---
_id: '8931'
abstract:
- lang: eng
  text: "Auxin is a major plant growth regulator, but current models on auxin perception
    and signaling cannot explain the whole plethora of auxin effects, in particular
    those associated with rapid responses. A possible candidate for a component of
    additional auxin perception mechanisms is the AUXIN BINDING PROTEIN 1 (ABP1),
    whose function in planta remains unclear.\r\nHere we combined expression analysis
    with gain- and loss-of-function approaches to analyze the role of ABP1 in plant
    development. ABP1 shows a broad expression largely overlapping with, but not regulated
    by, transcriptional auxin response activity. Furthermore, ABP1 activity is not
    essential for the transcriptional auxin signaling. Genetic in planta analysis
    revealed that abp1 loss-of-function mutants show largely normal development with
    minor defects in bolting. On the other hand, ABP1 gain-of-function alleles show
    a broad range of growth and developmental defects, including root and hypocotyl
    growth and bending, lateral root and leaf development, bolting, as well as response
    to heat stress. At the cellular level, ABP1 gain-of-function leads to impaired
    auxin effect on PIN polar distribution and affects BFA-sensitive PIN intracellular
    aggregation.\r\nThe gain-of-function analysis suggests a broad, but still mechanistically
    unclear involvement of ABP1 in plant development, possibly masked in abp1 loss-of-function
    mutants by a functional redundancy."
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
acknowledgement: We would like to acknowledge Bioimaging and Life Science Facilities
  at IST Austria for continuous support and also the Plant Sciences Core Facility
  of CEITEC Masaryk University for their support with obtaining a part of the scientific
  data. We gratefully acknowledge Lindy Abas for help with ABP1::GFP-ABP1 construct
  design. This project has received funding from the European Research Council (ERC)
  under the European Union’s Horizon 2020 research and innovation program [grant agreement
  no. 742985] and Austrian Science Fund (FWF) [I 3630-B25] to J.F.; DOC Fellowship
  of the Austrian Academy of Sciences to L.L.; the European Structural and Investment
  Funds, Operational Programme Research, Development and Education - Project „MSCAfellow@MUNI“
  [CZ.02.2.69/0.0/0.0/17_050/0008496] to M.P.. This project was also supported by
  the Czech Science Foundation [GA 20-20860Y] to M.Z and MEYS CR [project no.CZ.02.1.01/0.0/0.0/16_019/0000738]
  to M. Č.
article_number: '110750'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Zuzana
  full_name: Gelová, Zuzana
  id: 0AE74790-0E0B-11E9-ABC7-1ACFE5697425
  last_name: Gelová
  orcid: 0000-0003-4783-1752
- first_name: Michelle C
  full_name: Gallei, Michelle C
  id: 35A03822-F248-11E8-B48F-1D18A9856A87
  last_name: Gallei
  orcid: 0000-0003-1286-7368
- first_name: Markéta
  full_name: Pernisová, Markéta
  last_name: Pernisová
- first_name: Géraldine
  full_name: Brunoud, Géraldine
  last_name: Brunoud
- first_name: Xixi
  full_name: Zhang, Xixi
  id: 61A66458-47E9-11EA-85BA-8AEAAF14E49A
  last_name: Zhang
  orcid: 0000-0001-7048-4627
- first_name: Matous
  full_name: Glanc, Matous
  id: 1AE1EA24-02D0-11E9-9BAA-DAF4881429F2
  last_name: Glanc
  orcid: 0000-0003-0619-7783
- first_name: Lanxin
  full_name: Li, Lanxin
  id: 367EF8FA-F248-11E8-B48F-1D18A9856A87
  last_name: Li
  orcid: 0000-0002-5607-272X
- first_name: Jaroslav
  full_name: Michalko, Jaroslav
  id: 483727CA-F248-11E8-B48F-1D18A9856A87
  last_name: Michalko
- first_name: Zlata
  full_name: Pavlovicova, Zlata
  last_name: Pavlovicova
- first_name: Inge
  full_name: Verstraeten, Inge
  id: 362BF7FE-F248-11E8-B48F-1D18A9856A87
  last_name: Verstraeten
  orcid: 0000-0001-7241-2328
- first_name: Huibin
  full_name: Han, Huibin
  id: 31435098-F248-11E8-B48F-1D18A9856A87
  last_name: Han
- first_name: Jakub
  full_name: Hajny, Jakub
  id: 4800CC20-F248-11E8-B48F-1D18A9856A87
  last_name: Hajny
  orcid: 0000-0003-2140-7195
- first_name: Robert
  full_name: Hauschild, Robert
  id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
  last_name: Hauschild
  orcid: 0000-0001-9843-3522
- first_name: Milada
  full_name: Čovanová, Milada
  last_name: Čovanová
- first_name: Marta
  full_name: Zwiewka, Marta
  last_name: Zwiewka
- first_name: Lukas
  full_name: Hörmayer, Lukas
  id: 2EEE7A2A-F248-11E8-B48F-1D18A9856A87
  last_name: Hörmayer
  orcid: 0000-0001-8295-2926
- first_name: Matyas
  full_name: Fendrych, Matyas
  id: 43905548-F248-11E8-B48F-1D18A9856A87
  last_name: Fendrych
  orcid: 0000-0002-9767-8699
- first_name: Tongda
  full_name: Xu, Tongda
  last_name: Xu
- first_name: Teva
  full_name: Vernoux, Teva
  last_name: Vernoux
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Gelová Z, Gallei MC, Pernisová M, et al. Developmental roles of auxin binding
    protein 1 in Arabidopsis thaliana. <i>Plant Science</i>. 2021;303. doi:<a href="https://doi.org/10.1016/j.plantsci.2020.110750">10.1016/j.plantsci.2020.110750</a>
  apa: Gelová, Z., Gallei, M. C., Pernisová, M., Brunoud, G., Zhang, X., Glanc, M.,
    … Friml, J. (2021). Developmental roles of auxin binding protein 1 in Arabidopsis
    thaliana. <i>Plant Science</i>. Elsevier. <a href="https://doi.org/10.1016/j.plantsci.2020.110750">https://doi.org/10.1016/j.plantsci.2020.110750</a>
  chicago: Gelová, Zuzana, Michelle C Gallei, Markéta Pernisová, Géraldine Brunoud,
    Xixi Zhang, Matous Glanc, Lanxin Li, et al. “Developmental Roles of Auxin Binding
    Protein 1 in Arabidopsis Thaliana.” <i>Plant Science</i>. Elsevier, 2021. <a href="https://doi.org/10.1016/j.plantsci.2020.110750">https://doi.org/10.1016/j.plantsci.2020.110750</a>.
  ieee: Z. Gelová <i>et al.</i>, “Developmental roles of auxin binding protein 1 in
    Arabidopsis thaliana,” <i>Plant Science</i>, vol. 303. Elsevier, 2021.
  ista: Gelová Z, Gallei MC, Pernisová M, Brunoud G, Zhang X, Glanc M, Li L, Michalko
    J, Pavlovicova Z, Verstraeten I, Han H, Hajny J, Hauschild R, Čovanová M, Zwiewka
    M, Hörmayer L, Fendrych M, Xu T, Vernoux T, Friml J. 2021. Developmental roles
    of auxin binding protein 1 in Arabidopsis thaliana. Plant Science. 303, 110750.
  mla: Gelová, Zuzana, et al. “Developmental Roles of Auxin Binding Protein 1 in Arabidopsis
    Thaliana.” <i>Plant Science</i>, vol. 303, 110750, Elsevier, 2021, doi:<a href="https://doi.org/10.1016/j.plantsci.2020.110750">10.1016/j.plantsci.2020.110750</a>.
  short: Z. Gelová, M.C. Gallei, M. Pernisová, G. Brunoud, X. Zhang, M. Glanc, L.
    Li, J. Michalko, Z. Pavlovicova, I. Verstraeten, H. Han, J. Hajny, R. Hauschild,
    M. Čovanová, M. Zwiewka, L. Hörmayer, M. Fendrych, T. Xu, T. Vernoux, J. Friml,
    Plant Science 303 (2021).
corr_author: '1'
date_created: 2020-12-09T14:48:28Z
date_published: 2021-02-01T00:00:00Z
date_updated: 2026-08-21T22:30:46Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
- _id: Bio
doi: 10.1016/j.plantsci.2020.110750
ec_funded: 1
external_id:
  isi:
  - '000614154500001'
  pmid:
  - '33487339'
file:
- access_level: open_access
  checksum: a7f2562bdca62d67dfa88e271b62a629
  content_type: application/pdf
  creator: dernst
  date_created: 2021-02-04T07:49:25Z
  date_updated: 2021-02-04T07:49:25Z
  file_id: '9083'
  file_name: 2021_PlantScience_Gelova.pdf
  file_size: 12563728
  relation: main_file
  success: 1
file_date_updated: 2021-02-04T07:49:25Z
has_accepted_license: '1'
intvolume: '       303'
isi: 1
keyword:
- Agronomy and Crop Science
- Plant Science
- Genetics
- General Medicine
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
- _id: 26B4D67E-B435-11E9-9278-68D0E5697425
  grant_number: '25351'
  name: 'A Case Study of Plant Growth Regulation: Molecular Mechanism of Auxin-mediated
    Rapid Growth Inhibition in Arabidopsis Root'
publication: Plant Science
publication_identifier:
  issn:
  - 0168-9452
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  record:
  - id: '11626'
    relation: dissertation_contains
    status: public
  - id: '10083'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Developmental roles of auxin binding protein 1 in Arabidopsis thaliana
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 303
year: '2021'
...
---
_id: '10095'
abstract:
- lang: eng
  text: Growth regulation tailors plant development to its environment. A showcase
    is response to gravity, where shoots bend up and roots down1. This paradox is
    based on opposite effects of the phytohormone auxin, which promotes cell expansion
    in shoots, while inhibiting it in roots via a yet unknown cellular mechanism2.
    Here, by combining microfluidics, live imaging, genetic engineering and phospho-proteomics
    in Arabidopsis thaliana, we advance our understanding how auxin inhibits root
    growth. We show that auxin activates two distinct, antagonistically acting signalling
    pathways that converge on the rapid regulation of the apoplastic pH, a causative
    growth determinant. Cell surface-based TRANSMEMBRANE KINASE1 (TMK1) interacts
    with and mediates phosphorylation and activation of plasma membrane H+-ATPases
    for apoplast acidification, while intracellular canonical auxin signalling promotes
    net cellular H+-influx, causing apoplast alkalinisation. The simultaneous activation
    of these two counteracting mechanisms poises the root for a rapid, fine-tuned
    growth modulation while navigating complex soil environment.
acknowledged_ssus:
- _id: LifeSc
- _id: M-Shop
- _id: Bio
acknowledgement: We thank Nataliia Gnyliukh and Lukas Hörmayer for technical assistance
  and Nadine Paris for sharing PM-Cyto seeds. We gratefully acknowledge Life Science,
  Machine Shop and Bioimaging Facilities of IST Austria. This project has received
  funding from the European Research Council Advanced Grant (ETAP-742985) and the
  Austrian Science Fund (FWF) I 3630-B25 to J.F., the National Institutes of Health
  (GM067203) to W.M.G., the Netherlands Organization for Scientific Research (NWO;
  VIDI-864.13.001.), the Research Foundation-Flanders (FWO; Odysseus II G0D0515N)
  and a European Research Council Starting Grant (TORPEDO-714055) to W.S. and B.D.R.,
  the VICI grant (865.14.001) from the Netherlands Organization for Scientific Research
  to M.R and D.W., the Australian Research Council and China National Distinguished
  Expert Project (WQ20174400441) to S.S., the MEXT/JSPS KAKENHI to K.T. (20K06685)
  and T.K. (20H05687 and 20H05910),  the European Union’s Horizon 2020 research and
  innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 665385
  and the DOC Fellowship of the Austrian Academy of Sciences to L.L., the China Scholarship
  Council to J.C.
article_number: '266395'
article_processing_charge: No
author:
- first_name: Lanxin
  full_name: Li, Lanxin
  id: 367EF8FA-F248-11E8-B48F-1D18A9856A87
  last_name: Li
  orcid: 0000-0002-5607-272X
- first_name: Inge
  full_name: Verstraeten, Inge
  id: 362BF7FE-F248-11E8-B48F-1D18A9856A87
  last_name: Verstraeten
  orcid: 0000-0001-7241-2328
- first_name: Mark
  full_name: Roosjen, Mark
  last_name: Roosjen
- first_name: Koji
  full_name: Takahashi, Koji
  last_name: Takahashi
- first_name: Lesia
  full_name: Rodriguez Solovey, Lesia
  id: 3922B506-F248-11E8-B48F-1D18A9856A87
  last_name: Rodriguez Solovey
  orcid: 0000-0002-7244-7237
- first_name: Jack
  full_name: Merrin, Jack
  id: 4515C308-F248-11E8-B48F-1D18A9856A87
  last_name: Merrin
  orcid: 0000-0001-5145-4609
- first_name: Jian
  full_name: Chen, Jian
  last_name: Chen
- first_name: Lana
  full_name: Shabala, Lana
  last_name: Shabala
- first_name: Wouter
  full_name: Smet, Wouter
  last_name: Smet
- first_name: Hong
  full_name: Ren, Hong
  last_name: Ren
- first_name: Steffen
  full_name: Vanneste, Steffen
  last_name: Vanneste
- first_name: Sergey
  full_name: Shabala, Sergey
  last_name: Shabala
- first_name: Bert
  full_name: De Rybel, Bert
  last_name: De Rybel
- first_name: Dolf
  full_name: Weijers, Dolf
  last_name: Weijers
- first_name: Toshinori
  full_name: Kinoshita, Toshinori
  last_name: Kinoshita
- first_name: William M.
  full_name: Gray, William M.
  last_name: Gray
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Li L, Verstraeten I, Roosjen M, et al. Cell surface and intracellular auxin
    signalling for H+-fluxes in root growth. <i>Research Square</i>. doi:<a href="https://doi.org/10.21203/rs.3.rs-266395/v3">10.21203/rs.3.rs-266395/v3</a>
  apa: Li, L., Verstraeten, I., Roosjen, M., Takahashi, K., Rodriguez Solovey, L.,
    Merrin, J., … Friml, J. (n.d.). Cell surface and intracellular auxin signalling
    for H+-fluxes in root growth. <i>Research Square</i>. <a href="https://doi.org/10.21203/rs.3.rs-266395/v3">https://doi.org/10.21203/rs.3.rs-266395/v3</a>
  chicago: Li, Lanxin, Inge Verstraeten, Mark Roosjen, Koji Takahashi, Lesia Rodriguez
    Solovey, Jack Merrin, Jian Chen, et al. “Cell Surface and Intracellular Auxin
    Signalling for H+-Fluxes in Root Growth.” <i>Research Square</i>, n.d. <a href="https://doi.org/10.21203/rs.3.rs-266395/v3">https://doi.org/10.21203/rs.3.rs-266395/v3</a>.
  ieee: L. Li <i>et al.</i>, “Cell surface and intracellular auxin signalling for
    H+-fluxes in root growth,” <i>Research Square</i>. .
  ista: Li L, Verstraeten I, Roosjen M, Takahashi K, Rodriguez Solovey L, Merrin J,
    Chen J, Shabala L, Smet W, Ren H, Vanneste S, Shabala S, De Rybel B, Weijers D,
    Kinoshita T, Gray WM, Friml J. Cell surface and intracellular auxin signalling
    for H+-fluxes in root growth. Research Square, 266395.
  mla: Li, Lanxin, et al. “Cell Surface and Intracellular Auxin Signalling for H+-Fluxes
    in Root Growth.” <i>Research Square</i>, 266395, doi:<a href="https://doi.org/10.21203/rs.3.rs-266395/v3">10.21203/rs.3.rs-266395/v3</a>.
  short: L. Li, I. Verstraeten, M. Roosjen, K. Takahashi, L. Rodriguez Solovey, J.
