---
_id: '12901'
article_processing_charge: No
author:
- first_name: Alois
  full_name: Schlögl, Alois
  id: 45BF87EE-F248-11E8-B48F-1D18A9856A87
  last_name: Schlögl
  orcid: 0000-0002-5621-8100
- first_name: Janos
  full_name: Kiss, Janos
  id: 3D3A06F8-F248-11E8-B48F-1D18A9856A87
  last_name: Kiss
- first_name: Stefano
  full_name: Elefante, Stefano
  id: 490F40CE-F248-11E8-B48F-1D18A9856A87
  last_name: Elefante
citation:
  ama: 'Schlögl A, Kiss J, Elefante S. Is Debian suitable for running an HPC Cluster?
    In: <i>AHPC19 - Austrian HPC Meeting 2019 </i>. Institut für Mathematik und wissenschaftliches
    Rechnen der Universität Graz; 2019:25.'
  apa: 'Schlögl, A., Kiss, J., &#38; Elefante, S. (2019). Is Debian suitable for running
    an HPC Cluster? In <i>AHPC19 - Austrian HPC Meeting 2019 </i> (p. 25). Grundlsee,
    Austria: Institut für Mathematik und wissenschaftliches Rechnen der Universität
    Graz.'
  chicago: Schlögl, Alois, Janos Kiss, and Stefano Elefante. “Is Debian Suitable for
    Running an HPC Cluster?” In <i>AHPC19 - Austrian HPC Meeting 2019 </i>, 25. Institut
    für Mathematik und wissenschaftliches Rechnen der Universität Graz, 2019.
  ieee: A. Schlögl, J. Kiss, and S. Elefante, “Is Debian suitable for running an HPC
    Cluster?,” in <i>AHPC19 - Austrian HPC Meeting 2019 </i>, Grundlsee, Austria,
    2019, p. 25.
  ista: 'Schlögl A, Kiss J, Elefante S. 2019. Is Debian suitable for running an HPC
    Cluster? AHPC19 - Austrian HPC Meeting 2019 . AHPC: Austrian HPC Meeting, 25.'
  mla: Schlögl, Alois, et al. “Is Debian Suitable for Running an HPC Cluster?” <i>AHPC19
    - Austrian HPC Meeting 2019 </i>, Institut für Mathematik und wissenschaftliches
    Rechnen der Universität Graz, 2019, p. 25.
  short: A. Schlögl, J. Kiss, S. Elefante, in:, AHPC19 - Austrian HPC Meeting 2019
    , Institut für Mathematik und wissenschaftliches Rechnen der Universität Graz,
    2019, p. 25.
conference:
  end_date: 2019-02-27
  location: Grundlsee, Austria
  name: 'AHPC: Austrian HPC Meeting'
  start_date: 2019-02-25
corr_author: '1'
date_created: 2023-05-05T12:48:48Z
date_published: 2019-02-27T00:00:00Z
date_updated: 2024-10-09T21:05:24Z
day: '27'
ddc:
- '000'
department:
- _id: ScienComp
file:
- access_level: open_access
  checksum: acc8272027faaf30709c51ac5c58ffa4
  content_type: application/pdf
  creator: dernst
  date_created: 2023-05-16T07:27:09Z
  date_updated: 2023-05-16T07:27:09Z
  file_id: '12970'
  file_name: 2019_AHPC_Schloegl.pdf
  file_size: 1097603
  relation: main_file
  success: 1
file_date_updated: 2023-05-16T07:27:09Z
has_accepted_license: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://vsc.ac.at/fileadmin/user_upload/vsc/conferences/ahpc19/BOOKLET_AHPC19.pdf
month: '02'
oa: 1
oa_version: Published Version
page: '25'
publication: 'AHPC19 - Austrian HPC Meeting 2019 '
publication_status: published
publisher: Institut für Mathematik und wissenschaftliches Rechnen der Universität
  Graz
status: public
title: Is Debian suitable for running an HPC Cluster?
type: conference_abstract
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2019'
...
---
_id: '6052'
abstract:
- lang: eng
  text: 'Expansion microscopy is a relatively new approach to super-resolution imaging
    that uses expandable hydrogels to isotropically increase the physical distance
    between fluorophores in biological samples such as cell cultures or tissue slices.
    The classic gel recipe results in an expansion factor of ~4×, with a resolution
    of 60–80 nm. We have recently developed X10 microscopy, which uses a gel that
    achieves an expansion factor of ~10×, with a resolution of ~25 nm. Here, we provide
    a step-by-step protocol for X10 expansion microscopy. A typical experiment consists
    of seven sequential stages: (i) immunostaining, (ii) anchoring, (iii) polymerization,
    (iv) homogenization, (v) expansion, (vi) imaging, and (vii) validation. The protocol
    presented here includes recommendations for optimization, pitfalls and their solutions,
    and detailed guidelines that should increase reproducibility. Although our protocol
    focuses on X10 expansion microscopy, we detail which of these suggestions are
    also applicable to classic fourfold expansion microscopy. We exemplify our protocol
    using primary hippocampal neurons from rats, but our approach can be used with
    other primary cells or cultured cell lines of interest. This protocol will enable
    any researcher with basic experience in immunostainings and access to an epifluorescence
    microscope to perform super-resolution microscopy with X10. The procedure takes
    3 d and requires ~5 h of actively handling the sample for labeling and expansion,
    and another ~3 h for imaging and analysis.'
article_processing_charge: No
article_type: original
author:
- first_name: Sven M
  full_name: Truckenbrodt, Sven M
  id: 45812BD4-F248-11E8-B48F-1D18A9856A87
  last_name: Truckenbrodt
- first_name: Christoph M
  full_name: Sommer, Christoph M
  id: 4DF26D8C-F248-11E8-B48F-1D18A9856A87
  last_name: Sommer
  orcid: 0000-0003-1216-9105
- first_name: Silvio O
  full_name: Rizzoli, Silvio O
  last_name: Rizzoli
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
citation:
  ama: Truckenbrodt SM, Sommer CM, Rizzoli SO, Danzl JG. A practical guide to optimization
    in X10 expansion microscopy. <i>Nature Protocols</i>. 2019;14(3):832–863. doi:<a
    href="https://doi.org/10.1038/s41596-018-0117-3">10.1038/s41596-018-0117-3</a>
  apa: Truckenbrodt, S. M., Sommer, C. M., Rizzoli, S. O., &#38; Danzl, J. G. (2019).
    A practical guide to optimization in X10 expansion microscopy. <i>Nature Protocols</i>.
    Nature Publishing Group. <a href="https://doi.org/10.1038/s41596-018-0117-3">https://doi.org/10.1038/s41596-018-0117-3</a>
  chicago: Truckenbrodt, Sven M, Christoph M Sommer, Silvio O Rizzoli, and Johann
    G Danzl. “A Practical Guide to Optimization in X10 Expansion Microscopy.” <i>Nature
    Protocols</i>. Nature Publishing Group, 2019. <a href="https://doi.org/10.1038/s41596-018-0117-3">https://doi.org/10.1038/s41596-018-0117-3</a>.
  ieee: S. M. Truckenbrodt, C. M. Sommer, S. O. Rizzoli, and J. G. Danzl, “A practical
    guide to optimization in X10 expansion microscopy,” <i>Nature Protocols</i>, vol.
    14, no. 3. Nature Publishing Group, pp. 832–863, 2019.
  ista: Truckenbrodt SM, Sommer CM, Rizzoli SO, Danzl JG. 2019. A practical guide
    to optimization in X10 expansion microscopy. Nature Protocols. 14(3), 832–863.
  mla: Truckenbrodt, Sven M., et al. “A Practical Guide to Optimization in X10 Expansion
    Microscopy.” <i>Nature Protocols</i>, vol. 14, no. 3, Nature Publishing Group,
    2019, pp. 832–863, doi:<a href="https://doi.org/10.1038/s41596-018-0117-3">10.1038/s41596-018-0117-3</a>.
  short: S.M. Truckenbrodt, C.M. Sommer, S.O. Rizzoli, J.G. Danzl, Nature Protocols
    14 (2019) 832–863.
date_created: 2019-02-24T22:59:20Z
date_published: 2019-03-01T00:00:00Z
date_updated: 2025-04-14T07:44:00Z
day: '01'
ddc:
- '570'
department:
- _id: JoDa
- _id: Bio
doi: 10.1038/s41596-018-0117-3
ec_funded: 1
external_id:
  isi:
  - '000459890700008'
  pmid:
  - '30778205'
file:
- access_level: open_access
  checksum: 7efb9951e7ddf3e3dcc2fb92b859c623
  content_type: application/vnd.openxmlformats-officedocument.wordprocessingml.document
  creator: kschuh
  date_created: 2021-06-29T14:41:46Z
  date_updated: 2021-06-29T14:41:46Z
  file_id: '9619'
  file_name: 181031_Truckenbrodt_ExM_NatProtoc.docx
  file_size: 84478958
  relation: main_file
  success: 1
file_date_updated: 2021-06-29T14:41:46Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
issue: '3'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Submitted Version
page: 832–863
pmid: 1
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: 265CB4D0-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03600
  name: Optical control of synaptic function via adhesion molecules
publication: Nature Protocols
publication_status: published
publisher: Nature Publishing Group
quality_controlled: '1'
scopus_import: '1'
status: public
title: A practical guide to optimization in X10 expansion microscopy
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 14
year: '2019'
...
---
_id: '6087'
abstract:
- lang: eng
  text: Cell fate specification by lateral inhibition typically involves contact signaling
    through the Delta-Notch signaling pathway. However, whether this is the only signaling
    mode mediating lateral inhibition remains unclear. Here we show that in zebrafish
    oogenesis, a group of cells within the granulosa cell layer at the oocyte animal
    pole acquire elevated levels of the transcriptional coactivator TAZ in their nuclei.
    One of these cells, the future micropyle precursor cell (MPC), accumulates increasingly
    high levels of nuclear TAZ and grows faster than its surrounding cells, mechanically
    compressing those cells, which ultimately lose TAZ from their nuclei. Strikingly,
    relieving neighbor-cell compression by MPC ablation or aspiration restores nuclear
    TAZ accumulation in neighboring cells, eventually leading to MPC re-specification
    from these cells. Conversely, MPC specification is defective in taz−/− follicles.
    These findings uncover a novel mode of lateral inhibition in cell fate specification
    based on mechanical signals controlling TAZ activity.
acknowledged_ssus:
- _id: Bio
- _id: EM-Fac
- _id: LifeSc
acknowledgement: We thank Roland Dosch, Makoto Furutani-Seiki, Brian Link, Mary Mullins,
  and Masazumi Tada for providing transgenic and/or mutant zebrafish lines; Alexandra
  Schauer, Shayan Shami-Pour, and the rest of the Heisenberg lab for technical assistance
  and feedback on the manuscript; and the Bioimaging, Electron Microscopy, and Zebrafish
  facilities of IST Austria for continuous support. This work was supported by an
  ERC advanced grant ( MECSPEC to C.-P.H.).
article_processing_charge: No
article_type: original
author:
- first_name: Peng
  full_name: Xia, Peng
  id: 4AB6C7D0-F248-11E8-B48F-1D18A9856A87
  last_name: Xia
  orcid: 0000-0002-5419-7756
- first_name: Daniel J
  full_name: Gütl, Daniel J
  id: 381929CE-F248-11E8-B48F-1D18A9856A87
  last_name: Gütl
- first_name: Vanessa
  full_name: Zheden, Vanessa
  id: 39C5A68A-F248-11E8-B48F-1D18A9856A87
  last_name: Zheden
  orcid: 0000-0002-9438-4783
- first_name: Carl-Philipp J
  full_name: Heisenberg, Carl-Philipp J
  id: 39427864-F248-11E8-B48F-1D18A9856A87
  last_name: Heisenberg
  orcid: 0000-0002-0912-4566
citation:
  ama: Xia P, Gütl DJ, Zheden V, Heisenberg C-PJ. Lateral inhibition in cell specification
    mediated by mechanical signals modulating TAZ activity. <i>Cell</i>. 2019;176(6):1379-1392.e14.
    doi:<a href="https://doi.org/10.1016/j.cell.2019.01.019">10.1016/j.cell.2019.01.019</a>
  apa: Xia, P., Gütl, D. J., Zheden, V., &#38; Heisenberg, C.-P. J. (2019). Lateral
    inhibition in cell specification mediated by mechanical signals modulating TAZ
    activity. <i>Cell</i>. Elsevier. <a href="https://doi.org/10.1016/j.cell.2019.01.019">https://doi.org/10.1016/j.cell.2019.01.019</a>
  chicago: Xia, Peng, Daniel J Gütl, Vanessa Zheden, and Carl-Philipp J Heisenberg.
