[{"publisher":"Cambridge University Press","date_created":"2026-07-27T05:53:25Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"fulldoi":"https://doi.org/10.1017/etds.2026.10324","acknowledgement":"We thank the anonymous referee for identifying an error in an earlier\r\nversion of the paper. We gratefully acknowledge support from UKRI Frontier Research\r\nGrant EP/X033813/1, ERC grant DynAMiCS (101167561) and DFG grant 389792660 as\r\npart of TRR 248. J.O. is also affiliated with Keble College, Oxford as an Emmy Network\r\nfellow.","oa":1,"researchdata_availability":"no","supplementarymaterial":"no","citation":{"apa":"Kebis, P., LUCA, F., OUAKNINE, J., SCOONES, A., & WORRELL, J. (2026). Transcendence for Pisot morphic words over an algebraic base. Ergodic Theory and Dynamical Systems. Cambridge University Press. https://doi.org/10.1017/etds.2026.10324","mla":"Kebis, Pavol, et al. “Transcendence for Pisot Morphic Words over an Algebraic Base.” Ergodic Theory and Dynamical Systems, Cambridge University Press, 2026, pp. 1–22, doi:10.1017/etds.2026.10324.","ama":"Kebis P, LUCA F, OUAKNINE J, SCOONES A, WORRELL J. Transcendence for Pisot morphic words over an algebraic base. Ergodic Theory and Dynamical Systems. 2026:1-22. doi:10.1017/etds.2026.10324","ista":"Kebis P, LUCA F, OUAKNINE J, SCOONES A, WORRELL J. 2026. Transcendence for Pisot morphic words over an algebraic base. Ergodic Theory and Dynamical Systems., 1–22.","ieee":"P. Kebis, F. LUCA, J. OUAKNINE, A. SCOONES, and J. WORRELL, “Transcendence for Pisot morphic words over an algebraic base,” Ergodic Theory and Dynamical Systems. Cambridge University Press, pp. 1–22, 2026.","short":"P. Kebis, F. LUCA, J. OUAKNINE, A. SCOONES, J. WORRELL, Ergodic Theory and Dynamical Systems (2026) 1–22.","chicago":"Kebis, Pavol, FLORIAN LUCA, JOEL OUAKNINE, ANDREW SCOONES, and JAMES WORRELL. “Transcendence for Pisot Morphic Words over an Algebraic Base.” Ergodic Theory and Dynamical Systems. Cambridge University Press, 2026. https://doi.org/10.1017/etds.2026.10324."},"das_tickbox":"0","article_type":"original","title":"Transcendence for Pisot morphic words over an algebraic base","author":[{"last_name":"Kebis","full_name":"Kebis, Pavol","first_name":"Pavol","id":"2e0132b3-4e98-11ef-b275-cf7281c2802a"},{"full_name":"LUCA, FLORIAN","last_name":"LUCA","first_name":"FLORIAN"},{"first_name":"JOEL","full_name":"OUAKNINE, JOEL","last_name":"OUAKNINE"},{"full_name":"SCOONES, ANDREW","last_name":"SCOONES","first_name":"ANDREW"},{"first_name":"JAMES","last_name":"WORRELL","full_name":"WORRELL, JAMES"}],"publication":"Ergodic Theory and Dynamical Systems","abstract":[{"lang":"eng","text":"It is known that for a uniform morphic sequence 𝒖 =⟨𝑢𝑛⟩∞\r\n𝑛=0 and an algebraic number 𝛽 such that |𝛽| >1, the number [[𝒖]]𝛽 :=∑∞\r\n𝑛=0(𝑢𝑛/𝛽𝑛) either lies in ℚ(𝛽) or is transcendental. In this paper, we show a similar rational–transcendental dichotomy for sequences defined by irreducible Pisot morphisms on binary alphabets. Subject to the Pisot conjecture (an irreducible Pisot morphism has pure discrete spectrum), we generalise the latter result to arbitrary finite alphabets. In certain cases, we are able to show transcendence of [[𝒖]]𝛽 outright. In particular, for 𝑘 ≥2, if 𝒖 is the k-Bonacci word, then [[𝒖]]𝛽 is transcendental."