    Merrin, J. Chen, L. Shabala, W. Smet, H. Ren, S. Vanneste, S. Shabala, B. De Rybel,
    D. Weijers, T. Kinoshita, W.M. Gray, J. Friml, Research Square (n.d.).
corr_author: '1'
date_created: 2021-10-06T08:56:22Z
date_published: 2021-09-09T00:00:00Z
date_updated: 2026-08-21T22:30:46Z
day: '09'
department:
- _id: JiFr
- _id: NanoFab
doi: 10.21203/rs.3.rs-266395/v3
ec_funded: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.doi.org/10.21203/rs.3.rs-266395/v3
month: '09'
oa: 1
oa_version: Preprint
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
- _id: 261099A6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742985'
  name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
- _id: 26B4D67E-B435-11E9-9278-68D0E5697425
  grant_number: '25351'
  name: 'A Case Study of Plant Growth Regulation: Molecular Mechanism of Auxin-mediated
    Rapid Growth Inhibition in Arabidopsis Root'
publication: Research Square
publication_identifier:
  issn:
  - 2693-5015
publication_status: draft
related_material:
  record:
  - id: '10223'
    relation: later_version
    status: public
  - id: '10083'
    relation: dissertation_contains
    status: public
status: public
title: Cell surface and intracellular auxin signalling for H+-fluxes in root growth
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '9887'
abstract:
- lang: eng
  text: Clathrin-mediated endocytosis is the major route of entry of cargos into cells
    and thus underpins many physiological processes. During endocytosis, an area of
    flat membrane is remodeled by proteins to create a spherical vesicle against intracellular
    forces. The protein machinery which mediates this membrane bending in plants is
    unknown. However, it is known that plant endocytosis is actin independent, thus
    indicating that plants utilize a unique mechanism to mediate membrane bending
    against high-turgor pressure compared to other model systems. Here, we investigate
    the TPLATE complex, a plant-specific endocytosis protein complex. It has been
    thought to function as a classical adaptor functioning underneath the clathrin
    coat. However, by using biochemical and advanced live microscopy approaches, we
    found that TPLATE is peripherally associated with clathrin-coated vesicles and
    localizes at the rim of endocytosis events. As this localization is more fitting
    to the protein machinery involved in membrane bending during endocytosis, we examined
    cells in which the TPLATE complex was disrupted and found that the clathrin structures
    present as flat patches. This suggests a requirement of the TPLATE complex for
    membrane bending during plant clathrin–mediated endocytosis. Next, we used in
    vitro biophysical assays to confirm that the TPLATE complex possesses protein
    domains with intrinsic membrane remodeling activity. These results redefine the
    role of the TPLATE complex and implicate it as a key component of the evolutionarily
    distinct plant endocytosis mechanism, which mediates endocytic membrane bending
    against the high-turgor pressure in plant cells.
acknowledged_ssus:
- _id: EM-Fac
- _id: LifeSc
- _id: Bio
acknowledgement: 'We gratefully thank Julie Neveu and Dr. Amanda Barranco of the Grégory
  Vert laboratory for help preparing plants in France, Dr. Zuzana Gelova for help
  and advice with protoplast generation, Dr. Stéphane Vassilopoulos and Dr. Florian
  Schur for advice regarding EM tomography, Alejandro Marquiegui Alvaro for help with
  material generation, and Dr. Lukasz Kowalski for generously gifting us the mWasabi
  protein. This research was supported by the Scientific Service Units of Institute
  of Science and Technology Austria (IST Austria) through resources provided by the
  Electron Microscopy Facility, Lab Support Facility (particularly Dorota Jaworska),
  and the Bioimaging Facility. We acknowledge the Advanced Microscopy Facility of
  the Vienna BioCenter Core Facilities for use of the 3D SIM. For the mass spectrometry
  analysis of proteins, we acknowledge the University of Natural Resources and Life
  Sciences (BOKU) Core Facility Mass Spectrometry. This work was supported by the
  following funds: A.J. is supported by funding from the Austrian Science Fund I3630B25
  to J.F. P.M. and E.B. are supported by Agence Nationale de la Recherche ANR-11-EQPX-0029
  Morphoscope2 and ANR-10-INBS-04 France BioImaging. S.Y.B. is supported by the NSF
  No. 1121998 and 1614915. J.W. and D.V.D. are supported by the European Research
  Council Grant 682436 (to D.V.D.), a China Scholarship Council Grant 201508440249
  (to J.W.), and by a Ghent University Special Research Co-funding Grant ST01511051
  (to J.W.).'
article_number: e2113046118
article_processing_charge: No
article_type: original
author:
- first_name: Alexander J
  full_name: Johnson, Alexander J
  id: 46A62C3A-F248-11E8-B48F-1D18A9856A87
  last_name: Johnson
  orcid: 0000-0002-2739-8843
- first_name: Dana A
  full_name: Dahhan, Dana A
  last_name: Dahhan
- first_name: Nataliia
  full_name: Gnyliukh, Nataliia
  id: 390C1120-F248-11E8-B48F-1D18A9856A87
  last_name: Gnyliukh
  orcid: 0000-0002-2198-0509
- first_name: Walter
  full_name: Kaufmann, Walter
  id: 3F99E422-F248-11E8-B48F-1D18A9856A87
  last_name: Kaufmann
  orcid: 0000-0001-9735-5315
- first_name: Vanessa
  full_name: Zheden, Vanessa
  id: 39C5A68A-F248-11E8-B48F-1D18A9856A87
  last_name: Zheden
  orcid: 0000-0002-9438-4783
- first_name: Tommaso
  full_name: Costanzo, Tommaso
  id: D93824F4-D9BA-11E9-BB12-F207E6697425
  last_name: Costanzo
  orcid: 0000-0001-9732-3815
- first_name: Pierre
  full_name: Mahou, Pierre
  last_name: Mahou
- first_name: Mónika
  full_name: Hrtyan, Mónika
  id: 45A71A74-F248-11E8-B48F-1D18A9856A87
  last_name: Hrtyan
- first_name: Jie
  full_name: Wang, Jie
  last_name: Wang
- first_name: Juan L
  full_name: Aguilera Servin, Juan L
  id: 2A67C376-F248-11E8-B48F-1D18A9856A87
  last_name: Aguilera Servin
  orcid: 0000-0002-2862-8372
- first_name: Daniël
  full_name: van Damme, Daniël
  last_name: van Damme
- first_name: Emmanuel
  full_name: Beaurepaire, Emmanuel
  last_name: Beaurepaire
- first_name: Martin
  full_name: Loose, Martin
  id: 462D4284-F248-11E8-B48F-1D18A9856A87
  last_name: Loose
  orcid: 0000-0001-7309-9724
- first_name: Sebastian Y
  full_name: Bednarek, Sebastian Y
  last_name: Bednarek
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Johnson AJ, Dahhan DA, Gnyliukh N, et al. The TPLATE complex mediates membrane
    bending during plant clathrin-mediated endocytosis. <i>Proceedings of the National
    Academy of Sciences of the United States of America</i>. 2021;118(51). doi:<a
    href="https://doi.org/10.1073/pnas.2113046118">10.1073/pnas.2113046118</a>
  apa: Johnson, A. J., Dahhan, D. A., Gnyliukh, N., Kaufmann, W., Zheden, V., Costanzo,
    T., … Friml, J. (2021). The TPLATE complex mediates membrane bending during plant
    clathrin-mediated endocytosis. <i>Proceedings of the National Academy of Sciences
    of the United States of America</i>. National Academy of Sciences. <a href="https://doi.org/10.1073/pnas.2113046118">https://doi.org/10.1073/pnas.2113046118</a>
  chicago: Johnson, Alexander J, Dana A Dahhan, Nataliia Gnyliukh, Walter Kaufmann,
    Vanessa Zheden, Tommaso Costanzo, Pierre Mahou, et al. “The TPLATE Complex Mediates
    Membrane Bending during Plant Clathrin-Mediated Endocytosis.” <i>Proceedings of
    the National Academy of Sciences of the United States of America</i>. National
    Academy of Sciences, 2021. <a href="https://doi.org/10.1073/pnas.2113046118">https://doi.org/10.1073/pnas.2113046118</a>.
  ieee: A. J. Johnson <i>et al.</i>, “The TPLATE complex mediates membrane bending
    during plant clathrin-mediated endocytosis,” <i>Proceedings of the National Academy
    of Sciences of the United States of America</i>, vol. 118, no. 51. National Academy
    of Sciences, 2021.
  ista: Johnson AJ, Dahhan DA, Gnyliukh N, Kaufmann W, Zheden V, Costanzo T, Mahou
    P, Hrtyan M, Wang J, Aguilera Servin JL, van Damme D, Beaurepaire E, Loose M,
    Bednarek SY, Friml J. 2021. The TPLATE complex mediates membrane bending during
    plant clathrin-mediated endocytosis. Proceedings of the National Academy of Sciences
    of the United States of America. 118(51), e2113046118.
  mla: Johnson, Alexander J., et al. “The TPLATE Complex Mediates Membrane Bending
    during Plant Clathrin-Mediated Endocytosis.” <i>Proceedings of the National Academy
    of Sciences of the United States of America</i>, vol. 118, no. 51, e2113046118,
    National Academy of Sciences, 2021, doi:<a href="https://doi.org/10.1073/pnas.2113046118">10.1073/pnas.2113046118</a>.
  short: A.J. Johnson, D.A. Dahhan, N. Gnyliukh, W. Kaufmann, V. Zheden, T. Costanzo,
    P. Mahou, M. Hrtyan, J. Wang, J.L. Aguilera Servin, D. van Damme, E. Beaurepaire,
    M. Loose, S.Y. Bednarek, J. Friml, Proceedings of the National Academy of Sciences
    of the United States of America 118 (2021).
corr_author: '1'
date_created: 2021-08-11T14:11:43Z
date_published: 2021-12-14T00:00:00Z
date_updated: 2026-08-21T22:30:53Z
day: '14'
ddc:
- '580'
department:
- _id: JiFr
- _id: MaLo
- _id: EvBe
- _id: EM-Fac
- _id: NanoFab
doi: 10.1073/pnas.2113046118
external_id:
  isi:
  - '000736417600043'
  pmid:
  - '34907016'
file:
- access_level: open_access
  checksum: 8d01e72e22c4fb1584e72d8601947069
  content_type: application/pdf
  creator: cchlebak
  date_created: 2021-12-15T08:59:40Z
  date_updated: 2021-12-15T08:59:40Z
  file_id: '10546'
  file_name: 2021_PNAS_Johnson.pdf
  file_size: 2757340
  relation: main_file
  success: 1
file_date_updated: 2021-12-15T08:59:40Z
has_accepted_license: '1'
intvolume: '       118'
isi: 1
issue: '51'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
publication: Proceedings of the National Academy of Sciences of the United States
  of America
publication_identifier:
  eissn:
  - 1091-6490
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
related_material:
  link:
  - relation: earlier_version
    url: https://doi.org/10.1101/2021.04.26.441441
  record:
  - id: '14988'
    relation: research_data
    status: public
  - id: '14510'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: The TPLATE complex mediates membrane bending during plant clathrin-mediated
  endocytosis
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 118
year: '2021'
...
---
_id: '9756'
abstract:
- lang: eng
  text: High-resolution visualization and quantification of membrane proteins contribute
    to the understanding of their functions and the roles they play in physiological
    and pathological conditions. Sodium dodecyl sulfate-digested freeze-fracture replica
    labeling (SDS-FRL) is a powerful electron microscopy method to study quantitatively
    the two-dimensional distribution of transmembrane proteins and their tightly associated
    proteins. During treatment with SDS, intracellular organelles and proteins not
    anchored to the replica are dissolved, whereas integral membrane proteins captured
    and stabilized by carbon/platinum deposition remain on the replica. Their intra-
    and extracellular domains become exposed on the surface of the replica, facilitating
    the accessibility of antibodies and, therefore, providing higher labeling efficiency
    than those obtained with other immunoelectron microscopy techniques. In this chapter,
    we describe the protocols of SDS-FRL adapted for mammalian brain samples, and
    optimization of the SDS treatment to increase the labeling efficiency for quantification
    of Cav2.1, the alpha subunit of P/Q-type voltage-dependent calcium channels utilizing
    deep learning algorithms.
acknowledgement: This work was supported by the European Union (European Research
  Council Advanced grant no. 694539 and Human Brain Project Ref. 720270 to R. S.)
  and the Austrian Academy of Sciences (DOC fellowship to D.K.).
alternative_title:
- Neuromethods
article_processing_charge: No
author:
- first_name: Walter
  full_name: Kaufmann, Walter
  id: 3F99E422-F248-11E8-B48F-1D18A9856A87
  last_name: Kaufmann
  orcid: 0000-0001-9735-5315
- first_name: David
  full_name: Kleindienst, David
  id: 42E121A4-F248-11E8-B48F-1D18A9856A87
  last_name: Kleindienst
- first_name: Harumi
  full_name: Harada, Harumi
  id: 2E55CDF2-F248-11E8-B48F-1D18A9856A87
  last_name: Harada
  orcid: 0000-0001-7429-7896
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
citation:
  ama: 'Kaufmann W, Kleindienst D, Harada H, Shigemoto R. High-Resolution localization
    and quantitation of membrane proteins by SDS-digested freeze-fracture replica
    labeling (SDS-FRL). In: <i>Receptor and Ion Channel Detection in the Brain</i>.
    Vol 169. Neuromethods. New York: Humana Press; 2021:267-283. doi:<a href="https://doi.org/10.1007/978-1-0716-1522-5_19">10.1007/978-1-0716-1522-5_19</a>'
  apa: 'Kaufmann, W., Kleindienst, D., Harada, H., &#38; Shigemoto, R. (2021). High-Resolution
    localization and quantitation of membrane proteins by SDS-digested freeze-fracture
    replica labeling (SDS-FRL). In <i>Receptor and Ion Channel Detection in the Brain</i>
    (Vol. 169, pp. 267–283). New York: Humana Press. <a href="https://doi.org/10.1007/978-1-0716-1522-5_19">https://doi.org/10.1007/978-1-0716-1522-5_19</a>'
  chicago: 'Kaufmann, Walter, David Kleindienst, Harumi Harada, and Ryuichi Shigemoto.
    “High-Resolution Localization and Quantitation of Membrane Proteins by SDS-Digested
    Freeze-Fracture Replica Labeling (SDS-FRL).” In <i>Receptor and Ion Channel Detection
    in the Brain</i>, 169:267–83. Neuromethods. New York: Humana Press, 2021. <a href="https://doi.org/10.1007/978-1-0716-1522-5_19">https://doi.org/10.1007/978-1-0716-1522-5_19</a>.'
  ieee: 'W. Kaufmann, D. Kleindienst, H. Harada, and R. Shigemoto, “High-Resolution
    localization and quantitation of membrane proteins by SDS-digested freeze-fracture
    replica labeling (SDS-FRL),” in <i>Receptor and Ion Channel Detection in the Brain</i>,
    vol. 169, New York: Humana Press, 2021, pp. 267–283.'
  ista: 'Kaufmann W, Kleindienst D, Harada H, Shigemoto R. 2021.High-Resolution localization
    and quantitation of membrane proteins by SDS-digested freeze-fracture replica
    labeling (SDS-FRL). In: Receptor and Ion Channel Detection in the Brain. Neuromethods,
    vol. 169, 267–283.'
  mla: Kaufmann, Walter, et al. “High-Resolution Localization and Quantitation of
    Membrane Proteins by SDS-Digested Freeze-Fracture Replica Labeling (SDS-FRL).”