    “Lateral Inhibition in Cell Specification Mediated by Mechanical Signals Modulating
    TAZ Activity.” <i>Cell</i>. Elsevier, 2019. <a href="https://doi.org/10.1016/j.cell.2019.01.019">https://doi.org/10.1016/j.cell.2019.01.019</a>.
  ieee: P. Xia, D. J. Gütl, V. Zheden, and C.-P. J. Heisenberg, “Lateral inhibition
    in cell specification mediated by mechanical signals modulating TAZ activity,”
    <i>Cell</i>, vol. 176, no. 6. Elsevier, p. 1379–1392.e14, 2019.
  ista: Xia P, Gütl DJ, Zheden V, Heisenberg C-PJ. 2019. Lateral inhibition in cell
    specification mediated by mechanical signals modulating TAZ activity. Cell. 176(6),
    1379–1392.e14.
  mla: Xia, Peng, et al. “Lateral Inhibition in Cell Specification Mediated by Mechanical
    Signals Modulating TAZ Activity.” <i>Cell</i>, vol. 176, no. 6, Elsevier, 2019,
    p. 1379–1392.e14, doi:<a href="https://doi.org/10.1016/j.cell.2019.01.019">10.1016/j.cell.2019.01.019</a>.
  short: P. Xia, D.J. Gütl, V. Zheden, C.-P.J. Heisenberg, Cell 176 (2019) 1379–1392.e14.
date_created: 2019-03-10T22:59:19Z
date_published: 2019-03-07T00:00:00Z
date_updated: 2026-06-18T18:59:54Z
day: '07'
ddc:
- '570'
department:
- _id: CaHe
- _id: EM-Fac
doi: 10.1016/j.cell.2019.01.019
ec_funded: 1
external_id:
  isi:
  - '000460509600013'
  pmid:
  - '30773315'
intvolume: '       176'
isi: 1
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.cell.2019.01.019
month: '03'
oa: 1
oa_version: Published Version
page: 1379-1392.e14
pmid: 1
project:
- _id: 260F1432-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742573'
  name: Interaction and feedback between cell mechanics and fate specification in
    vertebrate gastrulation
publication: Cell
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/in-zebrafish-eggs-most-rapidly-growing-cell-inhibits-its-neighbours-through-mechanical-signals/
scopus_import: '1'
status: public
title: Lateral inhibition in cell specification mediated by mechanical signals modulating
  TAZ activity
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 176
year: '2019'
...
---
_id: '6093'
abstract:
- lang: eng
  text: Blebs are cellular protrusions observed in migrating cells and in cells undergoing
    spreading, cytokinesis, and apoptosis. Here we investigate the flow of cytoplasm
    during bleb formation and the concurrent changes in cell volume using zebrafish
    primordial germ cells (PGCs) as an in vivo model. We show that bleb inflation
    occurs concomitantly with cytoplasmic inflow into it and that during this process
    the total cell volume does not change. We thus show that bleb formation in primordial
    germ cells results primarily from redistribution of material within the cell rather
    than being driven by flow of water from an external source.
article_number: e0212699
article_processing_charge: No
author:
- first_name: Mohammad
  full_name: Goudarzi, Mohammad
  id: 3384113A-F248-11E8-B48F-1D18A9856A87
  last_name: Goudarzi
- first_name: Aleix
  full_name: Boquet-Pujadas, Aleix
  last_name: Boquet-Pujadas
- first_name: Jean Christophe
  full_name: Olivo-Marin, Jean Christophe
  last_name: Olivo-Marin
- first_name: Erez
  full_name: Raz, Erez
  last_name: Raz
citation:
  ama: Goudarzi M, Boquet-Pujadas A, Olivo-Marin JC, Raz E. Fluid dynamics during
    bleb formation in migrating cells in vivo. <i>PLOS ONE</i>. 2019;14(2). doi:<a
    href="https://doi.org/10.1371/journal.pone.0212699">10.1371/journal.pone.0212699</a>
  apa: Goudarzi, M., Boquet-Pujadas, A., Olivo-Marin, J. C., &#38; Raz, E. (2019).
    Fluid dynamics during bleb formation in migrating cells in vivo. <i>PLOS ONE</i>.
    Public Library of Science. <a href="https://doi.org/10.1371/journal.pone.0212699">https://doi.org/10.1371/journal.pone.0212699</a>
  chicago: Goudarzi, Mohammad, Aleix Boquet-Pujadas, Jean Christophe Olivo-Marin,
    and Erez Raz. “Fluid Dynamics during Bleb Formation in Migrating Cells in Vivo.”
    <i>PLOS ONE</i>. Public Library of Science, 2019. <a href="https://doi.org/10.1371/journal.pone.0212699">https://doi.org/10.1371/journal.pone.0212699</a>.
  ieee: M. Goudarzi, A. Boquet-Pujadas, J. C. Olivo-Marin, and E. Raz, “Fluid dynamics
    during bleb formation in migrating cells in vivo,” <i>PLOS ONE</i>, vol. 14, no.
    2. Public Library of Science, 2019.
  ista: Goudarzi M, Boquet-Pujadas A, Olivo-Marin JC, Raz E. 2019. Fluid dynamics
    during bleb formation in migrating cells in vivo. PLOS ONE. 14(2), e0212699.
  mla: Goudarzi, Mohammad, et al. “Fluid Dynamics during Bleb Formation in Migrating
    Cells in Vivo.” <i>PLOS ONE</i>, vol. 14, no. 2, e0212699, Public Library of Science,
    2019, doi:<a href="https://doi.org/10.1371/journal.pone.0212699">10.1371/journal.pone.0212699</a>.
  short: M. Goudarzi, A. Boquet-Pujadas, J.C. Olivo-Marin, E. Raz, PLOS ONE 14 (2019).
date_created: 2019-03-10T22:59:21Z
date_published: 2019-02-26T00:00:00Z
date_updated: 2023-09-19T14:46:47Z
day: '26'
ddc:
- '570'
department:
- _id: Bio
doi: 10.1371/journal.pone.0212699
external_id:
  isi:
  - '000459712100022'
file:
- access_level: open_access
  checksum: b885de050ed4bb3c86f706487a47197f
  content_type: application/pdf
  creator: dernst
  date_created: 2019-03-11T16:09:23Z
  date_updated: 2020-07-14T12:47:19Z
  file_id: '6096'
  file_name: 2019_PLoSOne_Goudarzi.pdf
  file_size: 2967731
  relation: main_file
file_date_updated: 2020-07-14T12:47:19Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
issue: '2'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
publication: PLOS ONE
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Fluid dynamics during bleb formation in migrating cells in vivo
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 14
year: '2019'
...
---
_id: '9784'
abstract:
- lang: eng
  text: 'Additional file 1: Table S1. Kinetics of MDA-MB-231 cell growth in either
    the presence or absence of 100Â mg/L glyphosate. Cell counts are given at day-1
    of seeding flasks and following 6-days of continuous culture. Note: no differences
    in cell numbers were observed between negative control and glyphosate treated
    cultures.'
article_processing_charge: No
author:
- first_name: Michael N.
  full_name: Antoniou, Michael N.
  last_name: Antoniou
- first_name: Armel
  full_name: Nicolas, Armel
  id: 2A103192-F248-11E8-B48F-1D18A9856A87
  last_name: Nicolas
- first_name: Robin
  full_name: Mesnage, Robin
  last_name: Mesnage
- first_name: Martina
  full_name: Biserni, Martina
  last_name: Biserni
- first_name: Francesco V.
  full_name: Rao, Francesco V.
  last_name: Rao
- first_name: Cristina Vazquez
  full_name: Martin, Cristina Vazquez
  last_name: Martin
citation:
  ama: Antoniou MN, Nicolas A, Mesnage R, Biserni M, Rao FV, Martin CV. MOESM1 of
    Glyphosate does not substitute for glycine in proteins of actively dividing mammalian
    cells. 2019. doi:<a href="https://doi.org/10.6084/m9.figshare.9411761.v1">10.6084/m9.figshare.9411761.v1</a>
  apa: Antoniou, M. N., Nicolas, A., Mesnage, R., Biserni, M., Rao, F. V., &#38; Martin,
    C. V. (2019). MOESM1 of Glyphosate does not substitute for glycine in proteins
    of actively dividing mammalian cells. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.9411761.v1">https://doi.org/10.6084/m9.figshare.9411761.v1</a>
  chicago: Antoniou, Michael N., Armel Nicolas, Robin Mesnage, Martina Biserni, Francesco
    V. Rao, and Cristina Vazquez Martin. “MOESM1 of Glyphosate Does Not Substitute
    for Glycine in Proteins of Actively Dividing Mammalian Cells.” Springer Nature,
    2019. <a href="https://doi.org/10.6084/m9.figshare.9411761.v1">https://doi.org/10.6084/m9.figshare.9411761.v1</a>.
  ieee: M. N. Antoniou, A. Nicolas, R. Mesnage, M. Biserni, F. V. Rao, and C. V. Martin,
    “MOESM1 of Glyphosate does not substitute for glycine in proteins of actively
    dividing mammalian cells.” Springer Nature, 2019.
  ista: Antoniou MN, Nicolas A, Mesnage R, Biserni M, Rao FV, Martin CV. 2019. MOESM1
    of Glyphosate does not substitute for glycine in proteins of actively dividing
    mammalian cells, Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.9411761.v1">10.6084/m9.figshare.9411761.v1</a>.
  mla: Antoniou, Michael N., et al. <i>MOESM1 of Glyphosate Does Not Substitute for
    Glycine in Proteins of Actively Dividing Mammalian Cells</i>. Springer Nature,
    2019, doi:<a href="https://doi.org/10.6084/m9.figshare.9411761.v1">10.6084/m9.figshare.9411761.v1</a>.
  short: M.N. Antoniou, A. Nicolas, R. Mesnage, M. Biserni, F.V. Rao, C.V. Martin,
    (2019).
date_created: 2021-08-06T08:14:05Z
date_published: 2019-08-09T00:00:00Z
date_updated: 2023-02-23T12:52:29Z
day: '09'
department:
- _id: LifeSc
doi: 10.6084/m9.figshare.9411761.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.9411761.v1
month: '08'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
  record:
  - id: '6819'
    relation: used_in_publication
    status: public
status: public
title: MOESM1 of Glyphosate does not substitute for glycine in proteins of actively
  dividing mammalian cells
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '6607'
abstract:
- lang: eng
  text: Acute myeloid leukemia (AML) is a heterogeneous disease with respect to its
    genetic and molecular basis and to patients´ outcome. Clinical, cytogenetic, and
    mutational data are used to classify patients into risk groups with different
    survival, however, within-group heterogeneity is still an issue. Here, we used
    a robust likelihood-based survival modeling approach and publicly available gene
    expression data to identify a minimal number of genes whose combined expression
    values were prognostic of overall survival. The resulting gene expression signature
    (4-GES) consisted of 4 genes (SOCS2, IL2RA, NPDC1, PHGDH), predicted patient survival
    as an independent prognostic parameter in several cohorts of AML patients (total,
    1272 patients), and further refined prognostication based on the European Leukemia
    Net classification. An oncogenic role of the top scoring gene in this signature,
    SOCS2, was investigated using MLL-AF9 and Flt3-ITD/NPM1c driven mouse models of
    AML. SOCS2 promoted leukemogenesis as well as the abundance, quiescence, and activity
    of AML stem cells. Overall, the 4-GES represents a highly discriminating prognostic
    parameter in AML, whose clinical applicability is greatly enhanced by its small
    number of genes. The newly established role of SOCS2 in leukemia aggressiveness
    and stemness raises the possibility that the signature might even be exploitable
    therapeutically.
article_number: '9139'
article_processing_charge: No
author:
- first_name: Chi Huu
  full_name: Nguyen, Chi Huu
  last_name: Nguyen
- first_name: Tobias
  full_name: Glüxam, Tobias
  last_name: Glüxam
- first_name: Angela
  full_name: Schlerka, Angela
  last_name: Schlerka
- first_name: Katharina
  full_name: Bauer, Katharina
  id: 2ED6B14C-F248-11E8-B48F-1D18A9856A87
  last_name: Bauer
- first_name: Alexander M.
  full_name: Grandits, Alexander M.
  last_name: Grandits
- first_name: Hubert
  full_name: Hackl, Hubert
  last_name: Hackl
- first_name: Oliver
  full_name: Dovey, Oliver
  last_name: Dovey
- first_name: Sabine
  full_name: Zöchbauer-Müller, Sabine
  last_name: Zöchbauer-Müller
- first_name: Jonathan L.
  full_name: Cooper, Jonathan L.
  last_name: Cooper
- first_name: George S.
  full_name: Vassiliou, George S.
  last_name: Vassiliou
- first_name: Dagmar
  full_name: Stoiber, Dagmar
  last_name: Stoiber
- first_name: Rotraud
  full_name: Wieser, Rotraud
  last_name: Wieser
- first_name: Gerwin
  full_name: Heller, Gerwin
  last_name: Heller
citation:
  ama: Nguyen CH, Glüxam T, Schlerka A, et al. SOCS2 is part of a highly prognostic
    4-gene signature in AML and promotes disease aggressiveness. <i>Scientific Reports</i>.