}],"page":"1-22","year":"2026","_id":"22406","publication_identifier":{"issn":["0143-3857"],"eissn":["1469-4417"]},"publication_status":"epub_ahead","PlanS_conform":"1","day":"10","article_processing_charge":"Yes (in subscription journal)","mathsc":["11J81","37B10","11J87"],"arxiv":1,"date_updated":"2026-08-03T06:17:50Z","month":"07","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1017/etds.2026.10324"}],"quality_controlled":"1","ddc":["000"],"OA_type":"hybrid","date_published":"2026-07-10T00:00:00Z","type":"journal_article","oa_version":"Published Version","external_id":{"arxiv":["2405.05279"]},"language":[{"iso":"eng"}],"keyword":["balanced-pair algorithm","Cobham’s conjecture","k-Bonacci words","Pisot conjecture","subspace theorem"],"OA_place":"publisher","department":[{"_id":"ToHe"},{"_id":"GradSch"}],"status":"public","has_accepted_license":"1","scopus_import":"1","doi":"10.1017/etds.2026.10324"},{"day":"20","article_processing_charge":"No","publication_status":"published","date_updated":"2026-08-03T11:08:39Z","arxiv":1,"abstract":[{"lang":"eng","text":"Planar germanium is currently the only semiconducting platform where high-coherence spin qubits and proximity-induced superconductivity have each been demonstrated. Recent research into spin qubits in Ge/SiGe heterostructures has focused on increasing the thickness of the SiGe capping layer, reporting improvements in the electrostatic noise levels. Meanwhile, heterostructures with thinner capping layers remain rather unexplored, despite the potential advantages for proximity-induced superconductivity. Here, we study a Ge/SiGe heterostructure with a thin SiGe cap d - 4nm and investigate its viability to host low-noise quantum dots. To keep the thermal budget compatible with superconducting layers, low-temperature oxide deposition processes were developed and implemented for the gate dielectrics. The charge noise level of the fabricated devices is estimated to be 1.8 +- 1.0 μeV/ square HZ, comparable to devices fabricated on shallow heterostructures ( d - 20nm) with high-temperature deposited oxides. Low charge noise levels, together with the straightforward integration of superconductors, make this heterostructure an attractive platform for prototyping hybrid semiconducting–superconducting devices."}],"author":[{"first_name":"Maksim","id":"1fd0975f-8b61-11ed-b69e-d149334f28c5","last_name":"Borovkov","full_name":"Borovkov, Maksim"},{"first_name":"Yona A","id":"fe39122d-06bb-11ec-a33b-9e22b40e40a5","last_name":"Schell","full_name":"Schell, Yona A"},{"last_name":"Sokolova","full_name":"Sokolova, Dina","id":"2d2d62f8-72f0-11ef-b75a-8ec3e8a60032","first_name":"Dina"},{"full_name":"Roux, Kevin Etienne Robert","last_name":"Roux","first_name":"Kevin Etienne Robert","id":"53f93ea2-803f-11ed-ab7e-b283135794ef"},{"first_name":"Paul","id":"85b43b21-15b2-11ec-abd3-e2c252cc2285","last_name":"Falthansl-Scheinecker","full_name":"Falthansl-Scheinecker, Paul"},{"last_name":"Fabris","full_name":"Fabris, Giorgio","first_name":"Giorgio","id":"298cf6f3-1ff6-11ee-9fa6-d94cfa0b3352"},{"orcid":"0009-0007-5829-7707","first_name":"Devashish C","id":"de191434-4e7e-11ef-bf4b-9a056fc19fc3","full_name":"Shah, Devashish C","last_name":"Shah"},{"first_name":"Jaime","id":"e0390f72-f6e0-11ea-865d-862393336714","full_name":"Saez Mollejo, Jaime","last_name":"Saez Mollejo"},{"id":"bc4ea1dc-00ce-11ec-8a4e-b325ca8b9876","first_name":"Rodolfo","full_name":"Previdi, Rodolfo","last_name":"Previdi"},{"last_name":"Taha","full_name":"Taha, Inas","first_name":"Inas"},{"last_name":"Genç","full_name":"Genç, Aziz","first_name":"Aziz"},{"full_name":"Arbiol, Jordi","last_name":"Arbiol","first_name":"Jordi"},{"last_name":"Calcaterra","full_name":"Calcaterra, Stefano","first_name":"Stefano"},{"full_name":"Oliveira, Afonso De Cerdeira","last_name":"Oliveira","first_name":"Afonso De Cerdeira"},{"full_name":"Chrastina, Daniel","last_name":"Chrastina","first_name":"Daniel"},{"first_name":"Giovanni","full_name":"Isella, Giovanni","last_name":"Isella"},{"last_name":"Bubis","full_name":"Bubis, Anton","id":"1f6212b5-f795-11ec-9c0c-de4780302890","first_name":"Anton"},{"first_name":"Georgios","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8342-202X","last_name":"Katsaros","full_name":"Katsaros, Georgios"}],"publication":"Applied Physics Letters","title":"Low-noise quantum dots in ultra-shallow Ge/SiGe heterostructures for prototyping hybrid