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163 Publications

2023 | Journal Article | IST-REx-ID: 12106
scChIX-seq infers dynamic relationships between histone modifications in single cells
Yeung, Jake, scChIX-seq infers dynamic relationships between histone modifications in single cells. Nature Biotechnology. 2023
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2023 | Journal Article | IST-REx-ID: 12334 | OA
ArpC5 isoforms regulate Arp2/3 complex–dependent protrusion through differential Ena/VASP positioning
F. Fäßler, M. Javoor, J. Datler, H. Döring, F. Hofer, G.A. Dimchev, V.-V. Hodirnau, J. Faix, K. Rottner, F.K. Schur, Science Advances 9 (2023).
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2022 | Journal Article | IST-REx-ID: 10766 | OA
Tension-dependent stabilization of E-cadherin limits cell-cell contact expansion in zebrafish germ-layer progenitor cells
J. Slovakova, M.K. Sikora, F.N. Arslan, S. Caballero Mancebo, G. Krens, W. Kaufmann, J. Merrin, C.-P.J. Heisenberg, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
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2022 | Journal Article | IST-REx-ID: 11182 | OA
Quantifying the probing and selection of microenvironmental pores by motile immune cells
J. Kroll, M.J.A. Ruiz-Fernandez, M.B. Braun, J. Merrin, J. Renkawitz, Current Protocols 2 (2022).
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2022 | Journal Article | IST-REx-ID: 10841 | OA
Proteomic characterization of isolated Arabidopsis clathrin-coated vesicles reveals evolutionarily conserved and plant-specific components
D. Dahhan, G. Reynolds, J. Cárdenas, D. Eeckhout, A.J. Johnson, K. Yperman, W. Kaufmann, N. Vang, X. Yan, I. Hwang, A. Heese, G. De Jaeger, J. Friml, D. Van Damme, J. Pan, S. Bednarek, Plant Cell 34 (2022) 2150–2173.
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2022 | Journal Article | IST-REx-ID: 9794 | OA
Multitier mechanics control stromal adaptations in swelling lymph nodes
F.P. Assen, J. Abe, M. Hons, R. Hauschild, S. Shamipour, W. Kaufmann, T. Costanzo, G. Krens, M. Brown, B. Ludewig, S. Hippenmeyer, C.-P.J. Heisenberg, W. Weninger, E.B. Hannezo, S.A. Luther, J.V. Stein, M.K. Sixt, Nature Immunology (2022).
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2022 | Journal Article | IST-REx-ID: 10791 | OA
Tissue-wide effects override cell-intrinsic gene function in radial neuron migration
A.H. Hansen, F. Pauler, M. Riedl, C. Streicher, A.-M. Heger, S. Laukoter, C.M. Sommer, A. Nicolas, B. Hof, L.H. Tsai, T. Rülicke, S. Hippenmeyer, Oxford Open Neuroscience 1 (2022).
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2022 | Journal Article | IST-REx-ID: 11705
Surface functionalization of surfactant-free particles: A strategy to tailor the properties of nanocomposites for enhanced thermoelectric performance
C. Chang, Y. Liu, S. Lee, M. Spadaro, K.M. Koskela, T. Kleinhanns, T. Costanzo, J. Arbiol, R.L. Brutchey, M. Ibáñez, Angewandte Chemie - International Edition (2022).
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2022 | Journal Article | IST-REx-ID: 12109 | OA
Quantifying nanoscale charge density features of contact-charged surfaces with an FEM/KPFM-hybrid approach
Pertl, Felix, Quantifying nanoscale charge density features of contact-charged surfaces with an FEM/KPFM-hybrid approach. Physical Review Materials 6 (12). 2022
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2022 | Journal Article | IST-REx-ID: 12122
Multiple centrosomes enhance migration and immune cell effector functions of mature dendritic cells
Weier, Ann-Kathrin, Multiple centrosomes enhance migration and immune cell effector functions of mature dendritic cells. Journal of Cell Biology 221 (12). 2022
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2022 | Journal Article | IST-REx-ID: 12158 | OA
Single-cell sortChIC identifies hierarchical chromatin dynamics during hematopoiesis
Zeller, Peter, Single-cell sortChIC identifies hierarchical chromatin dynamics during hematopoiesis. Nature Genetics. 2022
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2022 | Journal Article | IST-REx-ID: 11444 | OA
From the prefect’s desk: Gerard van Swieten’s library correspondence
Chlebak, Clara A, From the prefect’s desk: Gerard van Swieten’s library correspondence. Library and Information History 38 (1). 2022
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2022 | Journal Article | IST-REx-ID: 10703 | OA
WASp triggers mechanosensitive actin patches to facilitate immune cell migration in dense tissues
F. Gaertner, P. Reis-Rodrigues, I. de Vries, M. Hons, J. Aguilera, M. Riedl, A.F. Leithner, S. Tasciyan, A. Kopf, J. Merrin, V. Zheden, W. Kaufmann, R. Hauschild, M.K. Sixt, Developmental Cell 57 (2022) 47–62.e9.