    2019;9(1). doi:<a href="https://doi.org/10.1038/s41598-019-45579-0">10.1038/s41598-019-45579-0</a>
  apa: Nguyen, C. H., Glüxam, T., Schlerka, A., Bauer, K., Grandits, A. M., Hackl,
    H., … Heller, G. (2019). SOCS2 is part of a highly prognostic 4-gene signature
    in AML and promotes disease aggressiveness. <i>Scientific Reports</i>. Nature
    Publishing Group. <a href="https://doi.org/10.1038/s41598-019-45579-0">https://doi.org/10.1038/s41598-019-45579-0</a>
  chicago: Nguyen, Chi Huu, Tobias Glüxam, Angela Schlerka, Katharina Bauer, Alexander
    M. Grandits, Hubert Hackl, Oliver Dovey, et al. “SOCS2 Is Part of a Highly Prognostic
    4-Gene Signature in AML and Promotes Disease Aggressiveness.” <i>Scientific Reports</i>.
    Nature Publishing Group, 2019. <a href="https://doi.org/10.1038/s41598-019-45579-0">https://doi.org/10.1038/s41598-019-45579-0</a>.
  ieee: C. H. Nguyen <i>et al.</i>, “SOCS2 is part of a highly prognostic 4-gene signature
    in AML and promotes disease aggressiveness,” <i>Scientific Reports</i>, vol. 9,
    no. 1. Nature Publishing Group, 2019.
  ista: Nguyen CH, Glüxam T, Schlerka A, Bauer K, Grandits AM, Hackl H, Dovey O, Zöchbauer-Müller
    S, Cooper JL, Vassiliou GS, Stoiber D, Wieser R, Heller G. 2019. SOCS2 is part
    of a highly prognostic 4-gene signature in AML and promotes disease aggressiveness.
    Scientific Reports. 9(1), 9139.
  mla: Nguyen, Chi Huu, et al. “SOCS2 Is Part of a Highly Prognostic 4-Gene Signature
    in AML and Promotes Disease Aggressiveness.” <i>Scientific Reports</i>, vol. 9,
    no. 1, 9139, Nature Publishing Group, 2019, doi:<a href="https://doi.org/10.1038/s41598-019-45579-0">10.1038/s41598-019-45579-0</a>.
  short: C.H. Nguyen, T. Glüxam, A. Schlerka, K. Bauer, A.M. Grandits, H. Hackl, O.
    Dovey, S. Zöchbauer-Müller, J.L. Cooper, G.S. Vassiliou, D. Stoiber, R. Wieser,
    G. Heller, Scientific Reports 9 (2019).
date_created: 2019-07-07T21:59:19Z
date_published: 2019-06-24T00:00:00Z
date_updated: 2023-08-28T12:26:51Z
day: '24'
ddc:
- '576'
department:
- _id: PreCl
doi: 10.1038/s41598-019-45579-0
external_id:
  isi:
  - '000472597400042'
file:
- access_level: open_access
  checksum: 3283522fffadf4b5fc8c7adfe3ba4564
  content_type: application/pdf
  creator: kschuh
  date_created: 2019-07-08T15:15:28Z
  date_updated: 2020-07-14T12:47:34Z
  file_id: '6623'
  file_name: nature_2019_Nguyen.pdf
  file_size: 2017352
  relation: main_file
file_date_updated: 2020-07-14T12:47:34Z
has_accepted_license: '1'
intvolume: '         9'
isi: 1
issue: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
publication: Scientific Reports
publication_status: published
publisher: Nature Publishing Group
quality_controlled: '1'
scopus_import: '1'
status: public
title: SOCS2 is part of a highly prognostic 4-gene signature in AML and promotes disease
  aggressiveness
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 9
year: '2019'
...
---
_id: '6819'
abstract:
- lang: eng
  text: Glyphosate (N-phosphonomethyl glycine) and its commercial herbicide formulations
    have been shown to exert toxicity via various mechanisms. It has been asserted
    that glyphosate substitutes for glycine in polypeptide chains leading to protein
    misfolding and toxicity. However, as no direct evidence exists for glycine to
    glyphosate substitution in proteins, including in mammalian organisms, we tested
    this claim by conducting a proteomics analysis of MDA-MB-231 human breast cancer
    cells grown in the presence of 100 mg/L glyphosate for 6 days. Protein extracts
    from three treated and three untreated cell cultures were analysed as one TMT-6plex
    labelled sample, to highlight a specific pattern (+/+/+/−/−/−) of reporter intensities
    for peptides bearing true glyphosate treatment induced-post translational modifications
    as well as allowing an investigation of the total proteome.
article_number: '494'
article_processing_charge: No
author:
- first_name: Michael N.
  full_name: Antoniou, Michael N.
  last_name: Antoniou
- first_name: Armel
  full_name: Nicolas, Armel
  id: 2A103192-F248-11E8-B48F-1D18A9856A87
  last_name: Nicolas
- first_name: Robin
  full_name: Mesnage, Robin
  last_name: Mesnage
- first_name: Martina
  full_name: Biserni, Martina
  last_name: Biserni
- first_name: Francesco V.
  full_name: Rao, Francesco V.
  last_name: Rao
- first_name: Cristina Vazquez
  full_name: Martin, Cristina Vazquez
  last_name: Martin
citation:
  ama: Antoniou MN, Nicolas A, Mesnage R, Biserni M, Rao FV, Martin CV. Glyphosate
    does not substitute for glycine in proteins of actively dividing mammalian cells.
    <i>BMC Research Notes</i>. 2019;12. doi:<a href="https://doi.org/10.1186/s13104-019-4534-3">10.1186/s13104-019-4534-3</a>
  apa: Antoniou, M. N., Nicolas, A., Mesnage, R., Biserni, M., Rao, F. V., &#38; Martin,
    C. V. (2019). Glyphosate does not substitute for glycine in proteins of actively
    dividing mammalian cells. <i>BMC Research Notes</i>. BioMed Central. <a href="https://doi.org/10.1186/s13104-019-4534-3">https://doi.org/10.1186/s13104-019-4534-3</a>
  chicago: Antoniou, Michael N., Armel Nicolas, Robin Mesnage, Martina Biserni, Francesco
    V. Rao, and Cristina Vazquez Martin. “Glyphosate Does Not Substitute for Glycine
    in Proteins of Actively Dividing Mammalian Cells.” <i>BMC Research Notes</i>.
    BioMed Central, 2019. <a href="https://doi.org/10.1186/s13104-019-4534-3">https://doi.org/10.1186/s13104-019-4534-3</a>.
  ieee: M. N. Antoniou, A. Nicolas, R. Mesnage, M. Biserni, F. V. Rao, and C. V. Martin,
    “Glyphosate does not substitute for glycine in proteins of actively dividing mammalian
    cells,” <i>BMC Research Notes</i>, vol. 12. BioMed Central, 2019.
  ista: Antoniou MN, Nicolas A, Mesnage R, Biserni M, Rao FV, Martin CV. 2019. Glyphosate
    does not substitute for glycine in proteins of actively dividing mammalian cells.
    BMC Research Notes. 12, 494.
  mla: Antoniou, Michael N., et al. “Glyphosate Does Not Substitute for Glycine in
    Proteins of Actively Dividing Mammalian Cells.” <i>BMC Research Notes</i>, vol.
    12, 494, BioMed Central, 2019, doi:<a href="https://doi.org/10.1186/s13104-019-4534-3">10.1186/s13104-019-4534-3</a>.
  short: M.N. Antoniou, A. Nicolas, R. Mesnage, M. Biserni, F.V. Rao, C.V. Martin,
    BMC Research Notes 12 (2019).
date_created: 2019-08-18T22:00:39Z
date_published: 2019-08-08T00:00:00Z
date_updated: 2023-02-23T14:08:14Z
day: '08'
ddc:
- '570'
department:
- _id: LifeSc
doi: 10.1186/s13104-019-4534-3
external_id:
  pmid:
  - '31395095'
file:
- access_level: open_access
  checksum: 4a2bb7994b7f2c432bf44f5127ea3102
  content_type: application/pdf
  creator: dernst
  date_created: 2019-08-23T11:10:35Z
  date_updated: 2020-07-14T12:47:40Z
  file_id: '6829'
  file_name: 2019_BMC_Antoniou.pdf
  file_size: 1177482
  relation: main_file
file_date_updated: 2020-07-14T12:47:40Z
has_accepted_license: '1'
intvolume: '        12'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
pmid: 1
publication: BMC Research Notes
publication_identifier:
  eissn:
  - 1756-0500
publication_status: published
publisher: BioMed Central
quality_controlled: '1'
related_material:
  record:
  - id: '9784'
    relation: research_data
    status: public
scopus_import: 1
status: public
title: Glyphosate does not substitute for glycine in proteins of actively dividing
  mammalian cells
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2019'
...
---
_id: '6867'
abstract:
- lang: eng
  text: A novel magnetic scratch method achieves repeatability, reproducibility and
    geometric control greater than pipette scratch assays and closely approximating
    the precision of cell exclusion assays while inducing the cell injury inherently
    necessary for wound healing assays. The magnetic scratch is affordable, easily
    implemented and standardisable and thus may contribute toward better comparability
    of data generated in different studies and laboratories.
article_number: '12625'
article_processing_charge: No
author:
- first_name: M.
  full_name: Fenu, M.
  last_name: Fenu
- first_name: T.
  full_name: Bettermann, T.
  last_name: Bettermann
- first_name: C.
  full_name: Vogl, C.
  last_name: Vogl
- first_name: Nasser
  full_name: Darwish-Miranda, Nasser
  id: 39CD9926-F248-11E8-B48F-1D18A9856A87
  last_name: Darwish-Miranda
  orcid: 0000-0002-8821-8236
- first_name: J.
  full_name: Schramel, J.
  last_name: Schramel
- first_name: F.
  full_name: Jenner, F.
  last_name: Jenner
- first_name: I.
  full_name: Ribitsch, I.
  last_name: Ribitsch
citation:
  ama: Fenu M, Bettermann T, Vogl C, et al. A novel magnet-based scratch method for
    standardisation of wound-healing assays. <i>Scientific Reports</i>. 2019;9(1).
    doi:<a href="https://doi.org/10.1038/s41598-019-48930-7">10.1038/s41598-019-48930-7</a>
  apa: Fenu, M., Bettermann, T., Vogl, C., Darwish-Miranda, N., Schramel, J., Jenner,
    F., &#38; Ribitsch, I. (2019). A novel magnet-based scratch method for standardisation
    of wound-healing assays. <i>Scientific Reports</i>. Springer Nature. <a href="https://doi.org/10.1038/s41598-019-48930-7">https://doi.org/10.1038/s41598-019-48930-7</a>
  chicago: Fenu, M., T. Bettermann, C. Vogl, Nasser Darwish-Miranda, J. Schramel,
    F. Jenner, and I. Ribitsch. “A Novel Magnet-Based Scratch Method for Standardisation
    of Wound-Healing Assays.” <i>Scientific Reports</i>. Springer Nature, 2019. <a
    href="https://doi.org/10.1038/s41598-019-48930-7">https://doi.org/10.1038/s41598-019-48930-7</a>.
  ieee: M. Fenu <i>et al.</i>, “A novel magnet-based scratch method for standardisation
    of wound-healing assays,” <i>Scientific Reports</i>, vol. 9, no. 1. Springer Nature,
    2019.
  ista: Fenu M, Bettermann T, Vogl C, Darwish-Miranda N, Schramel J, Jenner F, Ribitsch
    I. 2019. A novel magnet-based scratch method for standardisation of wound-healing
    assays. Scientific Reports. 9(1), 12625.
  mla: Fenu, M., et al. “A Novel Magnet-Based Scratch Method for Standardisation of
    Wound-Healing Assays.” <i>Scientific Reports</i>, vol. 9, no. 1, 12625, Springer
    Nature, 2019, doi:<a href="https://doi.org/10.1038/s41598-019-48930-7">10.1038/s41598-019-48930-7</a>.
  short: M. Fenu, T. Bettermann, C. Vogl, N. Darwish-Miranda, J. Schramel, F. Jenner,
    I. Ribitsch, Scientific Reports 9 (2019).
date_created: 2019-09-15T22:00:42Z
date_published: 2019-09-02T00:00:00Z
date_updated: 2026-04-03T09:39:11Z
day: '02'
ddc:
- '570'
department:
- _id: Bio
doi: 10.1038/s41598-019-48930-7
external_id:
  isi:
  - '000483697800007'
  pmid:
  - '31477739'
file:
- access_level: open_access
  checksum: 9cfd986d4108e288cc72276ef047ab0c
  content_type: application/pdf
  creator: dernst
  date_created: 2019-09-16T12:42:40Z
  date_updated: 2020-07-14T12:47:42Z
  file_id: '6879'
  file_name: 2019_ScientificReports_Fenu.pdf
  file_size: 3523795
  relation: main_file
file_date_updated: 2020-07-14T12:47:42Z
has_accepted_license: '1'
intvolume: '         9'
isi: 1
issue: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
pmid: 1
publication: Scientific Reports
publication_identifier:
  eissn:
  - 2045-2322
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: A novel magnet-based scratch method for standardisation of wound-healing assays
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 9
year: '2019'
...