    <i>Receptor and Ion Channel Detection in the Brain</i>, vol. 169, Humana Press,
    2021, pp. 267–83, doi:<a href="https://doi.org/10.1007/978-1-0716-1522-5_19">10.1007/978-1-0716-1522-5_19</a>.
  short: W. Kaufmann, D. Kleindienst, H. Harada, R. Shigemoto, in:, Receptor and Ion
    Channel Detection in the Brain, Humana Press, New York, 2021, pp. 267–283.
corr_author: '1'
das_tickbox: '1'
date_created: 2021-07-30T09:34:56Z
date_published: 2021-07-27T00:00:00Z
date_updated: 2026-08-21T22:31:04Z
day: '27'
ddc:
- '573'
department:
- _id: RySh
- _id: EM-Fac
doi: 10.1007/978-1-0716-1522-5_19
ec_funded: 1
has_accepted_license: '1'
intvolume: '       169'
keyword:
- 'Freeze-fracture replica: Deep learning'
- Immunogold labeling
- Integral membrane protein
- Electron microscopy
language:
- iso: eng
month: '07'
oa_version: None
page: 267-283
place: New York
project:
- _id: 25CA28EA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694539'
  name: 'In situ analysis of single channel subunit composition in neurons: physiological
    implication in synaptic plasticity and behaviour'
- _id: 25CBA828-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '720270'
  name: Human Brain Project Specific Grant Agreement 1
publication: Receptor and Ion Channel Detection in the Brain
publication_identifier:
  eisbn:
  - '9781071615225'
  isbn:
  - '9781071615218'
publication_status: published
publisher: Humana Press
quality_controlled: '1'
related_material:
  record:
  - id: '9562'
    relation: dissertation_contains
    status: public
scopus_import: '1'
series_title: Neuromethods
status: public
title: High-Resolution localization and quantitation of membrane proteins by SDS-digested
  freeze-fracture replica labeling (SDS-FRL)
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 169
year: '2021'
...
---
_id: '10110'
abstract:
- lang: eng
  text: Pattern separation is a fundamental brain computation that converts small
    differences in input patterns into large differences in output patterns. Several
    synaptic mechanisms of pattern separation have been proposed, including code expansion,
    inhibition and plasticity; however, which of these mechanisms play a role in the
    entorhinal cortex (EC)–dentate gyrus (DG)–CA3 circuit, a classical pattern separation
    circuit, remains unclear. Here we show that a biologically realistic, full-scale
    EC–DG–CA3 circuit model, including granule cells (GCs) and parvalbumin-positive
    inhibitory interneurons (PV+-INs) in the DG, is an efficient pattern separator.
    Both external gamma-modulated inhibition and internal lateral inhibition mediated
    by PV+-INs substantially contributed to pattern separation. Both local connectivity
    and fast signaling at GC–PV+-IN synapses were important for maximum effectiveness.
    Similarly, mossy fiber synapses with conditional detonator properties contributed
    to pattern separation. By contrast, perforant path synapses with Hebbian synaptic
    plasticity and direct EC–CA3 connection shifted the network towards pattern completion.
    Our results demonstrate that the specific properties of cells and synapses optimize
    higher-order computations in biological networks and might be useful to improve
    the deep learning capabilities of technical networks.
author:
- first_name: José
  full_name: Guzmán, José
  id: 30CC5506-F248-11E8-B48F-1D18A9856A87
  last_name: Guzmán
  orcid: 0000-0003-2209-5242
- first_name: Alois
  full_name: Schlögl, Alois
  id: 45BF87EE-F248-11E8-B48F-1D18A9856A87
  last_name: Schlögl
  orcid: 0000-0002-5621-8100
- first_name: 'Claudia '
  full_name: 'Espinoza Martinez, Claudia '
  id: 31FFEE2E-F248-11E8-B48F-1D18A9856A87
  last_name: Espinoza Martinez
  orcid: 0000-0003-4710-2082
- first_name: Xiaomin
  full_name: Zhang, Xiaomin
  id: 423EC9C2-F248-11E8-B48F-1D18A9856A87
  last_name: Zhang
  orcid: 0000-0003-0256-6529
- first_name: Benjamin
  full_name: Suter, Benjamin
  id: 4952F31E-F248-11E8-B48F-1D18A9856A87
  last_name: Suter
  orcid: 0000-0002-9885-6936
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
citation:
  ama: Guzmán J, Schlögl A, Espinoza Martinez C, Zhang X, Suter B, Jonas PM. How connectivity
    rules and synaptic properties shape the efficacy of pattern separation in the
    entorhinal cortex–dentate gyrus–CA3 network. 2021. doi:<a href="https://doi.org/10.15479/AT:ISTA:10110">10.15479/AT:ISTA:10110</a>
  apa: Guzmán, J., Schlögl, A., Espinoza Martinez, C., Zhang, X., Suter, B., &#38;
    Jonas, P. M. (2021). How connectivity rules and synaptic properties shape the
    efficacy of pattern separation in the entorhinal cortex–dentate gyrus–CA3 network.
    IST Austria. <a href="https://doi.org/10.15479/AT:ISTA:10110">https://doi.org/10.15479/AT:ISTA:10110</a>
  chicago: Guzmán, José, Alois Schlögl, Claudia  Espinoza Martinez, Xiaomin Zhang,
    Benjamin Suter, and Peter M Jonas. “How Connectivity Rules and Synaptic Properties
    Shape the Efficacy of Pattern Separation in the Entorhinal Cortex–Dentate Gyrus–CA3
    Network.” IST Austria, 2021. <a href="https://doi.org/10.15479/AT:ISTA:10110">https://doi.org/10.15479/AT:ISTA:10110</a>.
  ieee: J. Guzmán, A. Schlögl, C. Espinoza Martinez, X. Zhang, B. Suter, and P. M.
    Jonas, “How connectivity rules and synaptic properties shape the efficacy of pattern
    separation in the entorhinal cortex–dentate gyrus–CA3 network.” IST Austria, 2021.
  ista: Guzmán J, Schlögl A, Espinoza Martinez C, Zhang X, Suter B, Jonas PM. 2021.
    How connectivity rules and synaptic properties shape the efficacy of pattern separation
    in the entorhinal cortex–dentate gyrus–CA3 network, IST Austria, <a href="https://doi.org/10.15479/AT:ISTA:10110">10.15479/AT:ISTA:10110</a>.
  mla: Guzmán, José, et al. <i>How Connectivity Rules and Synaptic Properties Shape
    the Efficacy of Pattern Separation in the Entorhinal Cortex–Dentate Gyrus–CA3
    Network</i>. IST Austria, 2021, doi:<a href="https://doi.org/10.15479/AT:ISTA:10110">10.15479/AT:ISTA:10110</a>.
  short: J. Guzmán, A. Schlögl, C. Espinoza Martinez, X. Zhang, B. Suter, P.M. Jonas,
    (2021).
date_created: 2021-10-08T06:44:22Z
date_published: 2021-12-16T00:00:00Z
date_updated: 2026-08-21T22:31:04Z
day: '16'
ddc:
- '005'
department:
- _id: PeJo
- _id: ScienComp
doi: 10.15479/AT:ISTA:10110
file:
- access_level: open_access
  checksum: f92f8931cad0aa7e411c1715337bf408
  content_type: application/x-zip-compressed
  creator: cchlebak
  date_created: 2021-10-08T08:46:04Z
  date_updated: 2021-10-08T08:46:04Z
  file_id: '10114'
  file_name: patternseparation-main (1).zip
  file_size: 332990101
  relation: main_file
  success: 1
file_date_updated: 2021-10-08T08:46:04Z
has_accepted_license: '1'
month: '12'
oa: 1
publisher: IST Austria
related_material:
  link:
  - description: News on IST Webpage
    relation: press_release
    url: https://ist.ac.at/en/news/spot-the-difference/
  record:
  - id: '10816'
    relation: used_for_analysis_in
    status: public
status: public
title: How connectivity rules and synaptic properties shape the efficacy of pattern
  separation in the entorhinal cortex–dentate gyrus–CA3 network
tmp:
  legal_code_url: https://www.gnu.org/licenses/gpl-3.0.en.html
  name: GNU General Public License 3.0
  short: GPL 3.0
type: software
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2021'
...
---
_id: '10866'
abstract:
- lang: eng
  text: Recent discoveries have shown that, when two layers of van der Waals (vdW)
    materials are superimposed with a relative twist angle between them, the electronic
    properties of the coupled system can be dramatically altered. Here, we demonstrate
    that a similar concept can be extended to the optics realm, particularly to propagating
    phonon polaritons–hybrid light-matter interactions. To do this, we fabricate stacks
    composed of two twisted slabs of a vdW crystal (α-MoO3) supporting anisotropic
    phonon polaritons (PhPs), and image the propagation of the latter when launched
    by localized sources. Our images reveal that, under a critical angle, the PhPs
    isofrequency curve undergoes a topological transition, in which the propagation
    of PhPs is strongly guided (canalization regime) along predetermined directions
    without geometric spreading. These results demonstrate a new degree of freedom
    (twist angle) for controlling the propagation of polaritons at the nanoscale with
    potential for nanoimaging, (bio)-sensing, or heat management.
acknowledgement: "J.T.-G. and G.Á.-P. acknowledge support through the Severo Ochoa
  Program from the\r\nGovernment of the Principality of Asturias (nos. PA-18-PF-BP17-126
  and PA20-PF-BP19-053,\r\nrespectively). J. M-S acknowledges financial support through
  the Ramón y Cajal Program from\r\nthe Government of Spain (RYC2018-026196-I). A.Y.N.
  acknowledges the Spanish Ministry of\r\nScience, Innovation and Universities (national
  project no. MAT201788358-C3-3-R). P.A.-G.\r\nacknowledges support from the European
  Research Council under starting grant no. 715496,\r\n2DNANOPTICA."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jiahua
  full_name: Duan, Jiahua
  last_name: Duan
- first_name: Nathaniel
  full_name: Capote-Robayna, Nathaniel
  last_name: Capote-Robayna
- first_name: Javier
  full_name: Taboada-Gutiérrez, Javier
  last_name: Taboada-Gutiérrez
- first_name: Gonzalo
  full_name: Álvarez-Pérez, Gonzalo
  last_name: Álvarez-Pérez
- first_name: Ivan
  full_name: Prieto Gonzalez, Ivan
  id: 2A307FE2-F248-11E8-B48F-1D18A9856A87
  last_name: Prieto Gonzalez
  orcid: 0000-0002-7370-5357
- first_name: Javier
  full_name: Martín-Sánchez, Javier
  last_name: Martín-Sánchez
- first_name: Alexey Y.
  full_name: Nikitin, Alexey Y.
  last_name: Nikitin
- first_name: Pablo
  full_name: Alonso-González, Pablo
  last_name: Alonso-González
citation:
  ama: 'Duan J, Capote-Robayna N, Taboada-Gutiérrez J, et al. Twisted nano-optics:
    Manipulating light at the nanoscale with twisted phonon polaritonic slabs. <i>Nano
    Letters</i>. 2020;20(7):5323-5329. doi:<a href="https://doi.org/10.1021/acs.nanolett.0c01673">10.1021/acs.nanolett.0c01673</a>'
  apa: 'Duan, J., Capote-Robayna, N., Taboada-Gutiérrez, J., Álvarez-Pérez, G., Prieto
    Gonzalez, I., Martín-Sánchez, J., … Alonso-González, P. (2020). Twisted nano-optics:
    Manipulating light at the nanoscale with twisted phonon polaritonic slabs. <i>Nano
    Letters</i>. American Chemical Society. <a href="https://doi.org/10.1021/acs.nanolett.0c01673">https://doi.org/10.1021/acs.nanolett.0c01673</a>'
  chicago: 'Duan, Jiahua, Nathaniel Capote-Robayna, Javier Taboada-Gutiérrez, Gonzalo
    Álvarez-Pérez, Ivan Prieto Gonzalez, Javier Martín-Sánchez, Alexey Y. Nikitin,
    and Pablo Alonso-González. “Twisted Nano-Optics: Manipulating Light at the Nanoscale
    with Twisted Phonon Polaritonic Slabs.” <i>Nano Letters</i>. American Chemical
    Society, 2020. <a href="https://doi.org/10.1021/acs.nanolett.0c01673">https://doi.org/10.1021/acs.nanolett.0c01673</a>.'
  ieee: 'J. Duan <i>et al.</i>, “Twisted nano-optics: Manipulating light at the nanoscale
    with twisted phonon polaritonic slabs,” <i>Nano Letters</i>, vol. 20, no. 7. American
    Chemical Society, pp. 5323–5329, 2020.'
  ista: 'Duan J, Capote-Robayna N, Taboada-Gutiérrez J, Álvarez-Pérez G, Prieto Gonzalez
    I, Martín-Sánchez J, Nikitin AY, Alonso-González P. 2020. Twisted nano-optics:
    Manipulating light at the nanoscale with twisted phonon polaritonic slabs. Nano
    Letters. 20(7), 5323–5329.'
  mla: 'Duan, Jiahua, et al. “Twisted Nano-Optics: Manipulating Light at the Nanoscale
    with Twisted Phonon Polaritonic Slabs.” <i>Nano Letters</i>, vol. 20, no. 7, American
    Chemical Society, 2020, pp. 5323–29, doi:<a href="https://doi.org/10.1021/acs.nanolett.0c01673">10.1021/acs.nanolett.0c01673</a>.'
  short: J. Duan, N. Capote-Robayna, J. Taboada-Gutiérrez, G. Álvarez-Pérez, I. Prieto
    Gonzalez, J. Martín-Sánchez, A.Y. Nikitin, P. Alonso-González, Nano Letters 20
    (2020) 5323–5329.
date_created: 2022-03-18T11:37:38Z
date_published: 2020-07-01T00:00:00Z
date_updated: 2023-09-05T12:05:58Z
day: '01'
department:
- _id: NanoFab
doi: 10.1021/acs.nanolett.0c01673
external_id:
  arxiv:
  - '2004.14599'
  isi:
  - '000548893200082'
  pmid:
  - '32530634'
intvolume: '        20'
isi: 1
issue: '7'
keyword:
- Mechanical Engineering
- Condensed Matter Physics
- General Materials Science
- General Chemistry
- Bioengineering
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2004.14599
month: '07'
oa: 1
oa_version: Preprint
page: 5323-5329
pmid: 1
publication: Nano Letters
publication_identifier:
  eissn:
  - 1530-6992
  issn:
  - 1530-6984
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Twisted nano-optics: Manipulating light at the nanoscale with twisted phonon
  polaritonic slabs'
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 20
year: '2020'
...
---
_id: '15286'
article_processing_charge: No
article_type: original
author:
- first_name: Florian
  full_name: Fäßler, Florian
  id: 404F5528-F248-11E8-B48F-1D18A9856A87
  last_name: Fäßler
  orcid: 0000-0001-7149-769X
- first_name: Georgi A
  full_name: Dimchev, Georgi A
  id: 38C393BE-F248-11E8-B48F-1D18A9856A87
  last_name: Dimchev
  orcid: 0000-0001-8370-6161
- first_name: Victor-Valentin
  full_name: Hodirnau, Victor-Valentin
  id: 3661B498-F248-11E8-B48F-1D18A9856A87
  last_name: Hodirnau
  orcid: 0000-0003-3904-947X
- first_name: Bettina
  full_name: Zens, Bettina
  id: 45FD126C-F248-11E8-B48F-1D18A9856A87
  last_name: Zens
  orcid: 0000-0002-9561-1239
- first_name: Christoph
  full_name: Möhl, Christoph
  last_name: Möhl
- first_name: Frank
  full_name: Bradke, Frank
  last_name: Bradke
- first_name: Florian KM
  full_name: Schur, Florian KM
  id: 48AD8942-F248-11E8-B48F-1D18A9856A87
  last_name: Schur
  orcid: 0000-0003-4790-8078
citation:
  ama: Fäßler F, Dimchev GA, Hodirnau V-V, et al. Cryo-electron tomography workflows
    for quantitative analysis of actin networks involved in cell migration. <i>Microscopy
    and Microanalysis</i>. 2020;26(S2):2518-2519. doi:<a href="https://doi.org/10.1017/s1431927620021881">10.1017/s1431927620021881</a>
  apa: Fäßler, F., Dimchev, G. A., Hodirnau, V.-V., Zens, B., Möhl, C., Bradke, F.,
    &#38; Schur, F. K. (2020). Cryo-electron tomography workflows for quantitative
    analysis of actin networks involved in cell migration. <i>Microscopy and Microanalysis</i>.