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2022 | Journal Article | IST-REx-ID: 12224 | OA
Muskelin regulates actin-dependent synaptic changes and intrinsic brain activity relevant to behavioral and cognitive processes
M.W. Muhia, P. YuanXiang, J. Sedlacik, J.R. Schwarz, F.F. Heisler, K.V. Gromova, E. Thies, P. Breiden, Y. Pechmann, M.R. Kreutz, M. Kneussel, Communications Biology 5 (2022).
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2022 | Journal Article | IST-REx-ID: 12228 | OA
Isoxazole nucleosides as building blocks for a plausible proto‐RNA
F. Xu, A. Crisp, T. Schinkel, R.C.A. Dubini, S. Hübner, S. Becker, F. Schelter, P. Rovo, T. Carell, Angewandte Chemie International Edition 61 (2022).
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2022 | Journal Article | IST-REx-ID: 12239 | OA
Three-dimensional visualization of planta clathrin-coated vesicles at ultrastructural resolution
A.J. Johnson, W. Kaufmann, C.M. Sommer, T. Costanzo, D.A. Dahhan, S.Y. Bednarek, J. Friml, Molecular Plant 15 (2022) 1533–1542.
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2022 | Journal Article | IST-REx-ID: 12262 | OA
Visualizing maturation factor extraction from the nascent ribosome by the AAA-ATPase Drg1
M. Prattes, I. Grishkovskaya, V.-V. Hodirnau, C. Hetzmannseder, G. Zisser, C. Sailer, V. Kargas, M. Loibl, M. Gerhalter, L. Kofler, A.J. Warren, F. Stengel, D. Haselbach, H. Bergler, Nature Structural & Molecular Biology 29 (2022) 942–953.
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2022 | Journal Article | IST-REx-ID: 12259 | OA
Crises and chaotic scattering in hydrodynamic pilot-wave experiments
G.H. Choueiri, B. Suri, J. Merrin, M. Serbyn, B. Hof, N.B. Budanur, Chaos: An Interdisciplinary Journal of Nonlinear Science 32 (2022).
View | Files available | DOI | arXiv
 
2022 | Journal Article | IST-REx-ID: 12291
ABP1–TMK auxin perception for global phosphorylation and auxin canalization
Friml J, Gallei MC, Gelová Z, Johnson AJ, Mazur E, Monzer A, Rodriguez Solovey L, Roosjen M, Verstraeten I, Živanović BD, Zou M, Fiedler L, Giannini C, Grones P, Hrtyan M, Kaufmann W, Kuhn A, Narasimhan M, Randuch M, Rýdza N, Takahashi K, Tan S, Teplova A, Kinoshita T, Weijers D, Rakusová H. 2022. ABP1–TMK auxin perception for global phosphorylation and auxin canalization. Nature. 609(7927), 575–581.
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2022 | Journal Article | IST-REx-ID: 10758 | OA
1H NMR chemical exchange techniques reveal local and global effects of oxidized cytosine derivatives
R.C.A. Dubini, E. Korytiaková, T. Schinkel, P. Heinrichs, T. Carell, P. Rovo, ACS Physical Chemistry Au 2 (2022) 237–246.
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2022 | Journal Article | IST-REx-ID: 12065 | OA
Exclusive solution discharge in Li-O₂ batteries?
