstract":[{"lang":"eng","text":"One of the key questions in understanding plant development is how single cells behave in a larger context of the tissue. Therefore, it requires the observation of the whole organ with a high spatial- as well as temporal resolution over prolonged periods of time, which may cause photo-toxic effects. This protocol shows a plant sample preparation method for light-sheet microscopy, which is characterized by mounting the plant vertically on the surface of a gel. The plant is mounted in such a way that the roots are submerged in a liquid medium while the leaves remain in the air. In order to ensure photosynthetic activity of the plant, a custom-made lighting system illuminates the leaves. To keep the roots in darkness the water surface is covered with sheets of black plastic foil. This method allows long-term imaging of plant organ development in standardized conditions. "}],"status":"public","ddc":["580"],"publication":"Journal of visualized experiments JoVE","publist_id":"6302","citation":{"short":"D. von Wangenheim, R. Hauschild, J. Friml, Journal of Visualized Experiments JoVE 2017 (2017).","ieee":"D. von Wangenheim, R. Hauschild, and J. Friml, “Light sheet fluorescence microscopy of plant roots growing on the surface of a gel,” <i>Journal of visualized experiments JoVE</i>, vol. 2017, no. 119. Journal of Visualized Experiments, 2017.","apa":"von Wangenheim, D., Hauschild, R., &#38; Friml, J. (2017). Light sheet fluorescence microscopy of plant roots growing on the surface of a gel. <i>Journal of Visualized Experiments JoVE</i>. Journal of Visualized Experiments. <a href=\"https://doi.org/10.3791/55044\">https://doi.org/10.3791/55044</a>","mla":"von Wangenheim, Daniel, et al. “Light Sheet Fluorescence Microscopy of Plant Roots Growing on the Surface of a Gel.” <i>Journal of Visualized Experiments JoVE</i>, vol. 2017, no. 119, e55044, Journal of Visualized Experiments, 2017, doi:<a href=\"https://doi.org/10.3791/55044\">10.3791/55044</a>.","ista":"von Wangenheim D, Hauschild R, Friml J. 2017. Light sheet fluorescence microscopy of plant roots growing on the surface of a gel. Journal of visualized experiments JoVE. 2017(119), e55044.","ama":"von Wangenheim D, Hauschild R, Friml J. Light sheet fluorescence microscopy of plant roots growing on the surface of a gel. <i>Journal of visualized experiments JoVE</i>. 2017;2017(119). doi:<a href=\"https://doi.org/10.3791/55044\">10.3791/55044</a>","chicago":"Wangenheim, Daniel von, Robert Hauschild, and Jiří Friml. “Light Sheet Fluorescence Microscopy of Plant Roots Growing on the Surface of a Gel.” <i>Journal of Visualized Experiments JoVE</i>. Journal of Visualized Experiments, 2017. <a href=\"https://doi.org/10.3791/55044\">https://doi.org/10.3791/55044</a>."},"volume":2017,"publisher":"Journal of Visualized Experiments","doi":"10.3791/55044","day":"18","pubrep_id":"808","ec_funded":1,"type":"journal_article","related_material":{"record":[{"status":"public","relation":"popular_science","id":"5565"}]},"date_created":"2018-12-11T11:50:01Z","file_date_updated":"2018-12-12T10:16:32Z","department":[{"_id":"JiFr"},{"_id":"Bio"}],"article_number":"e55044","acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"Bio"}],"language":[{"iso":"eng"}],"intvolume":"      2017","has_accepted_license":"1","date_updated":"2025-04-15T06:50:23Z","external_id":{"isi":["000397847200041"]}}]