    Oxford University Press. <a href="https://doi.org/10.1017/s1431927620021881">https://doi.org/10.1017/s1431927620021881</a>
  chicago: Fäßler, Florian, Georgi A Dimchev, Victor-Valentin Hodirnau, Bettina Zens,
    Christoph Möhl, Frank Bradke, and Florian KM Schur. “Cryo-Electron Tomography
    Workflows for Quantitative Analysis of Actin Networks Involved in Cell Migration.”
    <i>Microscopy and Microanalysis</i>. Oxford University Press, 2020. <a href="https://doi.org/10.1017/s1431927620021881">https://doi.org/10.1017/s1431927620021881</a>.
  ieee: F. Fäßler <i>et al.</i>, “Cryo-electron tomography workflows for quantitative
    analysis of actin networks involved in cell migration,” <i>Microscopy and Microanalysis</i>,
    vol. 26, no. S2. Oxford University Press, pp. 2518–2519, 2020.
  ista: Fäßler F, Dimchev GA, Hodirnau V-V, Zens B, Möhl C, Bradke F, Schur FK. 2020.
    Cryo-electron tomography workflows for quantitative analysis of actin networks
    involved in cell migration. Microscopy and Microanalysis. 26(S2), 2518–2519.
  mla: Fäßler, Florian, et al. “Cryo-Electron Tomography Workflows for Quantitative
    Analysis of Actin Networks Involved in Cell Migration.” <i>Microscopy and Microanalysis</i>,
    vol. 26, no. S2, Oxford University Press, 2020, pp. 2518–19, doi:<a href="https://doi.org/10.1017/s1431927620021881">10.1017/s1431927620021881</a>.
  short: F. Fäßler, G.A. Dimchev, V.-V. Hodirnau, B. Zens, C. Möhl, F. Bradke, F.K.
    Schur, Microscopy and Microanalysis 26 (2020) 2518–2519.
corr_author: '1'
date_created: 2024-04-03T09:40:11Z
date_published: 2020-08-01T00:00:00Z
date_updated: 2024-10-09T21:08:43Z
day: '01'
department:
- _id: FlSc
- _id: EM-Fac
doi: 10.1017/s1431927620021881
intvolume: '        26'
issue: S2
keyword:
- Instrumentation
language:
- iso: eng
month: '08'
oa_version: None
page: 2518-2519
publication: Microscopy and Microanalysis
publication_identifier:
  eissn:
  - 1435-8115
  issn:
  - 1431-9276
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
status: public
title: Cryo-electron tomography workflows for quantitative analysis of actin networks
  involved in cell migration
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 26
year: '2020'
...
---
_id: '7687'
abstract:
- lang: eng
  text: A working group, which was established within the Network of Repository Managers  (RepManNet),  has  dealt  with  common  certifications  for  repositories.  In
    addition,  current  requirements  of  the  research  funding  agencies  FWF  and  EU  were
    also taken into account. The Core Trust Seal was examined in more detail. For
    this purpose,  a  questionnaire  was  sent  to  those  organizations  that  are  already  certified
    with CTS in Austria. The answers were summarized and evaluated anonymously. It
    is recommended to go for a repository certification. Moreover, the development
    of a DINI certificate in Austria is strongly suggested.
- lang: ger
  text: ' Eine Arbeitsgruppe, die im Rahmen des Netzwerks für RepositorienmanagerInnen
    (RepManNet) entstanden ist, hat sich mit gängigen Zertifizierungen für Repositorien
    beschäftigt. Weiters wurden aktuelle Vorgaben der Forschungsförderer FWF und EU
    herangezogen. Das Core Trust Seal wurde genauer betrachtet. Hierfür  wurden jenen  Organisationen,  die  in  Österreich  bereits  mit  CTS  zertifiziert
    sind, ein Fragebogen übermittelt. Die Antworten wurden anonymisiert zusammengefasst
    und ausgewertet. Plädiert wird für eine Zertifizierung von Repositorien und die
    Entwicklung einer DINI-Zertifizierung in Österreich.'
article_processing_charge: No
article_type: original
author:
- first_name: Doris
  full_name: Ernst, Doris
  id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
  last_name: Ernst
  orcid: 0000-0002-2354-0195
- first_name: Gertraud
  full_name: Novotny, Gertraud
  last_name: Novotny
- first_name: Eva Maria
  full_name: Schönher, Eva Maria
  last_name: Schönher
citation:
  ama: Ernst D, Novotny G, Schönher EM. (Core Trust) Seal your repository! <i>Mitteilungen
    der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare</i>. 2020;73(1):46-59.
    doi:<a href="https://doi.org/10.31263/voebm.v73i1.3491">10.31263/voebm.v73i1.3491</a>
  apa: Ernst, D., Novotny, G., &#38; Schönher, E. M. (2020). (Core Trust) Seal your
    repository! <i>Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen
    und Bibliothekare</i>. Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare.
    <a href="https://doi.org/10.31263/voebm.v73i1.3491">https://doi.org/10.31263/voebm.v73i1.3491</a>
  chicago: Ernst, Doris, Gertraud Novotny, and Eva Maria Schönher. “(Core Trust) Seal
    your repository!” <i>Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen
    und Bibliothekare</i>. Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare,
    2020. <a href="https://doi.org/10.31263/voebm.v73i1.3491">https://doi.org/10.31263/voebm.v73i1.3491</a>.
  ieee: D. Ernst, G. Novotny, and E. M. Schönher, “(Core Trust) Seal your repository!,”
    <i>Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare</i>,
    vol. 73, no. 1. Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare,
    pp. 46–59, 2020.
  ista: Ernst D, Novotny G, Schönher EM. 2020. (Core Trust) Seal your repository!
    Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare.
    73(1), 46–59.
  mla: Ernst, Doris, et al. “(Core Trust) Seal your repository!” <i>Mitteilungen der
    Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare</i>, vol. 73,
    no. 1, Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare, 2020,
    pp. 46–59, doi:<a href="https://doi.org/10.31263/voebm.v73i1.3491">10.31263/voebm.v73i1.3491</a>.
  short: D. Ernst, G. Novotny, E.M. Schönher, Mitteilungen der Vereinigung Österreichischer
    Bibliothekarinnen und Bibliothekare 73 (2020) 46–59.
corr_author: '1'
date_created: 2020-04-28T08:37:38Z
date_published: 2020-04-28T00:00:00Z
date_updated: 2026-03-16T13:47:31Z
day: '28'
ddc:
- '020'
department:
- _id: E-Lib
doi: 10.31263/voebm.v73i1.3491
external_id:
  oaworkid:
  - W3021112752
file:
- access_level: open_access
  checksum: fee784f15a489deb7def6ccf8c5bf8c3
  content_type: application/pdf
  creator: dernst
  date_created: 2020-06-17T10:50:13Z
  date_updated: 2024-03-12T10:12:33Z
  file_id: '7970'
  file_name: 2020_VOEB_Ernst.pdf
  file_size: 579291
  relation: main_file
file_date_updated: 2024-03-12T10:12:33Z
has_accepted_license: '1'
intvolume: '        73'
issue: '1'
language:
- iso: ger
month: '04'
oa: 1
oa_version: Published Version
oaworkid: 1
page: 46-59
popular_science: '1'
publication: Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare
publication_identifier:
  issn:
  - 1022-2588
publication_status: published
publisher: Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare
scopus_import: '1'
status: public
title: (Core Trust) Seal your repository!
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 73
year: '2020'
...
---
OA_place: repository
OA_type: green
_id: '7792'
abstract:
- lang: eng
  text: Phonon polaritons—light coupled to lattice vibrations—in polar van der Waals
    crystals are promising candidates for controlling the flow of energy on the nanoscale
    due to their strong field confinement, anisotropic propagation and ultra-long
    lifetime in the picosecond range1,2,3,4,5. However, the lack of tunability of
    their narrow and material-specific spectral range—the Reststrahlen band—severely
    limits their technological implementation. Here, we demonstrate that intercalation
    of Na atoms in the van der Waals semiconductor α-V2O5 enables a broad spectral
    shift of Reststrahlen bands, and that the phonon polaritons excited show ultra-low
    losses (lifetime of 4 ± 1 ps), similar to phonon polaritons in a non-intercalated
    crystal (lifetime of 6 ± 1 ps). We expect our intercalation method to be applicable
    to other van der Waals crystals, opening the door for the use of phonon polaritons
    in broad spectral bands in the mid-infrared domain.
acknowledgement: J.T.-G. and G.Á.-P. acknowledge support through the Severo Ochoa
  Program from the Government of the Principality of Asturias (nos. PA-18-PF-BP17-126
  and PA-20-PF-BP19-053, respectively). J.M.-S. acknowledges finantial support from
  the Clarín Programme from the Government of the Principality of Asturias and a Marie
  Curie-COFUND grant (PA-18-ACB17-29) and the Ramón y Cajal Program from the Government
  of Spain (RYC2018-026196-I). K.C., X.P.A.G., H.V. and M.H.B. acknowledge the Air
  Force Office of Scientific Research (AFOSR) grant no. FA 9550-18-1-0030 for funding
  support. I.E. acknowledges financial support from the Spanish Ministry of Economy
  and Competitiveness (grant no. FIS2016-76617-P). A.Y.N. acknowledges the Spanish
  Ministry of Science, Innovation and Universities (national project no. MAT2017-88358-C3-3-R)
  and the Basque Government (grant no. IT1164-19). Q.B. acknowledges the support from
  Australian Research Council (grant nos. FT150100450, IH150100006 and CE170100039).
  R.H. acknowledges support from the Spanish Ministry of Economy, Industry, and Competitiveness
  (national project RTI2018-094830-B-100 and the Project MDM-2016-0618 of the María
  de Maeztu Units of Excellence Program) and the Basque Goverment (grant no. IT1164-19).
  P.A.-G. acknowledges support from the European Research Council under starting grant
  no. 715496, 2DNANOPTICA.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Javier
  full_name: Taboada-Gutiérrez, Javier
  last_name: Taboada-Gutiérrez
- first_name: Gonzalo
  full_name: Álvarez-Pérez, Gonzalo
  last_name: Álvarez-Pérez
- first_name: Jiahua
  full_name: Duan, Jiahua
  last_name: Duan
- first_name: Weiliang
  full_name: Ma, Weiliang
  last_name: Ma
- first_name: Kyle
  full_name: Crowley, Kyle
  last_name: Crowley
- first_name: Ivan
  full_name: Prieto Gonzalez, Ivan
  id: 2A307FE2-F248-11E8-B48F-1D18A9856A87
  last_name: Prieto Gonzalez
  orcid: 0000-0002-7370-5357
- first_name: Andrei
  full_name: Bylinkin, Andrei
  last_name: Bylinkin
- first_name: Marta
  full_name: Autore, Marta
  last_name: Autore
- first_name: Halyna
  full_name: Volkova, Halyna
  last_name: Volkova
- first_name: Kenta
  full_name: Kimura, Kenta
  last_name: Kimura
- first_name: Tsuyoshi
  full_name: Kimura, Tsuyoshi
  last_name: Kimura
- first_name: M. H.
  full_name: Berger, M. H.
  last_name: Berger
- first_name: Shaojuan
  full_name: Li, Shaojuan
  last_name: Li
- first_name: Qiaoliang
  full_name: Bao, Qiaoliang
  last_name: Bao
- first_name: Xuan P.A.
  full_name: Gao, Xuan P.A.
  last_name: Gao
- first_name: Ion
  full_name: Errea, Ion
  last_name: Errea
- first_name: Alexey Y.
  full_name: Nikitin, Alexey Y.
  last_name: Nikitin
- first_name: Rainer
  full_name: Hillenbrand, Rainer
  last_name: Hillenbrand
- first_name: Javier
  full_name: Martín-Sánchez, Javier
  last_name: Martín-Sánchez
- first_name: Pablo
  full_name: Alonso-González, Pablo
  last_name: Alonso-González
citation:
  ama: Taboada-Gutiérrez J, Álvarez-Pérez G, Duan J, et al. Broad spectral tuning
    of ultra-low-loss polaritons in a van der Waals crystal by intercalation. <i>Nature
    Materials</i>. 2020;19:964–968. doi:<a href="https://doi.org/10.1038/s41563-020-0665-0">10.1038/s41563-020-0665-0</a>
  apa: Taboada-Gutiérrez, J., Álvarez-Pérez, G., Duan, J., Ma, W., Crowley, K., Prieto
    Gonzalez, I., … Alonso-González, P. (2020). Broad spectral tuning of ultra-low-loss
    polaritons in a van der Waals crystal by intercalation. <i>Nature Materials</i>.
    Springer Nature. <a href="https://doi.org/10.1038/s41563-020-0665-0">https://doi.org/10.1038/s41563-020-0665-0</a>
  chicago: Taboada-Gutiérrez, Javier, Gonzalo Álvarez-Pérez, Jiahua Duan, Weiliang
    Ma, Kyle Crowley, Ivan Prieto Gonzalez, Andrei Bylinkin, et al. “Broad Spectral
    Tuning of Ultra-Low-Loss Polaritons in a van Der Waals Crystal by Intercalation.”
    <i>Nature Materials</i>. Springer Nature, 2020. <a href="https://doi.org/10.1038/s41563-020-0665-0">https://doi.org/10.1038/s41563-020-0665-0</a>.
  ieee: J. Taboada-Gutiérrez <i>et al.</i>, “Broad spectral tuning of ultra-low-loss
    polaritons in a van der Waals crystal by intercalation,” <i>Nature Materials</i>,
    vol. 19. Springer Nature, pp. 964–968, 2020.
  ista: Taboada-Gutiérrez J, Álvarez-Pérez G, Duan J, Ma W, Crowley K, Prieto Gonzalez
    I, Bylinkin A, Autore M, Volkova H, Kimura K, Kimura T, Berger MH, Li S, Bao Q,
    Gao XPA, Errea I, Nikitin AY, Hillenbrand R, Martín-Sánchez J, Alonso-González
    P. 2020. Broad spectral tuning of ultra-low-loss polaritons in a van der Waals
    crystal by intercalation. Nature Materials. 19, 964–968.
  mla: Taboada-Gutiérrez, Javier, et al. “Broad Spectral Tuning of Ultra-Low-Loss
    Polaritons in a van Der Waals Crystal by Intercalation.” <i>Nature Materials</i>,
    vol. 19, Springer Nature, 2020, pp. 964–968, doi:<a href="https://doi.org/10.1038/s41563-020-0665-0">10.1038/s41563-020-0665-0</a>.
  short: J. Taboada-Gutiérrez, G. Álvarez-Pérez, J. Duan, W. Ma, K. Crowley, I. Prieto
    Gonzalez, A. Bylinkin, M. Autore, H. Volkova, K. Kimura, T. Kimura, M.H. Berger,
    S. Li, Q. Bao, X.P.A. Gao, I. Errea, A.Y. Nikitin, R. Hillenbrand, J. Martín-Sánchez,
    P. Alonso-González, Nature Materials 19 (2020) 964–968.
date_created: 2020-05-03T22:00:49Z
date_published: 2020-09-01T00:00:00Z
date_updated: 2025-04-23T14:24:58Z
day: '01'
department:
- _id: NanoFab
doi: 10.1038/s41563-020-0665-0
external_id:
  arxiv:
  - '2501.08705'
  isi:
  - '000526218500004'
  pmid:
  - '32284598'
intvolume: '        19'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2501.08705
month: '09'
oa: 1
oa_version: Preprint
page: 964–968
pmid: 1
publication: Nature Materials
publication_identifier:
  eissn:
  - 1476-4660
  issn:
  - 1476-1122
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Broad spectral tuning of ultra-low-loss polaritons in a van der Waals crystal
  by intercalation
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 19
year: '2020'
...