C. Prehal, S. Mondal, L. Lovicar, S.A. Freunberger, ACS Energy Letters 7 (2022) 3112–3119.
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2021 | Journal Article | IST-REx-ID: 8582 | OA
Cellular requirements for PIN polar cargo clustering in Arabidopsis thaliana
H. Li, D. von Wangenheim, X. Zhang, S. Tan, N. Darwish-Miranda, S. Naramoto, K.T. Wabnik, R. de Rycke, W. Kaufmann, D.J. Gütl, R. Tejos, P. Grones, M. Ke, X. Chen, J. Dettmer, J. Friml, New Phytologist 229 (2021) 351–369.
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2021 | Journal Article | IST-REx-ID: 10607 | OA
Toll-like receptor 4 deficiency facilitates α-synuclein propagation and neurodegeneration in a mouse model of prodromal Parkinson's disease
S. Venezia, W. Kaufmann, G.K. Wenning, N. Stefanova, Parkinsonism & Related Disorders 91 (2021) 59–65.
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2021 | Journal Article | IST-REx-ID: 10836 | OA
PIPE‐cloned human IgE and IgG4 antibodies: New tools for investigating cow's milk allergy and tolerance
C.L. Pranger, J. Singer, V.K. Köhler, I. Pali‐Schöll, A. Fiocchi, S.N. Karagiannis, O. Zenarruzabeitia, F. Borrego, E. Jensen‐Jarolim, Allergy 76 (2021) 1553–1556.
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2021 | Journal Article | IST-REx-ID: 8910 | OA
Nontopological zero-bias peaks in full-shell nanowires induced by flux-tunable Andreev states
M. Valentini, F. Peñaranda, A.C. Hofmann, M. Brauns, R. Hauschild, P. Krogstrup, P. San-Jose, E. Prada, R. Aguado, G. Katsaros, Science 373 (2021).
View | Files available | DOI | Download Submitted Version (ext.) | arXiv
 
2021 | Journal Article | IST-REx-ID: 8927 | OA
Pathophysiological mechanisms of liver injury in COVID-19
A.D. Nardo, M. Schneeweiss-Gleixner, M.M. Bakail, E.D. Dixon, S.F. Lax, M. Trauner, Liver International 41 (2021) 20–32.
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2021 | Journal Article | IST-REx-ID: 9038 | OA
Extracting the infrared permittivity of SiO2 substrates locally by near-field imaging of phonon polaritons in a van der Waals crystal
P. Aguilar-Merino, G. Álvarez-Pérez, J. Taboada-Gutiérrez, J. Duan, I. Prieto Gonzalez, L.M. Álvarez-Prado, A.Y. Nikitin, J. Martín-Sánchez, P. Alonso-González, Nanomaterials 11 (2021).
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2021 | Journal Article | IST-REx-ID: 9259 | OA
Shape and function of interstitial chemokine CCL21 gradients are independent of heparan sulfates produced by lymphatic endothelium
K. Vaahtomeri, C. Moussion, R. Hauschild, M.K. Sixt, Frontiers in Immunology 12 (2021).
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2021 | Journal Article | IST-REx-ID: 9262 | OA
Optimal anchoring of a foldamer inhibitor of ASF1 histone chaperone through backbone plasticity
J. Mbianda, M.M. Bakail, C. André, G. Moal, M.E. Perrin, G. Pinna, R. Guerois, F. Becher, P. Legrand, S. Traoré, C. Douat, G. Guichard, F. Ochsenbein, Science Advances 7 (2021).
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2021 | Journal Article | IST-REx-ID: 10117 | OA
Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling
M. Artan, S. Barratt, S.M. Flynn, F. Begum, M. Skehel, A. Nicolas, M. de Bono, Journal of Biological Chemistry 297 (2021).
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2021 | Journal Article | IST-REx-ID: 10123 | OA
The importance of surface adsorbates in solution‐processed thermoelectric materials: The case of SnSe
Y. Liu, M. Calcabrini, Y. Yu, A. Genç, C. Chang, T. Costanzo, T. Kleinhanns, S. Lee, J. Llorca, O. Cojocaru‐Mirédin, M. Ibáñez, Advanced Materials 33 (2021).