---
_id: '7225'
abstract:
- lang: eng
  text: "This is a literature teaching resource review for biologically inspired microfluidics
    courses\r\nor exploring the diverse applications of microfluidics. The structure
    is around key papers and model\r\norganisms. While courses gradually change over
    time, a focus remains on understanding how\r\nmicrofluidics has developed as well
    as what it can and cannot do for researchers. As a primary\r\nstarting point,
    we cover micro-fluid mechanics principles and microfabrication of devices. A variety\r\nof
    applications are discussed using model prokaryotic and eukaryotic organisms from
    the set\r\nof bacteria (Escherichia coli), trypanosomes (Trypanosoma brucei),
    yeast (Saccharomyces cerevisiae),\r\nslime molds (Physarum polycephalum), worms
    (Caenorhabditis elegans), flies (Drosophila melangoster),\r\nplants (Arabidopsis
    thaliana), and mouse immune cells (Mus musculus). Other engineering and\r\nbiochemical
    methods discussed include biomimetics, organ on a chip, inkjet, droplet microfluidics,\r\nbiotic
    games, and diagnostics. While we have not yet reached the end-all lab on a chip,\r\nmicrofluidics
    can still be used effectively for specific applications."
article_number: '109'
article_processing_charge: Yes
article_type: review
author:
- first_name: Jack
  full_name: Merrin, Jack
  id: 4515C308-F248-11E8-B48F-1D18A9856A87
  last_name: Merrin
  orcid: 0000-0001-5145-4609
citation:
  ama: Merrin J. Frontiers in microfluidics, a teaching resource review. <i>Bioengineering</i>.
    2019;6(4). doi:<a href="https://doi.org/10.3390/bioengineering6040109">10.3390/bioengineering6040109</a>
  apa: Merrin, J. (2019). Frontiers in microfluidics, a teaching resource review.
    <i>Bioengineering</i>. MDPI. <a href="https://doi.org/10.3390/bioengineering6040109">https://doi.org/10.3390/bioengineering6040109</a>
  chicago: Merrin, Jack. “Frontiers in Microfluidics, a Teaching Resource Review.”
    <i>Bioengineering</i>. MDPI, 2019. <a href="https://doi.org/10.3390/bioengineering6040109">https://doi.org/10.3390/bioengineering6040109</a>.
  ieee: J. Merrin, “Frontiers in microfluidics, a teaching resource review,” <i>Bioengineering</i>,
    vol. 6, no. 4. MDPI, 2019.
  ista: Merrin J. 2019. Frontiers in microfluidics, a teaching resource review. Bioengineering.
    6(4), 109.
  mla: Merrin, Jack. “Frontiers in Microfluidics, a Teaching Resource Review.” <i>Bioengineering</i>,
    vol. 6, no. 4, 109, MDPI, 2019, doi:<a href="https://doi.org/10.3390/bioengineering6040109">10.3390/bioengineering6040109</a>.
  short: J. Merrin, Bioengineering 6 (2019).
corr_author: '1'
date_created: 2020-01-05T23:00:45Z
date_published: 2019-12-03T00:00:00Z
date_updated: 2026-04-16T08:35:28Z
day: '03'
ddc:
- '620'
department:
- _id: NanoFab
doi: 10.3390/bioengineering6040109
external_id:
  isi:
  - '000505590000024'
  pmid:
  - '31816954'
file:
- access_level: open_access
  checksum: 80f1499e2a4caccdf3aa54b137fd99a0
  content_type: application/pdf
  creator: dernst
  date_created: 2020-01-07T14:49:59Z
  date_updated: 2020-07-14T12:47:54Z
  file_id: '7243'
  file_name: 2019_Bioengineering_Merrin.pdf
  file_size: 2660780
  relation: main_file
file_date_updated: 2020-07-14T12:47:54Z
has_accepted_license: '1'
intvolume: '         6'
isi: 1
issue: '4'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
publication: Bioengineering
publication_identifier:
  eissn:
  - 2306-5354
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Frontiers in microfluidics, a teaching resource review
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 6
year: '2019'
...
---
_id: '7406'
abstract:
- lang: eng
  text: "Background\r\nSynaptic vesicles (SVs) are an integral part of the neurotransmission
    machinery, and isolation of SVs from their host neuron is necessary to reveal
    their most fundamental biochemical and functional properties in in vitro assays.
    Isolated SVs from neurons that have been genetically engineered, e.g. to introduce
    genetically encoded indicators, are not readily available but would permit new
    insights into SV structure and function. Furthermore, it is unclear if cultured
    neurons can provide sufficient starting material for SV isolation procedures.\r\n\r\nNew
    method\r\nHere, we demonstrate an efficient ex vivo procedure to obtain functional
    SVs from cultured rat cortical neurons after genetic engineering with a lentivirus.\r\n\r\nResults\r\nWe
    show that ∼108 plated cortical neurons allow isolation of suitable SV amounts
    for functional analysis and imaging. We found that SVs isolated from cultured
    neurons have neurotransmitter uptake comparable to that of SVs isolated from intact
    cortex. Using total internal reflection fluorescence (TIRF) microscopy, we visualized
    an exogenous SV-targeted marker protein and demonstrated the high efficiency of
    SV modification.\r\n\r\nComparison with existing methods\r\nObtaining SVs from
    genetically engineered neurons currently generally requires the availability of
    transgenic animals, which is constrained by technical (e.g. cost and time) and
    biological (e.g. developmental defects and lethality) limitations.\r\n\r\nConclusions\r\nThese
    results demonstrate the modification and isolation of functional SVs using cultured
    neurons and viral transduction. The ability to readily obtain SVs from genetically
    engineered neurons will permit linking in situ studies to in vitro experiments
    in a variety of genetic contexts."
acknowledged_ssus:
- _id: Bio
- _id: EM-Fac
article_processing_charge: No
article_type: original
author:
- first_name: Catherine
  full_name: Mckenzie, Catherine
  id: 3EEDE19A-F248-11E8-B48F-1D18A9856A87
  last_name: Mckenzie
- first_name: Miroslava
  full_name: Spanova, Miroslava
  id: 44A924DC-F248-11E8-B48F-1D18A9856A87
  last_name: Spanova
- first_name: Alexander J
  full_name: Johnson, Alexander J
  id: 46A62C3A-F248-11E8-B48F-1D18A9856A87
  last_name: Johnson
  orcid: 0000-0002-2739-8843
- first_name: Stephanie
  full_name: Kainrath, Stephanie
  id: 32CFBA64-F248-11E8-B48F-1D18A9856A87
  last_name: Kainrath
  orcid: 0000-0002-6709-2195
- first_name: Vanessa
  full_name: Zheden, Vanessa
  id: 39C5A68A-F248-11E8-B48F-1D18A9856A87
  last_name: Zheden
  orcid: 0000-0002-9438-4783
- first_name: Harald H.
  full_name: Sitte, Harald H.
  last_name: Sitte
- first_name: Harald L
  full_name: Janovjak, Harald L
  id: 33BA6C30-F248-11E8-B48F-1D18A9856A87
  last_name: Janovjak
  orcid: 0000-0002-8023-9315
citation:
  ama: Mckenzie C, Spanova M, Johnson AJ, et al. Isolation of synaptic vesicles from
    genetically engineered cultured neurons. <i>Journal of Neuroscience Methods</i>.
    2019;312:114-121. doi:<a href="https://doi.org/10.1016/j.jneumeth.2018.11.018">10.1016/j.jneumeth.2018.11.018</a>
  apa: Mckenzie, C., Spanova, M., Johnson, A. J., Kainrath, S., Zheden, V., Sitte,
    H. H., &#38; Janovjak, H. L. (2019). Isolation of synaptic vesicles from genetically
    engineered cultured neurons. <i>Journal of Neuroscience Methods</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.jneumeth.2018.11.018">https://doi.org/10.1016/j.jneumeth.2018.11.018</a>
  chicago: Mckenzie, Catherine, Miroslava Spanova, Alexander J Johnson, Stephanie
    Kainrath, Vanessa Zheden, Harald H. Sitte, and Harald L Janovjak. “Isolation of
    Synaptic Vesicles from Genetically Engineered Cultured Neurons.” <i>Journal of
    Neuroscience Methods</i>. Elsevier, 2019. <a href="https://doi.org/10.1016/j.jneumeth.2018.11.018">https://doi.org/10.1016/j.jneumeth.2018.11.018</a>.
  ieee: C. Mckenzie <i>et al.</i>, “Isolation of synaptic vesicles from genetically
    engineered cultured neurons,” <i>Journal of Neuroscience Methods</i>, vol. 312.
    Elsevier, pp. 114–121, 2019.
  ista: Mckenzie C, Spanova M, Johnson AJ, Kainrath S, Zheden V, Sitte HH, Janovjak
    HL. 2019. Isolation of synaptic vesicles from genetically engineered cultured
    neurons. Journal of Neuroscience Methods. 312, 114–121.
  mla: Mckenzie, Catherine, et al. “Isolation of Synaptic Vesicles from Genetically
    Engineered Cultured Neurons.” <i>Journal of Neuroscience Methods</i>, vol. 312,
    Elsevier, 2019, pp. 114–21, doi:<a href="https://doi.org/10.1016/j.jneumeth.2018.11.018">10.1016/j.jneumeth.2018.11.018</a>.
  short: C. Mckenzie, M. Spanova, A.J. Johnson, S. Kainrath, V. Zheden, H.H. Sitte,
    H.L. Janovjak, Journal of Neuroscience Methods 312 (2019) 114–121.
date_created: 2020-01-30T09:12:19Z
date_published: 2019-01-15T00:00:00Z
date_updated: 2026-04-14T08:34:33Z
day: '15'
department:
- _id: HaJa
- _id: Bio
doi: 10.1016/j.jneumeth.2018.11.018
ec_funded: 1
external_id:
  isi:
  - '000456220900013'
  pmid:
  - '30496761'
intvolume: '       312'
isi: 1
language:
- iso: eng
month: '01'
oa_version: None
page: 114-121
pmid: 1
project:
- _id: 25548C20-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '303564'
  name: Microbial Ion Channels for Synthetic Neurobiology
- _id: 26538374-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I03630
  name: Molecular mechanisms of endocytic cargo recognition in plants
- _id: 2548AE96-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: W1232
  name: Molecular Drug Targets
publication: Journal of Neuroscience Methods
publication_identifier:
  issn:
  - 0165-0270
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Isolation of synaptic vesicles from genetically engineered cultured neurons
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 312
year: '2019'
...
---
_id: '7415'
article_processing_charge: No
article_type: original
author:
- first_name: Jasmin
  full_name: Morandell, Jasmin
  id: 4739D480-F248-11E8-B48F-1D18A9856A87
  last_name: Morandell
- first_name: Armel
  full_name: Nicolas, Armel
  id: 2A103192-F248-11E8-B48F-1D18A9856A87
  last_name: Nicolas
- first_name: Lena A
  full_name: Schwarz, Lena A
  id: 29A8453C-F248-11E8-B48F-1D18A9856A87
  last_name: Schwarz
- first_name: Gaia
  full_name: Novarino, Gaia
  id: 3E57A680-F248-11E8-B48F-1D18A9856A87
  last_name: Novarino
  orcid: 0000-0002-7673-7178
citation:
  ama: Morandell J, Nicolas A, Schwarz LA, Novarino G. S.16.05 Illuminating the role
    of the e3 ubiquitin ligase cullin3 in brain development and autism. <i>European
    Neuropsychopharmacology</i>. 2019;29(Supplement 6):S11-S12. doi:<a href="https://doi.org/10.1016/j.euroneuro.2019.09.040">10.1016/j.euroneuro.2019.09.040</a>
  apa: Morandell, J., Nicolas, A., Schwarz, L. A., &#38; Novarino, G. (2019). S.16.05
    Illuminating the role of the e3 ubiquitin ligase cullin3 in brain development
    and autism. <i>European Neuropsychopharmacology</i>. Elsevier. <a href="https://doi.org/10.1016/j.euroneuro.2019.09.040">https://doi.org/10.1016/j.euroneuro.2019.09.040</a>
  chicago: Morandell, Jasmin, Armel Nicolas, Lena A Schwarz, and Gaia Novarino. “S.16.05
    Illuminating the Role of the E3 Ubiquitin Ligase Cullin3 in Brain Development
    and Autism.” <i>European Neuropsychopharmacology</i>. Elsevier, 2019. <a href="https://doi.org/10.1016/j.euroneuro.2019.09.040">https://doi.org/10.1016/j.euroneuro.2019.09.040</a>.
  ieee: J. Morandell, A. Nicolas, L. A. Schwarz, and G. Novarino, “S.16.05 Illuminating
    the role of the e3 ubiquitin ligase cullin3 in brain development and autism,”
    <i>European Neuropsychopharmacology</i>, vol. 29, no. Supplement 6. Elsevier,
    pp. S11–S12, 2019.
  ista: Morandell J, Nicolas A, Schwarz LA, Novarino G. 2019. S.16.05 Illuminating
    the role of the e3 ubiquitin ligase cullin3 in brain development and autism. European
    Neuropsychopharmacology. 29(Supplement 6), S11–S12.
  mla: Morandell, Jasmin, et al. “S.16.05 Illuminating the Role of the E3 Ubiquitin
    Ligase Cullin3 in Brain Development and Autism.” <i>European Neuropsychopharmacology</i>,
    vol. 29, no. Supplement 6, Elsevier, 2019, pp. S11–12, doi:<a href="https://doi.org/10.1016/j.euroneuro.2019.09.040">10.1016/j.euroneuro.2019.09.040</a>.
  short: J. Morandell, A. Nicolas, L.A. Schwarz, G. Novarino, European Neuropsychopharmacology
    29 (2019) S11–S12.
date_created: 2020-01-30T10:07:41Z
date_published: 2019-12-13T00:00:00Z
date_updated: 2023-09-07T14:56:17Z
day: '13'
department:
- _id: GaNo
- _id: LifeSc
doi: 10.1016/j.euroneuro.2019.09.040
external_id:
  isi:
  - '000502657500021'
intvolume: '        29'
isi: 1
issue: Supplement 6
language:
- iso: eng
month: '12'
oa_version: None
page: S11-S12
publication: European Neuropsychopharmacology
publication_identifier:
  issn:
  - 0924-977X
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: S.16.05 Illuminating the role of the e3 ubiquitin ligase cullin3 in brain development
  and autism
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 29
year: '2019'
...