---
_id: '7864'
abstract:
- lang: eng
  text: "Purpose of review: Cancer is one of the leading causes of death and the incidence
    rates are constantly rising. The heterogeneity of tumors poses a big challenge
    for the treatment of the disease and natural antibodies additionally affect disease
    progression. The introduction of engineered mAbs for anticancer immunotherapies
    has substantially improved progression-free and overall survival of cancer patients,
    but little efforts have been made to exploit other antibody isotypes than IgG.\r\nRecent
    findings: In order to improve these therapies, ‘next-generation antibodies’ were
    engineered to enhance a specific feature of classical antibodies and form a group
    of highly effective and precise therapy compounds. Advanced antibody approaches
    include among others antibody-drug conjugates, glyco-engineered and Fc-engineered
    antibodies, antibody fragments, radioimmunotherapy compounds, bispecific antibodies
    and alternative (non-IgG) immunoglobulin classes, especially IgE.\r\nSummary:
    The current review describes solutions for the needs of next-generation antibody
    therapies through different approaches. Careful selection of the best-suited engineering
    methodology is a key factor in developing personalized, more specific and more
    efficient mAbs against cancer to improve the outcomes of cancer patients. We highlight
    here the large evidence of IgE exploiting a highly cytotoxic effector arm as potential
    next-generation anticancer immunotherapy."
article_processing_charge: No
article_type: original
author:
- first_name: Judit
  full_name: Singer, Judit
  id: 36432834-F248-11E8-B48F-1D18A9856A87
  last_name: Singer
  orcid: 0000-0002-8777-3502
- first_name: Josef
  full_name: Singer, Josef
  last_name: Singer
- first_name: Erika
  full_name: Jensen-Jarolim, Erika
  last_name: Jensen-Jarolim
citation:
  ama: 'Singer J, Singer J, Jensen-Jarolim E. Precision medicine in clinical oncology:
    the journey from IgG antibody to IgE. <i>Current opinion in allergy and clinical
    immunology</i>. 2020;20(3):282-289. doi:<a href="https://doi.org/10.1097/ACI.0000000000000637">10.1097/ACI.0000000000000637</a>'
  apa: 'Singer, J., Singer, J., &#38; Jensen-Jarolim, E. (2020). Precision medicine
    in clinical oncology: the journey from IgG antibody to IgE. <i>Current Opinion
    in Allergy and Clinical Immunology</i>. Wolters Kluwer. <a href="https://doi.org/10.1097/ACI.0000000000000637">https://doi.org/10.1097/ACI.0000000000000637</a>'
  chicago: 'Singer, Judit, Josef Singer, and Erika Jensen-Jarolim. “Precision Medicine
    in Clinical Oncology: The Journey from IgG Antibody to IgE.” <i>Current Opinion
    in Allergy and Clinical Immunology</i>. Wolters Kluwer, 2020. <a href="https://doi.org/10.1097/ACI.0000000000000637">https://doi.org/10.1097/ACI.0000000000000637</a>.'
  ieee: 'J. Singer, J. Singer, and E. Jensen-Jarolim, “Precision medicine in clinical
    oncology: the journey from IgG antibody to IgE,” <i>Current opinion in allergy
    and clinical immunology</i>, vol. 20, no. 3. Wolters Kluwer, pp. 282–289, 2020.'
  ista: 'Singer J, Singer J, Jensen-Jarolim E. 2020. Precision medicine in clinical
    oncology: the journey from IgG antibody to IgE. Current opinion in allergy and
    clinical immunology. 20(3), 282–289.'
  mla: 'Singer, Judit, et al. “Precision Medicine in Clinical Oncology: The Journey
    from IgG Antibody to IgE.” <i>Current Opinion in Allergy and Clinical Immunology</i>,
    vol. 20, no. 3, Wolters Kluwer, 2020, pp. 282–89, doi:<a href="https://doi.org/10.1097/ACI.0000000000000637">10.1097/ACI.0000000000000637</a>.'
  short: J. Singer, J. Singer, E. Jensen-Jarolim, Current Opinion in Allergy and Clinical
    Immunology 20 (2020) 282–289.
date_created: 2020-05-17T22:00:44Z
date_published: 2020-06-01T00:00:00Z
date_updated: 2023-08-21T06:28:52Z
day: '01'
department:
- _id: Bio
doi: 10.1097/ACI.0000000000000637
external_id:
  isi:
  - '000561358300010'
intvolume: '        20'
isi: 1
issue: '3'
language:
- iso: eng
month: '06'
oa_version: None
page: 282-289
publication: Current opinion in allergy and clinical immunology
publication_identifier:
  eissn:
  - '14736322'
publication_status: published
publisher: Wolters Kluwer
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Precision medicine in clinical oncology: the journey from IgG antibody to
  IgE'
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 20
year: '2020'
...
---
_id: '7875'
abstract:
- lang: eng
  text: 'Cells navigating through complex tissues face a fundamental challenge: while
    multiple protrusions explore different paths, the cell needs to avoid entanglement.
    How a cell surveys and then corrects its own shape is poorly understood. Here,
    we demonstrate that spatially distinct microtubule dynamics regulate amoeboid
    cell migration by locally promoting the retraction of protrusions. In migrating
    dendritic cells, local microtubule depolymerization within protrusions remote
    from the microtubule organizing center triggers actomyosin contractility controlled
    by RhoA and its exchange factor Lfc. Depletion of Lfc leads to aberrant myosin
    localization, thereby causing two effects that rate-limit locomotion: (1) impaired
    cell edge coordination during path finding and (2) defective adhesion resolution.
    Compromised shape control is particularly hindering in geometrically complex microenvironments,
    where it leads to entanglement and ultimately fragmentation of the cell body.
    We thus demonstrate that microtubules can act as a proprioceptive device: they
    sense cell shape and control actomyosin retraction to sustain cellular coherence.'
acknowledged_ssus:
- _id: LifeSc
- _id: Bio
- _id: PreCl
acknowledgement: "The authors thank the Scientific Service Units (Life Sciences, Bioimaging,
  Preclinical) of the Institute of Science and Technology Austria for excellent support.
  This work was funded by the European Research Council (ERC StG 281556 and CoG 724373),
  two grants from the Austrian\r\nScience Fund (FWF; P29911 and DK Nanocell W1250-B20
  to M. Sixt) and by the German Research Foundation (DFG SFB1032 project B09) to O.
  Thorn-Seshold and D. Trauner. J. Renkawitz was supported by ISTFELLOW funding from
  the People Program (Marie Curie Actions) of the European Union’s Seventh Framework
  Programme (FP7/2007-2013) under the Research Executive Agency grant agreement (291734)
  and a European Molecular Biology Organization long-term fellowship (ALTF 1396-2014)
  co-funded by the European Commission (LTFCOFUND2013, GA-2013-609409), E. Kiermaier
  by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany’s
  Excellence Strategy—EXC 2151—390873048, and H. Hacker by the American Lebanese Syrian
  Associated ¨Charities. K.-D. Fischer was supported by the Analysis, Imaging and
  Modelling of Neuronal and Inflammatory Processes graduate school funded by the Ministry
  of Economics, Science, and Digitisation of the State Saxony-Anhalt and by the European
  Funds for Social and Regional Development."
article_number: e201907154
article_processing_charge: No
article_type: original
author:
- first_name: Aglaja
  full_name: Kopf, Aglaja
  id: 31DAC7B6-F248-11E8-B48F-1D18A9856A87
  last_name: Kopf
  orcid: 0000-0002-2187-6656
- first_name: Jörg
  full_name: Renkawitz, Jörg
  id: 3F0587C8-F248-11E8-B48F-1D18A9856A87
  last_name: Renkawitz
  orcid: 0000-0003-2856-3369
- first_name: Robert
  full_name: Hauschild, Robert
  id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
  last_name: Hauschild
  orcid: 0000-0001-9843-3522
- first_name: Irute
  full_name: Girkontaite, Irute
  last_name: Girkontaite
- first_name: Kerry
  full_name: Tedford, Kerry
  last_name: Tedford
- first_name: Jack
  full_name: Merrin, Jack
  id: 4515C308-F248-11E8-B48F-1D18A9856A87
  last_name: Merrin
  orcid: 0000-0001-5145-4609
- first_name: Oliver
  full_name: Thorn-Seshold, Oliver
  last_name: Thorn-Seshold
- first_name: Dirk
  full_name: Trauner, Dirk
  id: E8F27F48-3EBA-11E9-92A1-B709E6697425
  last_name: Trauner
- first_name: Hans
  full_name: Häcker, Hans
  last_name: Häcker
- first_name: Klaus Dieter
  full_name: Fischer, Klaus Dieter
  last_name: Fischer
- first_name: Eva
  full_name: Kiermaier, Eva
  id: 3EB04B78-F248-11E8-B48F-1D18A9856A87
  last_name: Kiermaier
  orcid: 0000-0001-6165-5738
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
citation:
  ama: Kopf A, Renkawitz J, Hauschild R, et al. Microtubules control cellular shape
    and coherence in amoeboid migrating cells. <i>The Journal of Cell Biology</i>.
    2020;219(6). doi:<a href="https://doi.org/10.1083/jcb.201907154">10.1083/jcb.201907154</a>
  apa: Kopf, A., Renkawitz, J., Hauschild, R., Girkontaite, I., Tedford, K., Merrin,
    J., … Sixt, M. K. (2020). Microtubules control cellular shape and coherence in
    amoeboid migrating cells. <i>The Journal of Cell Biology</i>. Rockefeller University
    Press. <a href="https://doi.org/10.1083/jcb.201907154">https://doi.org/10.1083/jcb.201907154</a>
  chicago: Kopf, Aglaja, Jörg Renkawitz, Robert Hauschild, Irute Girkontaite, Kerry
    Tedford, Jack Merrin, Oliver Thorn-Seshold, et al. “Microtubules Control Cellular
    Shape and Coherence in Amoeboid Migrating Cells.” <i>The Journal of Cell Biology</i>.
    Rockefeller University Press, 2020. <a href="https://doi.org/10.1083/jcb.201907154">https://doi.org/10.1083/jcb.201907154</a>.
  ieee: A. Kopf <i>et al.</i>, “Microtubules control cellular shape and coherence
    in amoeboid migrating cells,” <i>The Journal of Cell Biology</i>, vol. 219, no.
    6. Rockefeller University Press, 2020.
  ista: Kopf A, Renkawitz J, Hauschild R, Girkontaite I, Tedford K, Merrin J, Thorn-Seshold
    O, Trauner D, Häcker H, Fischer KD, Kiermaier E, Sixt MK. 2020. Microtubules control
    cellular shape and coherence in amoeboid migrating cells. The Journal of Cell
    Biology. 219(6), e201907154.
  mla: Kopf, Aglaja, et al. “Microtubules Control Cellular Shape and Coherence in
    Amoeboid Migrating Cells.” <i>The Journal of Cell Biology</i>, vol. 219, no. 6,
    e201907154, Rockefeller University Press, 2020, doi:<a href="https://doi.org/10.1083/jcb.201907154">10.1083/jcb.201907154</a>.
  short: A. Kopf, J. Renkawitz, R. Hauschild, I. Girkontaite, K. Tedford, J. Merrin,
    O. Thorn-Seshold, D. Trauner, H. Häcker, K.D. Fischer, E. Kiermaier, M.K. Sixt,
    The Journal of Cell Biology 219 (2020).
corr_author: '1'
date_created: 2020-05-24T22:00:56Z
date_published: 2020-06-01T00:00:00Z
date_updated: 2025-04-14T13:10:03Z
day: '01'
ddc:
- '570'
department:
- _id: MiSi
- _id: Bio
- _id: NanoFab
doi: 10.1083/jcb.201907154
ec_funded: 1
external_id:
  isi:
  - '000538141100020'
  pmid:
  - '32379884'
file:
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  creator: dernst
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has_accepted_license: '1'
intvolume: '       219'
isi: 1
issue: '6'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 25A603A2-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '281556'
  name: Cytoskeletal force generation and force transduction of migrating leukocytes
- _id: 25FE9508-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '724373'
  name: Cellular Navigation Along Spatial Gradients
- _id: 26018E70-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P29911
  name: Mechanical adaptation of lamellipodial actin
- _id: 252C3B08-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: W1250-B20
  name: Nano-Analytics of Cellular Systems
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
- _id: 25A48D24-B435-11E9-9278-68D0E5697425
  grant_number: ALTF 1396-2014
  name: Molecular and system level view of immune cell migration
publication: The Journal of Cell Biology
publication_identifier:
  eissn:
  - 1540-8140
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Microtubules control cellular shape and coherence in amoeboid migrating cells
tmp:
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type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 219
year: '2020'
...
---
_id: '8181'
author:
- first_name: Robert
  full_name: Hauschild, Robert
  id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
  last_name: Hauschild
  orcid: 0000-0001-9843-3522
citation:
  ama: Hauschild R. Amplified centrosomes in dendritic cells promote immune cell effector
    functions. 2020. doi:<a href="https://doi.org/10.15479/AT:ISTA:8181">10.15479/AT:ISTA:8181</a>
  apa: Hauschild, R. (2020). Amplified centrosomes in dendritic cells promote immune
    cell effector functions. IST Austria. <a href="https://doi.org/10.15479/AT:ISTA:8181">https://doi.org/10.15479/AT:ISTA:8181</a>
  chicago: Hauschild, Robert. “Amplified Centrosomes in Dendritic Cells Promote Immune
    Cell Effector Functions.” IST Austria, 2020. <a href="https://doi.org/10.15479/AT:ISTA:8181">https://doi.org/10.15479/AT:ISTA:8181</a>.
  ieee: R. Hauschild, “Amplified centrosomes in dendritic cells promote immune cell
    effector functions.” IST Austria, 2020.
  ista: Hauschild R. 2020. Amplified centrosomes in dendritic cells promote immune
    cell effector functions, IST Austria, <a href="https://doi.org/10.15479/AT:ISTA:8181">10.15479/AT:ISTA:8181</a>.
  mla: Hauschild, Robert. <i>Amplified Centrosomes in Dendritic Cells Promote Immune
    Cell Effector Functions</i>. IST Austria, 2020, doi:<a href="https://doi.org/10.15479/AT:ISTA:8181">10.15479/AT:ISTA:8181</a>.
  short: R. Hauschild, (2020).
corr_author: '1'
date_created: 2020-07-28T16:24:37Z
date_published: 2020-08-24T00:00:00Z
date_updated: 2024-10-09T21:05:14Z
day: '24'
department:
- _id: Bio
doi: 10.15479/AT:ISTA:8181
file:
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  checksum: 878c60885ce30afb59a884dd5eef451c
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  date_created: 2020-08-24T15:43:49Z
  date_updated: 2020-08-24T15:43:49Z
  file_id: '8290'
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  file_id: '8291'
  file_name: goTracking.m
  file_size: 2680
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file_date_updated: 2020-08-24T15:43:52Z
has_accepted_license: '1'
month: '08'
oa: 1
publisher: IST Austria
status: public
title: Amplified centrosomes in dendritic cells promote immune cell effector functions
tmp:
  legal_code_url: https://opensource.org/licenses/BSD-3-Clause
  name: The 3-Clause BSD License
  short: 3-Clause BSD
type: software
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '8261'
abstract:
- lang: eng
  text: Dentate gyrus granule cells (GCs) connect the entorhinal cortex to the hippocampal
    CA3 region, but how they process spatial information remains enigmatic. To examine
    the role of GCs in spatial coding, we measured excitatory postsynaptic potentials
    (EPSPs) and action potentials (APs) in head-fixed mice running on a linear belt.