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2021 | Journal Article | IST-REx-ID: 10177 | OA
Focusing of in-plane hyperbolic polaritons in van der Waals crystals with tailored infrared nanoantennas
J. Martín-Sánchez, J. Duan, J. Taboada-Gutiérrez, G. Álvarez-Pérez, K.V. Voronin, I. Prieto Gonzalez, W. Ma, Q. Bao, V.S. Volkov, R. Hillenbrand, A.Y. Nikitin, P. Alonso-González, Science Advances 7 (2021).
View | Files available | DOI | arXiv
 
2021 | Journal Article | IST-REx-ID: 10223 | OA
Cell surface and intracellular auxin signalling for H+ fluxes in root growth
L. Li, I. Verstraeten, M. Roosjen, K. Takahashi, L. Rodriguez Solovey, J. Merrin, J. Chen, L. Shabala, W. Smet, H. Ren, S. Vanneste, S. Shabala, B. De Rybel, D. Weijers, T. Kinoshita, W.M. Gray, J. Friml, Nature 599 (2021) 273–277.
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2021 | Journal Article | IST-REx-ID: 9301 | OA
In situ small-angle X-ray scattering reveals solution phase discharge of Li–O2 batteries with weakly solvating electrolytes
C. Prehal, A. Samojlov, M. Nachtnebel, L. Lovicar, M. Kriechbaum, H. Amenitsch, S.A. Freunberger, Proceedings of the National Academy of Sciences 118 (2021).
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2021 | Journal Article | IST-REx-ID: 9329 | OA
MOD: A novel machine-learning optimal-filtering method for accurate and efficient detection of subthreshold synaptic events in vivo
X. Zhang, A. Schlögl, D.H. Vandael, P.M. Jonas, Journal of Neuroscience Methods 357 (2021).
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2021 | Journal Article | IST-REx-ID: 9330 | OA
Presynaptic α2δ subunits are key organizers of glutamatergic synapses
C.L. Schöpf, C. Ablinger, S.M. Geisler, R.I. Stanika, M. Campiglio, W. Kaufmann, B. Nimmervoll, B. Schlick, J. Brockhaus, M. Missler, R. Shigemoto, G.J. Obermair, PNAS 118 (2021).
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2021 | Journal Article | IST-REx-ID: 9334 | OA
Enabling propagation of anisotropic polaritons along forbidden directions via a topological transition
J. Duan, G. Álvarez-Pérez, K.V. Voronin, I. Prieto Gonzalez, J. Taboada-Gutiérrez, V.S. Volkov, J. Martín-Sánchez, A.Y. Nikitin, P. Alonso-González, Science Advances 7 (2021).
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2021 | Journal Article | IST-REx-ID: 9361 | OA
Oligomerization and cell egress controlled by two microdomains of canine distemper virus matrix protein
M. Gast, N.P. Kadzioch, D. Milius, F. Origgi, P. Plattet, MSphere 6 (2021).
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2021 | Journal Article | IST-REx-ID: 9540 | OA
Structural basis for inhibition of the AAA-ATPase Drg1 by diazaborine
M. Prattes, I. Grishkovskaya, V.-V. Hodirnau, I. Rössler, I. Klein, C. Hetzmannseder, G. Zisser, C.C. Gruber, K. Gruber, D. Haselbach, H. Bergler, Nature Communications 12 (2021).
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2021 | Journal Article | IST-REx-ID: 9603 | OA
A genome-wide library of MADM mice for single-cell genetic mosaic analysis
X. Contreras, N. Amberg, A. Davaatseren, A.H. Hansen, J. Sonntag, L. Andersen, T. Bernthaler, C. Streicher, A.-M. Heger, R.L. Johnson, L.A. Schwarz, L. Luo, T. Rülicke, S. Hippenmeyer, Cell Reports 35 (2021).
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2021 | Journal Article | IST-REx-ID: 9607 | OA
Introduction to the EQIPD quality system
Bespalov A, Bernard R, Gilis A, Gerlach B, Guillén J, Castagné V, Lefevre IA, Ducrey F, Monk L, Bongiovanni S, Altevogt B, Arroyo-Araujo M, Bikovski L, De Bruin N, Castaños-Vélez E, Dityatev A, Emmerich CH, Fares R, Ferland-Beckham C, Froger-Colléaux C, Gailus-Durner V, Hölter SM, Hofmann MC, Kabitzke P, Kas MJ, Kurreck C, Moser P, Pietraszek M, Popik P, Potschka H, Prado Montes De Oca E, Restivo L, Riedel G, Ritskes-Hoitinga M, Samardzic J, Schunn M, Stöger C, Voikar V, Vollert J, Wever KE, Wuyts K, Macleod MR, Dirnagl U, Steckler T. 2021. Introduction to the EQIPD quality system. eLife. 10.