---
_id: '6657'
abstract:
- lang: eng
  text: 'In this article a model is described how Open Access definitions can be formed
    on the basis of objective criteria. The common Open Access definitions such as
    "gold" and "green" are not exactly defined. This becomes a problem as soon as
    one begins to measure Open Access, for example if the development of the Open
    Access share should be monitored. This was discussed in the working group on Open
    Access Monitoring  of  the  AT2OA  project  and  the  present  model  was  developed,
    which is based on 5 critics with 4 characteristics: location, licence, version,
    embargo and conditions of the Open Access publication are taken into account.
    In the meantime, the model has also been tested in practice using R scripts, and
    the initial results are quite promising.'
article_processing_charge: No
article_type: original
author:
- first_name: Patrick
  full_name: Danowski, Patrick
  id: 2EBD1598-F248-11E8-B48F-1D18A9856A87
  last_name: Danowski
  orcid: 0000-0002-6026-4409
citation:
  ama: Danowski P. An Austrian proposal for the classification of Open Access Tuples
    (COAT) - distinguish different open access types beyond colors. <i>Mitteilungen
    der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare</i>. 2019;72(1):59-65.
    doi:<a href="https://doi.org/10.31263/voebm.v72i1.2276">10.31263/voebm.v72i1.2276</a>
  apa: Danowski, P. (2019). An Austrian proposal for the classification of Open Access
    Tuples (COAT) - distinguish different open access types beyond colors. <i>Mitteilungen
    Der Vereinigung Österreichischer Bibliothekarinnen Und Bibliothekare</i>. Vereinigung
    Österreichischer Bibliothekarinnen und Bibliothekare. <a href="https://doi.org/10.31263/voebm.v72i1.2276">https://doi.org/10.31263/voebm.v72i1.2276</a>
  chicago: Danowski, Patrick. “An Austrian Proposal for the Classification of Open
    Access Tuples (COAT) - Distinguish Different Open Access Types beyond Colors.”
    <i>Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen Und Bibliothekare</i>.
    Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare, 2019. <a href="https://doi.org/10.31263/voebm.v72i1.2276">https://doi.org/10.31263/voebm.v72i1.2276</a>.
  ieee: P. Danowski, “An Austrian proposal for the classification of Open Access Tuples
    (COAT) - distinguish different open access types beyond colors,” <i>Mitteilungen
    der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare</i>, vol.
    72, no. 1. Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare, pp.
    59–65, 2019.
  ista: Danowski P. 2019. An Austrian proposal for the classification of Open Access
    Tuples (COAT) - distinguish different open access types beyond colors. Mitteilungen
    der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare. 72(1), 59–65.
  mla: Danowski, Patrick. “An Austrian Proposal for the Classification of Open Access
    Tuples (COAT) - Distinguish Different Open Access Types beyond Colors.” <i>Mitteilungen
    Der Vereinigung Österreichischer Bibliothekarinnen Und Bibliothekare</i>, vol.
    72, no. 1, Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare, 2019,
    pp. 59–65, doi:<a href="https://doi.org/10.31263/voebm.v72i1.2276">10.31263/voebm.v72i1.2276</a>.
  short: P. Danowski, Mitteilungen Der Vereinigung Österreichischer Bibliothekarinnen
    Und Bibliothekare 72 (2019) 59–65.
corr_author: '1'
date_created: 2019-07-21T21:59:15Z
date_published: 2019-05-17T00:00:00Z
date_updated: 2026-07-07T06:28:30Z
day: '17'
ddc:
- '020'
department:
- _id: E-Lib
doi: 10.31263/voebm.v72i1.2276
file:
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  date_updated: 2020-07-14T12:47:35Z
  file_id: '6661'
  file_name: 2019_MitteilungenDerVOEB_Danowski.pdf
  file_size: 468558
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file_date_updated: 2020-07-14T12:47:35Z
has_accepted_license: '1'
intvolume: '        72'
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month: '05'
oa: 1
oa_version: Published Version
page: 59-65
publication: Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare
publication_identifier:
  eissn:
  - 1022-2588
publication_status: published
publisher: Vereinigung Österreichischer Bibliothekarinnen und Bibliothekare
quality_controlled: '1'
related_material:
  record:
  - id: '5686'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: An Austrian proposal for the classification of Open Access Tuples (COAT) -
  distinguish different open access types beyond colors
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 72
year: '2019'
...
---
_id: '6328'
abstract:
- lang: eng
  text: During metazoan development, immune surveillance and cancer dissemination,
    cells migrate in complex three-dimensional microenvironments1,2,3. These spaces
    are crowded by cells and extracellular matrix, generating mazes with differently
    sized gaps that are typically smaller than the diameter of the migrating cell4,5.
    Most mesenchymal and epithelial cells and some—but not all—cancer cells actively
    generate their migratory path using pericellular tissue proteolysis6. By contrast,
    amoeboid cells such as leukocytes use non-destructive strategies of locomotion7,
    raising the question how these extremely fast cells navigate through dense tissues.
    Here we reveal that leukocytes sample their immediate vicinity for large pore
    sizes, and are thereby able to choose the path of least resistance. This allows
    them to circumnavigate local obstacles while effectively following global directional
    cues such as chemotactic gradients. Pore-size discrimination is facilitated by
    frontward positioning of the nucleus, which enables the cells to use their bulkiest
    compartment as a mechanical gauge. Once the nucleus and the closely associated
    microtubule organizing centre pass the largest pore, cytoplasmic protrusions still
    lingering in smaller pores are retracted. These retractions are coordinated by
    dynamic microtubules; when microtubules are disrupted, migrating cells lose coherence
    and frequently fragment into migratory cytoplasmic pieces. As nuclear positioning
    in front of the microtubule organizing centre is a typical feature of amoeboid
    migration, our findings link the fundamental organization of cellular polarity
    to the strategy of locomotion.
acknowledged_ssus:
- _id: SSU
article_processing_charge: No
article_type: letter_note
author:
- first_name: Jörg
  full_name: Renkawitz, Jörg
  id: 3F0587C8-F248-11E8-B48F-1D18A9856A87
  last_name: Renkawitz
  orcid: 0000-0003-2856-3369
- first_name: Aglaja
  full_name: Kopf, Aglaja
  id: 31DAC7B6-F248-11E8-B48F-1D18A9856A87
  last_name: Kopf
  orcid: 0000-0002-2187-6656
- first_name: Julian A
  full_name: Stopp, Julian A
  id: 489E3F00-F248-11E8-B48F-1D18A9856A87
  last_name: Stopp
- first_name: Ingrid
  full_name: de Vries, Ingrid
  id: 4C7D837E-F248-11E8-B48F-1D18A9856A87
  last_name: de Vries
- first_name: Meghan K.
  full_name: Driscoll, Meghan K.
  last_name: Driscoll
- first_name: Jack
  full_name: Merrin, Jack
  id: 4515C308-F248-11E8-B48F-1D18A9856A87
  last_name: Merrin
  orcid: 0000-0001-5145-4609
- first_name: Robert
  full_name: Hauschild, Robert
  id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
  last_name: Hauschild
  orcid: 0000-0001-9843-3522
- first_name: Erik S.
  full_name: Welf, Erik S.
  last_name: Welf
- first_name: Gaudenz
  full_name: Danuser, Gaudenz
  last_name: Danuser
- first_name: Reto
  full_name: Fiolka, Reto
  last_name: Fiolka
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
citation:
  ama: Renkawitz J, Kopf A, Stopp JA, et al. Nuclear positioning facilitates amoeboid
    migration along the path of least resistance. <i>Nature</i>. 2019;568:546-550.
    doi:<a href="https://doi.org/10.1038/s41586-019-1087-5">10.1038/s41586-019-1087-5</a>
  apa: Renkawitz, J., Kopf, A., Stopp, J. A., de Vries, I., Driscoll, M. K., Merrin,
    J., … Sixt, M. K. (2019). Nuclear positioning facilitates amoeboid migration along
    the path of least resistance. <i>Nature</i>. Springer Nature. <a href="https://doi.org/10.1038/s41586-019-1087-5">https://doi.org/10.1038/s41586-019-1087-5</a>
  chicago: Renkawitz, Jörg, Aglaja Kopf, Julian A Stopp, Ingrid de Vries, Meghan K.
    Driscoll, Jack Merrin, Robert Hauschild, et al. “Nuclear Positioning Facilitates
    Amoeboid Migration along the Path of Least Resistance.” <i>Nature</i>. Springer
    Nature, 2019. <a href="https://doi.org/10.1038/s41586-019-1087-5">https://doi.org/10.1038/s41586-019-1087-5</a>.
  ieee: J. Renkawitz <i>et al.</i>, “Nuclear positioning facilitates amoeboid migration
    along the path of least resistance,” <i>Nature</i>, vol. 568. Springer Nature,
    pp. 546–550, 2019.
  ista: Renkawitz J, Kopf A, Stopp JA, de Vries I, Driscoll MK, Merrin J, Hauschild
    R, Welf ES, Danuser G, Fiolka R, Sixt MK. 2019. Nuclear positioning facilitates
    amoeboid migration along the path of least resistance. Nature. 568, 546–550.
  mla: Renkawitz, Jörg, et al. “Nuclear Positioning Facilitates Amoeboid Migration
    along the Path of Least Resistance.” <i>Nature</i>, vol. 568, Springer Nature,
    2019, pp. 546–50, doi:<a href="https://doi.org/10.1038/s41586-019-1087-5">10.1038/s41586-019-1087-5</a>.
  short: J. Renkawitz, A. Kopf, J.A. Stopp, I. de Vries, M.K. Driscoll, J. Merrin,
    R. Hauschild, E.S. Welf, G. Danuser, R. Fiolka, M.K. Sixt, Nature 568 (2019) 546–550.
date_created: 2019-04-17T06:52:28Z
date_published: 2019-04-25T00:00:00Z
date_updated: 2026-08-10T22:30:24Z
day: '25'
department:
- _id: MiSi
- _id: NanoFab
- _id: Bio
doi: 10.1038/s41586-019-1087-5
ec_funded: 1
external_id:
  isi:
  - '000465594200050'
  pmid:
  - '30944468'
intvolume: '       568'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7217284/
month: '04'
oa: 1
oa_version: Submitted Version
page: 546-550
pmid: 1
project:
- _id: 25A603A2-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '281556'
  name: Cytoskeletal force generation and force transduction of migrating leukocytes
- _id: 25FE9508-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '724373'
  name: Cellular Navigation Along Spatial Gradients
- _id: 265FAEBA-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: W01250-B20
  name: Nano-Analytics of Cellular Systems
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
- _id: 25A48D24-B435-11E9-9278-68D0E5697425
  grant_number: ALTF 1396-2014
  name: Molecular and system level view of immune cell migration
publication: Nature
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/leukocytes-use-their-nucleus-as-a-ruler-to-choose-path-of-least-resistance/
  record:
  - id: '14697'
    relation: dissertation_contains
    status: public
  - id: '6891'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Nuclear positioning facilitates amoeboid migration along the path of least
  resistance
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 568
year: '2019'
...