    Intracellular recording from morphologically identified GCs revealed that most
    cells were active, but activity level varied over a wide range. Whereas only ∼5%
    of GCs showed spatially tuned spiking, ∼50% received spatially tuned input. Thus,
    the GC population broadly encodes spatial information, but only a subset relays
    this information to the CA3 network. Fourier analysis indicated that GCs received
    conjunctive place-grid-like synaptic input, suggesting code conversion in single
    neurons. GC firing was correlated with dendritic complexity and intrinsic excitability,
    but not extrinsic excitatory input or dendritic cable properties. Thus, functional
    maturation may control input-output transformation and spatial code conversion.
acknowledged_ssus:
- _id: M-Shop
- _id: ScienComp
- _id: PreCl
acknowledgement: This project has received funding from the European Research Council
  (ERC) under the European Union’s Horizon 2020 research and innovation program (grant
  agreement 692692, P.J.) and the Fond zur Förderung der Wissenschaftlichen Forschung
  (Z 312-B27, Wittgenstein award, P.J.). We thank Gyorgy Buzsáki, Jozsef Csicsvari,
  Juan Ramirez Villegas, and Federico Stella for commenting on earlier versions of
  this manuscript. We also thank Katie Bittner, Michael Brecht, Albert Lee, Jeffery
  Magee, and Alejandro Pernía-Andrade for sharing expertise in in vivo patch-clamp
  recording. We are grateful to Florian Marr for cell labeling, cell reconstruction,
  and technical assistance; Ben Suter for helpful discussions; Christina Altmutter
  for technical support; Eleftheria Kralli-Beller for manuscript editing; and Todor
  Asenov (Machine Shop) for device construction. We also thank the Scientific Service
  Units (SSUs) of IST Austria (Machine Shop, Scientific Computing, and Preclinical
  Facility) for efficient support.
article_processing_charge: No
article_type: original
author:
- first_name: Xiaomin
  full_name: Zhang, Xiaomin
  id: 423EC9C2-F248-11E8-B48F-1D18A9856A87
  last_name: Zhang
- first_name: Alois
  full_name: Schlögl, Alois
  id: 45BF87EE-F248-11E8-B48F-1D18A9856A87
  last_name: Schlögl
  orcid: 0000-0002-5621-8100
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
citation:
  ama: Zhang X, Schlögl A, Jonas PM. Selective routing of spatial information flow
    from input to output in hippocampal granule cells. <i>Neuron</i>. 2020;107(6):1212-1225.
    doi:<a href="https://doi.org/10.1016/j.neuron.2020.07.006">10.1016/j.neuron.2020.07.006</a>
  apa: Zhang, X., Schlögl, A., &#38; Jonas, P. M. (2020). Selective routing of spatial
    information flow from input to output in hippocampal granule cells. <i>Neuron</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.neuron.2020.07.006">https://doi.org/10.1016/j.neuron.2020.07.006</a>
  chicago: Zhang, Xiaomin, Alois Schlögl, and Peter M Jonas. “Selective Routing of
    Spatial Information Flow from Input to Output in Hippocampal Granule Cells.” <i>Neuron</i>.
    Elsevier, 2020. <a href="https://doi.org/10.1016/j.neuron.2020.07.006">https://doi.org/10.1016/j.neuron.2020.07.006</a>.
  ieee: X. Zhang, A. Schlögl, and P. M. Jonas, “Selective routing of spatial information
    flow from input to output in hippocampal granule cells,” <i>Neuron</i>, vol. 107,
    no. 6. Elsevier, pp. 1212–1225, 2020.
  ista: Zhang X, Schlögl A, Jonas PM. 2020. Selective routing of spatial information
    flow from input to output in hippocampal granule cells. Neuron. 107(6), 1212–1225.
  mla: Zhang, Xiaomin, et al. “Selective Routing of Spatial Information Flow from
    Input to Output in Hippocampal Granule Cells.” <i>Neuron</i>, vol. 107, no. 6,
    Elsevier, 2020, pp. 1212–25, doi:<a href="https://doi.org/10.1016/j.neuron.2020.07.006">10.1016/j.neuron.2020.07.006</a>.
  short: X. Zhang, A. Schlögl, P.M. Jonas, Neuron 107 (2020) 1212–1225.
corr_author: '1'
date_created: 2020-08-14T09:36:05Z
date_published: 2020-09-23T00:00:00Z
date_updated: 2025-04-15T08:29:03Z
day: '23'
ddc:
- '570'
department:
- _id: PeJo
- _id: ScienComp
doi: 10.1016/j.neuron.2020.07.006
ec_funded: 1
external_id:
  isi:
  - '000579698700009'
  pmid:
  - '32763145'
file:
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intvolume: '       107'
isi: 1
issue: '6'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 1212-1225
pmid: 1
project:
- _id: 25B7EB9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '692692'
  name: Biophysics and circuit function of a giant cortical glutamatergic synapse
- _id: 25C5A090-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00312
  name: Synaptic communication in neuronal microcircuits
publication: Neuron
publication_identifier:
  issn:
  - 0896-6273
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Website
    relation: press_release
    url: https://ist.ac.at/en/news/the-bouncer-in-the-brain/
scopus_import: '1'
status: public
title: Selective routing of spatial information flow from input to output in hippocampal
  granule cells
tmp:
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  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 107
year: '2020'
...
---
_id: '8294'
abstract:
- lang: eng
  text: 'Automated root growth analysis and tracking of root tips. '
author:
- first_name: Robert
  full_name: Hauschild, Robert
  id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
  last_name: Hauschild
  orcid: 0000-0001-9843-3522
citation:
  ama: Hauschild R. RGtracker. 2020. doi:<a href="https://doi.org/10.15479/AT:ISTA:8294">10.15479/AT:ISTA:8294</a>
  apa: Hauschild, R. (2020). RGtracker. IST Austria. <a href="https://doi.org/10.15479/AT:ISTA:8294">https://doi.org/10.15479/AT:ISTA:8294</a>
  chicago: Hauschild, Robert. “RGtracker.” IST Austria, 2020. <a href="https://doi.org/10.15479/AT:ISTA:8294">https://doi.org/10.15479/AT:ISTA:8294</a>.
  ieee: R. Hauschild, “RGtracker.” IST Austria, 2020.
  ista: Hauschild R. 2020. RGtracker, IST Austria, <a href="https://doi.org/10.15479/AT:ISTA:8294">10.15479/AT:ISTA:8294</a>.
  mla: Hauschild, Robert. <i>RGtracker</i>. IST Austria, 2020, doi:<a href="https://doi.org/10.15479/AT:ISTA:8294">10.15479/AT:ISTA:8294</a>.
  short: R. Hauschild, (2020).
corr_author: '1'
date_created: 2020-08-25T12:52:48Z
date_published: 2020-09-10T00:00:00Z
date_updated: 2024-10-09T21:05:14Z
day: '10'
ddc:
- '570'
department:
- _id: Bio
doi: 10.15479/AT:ISTA:8294
file:
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  date_updated: 2020-09-08T14:26:31Z
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  creator: rhauschild
  date_created: 2020-09-08T14:26:33Z
  date_updated: 2020-09-08T14:26:33Z
  file_id: '8347'
  file_name: RGtracker.mlappinstall
  file_size: 246121
  relation: main_file
  success: 1
file_date_updated: 2020-09-08T14:26:33Z
has_accepted_license: '1'
month: '09'
oa: 1
publisher: IST Austria
status: public
title: RGtracker
tmp:
  legal_code_url: https://opensource.org/licenses/BSD-3-Clause
  name: The 3-Clause BSD License
  short: 3-Clause BSD
type: software
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '8597'
abstract:
- lang: eng
  text: Error analysis and data visualization of positive COVID-19 cases in 27 countries
    have been performed up to August 8, 2020. This survey generally observes a progression
    from early exponential growth transitioning to an intermediate power-law growth
    phase, as recently suggested by Ziff and Ziff. The occurrence of logistic growth
    after the power-law phase with lockdowns or social distancing may be described
    as an effect of avoidance. A visualization of the power-law growth exponent over
    short time windows is qualitatively similar to the Bhatia visualization for pandemic
    progression. Visualizations like these can indicate the onset of second waves
    and may influence social policy.
acknowledgement: I would especially like to thank Michael Sixt for encouraging me
  to think about these problems while working at home due to restrictions in place.
  I want to thank Nick Barton, Katka Bodova, Matthew Robinson, Simon Rella, Federico
  Sau, Ivan Prieto, and Pradeep Kumar for useful discussions.
article_number: '065005'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Jack
  full_name: Merrin, Jack
  id: 4515C308-F248-11E8-B48F-1D18A9856A87
  last_name: Merrin
  orcid: 0000-0001-5145-4609
citation:
  ama: Merrin J. Differences in power law growth over time and indicators of COVID-19
    pandemic progression worldwide. <i>Physical Biology</i>. 2020;17(6). doi:<a href="https://doi.org/10.1088/1478-3975/abb2db">10.1088/1478-3975/abb2db</a>
  apa: Merrin, J. (2020). Differences in power law growth over time and indicators
    of COVID-19 pandemic progression worldwide. <i>Physical Biology</i>. IOP Publishing.
    <a href="https://doi.org/10.1088/1478-3975/abb2db">https://doi.org/10.1088/1478-3975/abb2db</a>
  chicago: Merrin, Jack. “Differences in Power Law Growth over Time and Indicators
    of COVID-19 Pandemic Progression Worldwide.” <i>Physical Biology</i>. IOP Publishing,
    2020. <a href="https://doi.org/10.1088/1478-3975/abb2db">https://doi.org/10.1088/1478-3975/abb2db</a>.
  ieee: J. Merrin, “Differences in power law growth over time and indicators of COVID-19
    pandemic progression worldwide,” <i>Physical Biology</i>, vol. 17, no. 6. IOP
    Publishing, 2020.
  ista: Merrin J. 2020. Differences in power law growth over time and indicators of
    COVID-19 pandemic progression worldwide. Physical Biology. 17(6), 065005.
  mla: Merrin, Jack. “Differences in Power Law Growth over Time and Indicators of
    COVID-19 Pandemic Progression Worldwide.” <i>Physical Biology</i>, vol. 17, no.
    6, 065005, IOP Publishing, 2020, doi:<a href="https://doi.org/10.1088/1478-3975/abb2db">10.1088/1478-3975/abb2db</a>.
  short: J. Merrin, Physical Biology 17 (2020).
corr_author: '1'
date_created: 2020-10-04T22:01:35Z
date_published: 2020-09-23T00:00:00Z
date_updated: 2026-04-02T14:29:42Z
day: '23'
ddc:
- '510'
- '570'
department:
- _id: NanoFab
doi: 10.1088/1478-3975/abb2db
external_id:
  isi:
  - '000575539700001'
file:
- access_level: open_access
  checksum: fec9bdd355ed349f09990faab20838a7
  content_type: application/pdf
  creator: dernst
  date_created: 2020-10-05T13:53:59Z
  date_updated: 2020-10-05T13:53:59Z
  file_id: '8609'
  file_name: 2020_PhysBio_Merrin.pdf
  file_size: 1667111
  relation: main_file
  success: 1
file_date_updated: 2020-10-05T13:53:59Z
has_accepted_license: '1'
intvolume: '        17'
isi: 1
issue: '6'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
publication: Physical Biology
publication_identifier:
  eissn:
  - 1478-3975
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Differences in power law growth over time and indicators of COVID-19 pandemic
  progression worldwide
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 17
year: '2020'
...
---
_id: '8695'
abstract:
- lang: eng
  text: A look at international activities on Open Science reveals a broad spectrum
    from individual institutional policies to national action plans. The present Recommendations
    for a National Open Science Strategy in Austria are based on these international
    initiatives and present practical considerations for their coordinated implementation
    with regard to strategic developments in research, technology and innovation (RTI)
    in Austria until 2030. They are addressed to all relevant actors in the RTI system,
    in particular to Research Performing Organisations, Research Funding Organisations,
    Research Policy, memory institutions such as Libraries and Researchers. The recommendation
    paper was developed from 2018 to 2020 by the OANA working group "Open Science
    Strategy" and published for the first time in spring 2020 for a public consultation.
    The now available final version of the recommendation document, which contains
    feedback and comments from the consultation, is intended to provide an impetus
    for further discussion and implementation of Open Science in Austria and serves
    as a contribution and basis for a potential national Open Science Strategy in
    Austria. The document builds on the diverse expertise of the authors (academia,
    administration, library and archive, information technology, science policy, funding
    system, etc.) and reflects their personal experiences and opinions.
- lang: ger
  text: Der Blick auf internationale Aktivitäten zu Open Science zeigt ein breites
    Spektrum von einzelnen institutionellen Policies bis hin zu nationalen Aktionsplänen.
    Die vorliegenden Empfehlungen für eine nationale Open Science Strategie in Österreich
    orientieren sich an diesen internationalen Initiativen und stellen praktische
    Überlegungen für ihre koordinierte Implementierung im Hinblick auf strategische
    Entwicklungen in Forschung, Technologie und Innovation (FTI) bis 2030 in Österreich
    dar. Dabei richten sie sich an alle relevanten Akteur*innen im FTI System, im
    Besonderen an Forschungsstätten, Forschungsförderer, Forschungspolitik, Gedächtnisinstitutionen
    wie Bibliotheken und Wissenschafter*innen. Das Empfehlungspapier wurde von 2018
    bis 2020 von der OANA-Arbeitsgruppe "Open Science Strategie" entwickelt und im
    Frühling 2020 das erste Mal für eine öffentliche Konsultation veröffentlicht.
    Die nun vorliegende finale Version des Empfehlungsdokuments, die Feedback und
    Kommentare aus der Konsultation enthält, soll ein Anstoß für die weitere Diskussion
    und Umsetzung von Open Science in Österreich sein und als Beitrag und Grundlage
    einer potentiellen nationalen Open Science Strategie in Österreich dienen. Das
    Dokument baut auf der vielfältigen Expertise der Autor*innen auf (Wissenschaft,
    Administration, Bibliothek und Archiv, Informationstechnologie, Wissenschaftspolitik,
    Förderwesen etc.) und spiegelt deren persönliche Erfahrungen und Meinung wider.
article_processing_charge: No
author:
- first_name: Katja
  full_name: Mayer, Katja
  last_name: Mayer
- first_name: Katharina
  full_name: Rieck, Katharina
  last_name: Rieck
- first_name: Stefan
  full_name: Reichmann, Stefan
  last_name: Reichmann
- first_name: Patrick
  full_name: Danowski, Patrick
  id: 2EBD1598-F248-11E8-B48F-1D18A9856A87
  last_name: Danowski
  orcid: 0000-0002-6026-4409
- first_name: Anton
  full_name: Graschopf, Anton
  last_name: Graschopf
- first_name: Thomas
  full_name: König, Thomas
  last_name: König
- first_name: Peter
  full_name: Kraker, Peter
  last_name: Kraker
- first_name: Patrick
  full_name: Lehner, Patrick
  last_name: Lehner
- first_name: Falk
  full_name: Reckling, Falk
  last_name: Reckling
- first_name: Tony
  full_name: Ross-Hellauer, Tony
  last_name: Ross-Hellauer
- first_name: Daniel
  full_name: Spichtinger, Daniel
  last_name: Spichtinger
- first_name: Michalis
  full_name: Tzatzanis, Michalis
  last_name: Tzatzanis
- first_name: Stefanie
  full_name: Schürz, Stefanie
  last_name: Schürz
citation:
  ama: Mayer K, Rieck K, Reichmann S, et al. <i>Empfehlungen für eine nationale Open
    Science Strategie in Österreich / Recommendations for a National Open Science
    Strategy in Austria</i>. OANA; 2020. doi:<a href="https://doi.org/10.5281/ZENODO.4109242">10.5281/ZENODO.4109242</a>
  apa: Mayer, K., Rieck, K., Reichmann, S., Danowski, P., Graschopf, A., König, T.,
    … Schürz, S. (2020). <i>Empfehlungen für eine nationale Open Science Strategie
    in Österreich / Recommendations for a National Open Science Strategy in Austria</i>.