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2021 | Journal Article | IST-REx-ID: 9887 | OA
The TPLATE complex mediates membrane bending during plant clathrin-mediated endocytosis
A.J. Johnson, D.A. Dahhan, N. Gnyliukh, W. Kaufmann, V. Zheden, T. Costanzo, P. Mahou, M. Hrtyan, J. Wang, J.L. Aguilera Servin, D. van Damme, E. Beaurepaire, M. Loose, S.Y. Bednarek, J. Friml, Proceedings of the National Academy of Sciences 118 (2021).
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2021 | Journal Article | IST-REx-ID: 9911 | OA
QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy
Nelson G et al. 2021. QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy. Journal of Microscopy. 284(1), 56–73.
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2021 | Journal Article | IST-REx-ID: 9928 | OA
Geometric superinductance qubits: Controlling phase delocalization across a single Josephson junction
M. Peruzzo, F. Hassani, G. Szep, A. Trioni, E. Redchenko, M. Zemlicka, J.M. Fink, PRX Quantum 2 (2021) 040341.
View | Files available | DOI | arXiv
 
2021 | Journal Article | IST-REx-ID: 10179 | OA
Neurotransmitter signaling regulates distinct phases of multimodal human interneuron migration
S. Bajaj, J.A. Bagley, C.M. Sommer, A. Vertesy, S. Nagumo Wong, V. Krenn, J. Lévi-Strauss, J.A. Knoblich, EMBO Journal 40 (2021).
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2021 | Journal Article | IST-REx-ID: 10283 | OA
Towards best practices in research: Role of academic core facilities
L. Restivo, B. Gerlach, M. Tsoory, L. Bikovski, S. Badurek, C. Pitzer, I.C. Kos-Braun, A.L.M. Mausset-Bonnefont, J. Ward, M. Schunn, L.P.J.J. Noldus, A. Bespalov, V. Voikar, EMBO Reports 22 (2021).
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2021 | Journal Article | IST-REx-ID: 9822 | OA
Sequential and switchable patterning for studying cellular processes under spatiotemporal control
T. Zisis, J. Schwarz, M. Balles, M. Kretschmer, M. Nemethova, R.P. Chait, R. Hauschild, J. Lange, C.C. Guet, M.K. Sixt, S. Zahler, ACS Applied Materials and Interfaces 13 (2021) 35545–35560.
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2021 | Journal Article | IST-REx-ID: 9363 | OA
Optogenetic delivery of trophic signals in a genetic model of Parkinson's disease
Á. Inglés Prieto, N. Furthmann, S.H. Crossman, A.M. Tichy, N. Hoyer, M. Petersen, V. Zheden, J. Bicher, E. Gschaider-Reichhart, A. György, D.E. Siekhaus, P. Soba, K.F. Winklhofer, H.L. Janovjak, PLoS Genetics 17 (2021) e1009479.
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2021 | Journal Article | IST-REx-ID: 9429 | OA
Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development
J. Morandell, L.A. Schwarz, B. Basilico, S. Tasciyan, G.A. Dimchev, A. Nicolas, C.M. Sommer, C. Kreuzinger, C. Dotter, L. Knaus, Z. Dobler, E. Cacci, F.K. Schur, J.G. Danzl, G. Novarino, Nature Communications 12 (2021).
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2021 | Preprint | IST-REx-ID: 10095 | OA
Cell surface and intracellular auxin signalling for H+-fluxes in root growth
L. Li, I. Verstraeten, M. Roosjen, K. Takahashi, L. Rodriguez Solovey, J. Merrin, J. Chen, L. Shabala, W. Smet, H. Ren, S. Vanneste, S. Shabala, B. De Rybel, D. Weijers, T. Kinoshita, W.M. Gray, J. Friml, Research Square (n.d.).
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