---
_id: '275'
abstract:
- lang: eng
  text: Lymphatic endothelial cells (LECs) release extracellular chemokines to guide
    the migration of dendritic cells. In this study, we report that LECs also release
    basolateral exosome-rich endothelial vesicles (EEVs) that are secreted in greater
    numbers in the presence of inflammatory cytokines and accumulate in the perivascular
    stroma of small lymphatic vessels in human chronic inflammatory diseases. Proteomic
    analyses of EEV fractions identified &gt; 1,700 cargo proteins and revealed a
    dominant motility-promoting protein signature. In vitro and ex vivo EEV fractions
    augmented cellular protrusion formation in a CX3CL1/fractalkine-dependent fashion
    and enhanced the directional migratory response of human dendritic cells along
    guidance cues. We conclude that perilymphatic LEC exosomes enhance exploratory
    behavior and thus promote directional migration of CX3CR1-expressing cells in
    complex tissue environments.
acknowledgement: M. Brown was supported by the Cell Communication in Health and Disease
  Graduate Study Program of the Austrian Science Fund and Medizinische Universität
  Wien, M. Sixt by the European Research Council (ERC GA 281556) and an Austrian Science
  Fund START award, K.L. Bennett by the Austrian Academy of Sciences, D.G. Jackson
  and L.A. Johnson by Unit Funding (MC_UU_12010/2) and project grants from the Medical
  Research Council (G1100134 and MR/L008610/1), and M. Detmar by the Schweizerischer
  Nationalfonds zur Förderung der Wissenschaftlichen Forschung and Advanced European
  Research Council grant LYVICAM. K. Vaahtomeri was supported by an Academy of Finland
  postdoctoral research grant (287853). This project has received funding from the
  European Union’s Horizon 2020 research and innovation program under grant agreement
  No. 668036 (RELENT).
article_processing_charge: No
author:
- first_name: Markus
  full_name: Brown, Markus
  id: 3DAB9AFC-F248-11E8-B48F-1D18A9856A87
  last_name: Brown
- first_name: Louise
  full_name: Johnson, Louise
  last_name: Johnson
- first_name: Dario
  full_name: Leone, Dario
  last_name: Leone
- first_name: Peter
  full_name: Májek, Peter
  last_name: Májek
- first_name: Kari
  full_name: Vaahtomeri, Kari
  id: 368EE576-F248-11E8-B48F-1D18A9856A87
  last_name: Vaahtomeri
  orcid: 0000-0001-7829-3518
- first_name: Daniel
  full_name: Senfter, Daniel
  last_name: Senfter
- first_name: Nora
  full_name: Bukosza, Nora
  last_name: Bukosza
- first_name: Helga
  full_name: Schachner, Helga
  last_name: Schachner
- first_name: Gabriele
  full_name: Asfour, Gabriele
  last_name: Asfour
- first_name: Brigitte
  full_name: Langer, Brigitte
  last_name: Langer
- first_name: Robert
  full_name: Hauschild, Robert
  id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
  last_name: Hauschild
  orcid: 0000-0001-9843-3522
- first_name: Katja
  full_name: Parapatics, Katja
  last_name: Parapatics
- first_name: Young
  full_name: Hong, Young
  last_name: Hong
- first_name: Keiryn
  full_name: Bennett, Keiryn
  last_name: Bennett
- first_name: Renate
  full_name: Kain, Renate
  last_name: Kain
- first_name: Michael
  full_name: Detmar, Michael
  last_name: Detmar
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
- first_name: David
  full_name: Jackson, David
  last_name: Jackson
- first_name: Dontscho
  full_name: Kerjaschki, Dontscho
  last_name: Kerjaschki
citation:
  ama: Brown M, Johnson L, Leone D, et al. Lymphatic exosomes promote dendritic cell
    migration along guidance cues. <i>Journal of Cell Biology</i>. 2018;217(6):2205-2221.
    doi:<a href="https://doi.org/10.1083/jcb.201612051">10.1083/jcb.201612051</a>
  apa: Brown, M., Johnson, L., Leone, D., Májek, P., Vaahtomeri, K., Senfter, D.,
    … Kerjaschki, D. (2018). Lymphatic exosomes promote dendritic cell migration along
    guidance cues. <i>Journal of Cell Biology</i>. Rockefeller University Press. <a
    href="https://doi.org/10.1083/jcb.201612051">https://doi.org/10.1083/jcb.201612051</a>
  chicago: Brown, Markus, Louise Johnson, Dario Leone, Peter Májek, Kari Vaahtomeri,
    Daniel Senfter, Nora Bukosza, et al. “Lymphatic Exosomes Promote Dendritic Cell
    Migration along Guidance Cues.” <i>Journal of Cell Biology</i>. Rockefeller University
    Press, 2018. <a href="https://doi.org/10.1083/jcb.201612051">https://doi.org/10.1083/jcb.201612051</a>.
  ieee: M. Brown <i>et al.</i>, “Lymphatic exosomes promote dendritic cell migration
    along guidance cues,” <i>Journal of Cell Biology</i>, vol. 217, no. 6. Rockefeller
    University Press, pp. 2205–2221, 2018.
  ista: Brown M, Johnson L, Leone D, Májek P, Vaahtomeri K, Senfter D, Bukosza N,
    Schachner H, Asfour G, Langer B, Hauschild R, Parapatics K, Hong Y, Bennett K,
    Kain R, Detmar M, Sixt MK, Jackson D, Kerjaschki D. 2018. Lymphatic exosomes promote
    dendritic cell migration along guidance cues. Journal of Cell Biology. 217(6),
    2205–2221.
  mla: Brown, Markus, et al. “Lymphatic Exosomes Promote Dendritic Cell Migration
    along Guidance Cues.” <i>Journal of Cell Biology</i>, vol. 217, no. 6, Rockefeller
    University Press, 2018, pp. 2205–21, doi:<a href="https://doi.org/10.1083/jcb.201612051">10.1083/jcb.201612051</a>.
  short: M. Brown, L. Johnson, D. Leone, P. Májek, K. Vaahtomeri, D. Senfter, N. Bukosza,
    H. Schachner, G. Asfour, B. Langer, R. Hauschild, K. Parapatics, Y. Hong, K. Bennett,
    R. Kain, M. Detmar, M.K. Sixt, D. Jackson, D. Kerjaschki, Journal of Cell Biology
    217 (2018) 2205–2221.
corr_author: '1'
date_created: 2018-12-11T11:45:33Z
date_published: 2018-04-12T00:00:00Z
date_updated: 2025-04-14T13:10:20Z
day: '12'
ddc:
- '570'
department:
- _id: MiSi
- _id: Bio
doi: 10.1083/jcb.201612051
ec_funded: 1
external_id:
  isi:
  - '000438077800026'
  pmid:
  - '29650776'
file:
- access_level: open_access
  checksum: 9c7eba51a35c62da8c13f98120b64df4
  content_type: application/pdf
  creator: dernst
  date_created: 2018-12-17T12:50:07Z
  date_updated: 2020-07-14T12:45:45Z
  file_id: '5704'
  file_name: 2018_JournalCellBiology_Brown.pdf
  file_size: 2252043
  relation: main_file
file_date_updated: 2020-07-14T12:45:45Z
has_accepted_license: '1'
intvolume: '       217'
isi: 1
issue: '6'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 2205 - 2221
pmid: 1
project:
- _id: 25A8E5EA-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Y 564-B12
  name: Cytoskeletal force generation and force transduction of migrating leukocytes
- _id: 25A603A2-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '281556'
  name: Cytoskeletal force generation and force transduction of migrating leukocytes
publication: Journal of Cell Biology
publication_status: published
publisher: Rockefeller University Press
publist_id: '7627'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Lymphatic exosomes promote dendritic cell migration along guidance cues
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 217
year: '2018'
...
---
OA_place: publisher
_id: '278'
abstract:
- lang: eng
  text: 'Consortial subscription contracts regulate the digital access to publications
    between publishers and scientific libraries. However, since a couple of years
    the tendency towards a freely accessible publishing (Open Access) intensifies.
    As a consequence of this trend the contractual relationship between licensor and
    licensee is gradually changing as well: More and more contracts exercise influence
    on open access publishing. The present study attempts to compare Austrian examples
    of consortial licence contracts, which include components of open access. It describes
    the difference between pure subscription contracts and differing innovative deals
    including open access components. Thereby it becomes obvious that for the evaluation
    of this licence contracts new methods are needed. An essential new element of
    such analyses is the evaluation of the open access publication numbers. So this
    study tries to carry out such publication analyses for Austrian open access deals
    focusing on quantitative questions: How does the number of publications evolve?
    How does the open access share change? Publications reports of the publishers
    and database queries from Scopus form the data basis. The analysis of the data
    points out that differing approaches of contracts result in highly divergent results:
    Particular deals can prioritize a saving in costs or else the increase of the
    open access rate. It is to be assumed that within the following years further
    numerous open access deals will be negotiated. The finding of this study shall
    provide guidance.'
article_processing_charge: No
author:
- first_name: Márton
  full_name: Villányi, Márton
  id: 3FFCCD3A-F248-11E8-B48F-1D18A9856A87
  last_name: Villányi
  orcid: 0000-0001-8126-0426
citation:
  ama: Villányi M. Lizenzverträge mit Open-Access-Komponenten an österreichischen
    Bibliotheken. 2018.
  apa: Villányi, M. (2018). <i>Lizenzverträge mit Open-Access-Komponenten an österreichischen
    Bibliotheken</i>. Universität Wien.
  chicago: Villányi, Márton. “Lizenzverträge mit Open-Access-Komponenten an österreichischen
    Bibliotheken.” Universität Wien, 2018.
  ieee: M. Villányi, “Lizenzverträge mit Open-Access-Komponenten an österreichischen
    Bibliotheken,” Universität Wien, 2018.
  ista: Villányi M. 2018. Lizenzverträge mit Open-Access-Komponenten an österreichischen
    Bibliotheken. Universität Wien.
  mla: Villányi, Márton. <i>Lizenzverträge mit Open-Access-Komponenten an österreichischen
    Bibliotheken</i>. Universität Wien, 2018.
  short: M. Villányi, Lizenzverträge mit Open-Access-Komponenten an österreichischen
    Bibliotheken, Universität Wien, 2018.
date_created: 2018-12-11T11:45:34Z
date_published: 2018-04-06T00:00:00Z
date_updated: 2026-06-18T18:35:07Z
day: '06'
ddc:
- '020'
department:
- _id: E-Lib
language:
- iso: ger
main_file_link:
- open_access: '1'
  url: http://othes.univie.ac.at/51113/
month: '04'
oa: 1
oa_version: Published Version
page: '94'
publication_status: published
publisher: Universität Wien
publist_id: '7624'
related_material:
  record:
  - id: '5577'
    relation: dissertation_contains
    status: public
  - id: '5574'
    relation: dissertation_contains
    status: public
  - id: '5578'
    relation: dissertation_contains
    status: public
  - id: '5579'
    relation: dissertation_contains
    status: public
  - id: '5576'
    relation: dissertation_contains
    status: public
  - id: '5575'
    relation: dissertation_contains
    status: public
  - id: '5582'
    relation: dissertation_contains
    status: public
  - id: '5581'
    relation: dissertation_contains
    status: public
  - id: '5580'
    relation: dissertation_contains
    status: public
status: public
supervisor:
- first_name: Brigitte
  full_name: Kromp, Brigitte
  last_name: Kromp
title: Lizenzverträge mit Open-Access-Komponenten an österreichischen Bibliotheken
type: dissertation
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
_id: '308'
abstract:
- lang: eng
  text: Migrating cells penetrate tissue barriers during development, inflammatory
    responses, and tumor metastasis. We study if migration in vivo in such three-dimensionally
    confined environments requires changes in the mechanical properties of the surrounding
    cells using embryonic Drosophila melanogaster hemocytes, also called macrophages,
    as a model. We find that macrophage invasion into the germband through transient
    separation of the apposing ectoderm and mesoderm requires cell deformations and
    reductions in apical tension in the ectoderm. Interestingly, the genetic pathway
    governing these mechanical shifts acts downstream of the only known tumor necrosis
    factor superfamily member in Drosophila, Eiger, and its receptor, Grindelwald.
    Eiger-Grindelwald signaling reduces levels of active Myosin in the germband ectodermal
    cortex through the localization of a Crumbs complex component, Patj (Pals-1-associated
    tight junction protein). We therefore elucidate a distinct molecular pathway that
    controls tissue tension and demonstrate the importance of such regulation for
    invasive migration in vivo.
acknowledged_ssus:
- _id: SSU
article_processing_charge: No
article_type: original
author:
- first_name: Aparna
  full_name: Ratheesh, Aparna
  id: 2F064CFE-F248-11E8-B48F-1D18A9856A87
  last_name: Ratheesh
  orcid: 0000-0001-7190-0776
- first_name: Julia
  full_name: Biebl, Julia
  id: 3CCBB46E-F248-11E8-B48F-1D18A9856A87
  last_name: Biebl
- first_name: Michael
  full_name: Smutny, Michael
  last_name: Smutny
- first_name: Jana
  full_name: Veselá, Jana
  id: 433253EE-F248-11E8-B48F-1D18A9856A87
  last_name: Veselá
- first_name: Ekaterina
  full_name: Papusheva, Ekaterina
  id: 41DB591E-F248-11E8-B48F-1D18A9856A87
  last_name: Papusheva
- first_name: Gabriel
  full_name: Krens, Gabriel
  id: 2B819732-F248-11E8-B48F-1D18A9856A87
  last_name: Krens
  orcid: 0000-0003-4761-5996
- first_name: Walter
  full_name: Kaufmann, Walter
  id: 3F99E422-F248-11E8-B48F-1D18A9856A87
  last_name: Kaufmann
  orcid: 0000-0001-9735-5315
- first_name: Attila
  full_name: György, Attila
  id: 3BCEDBE0-F248-11E8-B48F-1D18A9856A87
  last_name: György
  orcid: 0000-0002-1819-198X
- first_name: Alessandra M
  full_name: Casano, Alessandra M
  id: 3DBA3F4E-F248-11E8-B48F-1D18A9856A87
  last_name: Casano
  orcid: 0000-0002-6009-6804
- first_name: Daria E
  full_name: Siekhaus, Daria E
  id: 3D224B9E-F248-11E8-B48F-1D18A9856A87
  last_name: Siekhaus
  orcid: 0000-0001-8323-8353
citation:
  ama: Ratheesh A, Bicher J, Smutny M, et al. Drosophila TNF modulates tissue tension
    in the embryo to facilitate macrophage invasive migration. <i>Developmental Cell</i>.