    OANA. <a href="https://doi.org/10.5281/ZENODO.4109242">https://doi.org/10.5281/ZENODO.4109242</a>
  chicago: Mayer, Katja, Katharina Rieck, Stefan Reichmann, Patrick Danowski, Anton
    Graschopf, Thomas König, Peter Kraker, et al. <i>Empfehlungen für eine nationale
    Open Science Strategie in Österreich / Recommendations for a National Open Science
    Strategy in Austria</i>. OANA, 2020. <a href="https://doi.org/10.5281/ZENODO.4109242">https://doi.org/10.5281/ZENODO.4109242</a>.
  ieee: K. Mayer <i>et al.</i>, <i>Empfehlungen für eine nationale Open Science Strategie
    in Österreich / Recommendations for a National Open Science Strategy in Austria</i>.
    OANA, 2020.
  ista: Mayer K, Rieck K, Reichmann S, Danowski P, Graschopf A, König T, Kraker P,
    Lehner P, Reckling F, Ross-Hellauer T, Spichtinger D, Tzatzanis M, Schürz S. 2020.
    Empfehlungen für eine nationale Open Science Strategie in Österreich / Recommendations
    for a National Open Science Strategy in Austria, OANA, 36p.
  mla: Mayer, Katja, et al. <i>Empfehlungen für eine nationale Open Science Strategie
    in Österreich / Recommendations for a National Open Science Strategy in Austria</i>.
    OANA, 2020, doi:<a href="https://doi.org/10.5281/ZENODO.4109242">10.5281/ZENODO.4109242</a>.
  short: K. Mayer, K. Rieck, S. Reichmann, P. Danowski, A. Graschopf, T. König, P.
    Kraker, P. Lehner, F. Reckling, T. Ross-Hellauer, D. Spichtinger, M. Tzatzanis,
    S. Schürz, Empfehlungen für eine nationale Open Science Strategie in Österreich
    / Recommendations for a National Open Science Strategy in Austria, OANA, 2020.
date_created: 2020-10-23T09:08:28Z
date_published: 2020-10-21T00:00:00Z
date_updated: 2020-10-23T09:34:40Z
day: '21'
ddc:
- '020'
department:
- _id: E-Lib
doi: 10.5281/ZENODO.4109242
file:
- access_level: open_access
  checksum: 8eba912bb4b20b4f82f8010f2110461a
  content_type: application/pdf
  creator: dernst
  date_created: 2020-10-23T09:29:45Z
  date_updated: 2020-10-23T09:29:45Z
  file_id: '8696'
  file_name: 2020_OANA_Mayer.pdf
  file_size: 2298363
  relation: main_file
  success: 1
file_date_updated: 2020-10-23T09:29:45Z
has_accepted_license: '1'
language:
- iso: ger
month: '10'
oa: 1
oa_version: Published Version
page: '36'
publication_status: published
publisher: OANA
status: public
title: Empfehlungen für eine nationale Open Science Strategie in Österreich / Recommendations
  for a National Open Science Strategy in Austria
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: working_paper
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '8706'
abstract:
- lang: eng
  text: As part of the Austrian Transition to Open Access (AT2OA) project, subproject
    TP1-B is working on designing a monitoring solution for the output of Open Access
    publications in Austria. This report on a potential Open Access monitoring approach
    in Austria is one of the results of these efforts and can serve as a basis for
    discussion on an international level.
- lang: ger
  text: Als Teil des Hochschulraumstrukturmittel-Projekts Austrian Transition to Open
    Access (AT2OA) befasst sich das Teilprojekt TP1-B mit der Konzeption einer Monitoring-Lösung
    für den Open Access-Publikationsoutput in Österreich. Der nun vorliegende Bericht
    zu einem potentiellen Open Access-Monitoring in Österreich ist eines der Ergebnisse
    dieser Bemühungen und kann als Grundlage einer Diskussion auf internationaler
    Ebene dienen.
article_processing_charge: No
article_type: original
author:
- first_name: Patrick
  full_name: Danowski, Patrick
  id: 2EBD1598-F248-11E8-B48F-1D18A9856A87
  last_name: Danowski
  orcid: 0000-0002-6026-4409
- first_name: Andreas
  full_name: Ferus, Andreas
  last_name: Ferus
- first_name: Anna-Laetitia
  full_name: Hikl, Anna-Laetitia
  last_name: Hikl
- first_name: Gerda
  full_name: McNeill, Gerda
  last_name: McNeill
- first_name: Clemens
  full_name: Miniberger, Clemens
  last_name: Miniberger
- first_name: Steve
  full_name: Reding, Steve
  last_name: Reding
- first_name: Tobias
  full_name: Zarka, Tobias
  last_name: Zarka
- first_name: Michael
  full_name: Zojer, Michael
  last_name: Zojer
citation:
  ama: Danowski P, Ferus A, Hikl A-L, et al. „Recommendation“ for the further procedure
    for open access monitoring. Deliverable of the AT2OA subproject TP1-B. <i>Mitteilungen
    der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare</i>. 2020;73(2):278-284.
    doi:<a href="https://doi.org/10.31263/voebm.v73i2.3941">10.31263/voebm.v73i2.3941</a>
  apa: Danowski, P., Ferus, A., Hikl, A.-L., McNeill, G., Miniberger, C., Reding,
    S., … Zojer, M. (2020). „Recommendation“ for the further procedure for open access
    monitoring. Deliverable of the AT2OA subproject TP1-B. <i>Mitteilungen der Vereinigung
    Österreichischer Bibliothekarinnen und Bibliothekare</i>. Vereinigung Österreichischer
    Bibliothekarinnen und Bibliothekare. <a href="https://doi.org/10.31263/voebm.v73i2.3941">https://doi.org/10.31263/voebm.v73i2.3941</a>
  chicago: Danowski, Patrick, Andreas Ferus, Anna-Laetitia Hikl, Gerda McNeill, Clemens
    Miniberger, Steve Reding, Tobias Zarka, and Michael Zojer. “„Recommendation“ for
    the further procedure for open access monitoring. Deliverable of the AT2OA subproject
    TP1-B.” <i>Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und
    Bibliothekare</i>. Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare,
    2020. <a href="https://doi.org/10.31263/voebm.v73i2.3941">https://doi.org/10.31263/voebm.v73i2.3941</a>.
  ieee: P. Danowski <i>et al.</i>, “„Recommendation“ for the further procedure for
    open access monitoring. Deliverable of the AT2OA subproject TP1-B,” <i>Mitteilungen
    der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare</i>, vol.
    73, no. 2. Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare, pp.
    278–284, 2020.
  ista: Danowski P, Ferus A, Hikl A-L, McNeill G, Miniberger C, Reding S, Zarka T,
    Zojer M. 2020. „Recommendation“ for the further procedure for open access monitoring.
    Deliverable of the AT2OA subproject TP1-B. Mitteilungen der Vereinigung Österreichischer
    Bibliothekarinnen und Bibliothekare. 73(2), 278–284.
  mla: Danowski, Patrick, et al. “„Recommendation“ for the further procedure for open
    access monitoring. Deliverable of the AT2OA subproject TP1-B.” <i>Mitteilungen
    der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare</i>, vol.
    73, no. 2, Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare, 2020,
    pp. 278–84, doi:<a href="https://doi.org/10.31263/voebm.v73i2.3941">10.31263/voebm.v73i2.3941</a>.
  short: P. Danowski, A. Ferus, A.-L. Hikl, G. McNeill, C. Miniberger, S. Reding,
    T. Zarka, M. Zojer, Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen
    und Bibliothekare 73 (2020) 278–284.
corr_author: '1'
date_created: 2020-10-25T23:01:19Z
date_published: 2020-07-14T00:00:00Z
date_updated: 2026-04-03T09:25:27Z
day: '14'
ddc:
- '020'
department:
- _id: E-Lib
doi: 10.31263/voebm.v73i2.3941
file:
- access_level: open_access
  checksum: 37443c34d91d5bdbeb38c78b14792537
  content_type: application/pdf
  creator: kschuh
  date_created: 2020-10-27T16:27:25Z
  date_updated: 2020-10-27T16:27:25Z
  file_id: '8714'
  file_name: 2020_VOEB_Danowski.pdf
  file_size: 960317
  relation: main_file
  success: 1
file_date_updated: 2020-10-27T16:27:25Z
has_accepted_license: '1'
intvolume: '        73'
issue: '2'
language:
- iso: ger
month: '07'
oa: 1
oa_version: Published Version
page: 278-284
publication: Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare
publication_identifier:
  eissn:
  - 1022-2588
publication_status: published
publisher: Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare
quality_controlled: '1'
scopus_import: '1'
status: public
title: „Recommendation“ for the further procedure for open access monitoring. Deliverable
  of the AT2OA subproject TP1-B
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 73
year: '2020'
...
---
_id: '8744'
abstract:
- lang: eng
  text: Understanding the conformational sampling of translation-arrested ribosome
    nascent chain complexes is key to understand co-translational folding. Up to now,
    coupling of cysteine oxidation, disulfide bond formation and structure formation
    in nascent chains has remained elusive. Here, we investigate the eye-lens protein
    γB-crystallin in the ribosomal exit tunnel. Using mass spectrometry, theoretical
    simulations, dynamic nuclear polarization-enhanced solid-state nuclear magnetic
    resonance and cryo-electron microscopy, we show that thiol groups of cysteine
    residues undergo S-glutathionylation and S-nitrosylation and form non-native disulfide
    bonds. Thus, covalent modification chemistry occurs already prior to nascent chain
    release as the ribosome exit tunnel provides sufficient space even for disulfide
    bond formation which can guide protein folding.
acknowledgement: 'We acknowledge help from Anja Seybert, Margot Frangakis, Diana Grewe,
  Mikhail Eltsov, Utz Ermel, and Shintaro Aibara. The work was supported by Deutsche
  Forschungsgemeinschaft in the CLiC graduate school. Work at the Center for Biomolecular
  Magnetic Resonance (BMRZ) is supported by the German state of Hesse. The work at
  BMRZ has been supported by the state of Hesse. L.S. has been supported by the DFG
  graduate college: CLiC.'
article_number: '5569'
article_processing_charge: No
article_type: original
author:
- first_name: Linda
  full_name: Schulte, Linda
  last_name: Schulte
- first_name: Jiafei
  full_name: Mao, Jiafei
  last_name: Mao
- first_name: Julian
  full_name: Reitz, Julian
  last_name: Reitz
- first_name: Sridhar
  full_name: Sreeramulu, Sridhar
  last_name: Sreeramulu
- first_name: Denis
  full_name: Kudlinzki, Denis
  last_name: Kudlinzki
- first_name: Victor-Valentin
  full_name: Hodirnau, Victor-Valentin
  id: 3661B498-F248-11E8-B48F-1D18A9856A87
  last_name: Hodirnau
  orcid: 0000-0003-3904-947X
- first_name: Jakob
  full_name: Meier-Credo, Jakob
  last_name: Meier-Credo
- first_name: Krishna
  full_name: Saxena, Krishna
  last_name: Saxena
- first_name: Florian
  full_name: Buhr, Florian
  last_name: Buhr
- first_name: Julian D.
  full_name: Langer, Julian D.
  last_name: Langer
- first_name: Martin
  full_name: Blackledge, Martin
  last_name: Blackledge
- first_name: Achilleas S.
  full_name: Frangakis, Achilleas S.
  last_name: Frangakis
- first_name: Clemens
  full_name: Glaubitz, Clemens
  last_name: Glaubitz
- first_name: Harald
  full_name: Schwalbe, Harald
  last_name: Schwalbe
citation:
  ama: Schulte L, Mao J, Reitz J, et al. Cysteine oxidation and disulfide formation
    in the ribosomal exit tunnel. <i>Nature Communications</i>. 2020;11. doi:<a href="https://doi.org/10.1038/s41467-020-19372-x">10.1038/s41467-020-19372-x</a>
  apa: Schulte, L., Mao, J., Reitz, J., Sreeramulu, S., Kudlinzki, D., Hodirnau, V.-V.,
    … Schwalbe, H. (2020). Cysteine oxidation and disulfide formation in the ribosomal
    exit tunnel. <i>Nature Communications</i>. Springer Nature. <a href="https://doi.org/10.1038/s41467-020-19372-x">https://doi.org/10.1038/s41467-020-19372-x</a>
  chicago: Schulte, Linda, Jiafei Mao, Julian Reitz, Sridhar Sreeramulu, Denis Kudlinzki,
    Victor-Valentin Hodirnau, Jakob Meier-Credo, et al. “Cysteine Oxidation and Disulfide
    Formation in the Ribosomal Exit Tunnel.” <i>Nature Communications</i>. Springer
    Nature, 2020. <a href="https://doi.org/10.1038/s41467-020-19372-x">https://doi.org/10.1038/s41467-020-19372-x</a>.
  ieee: L. Schulte <i>et al.</i>, “Cysteine oxidation and disulfide formation in the
    ribosomal exit tunnel,” <i>Nature Communications</i>, vol. 11. Springer Nature,
    2020.
  ista: Schulte L, Mao J, Reitz J, Sreeramulu S, Kudlinzki D, Hodirnau V-V, Meier-Credo
    J, Saxena K, Buhr F, Langer JD, Blackledge M, Frangakis AS, Glaubitz C, Schwalbe
    H. 2020. Cysteine oxidation and disulfide formation in the ribosomal exit tunnel.
    Nature Communications. 11, 5569.
  mla: Schulte, Linda, et al. “Cysteine Oxidation and Disulfide Formation in the Ribosomal
    Exit Tunnel.” <i>Nature Communications</i>, vol. 11, 5569, Springer Nature, 2020,
    doi:<a href="https://doi.org/10.1038/s41467-020-19372-x">10.1038/s41467-020-19372-x</a>.
  short: L. Schulte, J. Mao, J. Reitz, S. Sreeramulu, D. Kudlinzki, V.-V. Hodirnau,
    J. Meier-Credo, K. Saxena, F. Buhr, J.D. Langer, M. Blackledge, A.S. Frangakis,
    C. Glaubitz, H. Schwalbe, Nature Communications 11 (2020).
date_created: 2020-11-09T07:49:36Z
date_published: 2020-11-04T00:00:00Z
date_updated: 2025-06-12T07:01:22Z
day: '04'
ddc:
- '570'
department:
- _id: EM-Fac
doi: 10.1038/s41467-020-19372-x
external_id:
  isi:
  - '000592028600001'
  pmid:
  - '33149120'
file:
- access_level: open_access
  checksum: b2688f0347e69e6629bba582077278c5
  content_type: application/pdf
  creator: dernst
  date_created: 2020-11-09T07:56:24Z
  date_updated: 2020-11-09T07:56:24Z
  file_id: '8745'
  file_name: 2020_NatureComm_Schulte.pdf
  file_size: 1670898
  relation: main_file
  success: 1
file_date_updated: 2020-11-09T07:56:24Z
has_accepted_license: '1'
intvolume: '        11'
isi: 1
keyword:
- General Biochemistry
- Genetics and Molecular Biology
- General Physics and Astronomy
- General Chemistry
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nature Communications
publication_identifier:
  issn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Cysteine oxidation and disulfide formation in the ribosomal exit tunnel
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 11
year: '2020'
...
---
_id: '8787'
abstract:
- lang: eng
  text: Breakdown of vascular barriers is a major complication of inflammatory diseases.