    2018;45(3):331-346. doi:<a href="https://doi.org/10.1016/j.devcel.2018.04.002">10.1016/j.devcel.2018.04.002</a>
  apa: Ratheesh, A., Bicher, J., Smutny, M., Veselá, J., Papusheva, E., Krens, G.,
    … Siekhaus, D. E. (2018). Drosophila TNF modulates tissue tension in the embryo
    to facilitate macrophage invasive migration. <i>Developmental Cell</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.devcel.2018.04.002">https://doi.org/10.1016/j.devcel.2018.04.002</a>
  chicago: Ratheesh, Aparna, Julia Bicher, Michael Smutny, Jana Veselá, Ekaterina
    Papusheva, Gabriel Krens, Walter Kaufmann, Attila György, Alessandra M Casano,
    and Daria E Siekhaus. “Drosophila TNF Modulates Tissue Tension in the Embryo to
    Facilitate Macrophage Invasive Migration.” <i>Developmental Cell</i>. Elsevier,
    2018. <a href="https://doi.org/10.1016/j.devcel.2018.04.002">https://doi.org/10.1016/j.devcel.2018.04.002</a>.
  ieee: A. Ratheesh <i>et al.</i>, “Drosophila TNF modulates tissue tension in the
    embryo to facilitate macrophage invasive migration,” <i>Developmental Cell</i>,
    vol. 45, no. 3. Elsevier, pp. 331–346, 2018.
  ista: Ratheesh A, Bicher J, Smutny M, Veselá J, Papusheva E, Krens G, Kaufmann W,
    György A, Casano AM, Siekhaus DE. 2018. Drosophila TNF modulates tissue tension
    in the embryo to facilitate macrophage invasive migration. Developmental Cell.
    45(3), 331–346.
  mla: Ratheesh, Aparna, et al. “Drosophila TNF Modulates Tissue Tension in the Embryo
    to Facilitate Macrophage Invasive Migration.” <i>Developmental Cell</i>, vol.
    45, no. 3, Elsevier, 2018, pp. 331–46, doi:<a href="https://doi.org/10.1016/j.devcel.2018.04.002">10.1016/j.devcel.2018.04.002</a>.
  short: A. Ratheesh, J. Bicher, M. Smutny, J. Veselá, E. Papusheva, G. Krens, W.
    Kaufmann, A. György, A.M. Casano, D.E. Siekhaus, Developmental Cell 45 (2018)
    331–346.
corr_author: '1'
date_created: 2018-12-11T11:45:44Z
date_published: 2018-05-07T00:00:00Z
date_updated: 2026-06-18T18:37:46Z
day: '07'
ddc:
- '570'
department:
- _id: DaSi
- _id: CaHe
- _id: Bio
- _id: EM-Fac
- _id: MiSi
doi: 10.1016/j.devcel.2018.04.002
ec_funded: 1
external_id:
  isi:
  - '000432461400009'
  pmid:
  - '29738712'
intvolume: '        45'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1016/j.devcel.2018.04.002
month: '05'
oa: 1
oa_version: Published Version
page: 331 - 346
pmid: 1
project:
- _id: 253B6E48-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P29638
  name: The role of Drosophila TNF alpha in immune cell invasion
- _id: 2536F660-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '334077'
  name: Investigating the role of transporters in invasive migration through junctions
publication: Developmental Cell
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/cells-change-tension-to-make-tissue-barriers-easier-to-get-through/
scopus_import: '1'
status: public
title: Drosophila TNF modulates tissue tension in the embryo to facilitate macrophage
  invasive migration
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 45
year: '2018'
...
---
_id: '153'
abstract:
- lang: eng
  text: Cells migrating in multicellular organisms steadily traverse complex three-dimensional
    (3D) environments. To decipher the underlying cell biology, current experimental
    setups either use simplified 2D, tissue-mimetic 3D (e.g., collagen matrices) or
    in vivo environments. While only in vivo experiments are truly physiological,
    they do not allow for precise manipulation of environmental parameters. 2D in
    vitro experiments do allow mechanical and chemical manipulations, but increasing
    evidence demonstrates substantial differences of migratory mechanisms in 2D and
    3D. Here, we describe simple, robust, and versatile “pillar forests” to investigate
    cell migration in complex but fully controllable 3D environments. Pillar forests
    are polydimethylsiloxane-based setups, in which two closely adjacent surfaces
    are interconnected by arrays of micrometer-sized pillars. Changing the pillar
    shape, size, height and the inter-pillar distance precisely manipulates microenvironmental
    parameters (e.g., pore sizes, micro-geometry, micro-topology), while being easily
    combined with chemotactic cues, surface coatings, diverse cell types and advanced
    imaging techniques. Thus, pillar forests combine the advantages of 2D cell migration
    assays with the precise definition of 3D environmental parameters.
article_processing_charge: No
author:
- first_name: Jörg
  full_name: Renkawitz, Jörg
  id: 3F0587C8-F248-11E8-B48F-1D18A9856A87
  last_name: Renkawitz
  orcid: 0000-0003-2856-3369
- first_name: Anne
  full_name: Reversat, Anne
  id: 35B76592-F248-11E8-B48F-1D18A9856A87
  last_name: Reversat
  orcid: 0000-0003-0666-8928
- first_name: Alexander F
  full_name: Leithner, Alexander F
  id: 3B1B77E4-F248-11E8-B48F-1D18A9856A87
  last_name: Leithner
  orcid: 0000-0002-1073-744X
- first_name: Jack
  full_name: Merrin, Jack
  id: 4515C308-F248-11E8-B48F-1D18A9856A87
  last_name: Merrin
  orcid: 0000-0001-5145-4609
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
citation:
  ama: 'Renkawitz J, Reversat A, Leithner AF, Merrin J, Sixt MK. Micro-engineered
    “pillar forests” to study cell migration in complex but controlled 3D environments.
    In: <i>Methods in Cell Biology</i>. Vol 147. Academic Press; 2018:79-91. doi:<a
    href="https://doi.org/10.1016/bs.mcb.2018.07.004">10.1016/bs.mcb.2018.07.004</a>'
  apa: Renkawitz, J., Reversat, A., Leithner, A. F., Merrin, J., &#38; Sixt, M. K.
    (2018). Micro-engineered “pillar forests” to study cell migration in complex but
    controlled 3D environments. In <i>Methods in Cell Biology</i> (Vol. 147, pp. 79–91).
    Academic Press. <a href="https://doi.org/10.1016/bs.mcb.2018.07.004">https://doi.org/10.1016/bs.mcb.2018.07.004</a>
  chicago: Renkawitz, Jörg, Anne Reversat, Alexander F Leithner, Jack Merrin, and
    Michael K Sixt. “Micro-Engineered ‘Pillar Forests’ to Study Cell Migration in
    Complex but Controlled 3D Environments.” In <i>Methods in Cell Biology</i>, 147:79–91.
    Academic Press, 2018. <a href="https://doi.org/10.1016/bs.mcb.2018.07.004">https://doi.org/10.1016/bs.mcb.2018.07.004</a>.
  ieee: J. Renkawitz, A. Reversat, A. F. Leithner, J. Merrin, and M. K. Sixt, “Micro-engineered
    ‘pillar forests’ to study cell migration in complex but controlled 3D environments,”
    in <i>Methods in Cell Biology</i>, vol. 147, Academic Press, 2018, pp. 79–91.
  ista: 'Renkawitz J, Reversat A, Leithner AF, Merrin J, Sixt MK. 2018.Micro-engineered
    “pillar forests” to study cell migration in complex but controlled 3D environments.
    In: Methods in Cell Biology. vol. 147, 79–91.'
  mla: Renkawitz, Jörg, et al. “Micro-Engineered ‘Pillar Forests’ to Study Cell Migration
    in Complex but Controlled 3D Environments.” <i>Methods in Cell Biology</i>, vol.
    147, Academic Press, 2018, pp. 79–91, doi:<a href="https://doi.org/10.1016/bs.mcb.2018.07.004">10.1016/bs.mcb.2018.07.004</a>.
  short: J. Renkawitz, A. Reversat, A.F. Leithner, J. Merrin, M.K. Sixt, in:, Methods
    in Cell Biology, Academic Press, 2018, pp. 79–91.
date_created: 2018-12-11T11:44:54Z
date_published: 2018-07-27T00:00:00Z
date_updated: 2025-07-10T11:51:09Z
day: '27'
department:
- _id: MiSi
- _id: NanoFab
doi: 10.1016/bs.mcb.2018.07.004
external_id:
  isi:
  - '000452412300006'
  pmid:
  - '30165964'
intvolume: '       147'
isi: 1
language:
- iso: eng
month: '07'
oa_version: None
page: 79 - 91
pmid: 1
publication: Methods in Cell Biology
publication_identifier:
  issn:
  - 0091-679X
publication_status: published
publisher: Academic Press
publist_id: '7768'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Micro-engineered “pillar forests” to study cell migration in complex but controlled
  3D environments
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 147
year: '2018'
...
---
_id: '163'
abstract:
- lang: eng
  text: For ultrafast fixation of biological samples to avoid artifacts, high-pressure
    freezing (HPF) followed by freeze substitution (FS) is preferred over chemical
    fixation at room temperature. After HPF, samples are maintained at low temperature
    during dehydration and fixation, while avoiding damaging recrystallization. This
    is a notoriously slow process. McDonald and Webb demonstrated, in 2011, that sample
    agitation during FS dramatically reduces the necessary time. Then, in 2015, we
    (H.G. and S.R.) introduced an agitation module into the cryochamber of an automated
    FS unit and demonstrated that the preparation of algae could be shortened from
    days to a couple of hours. We argued that variability in the processing, reproducibility,
    and safety issues are better addressed using automated FS units. For dissemination,
    we started low-cost manufacturing of agitation modules for two of the most widely
    used FS units, the Automatic Freeze Substitution Systems, AFS(1) and AFS2, from
    Leica Microsystems, using three dimensional (3D)-printing of the major components.
    To test them, several labs independently used the modules on a wide variety of
    specimens that had previously been processed by manual agitation, or without agitation.
    We demonstrate that automated processing with sample agitation saves time, increases
    flexibility with respect to sample requirements and protocols, and produces data
    of at least as good quality as other approaches.
article_processing_charge: No
article_type: original
author:
- first_name: Siegfried
  full_name: Reipert, Siegfried
  last_name: Reipert
- first_name: Helmuth
  full_name: Goldammer, Helmuth
  last_name: Goldammer
- first_name: Christine
  full_name: Richardson, Christine
  last_name: Richardson
- first_name: Martin
  full_name: Goldberg, Martin
  last_name: Goldberg
- first_name: Timothy
  full_name: Hawkins, Timothy
  last_name: Hawkins
- first_name: Elena
  full_name: Hollergschwandtner, Elena
  id: 3C054040-F248-11E8-B48F-1D18A9856A87
  last_name: Hollergschwandtner
- first_name: Walter
  full_name: Kaufmann, Walter
  id: 3F99E422-F248-11E8-B48F-1D18A9856A87
  last_name: Kaufmann
  orcid: 0000-0001-9735-5315
- first_name: Sebastian
  full_name: Antreich, Sebastian
  last_name: Antreich
- first_name: York
  full_name: Stierhof, York
  last_name: Stierhof
citation:
  ama: 'Reipert S, Goldammer H, Richardson C, et al. Agitation modules: Flexible means
    to accelerate automated freeze substitution. <i>Journal of Histochemistry and
    Cytochemistry</i>. 2018;66(12):903-921. doi:<a href="https://doi.org/10.1369/0022155418786698">10.1369/0022155418786698</a>'
  apa: 'Reipert, S., Goldammer, H., Richardson, C., Goldberg, M., Hawkins, T., Saeckl,
    E., … Stierhof, Y. (2018). Agitation modules: Flexible means to accelerate automated
    freeze substitution. <i>Journal of Histochemistry and Cytochemistry</i>. SAGE
    Publications. <a href="https://doi.org/10.1369/0022155418786698">https://doi.org/10.1369/0022155418786698</a>'
  chicago: 'Reipert, Siegfried, Helmuth Goldammer, Christine Richardson, Martin Goldberg,
    Timothy Hawkins, Elena Saeckl, Walter Kaufmann, Sebastian Antreich, and York Stierhof.
    “Agitation Modules: Flexible Means to Accelerate Automated Freeze Substitution.”