    Anucleate platelets form blood-clots during thrombosis, but also play a crucial
    role in inflammation. While spatio-temporal dynamics of clot formation are well
    characterized, the cell-biological mechanisms of platelet recruitment to inflammatory
    micro-environments remain incompletely understood. Here we identify Arp2/3-dependent
    lamellipodia formation as a prominent morphological feature of immune-responsive
    platelets. Platelets use lamellipodia to scan for fibrin(ogen) deposited on the
    inflamed vasculature and to directionally spread, to polarize and to govern haptotactic
    migration along gradients of the adhesive ligand. Platelet-specific abrogation
    of Arp2/3 interferes with haptotactic repositioning of platelets to microlesions,
    thus impairing vascular sealing and provoking inflammatory microbleeding. During
    infection, haptotaxis promotes capture of bacteria and prevents hematogenic dissemination,
    rendering platelets gate-keepers of the inflamed microvasculature. Consequently,
    these findings identify haptotaxis as a key effector function of immune-responsive
    platelets.
acknowledgement: "We thank Sebastian Helmer, Nicole Blount, Christine Mann, and Beate
  Jantz for technical assistance; Hellen Ishikawa-Ankerhold for help and advice; Michael
  Sixt for critical\r\ndiscussions. This study was supported by the DFG SFB 914 (S.M.
  [B02 and Z01], K.Sch.\r\n[B02], B.W. [A02 and Z03], C.A.R. [B03], C.S. [A10], J.P.
  [Gerok position]), the DFG\r\nSFB 1123 (S.M. [B06]), the DFG FOR 2033 (S.M. and
  F.G.), the German Center for\r\nCardiovascular Research (DZHK) (Clinician Scientist
  Program [L.N.], MHA 1.4VD\r\n[S.M.], Postdoc Start-up Grant, 81×3600213 [F.G.]),
  FP7 program (project 260309,\r\nPRESTIGE [S.M.]), FöFoLe project 1015/1009 (L.N.),
  FöFoLe project 947 (F.G.), the\r\nFriedrich-Baur-Stiftung project 41/16 (F.G.),
  and LMUexcellence NFF (F.G.). This project has received funding from the European
  Research Council (ERC) under the European Union’s Horizon 2020 research and innovation
  program (grant agreement no.\r\n833440) (S.M.). F.G. received funding from the European
  Union’s Horizon 2020 research\r\nand innovation program under the Marie Skłodowska-Curie
  grant agreement no.\r\n747687."
article_number: '5778'
article_processing_charge: No
article_type: original
author:
- first_name: Leo
  full_name: Nicolai, Leo
  last_name: Nicolai
- first_name: Karin
  full_name: Schiefelbein, Karin
  last_name: Schiefelbein
- first_name: Silvia
  full_name: Lipsky, Silvia
  last_name: Lipsky
- first_name: Alexander
  full_name: Leunig, Alexander
  last_name: Leunig
- first_name: Marie
  full_name: Hoffknecht, Marie
  last_name: Hoffknecht
- first_name: Kami
  full_name: Pekayvaz, Kami
  last_name: Pekayvaz
- first_name: Ben
  full_name: Raude, Ben
  last_name: Raude
- first_name: Charlotte
  full_name: Marx, Charlotte
  last_name: Marx
- first_name: Andreas
  full_name: Ehrlich, Andreas
  last_name: Ehrlich
- first_name: Joachim
  full_name: Pircher, Joachim
  last_name: Pircher
- first_name: Zhe
  full_name: Zhang, Zhe
  last_name: Zhang
- first_name: Inas
  full_name: Saleh, Inas
  last_name: Saleh
- first_name: Anna-Kristina
  full_name: Marel, Anna-Kristina
  last_name: Marel
- first_name: Achim
  full_name: Löf, Achim
  last_name: Löf
- first_name: Tobias
  full_name: Petzold, Tobias
  last_name: Petzold
- first_name: Michael
  full_name: Lorenz, Michael
  last_name: Lorenz
- first_name: Konstantin
  full_name: Stark, Konstantin
  last_name: Stark
- first_name: Robert
  full_name: Pick, Robert
  last_name: Pick
- first_name: Gerhild
  full_name: Rosenberger, Gerhild
  last_name: Rosenberger
- first_name: Ludwig
  full_name: Weckbach, Ludwig
  last_name: Weckbach
- first_name: Bernd
  full_name: Uhl, Bernd
  last_name: Uhl
- first_name: Sheng
  full_name: Xia, Sheng
  last_name: Xia
- first_name: Christoph Andreas
  full_name: Reichel, Christoph Andreas
  last_name: Reichel
- first_name: Barbara
  full_name: Walzog, Barbara
  last_name: Walzog
- first_name: Christian
  full_name: Schulz, Christian
  last_name: Schulz
- first_name: Vanessa
  full_name: Zheden, Vanessa
  id: 39C5A68A-F248-11E8-B48F-1D18A9856A87
  last_name: Zheden
  orcid: 0000-0002-9438-4783
- first_name: Markus
  full_name: Bender, Markus
  last_name: Bender
- first_name: Rong
  full_name: Li, Rong
  last_name: Li
- first_name: Steffen
  full_name: Massberg, Steffen
  last_name: Massberg
- first_name: Florian R
  full_name: Gärtner, Florian R
  id: 397A88EE-F248-11E8-B48F-1D18A9856A87
  last_name: Gärtner
  orcid: 0000-0001-6120-3723
citation:
  ama: Nicolai L, Schiefelbein K, Lipsky S, et al. Vascular surveillance by haptotactic
    blood platelets in inflammation and infection. <i>Nature Communications</i>. 2020;11.
    doi:<a href="https://doi.org/10.1038/s41467-020-19515-0">10.1038/s41467-020-19515-0</a>
  apa: Nicolai, L., Schiefelbein, K., Lipsky, S., Leunig, A., Hoffknecht, M., Pekayvaz,
    K., … Gärtner, F. R. (2020). Vascular surveillance by haptotactic blood platelets
    in inflammation and infection. <i>Nature Communications</i>. Springer Nature.
    <a href="https://doi.org/10.1038/s41467-020-19515-0">https://doi.org/10.1038/s41467-020-19515-0</a>
  chicago: Nicolai, Leo, Karin Schiefelbein, Silvia Lipsky, Alexander Leunig, Marie
    Hoffknecht, Kami Pekayvaz, Ben Raude, et al. “Vascular Surveillance by Haptotactic
    Blood Platelets in Inflammation and Infection.” <i>Nature Communications</i>.
    Springer Nature, 2020. <a href="https://doi.org/10.1038/s41467-020-19515-0">https://doi.org/10.1038/s41467-020-19515-0</a>.
  ieee: L. Nicolai <i>et al.</i>, “Vascular surveillance by haptotactic blood platelets
    in inflammation and infection,” <i>Nature Communications</i>, vol. 11. Springer
    Nature, 2020.
  ista: Nicolai L, Schiefelbein K, Lipsky S, Leunig A, Hoffknecht M, Pekayvaz K, Raude
    B, Marx C, Ehrlich A, Pircher J, Zhang Z, Saleh I, Marel A-K, Löf A, Petzold T,
    Lorenz M, Stark K, Pick R, Rosenberger G, Weckbach L, Uhl B, Xia S, Reichel CA,
    Walzog B, Schulz C, Zheden V, Bender M, Li R, Massberg S, Gärtner FR. 2020. Vascular
    surveillance by haptotactic blood platelets in inflammation and infection. Nature
    Communications. 11, 5778.
  mla: Nicolai, Leo, et al. “Vascular Surveillance by Haptotactic Blood Platelets
    in Inflammation and Infection.” <i>Nature Communications</i>, vol. 11, 5778, Springer
    Nature, 2020, doi:<a href="https://doi.org/10.1038/s41467-020-19515-0">10.1038/s41467-020-19515-0</a>.
  short: L. Nicolai, K. Schiefelbein, S. Lipsky, A. Leunig, M. Hoffknecht, K. Pekayvaz,
    B. Raude, C. Marx, A. Ehrlich, J. Pircher, Z. Zhang, I. Saleh, A.-K. Marel, A.
    Löf, T. Petzold, M. Lorenz, K. Stark, R. Pick, G. Rosenberger, L. Weckbach, B.
    Uhl, S. Xia, C.A. Reichel, B. Walzog, C. Schulz, V. Zheden, M. Bender, R. Li,
    S. Massberg, F.R. Gärtner, Nature Communications 11 (2020).
corr_author: '1'
date_created: 2020-11-22T23:01:23Z
date_published: 2020-11-13T00:00:00Z
date_updated: 2026-04-02T11:48:21Z
day: '13'
ddc:
- '570'
department:
- _id: MiSi
- _id: EM-Fac
doi: 10.1038/s41467-020-19515-0
ec_funded: 1
external_id:
  isi:
  - '000594648000014'
  pmid:
  - '33188196'
file:
- access_level: open_access
  checksum: 485b7b6cf30198ba0ce126491a28f125
  content_type: application/pdf
  creator: dernst
  date_created: 2020-11-23T13:29:49Z
  date_updated: 2020-11-23T13:29:49Z
  file_id: '8798'
  file_name: 2020_NatureComm_Nicolai.pdf
  file_size: 7035340
  relation: main_file
  success: 1
file_date_updated: 2020-11-23T13:29:49Z
has_accepted_license: '1'
intvolume: '        11'
isi: 1
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 260AA4E2-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '747687'
  name: Mechanical Adaptation of Lamellipodial Actin Networks in Migrating Cells
publication: Nature Communications
publication_identifier:
  eissn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1038/s41467-022-31310-7
scopus_import: '1'
status: public
title: Vascular surveillance by haptotactic blood platelets in inflammation and infection
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 11
year: '2020'
...
---
_id: '8971'
abstract:
- lang: eng
  text: The actin-related protein (Arp)2/3 complex nucleates branched actin filament
    networks pivotal for cell migration, endocytosis and pathogen infection. Its activation
    is tightly regulated and involves complex structural rearrangements and actin
    filament binding, which are yet to be understood. Here, we report a 9.0 Å resolution
    structure of the actin filament Arp2/3 complex branch junction in cells using
    cryo-electron tomography and subtomogram averaging. This allows us to generate
    an accurate model of the active Arp2/3 complex in the branch junction and its
    interaction with actin filaments. Notably, our model reveals a previously undescribed
    set of interactions of the Arp2/3 complex with the mother filament, significantly
    different to the previous branch junction model. Our structure also indicates
    a central role for the ArpC3 subunit in stabilizing the active conformation.
acknowledged_ssus:
- _id: ScienComp
- _id: LifeSc
- _id: Bio
- _id: EM-Fac
acknowledgement: "This research was supported by the Scientific Service Units (SSUs)
  of IST Austria through resources provided by Scientific Computing (SciComp), the
  Life Science Facility (LSF), the BioImaging Facility (BIF), and the Electron Microscopy
  Facility (EMF). We also thank Dimitry Tegunov (MPI for Biophysical Chemistry) for
  helpful discussions\r\nabout the M software, and Michael Sixt (IST Austria) and
  Klemens Rottner (Technical University Braunschweig, HZI Braunschweig) for critical
  reading of the manuscript. We also thank Gregory Voth (University of Chicago) for
  providing us the MD-derived branch junction model for comparison. The authors acknowledge
  support from IST Austria and from the Austrian Science Fund (FWF): M02495 to G.D.
  and Austrian Science Fund (FWF): P33367 to F.K.M.S. "
article_number: '6437'
article_processing_charge: No
article_type: original
author:
- first_name: Florian
  full_name: Fäßler, Florian
  id: 404F5528-F248-11E8-B48F-1D18A9856A87
  last_name: Fäßler
  orcid: 0000-0001-7149-769X
- first_name: Georgi A
  full_name: Dimchev, Georgi A
  id: 38C393BE-F248-11E8-B48F-1D18A9856A87
  last_name: Dimchev
  orcid: 0000-0001-8370-6161
- first_name: Victor-Valentin
  full_name: Hodirnau, Victor-Valentin
  id: 3661B498-F248-11E8-B48F-1D18A9856A87
  last_name: Hodirnau
  orcid: 0000-0003-3904-947X
- first_name: William
  full_name: Wan, William
  last_name: Wan
- first_name: Florian KM
  full_name: Schur, Florian KM
  id: 48AD8942-F248-11E8-B48F-1D18A9856A87
  last_name: Schur
  orcid: 0000-0003-4790-8078
citation:
  ama: Fäßler F, Dimchev GA, Hodirnau V-V, Wan W, Schur FK. Cryo-electron tomography
    structure of Arp2/3 complex in cells reveals new insights into the branch junction.
    <i>Nature Communications</i>. 2020;11. doi:<a href="https://doi.org/10.1038/s41467-020-20286-x">10.1038/s41467-020-20286-x</a>
  apa: Fäßler, F., Dimchev, G. A., Hodirnau, V.-V., Wan, W., &#38; Schur, F. K. (2020).
    Cryo-electron tomography structure of Arp2/3 complex in cells reveals new insights
    into the branch junction. <i>Nature Communications</i>. Springer Nature. <a href="https://doi.org/10.1038/s41467-020-20286-x">https://doi.org/10.1038/s41467-020-20286-x</a>
  chicago: Fäßler, Florian, Georgi A Dimchev, Victor-Valentin Hodirnau, William Wan,
    and Florian KM Schur. “Cryo-Electron Tomography Structure of Arp2/3 Complex in
    Cells Reveals New Insights into the Branch Junction.” <i>Nature Communications</i>.
    Springer Nature, 2020. <a href="https://doi.org/10.1038/s41467-020-20286-x">https://doi.org/10.1038/s41467-020-20286-x</a>.
  ieee: F. Fäßler, G. A. Dimchev, V.-V. Hodirnau, W. Wan, and F. K. Schur, “Cryo-electron
    tomography structure of Arp2/3 complex in cells reveals new insights into the
    branch junction,” <i>Nature Communications</i>, vol. 11. Springer Nature, 2020.
  ista: Fäßler F, Dimchev GA, Hodirnau V-V, Wan W, Schur FK. 2020. Cryo-electron tomography
    structure of Arp2/3 complex in cells reveals new insights into the branch junction.
    Nature Communications. 11, 6437.
  mla: Fäßler, Florian, et al. “Cryo-Electron Tomography Structure of Arp2/3 Complex
    in Cells Reveals New Insights into the Branch Junction.” <i>Nature Communications</i>,
    vol. 11, 6437, Springer Nature, 2020, doi:<a href="https://doi.org/10.1038/s41467-020-20286-x">10.1038/s41467-020-20286-x</a>.
  short: F. Fäßler, G.A. Dimchev, V.-V. Hodirnau, W. Wan, F.K. Schur, Nature Communications
    11 (2020).
corr_author: '1'
date_created: 2020-12-23T08:25:45Z
date_published: 2020-12-22T00:00:00Z
date_updated: 2025-04-15T07:52:12Z
day: '22'
ddc:
- '570'
department:
- _id: FlSc
- _id: EM-Fac
doi: 10.1038/s41467-020-20286-x
external_id:
  isi:
  - '000603078000003'
file:
- access_level: open_access
  checksum: 55d43ea0061cc4027ba45e966e1db8cc
  content_type: application/pdf
  creator: dernst
  date_created: 2020-12-28T08:16:10Z
  date_updated: 2020-12-28T08:16:10Z
  file_id: '8975'
  file_name: 2020_NatureComm_Faessler.pdf
  file_size: 3958727
  relation: main_file
  success: 1
file_date_updated: 2020-12-28T08:16:10Z
has_accepted_license: '1'
intvolume: '        11'
isi: 1
keyword:
- General Biochemistry
- Genetics and Molecular Biology
- General Physics and Astronomy
- General Chemistry
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: 9B954C5C-BA93-11EA-9121-9846C619BF3A
  grant_number: P33367
  name: Structure and isoform diversity of the Arp2/3 complex
- _id: 2674F658-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: M02495
  name: Protein structure and function in filopodia across scales
publication: Nature Communications
publication_identifier:
  issn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/cutting-edge-technology-reveals-structures-within-cells/
scopus_import: '1'
status: public
title: Cryo-electron tomography structure of Arp2/3 complex in cells reveals new insights
  into the branch junction
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 11
year: '2020'
...