    <i>Journal of Histochemistry and Cytochemistry</i>. SAGE Publications, 2018. <a
    href="https://doi.org/10.1369/0022155418786698">https://doi.org/10.1369/0022155418786698</a>.'
  ieee: 'S. Reipert <i>et al.</i>, “Agitation modules: Flexible means to accelerate
    automated freeze substitution,” <i>Journal of Histochemistry and Cytochemistry</i>,
    vol. 66, no. 12. SAGE Publications, pp. 903–921, 2018.'
  ista: 'Reipert S, Goldammer H, Richardson C, Goldberg M, Hawkins T, Saeckl E, Kaufmann
    W, Antreich S, Stierhof Y. 2018. Agitation modules: Flexible means to accelerate
    automated freeze substitution. Journal of Histochemistry and Cytochemistry. 66(12),
    903–921.'
  mla: 'Reipert, Siegfried, et al. “Agitation Modules: Flexible Means to Accelerate
    Automated Freeze Substitution.” <i>Journal of Histochemistry and Cytochemistry</i>,
    vol. 66, no. 12, SAGE Publications, 2018, pp. 903–21, doi:<a href="https://doi.org/10.1369/0022155418786698">10.1369/0022155418786698</a>.'
  short: S. Reipert, H. Goldammer, C. Richardson, M. Goldberg, T. Hawkins, E. Saeckl,
    W. Kaufmann, S. Antreich, Y. Stierhof, Journal of Histochemistry and Cytochemistry
    66 (2018) 903–921.
date_created: 2018-12-11T11:44:57Z
date_published: 2018-12-01T00:00:00Z
date_updated: 2026-06-18T17:50:00Z
day: '01'
ddc:
- '570'
department:
- _id: RySh
- _id: EM-Fac
doi: 10.1369/0022155418786698
external_id:
  isi:
  - '000452277700005'
  pmid:
  - '29969056'
intvolume: '        66'
isi: 1
issue: '12'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1369/0022155418786698
month: '12'
oa: 1
oa_version: Published Version
page: 903-921
pmid: 1
publication: Journal of Histochemistry and Cytochemistry
publication_identifier:
  issn:
  - 0022-1554
publication_status: published
publisher: SAGE Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Agitation modules: Flexible means to accelerate automated freeze substitution'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 66
year: '2018'
...
---
_id: '192'
abstract:
- lang: eng
  text: The phytohormone auxin is the information carrier in a plethora of developmental
    and physiological processes in plants(1). It has been firmly established that
    canonical, nuclear auxin signalling acts through regulation of gene transcription(2).
    Here, we combined microfluidics, live imaging, genetic engineering and computational
    modelling to reanalyse the classical case of root growth inhibition(3) by auxin.
    We show that Arabidopsis roots react to addition and removal of auxin by extremely
    rapid adaptation of growth rate. This process requires intracellular auxin perception
    but not transcriptional reprogramming. The formation of the canonical TIR1/AFB-Aux/IAA
    co-receptor complex is required for the growth regulation, hinting to a novel,
    non-transcriptional branch of this signalling pathway. Our results challenge the
    current understanding of root growth regulation by auxin and suggest another,
    presumably non-transcriptional, signalling output of the canonical auxin pathway.
article_processing_charge: No
article_type: original
author:
- first_name: Matyas
  full_name: Fendrych, Matyas
  id: 43905548-F248-11E8-B48F-1D18A9856A87
  last_name: Fendrych
  orcid: 0000-0002-9767-8699
- first_name: Maria
  full_name: Akhmanova, Maria
  id: 3425EC26-F248-11E8-B48F-1D18A9856A87
  last_name: Akhmanova
  orcid: 0000-0003-1522-3162
- first_name: Jack
  full_name: Merrin, Jack
  id: 4515C308-F248-11E8-B48F-1D18A9856A87
  last_name: Merrin
  orcid: 0000-0001-5145-4609
- first_name: Matous
  full_name: Glanc, Matous
  last_name: Glanc
- first_name: Shinya
  full_name: Hagihara, Shinya
  last_name: Hagihara
- first_name: Koji
  full_name: Takahashi, Koji
  last_name: Takahashi
- first_name: Naoyuki
  full_name: Uchida, Naoyuki
  last_name: Uchida
- first_name: Keiko U
  full_name: Torii, Keiko U
  last_name: Torii
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
citation:
  ama: Fendrych M, Akhmanova M, Merrin J, et al. Rapid and reversible root growth
    inhibition by TIR1 auxin signalling. <i>Nature Plants</i>. 2018;4(7):453-459.
    doi:<a href="https://doi.org/10.1038/s41477-018-0190-1">10.1038/s41477-018-0190-1</a>
  apa: Fendrych, M., Akhmanova, M., Merrin, J., Glanc, M., Hagihara, S., Takahashi,
    K., … Friml, J. (2018). Rapid and reversible root growth inhibition by TIR1 auxin
    signalling. <i>Nature Plants</i>. Springer Nature. <a href="https://doi.org/10.1038/s41477-018-0190-1">https://doi.org/10.1038/s41477-018-0190-1</a>
  chicago: Fendrych, Matyas, Maria Akhmanova, Jack Merrin, Matous Glanc, Shinya Hagihara,
    Koji Takahashi, Naoyuki Uchida, Keiko U Torii, and Jiří Friml. “Rapid and Reversible
    Root Growth Inhibition by TIR1 Auxin Signalling.” <i>Nature Plants</i>. Springer
    Nature, 2018. <a href="https://doi.org/10.1038/s41477-018-0190-1">https://doi.org/10.1038/s41477-018-0190-1</a>.
  ieee: M. Fendrych <i>et al.</i>, “Rapid and reversible root growth inhibition by
    TIR1 auxin signalling,” <i>Nature Plants</i>, vol. 4, no. 7. Springer Nature,
    pp. 453–459, 2018.
  ista: Fendrych M, Akhmanova M, Merrin J, Glanc M, Hagihara S, Takahashi K, Uchida
    N, Torii KU, Friml J. 2018. Rapid and reversible root growth inhibition by TIR1
    auxin signalling. Nature Plants. 4(7), 453–459.
  mla: Fendrych, Matyas, et al. “Rapid and Reversible Root Growth Inhibition by TIR1
    Auxin Signalling.” <i>Nature Plants</i>, vol. 4, no. 7, Springer Nature, 2018,
    pp. 453–59, doi:<a href="https://doi.org/10.1038/s41477-018-0190-1">10.1038/s41477-018-0190-1</a>.
  short: M. Fendrych, M. Akhmanova, J. Merrin, M. Glanc, S. Hagihara, K. Takahashi,
    N. Uchida, K.U. Torii, J. Friml, Nature Plants 4 (2018) 453–459.
date_created: 2018-12-11T11:45:07Z
date_published: 2018-06-25T00:00:00Z
date_updated: 2023-09-15T12:11:03Z
day: '25'
department:
- _id: JiFr
- _id: DaSi
- _id: NanoFab
doi: 10.1038/s41477-018-0190-1
external_id:
  isi:
  - '000443221200017'
  pmid:
  - '29942048'
intvolume: '         4'
isi: 1
issue: '7'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pubmed/29942048
month: '06'
oa: 1
oa_version: Submitted Version
page: 453 - 459
pmid: 1
publication: Nature Plants
publication_status: published
publisher: Springer Nature
publist_id: '7728'
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/new-mechanism-for-the-plant-hormone-auxin-discovered/
scopus_import: '1'
status: public
title: Rapid and reversible root growth inhibition by TIR1 auxin signalling
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 4
year: '2018'
...
---
_id: '437'
abstract:
- lang: eng
  text: Dendritic cells (DCs) are sentinels of the adaptive immune system that reside
    in peripheral organs of mammals. Upon pathogen encounter, they undergo maturation
    and up-regulate the chemokine receptor CCR7 that guides them along gradients of
    its chemokine ligands CCL19 and 21 to the next draining lymph node. There, DCs
    present peripherally acquired antigen to naïve T cells, thereby triggering adaptive
    immunity.
acknowledged_ssus:
- _id: SSU
acknowledgement: "This work was supported by grants of the European Research Council
  (ERC CoG 724373) and the Austrian Science Fund (FWF) to M.S. We thank the scientific
  support units at IST Austria for excellent technical support.\r\nWe thank the  scientific
  \ support units at IST Austria for excellent technical support.   "
article_processing_charge: Yes (via OA deal)
author:
- first_name: Alexander F
  full_name: Leithner, Alexander F
  id: 3B1B77E4-F248-11E8-B48F-1D18A9856A87
  last_name: Leithner
  orcid: 0000-0002-1073-744X
- first_name: Jörg
  full_name: Renkawitz, Jörg
  id: 3F0587C8-F248-11E8-B48F-1D18A9856A87
  last_name: Renkawitz
  orcid: 0000-0003-2856-3369
- first_name: Ingrid
  full_name: De Vries, Ingrid
  id: 4C7D837E-F248-11E8-B48F-1D18A9856A87
  last_name: De Vries
- first_name: Robert
  full_name: Hauschild, Robert
  id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
  last_name: Hauschild
  orcid: 0000-0001-9843-3522
- first_name: Hans
  full_name: Haecker, Hans
  last_name: Haecker
- first_name: Michael K
  full_name: Sixt, Michael K
  id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
  last_name: Sixt
  orcid: 0000-0002-6620-9179
citation:
  ama: Leithner AF, Renkawitz J, de Vries I, Hauschild R, Haecker H, Sixt MK. Fast
    and efficient genetic engineering of hematopoietic precursor cells for the study
    of dendritic cell migration. <i>European Journal of Immunology</i>. 2018;48(6):1074-1077.
    doi:<a href="https://doi.org/10.1002/eji.201747358">10.1002/eji.201747358</a>
  apa: Leithner, A. F., Renkawitz, J., de Vries, I., Hauschild, R., Haecker, H., &#38;
    Sixt, M. K. (2018). Fast and efficient genetic engineering of hematopoietic precursor
    cells for the study of dendritic cell migration. <i>European Journal of Immunology</i>.
    Wiley-Blackwell. <a href="https://doi.org/10.1002/eji.201747358">https://doi.org/10.1002/eji.201747358</a>
  chicago: Leithner, Alexander F, Jörg Renkawitz, Ingrid de Vries, Robert Hauschild,
    Hans Haecker, and Michael K Sixt. “Fast and Efficient Genetic Engineering of Hematopoietic
    Precursor Cells for the Study of Dendritic Cell Migration.” <i>European Journal
    of Immunology</i>. Wiley-Blackwell, 2018. <a href="https://doi.org/10.1002/eji.201747358">https://doi.org/10.1002/eji.201747358</a>.
  ieee: A. F. Leithner, J. Renkawitz, I. de Vries, R. Hauschild, H. Haecker, and M.
    K. Sixt, “Fast and efficient genetic engineering of hematopoietic precursor cells
    for the study of dendritic cell migration,” <i>European Journal of Immunology</i>,
    vol. 48, no. 6. Wiley-Blackwell, pp. 1074–1077, 2018.
  ista: Leithner AF, Renkawitz J, de Vries I, Hauschild R, Haecker H, Sixt MK. 2018.
    Fast and efficient genetic engineering of hematopoietic precursor cells for the
    study of dendritic cell migration. European Journal of Immunology. 48(6), 1074–1077.
  mla: Leithner, Alexander F., et al. “Fast and Efficient Genetic Engineering of Hematopoietic
    Precursor Cells for the Study of Dendritic Cell Migration.” <i>European Journal
    of Immunology</i>, vol. 48, no. 6, Wiley-Blackwell, 2018, pp. 1074–77, doi:<a
    href="https://doi.org/10.1002/eji.201747358">10.1002/eji.201747358</a>.
  short: A.F. Leithner, J. Renkawitz, I. de Vries, R. Hauschild, H. Haecker, M.K.
    Sixt, European Journal of Immunology 48 (2018) 1074–1077.
corr_author: '1'
date_created: 2018-12-11T11:46:28Z
date_published: 2018-02-13T00:00:00Z
date_updated: 2025-04-14T07:42:07Z
day: '13'
ddc:
- '570'
department:
- _id: MiSi
- _id: Bio
doi: 10.1002/eji.201747358
ec_funded: 1
external_id:
  isi:
  - '000434963700016'
file:
- access_level: open_access
  checksum: 9d5b74cd016505aeb9a4c2d33bbedaeb
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:13:56Z
  date_updated: 2020-07-14T12:46:27Z
  file_id: '5044'
  file_name: IST-2018-1067-v1+2_Leithner_et_al-2018-European_Journal_of_Immunology.pdf
  file_size: 590106
  relation: main_file
file_date_updated: 2020-07-14T12:46:27Z
has_accepted_license: '1'
intvolume: '        48'
isi: 1
issue: '6'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 1074 - 1077
project:
- _id: 25FE9508-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '724373'
  name: Cellular Navigation Along Spatial Gradients
publication: European Journal of Immunology
publication_status: published
publisher: Wiley-Blackwell
publist_id: '7386'
pubrep_id: '1067'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Fast and efficient genetic engineering of hematopoietic precursor cells for
  the study of dendritic cell migration
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 48
year: '2018'
...