semiconducting–superconducting devices","publication_identifier":{"eissn":["1077-3118"],"issn":["0003-6951"]},"_id":"22619","year":"2026","das_tickbox":"1","citation":{"short":"M. Borovkov, Y.A. Schell, D. Sokolova, K.E.R. Roux, P. Falthansl-Scheinecker, G. Fabris, D.C. Shah, J. Saez Mollejo, R. Previdi, I. Taha, A. Genç, J. Arbiol, S. Calcaterra, A.D.C. Oliveira, D. Chrastina, G. Isella, A. Bubis, G. Katsaros, Applied Physics Letters 129 (2026).","chicago":"Borovkov, Maksim, Yona A Schell, Dina Sokolova, Kevin Etienne Robert Roux, Paul Falthansl-Scheinecker, Giorgio Fabris, Devashish C Shah, et al. “Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting–Superconducting Devices.” Applied Physics Letters. AIP Publishing, 2026. https://doi.org/10.1063/5.0333142.","ieee":"M. Borovkov et al., “Low-noise quantum dots in ultra-shallow Ge/SiGe heterostructures for prototyping hybrid semiconducting–superconducting devices,” Applied Physics Letters, vol. 129, no. 3. AIP Publishing, 2026.","ista":"Borovkov M, Schell YA, Sokolova D, Roux KER, Falthansl-Scheinecker P, Fabris G, Shah DC, Saez Mollejo J, Previdi R, Taha I, Genç A, Arbiol J, Calcaterra S, Oliveira ADC, Chrastina D, Isella G, Bubis A, Katsaros G. 2026. Low-noise quantum dots in ultra-shallow Ge/SiGe heterostructures for prototyping hybrid semiconducting–superconducting devices. Applied Physics Letters. 129(3), 033505.","mla":"Borovkov, Maksim, et al. “Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting–Superconducting Devices.” Applied Physics Letters, vol. 129, no. 3, 033505, AIP Publishing, 2026, doi:10.1063/5.0333142.","apa":"Borovkov, M., Schell, Y. A., Sokolova, D., Roux, K. E. R., Falthansl-Scheinecker, P., Fabris, G., … Katsaros, G. (2026). Low-noise quantum dots in ultra-shallow Ge/SiGe heterostructures for prototyping hybrid semiconducting–superconducting devices. Applied Physics Letters. AIP Publishing. https://doi.org/10.1063/5.0333142","ama":"Borovkov M, Schell YA, Sokolova D, et al. Low-noise quantum dots in ultra-shallow Ge/SiGe heterostructures for prototyping hybrid semiconducting–superconducting devices. Applied Physics Letters. 2026;129(3). doi:10.1063/5.0333142"},"supplementarymaterial":"yes","researchdata_availability":"yes","oa":1,"article_number":"033505","article_type":"original","issue":"3","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2026-08-02T22:01:53Z","publisher":"AIP Publishing","fulldoi":"https://doi.org/10.1063/5.0333142","acknowledgement":"We sincerely thank Nick van Loo, Greg Mazur, Dhananjay Joshi, and Srijit Goswami for their inputs on low-temperature HfOx deposition; Matias Urdampilleta and Daniel Jirovec for discussions; and Kristen Léonard for the careful reading of the manuscript. This research was supported by the Scientific Service Units of ISTA through resources provided by the Miba Machine Shop and the Nanofabrication facility. The authors acknowledge support from the NOMIS Foundation; the European Innovation Council Pathfinder Grant No. 101115315 (QuKiT); the FWF Projects with DOI:10.55776/F86, DOI:10.55776/PAT7682124, and DOI:10.55776/P36507; and the HE-MSCA-PF project with DOI:10.3030/101150858. ICN2 is supported by the Severo Ochoa Program from Spanish MCIN/AEI (Grant No.: CEX2021-001214-S) and is funded by the CERCA Program/Generalitat de Catalunya. ICN2 acknowledges funding from Generalitat de Catalunya (No. 2021SGR00457). We acknowledge support from the CSIC Interdisciplinary Thematic Platform (PTI+) on Quantum Technologies (PTI-QTEP+).","scopus_import":"1","related_material":{"record":[{"id":"22242","relation":"research_data","status":"public"}]},"doi":"10.1063/5.0333142","status":"public","department":[{"_id":"GeKa"},{"_id":"GradSch"},{"_id":"NanoFab"}],"project":[{"grant_number":"101115315","_id":"bdc2ca30-d553-11ed-ba76-cf164a5bb811","name":"Quantum bits with Kitaev Transmons"},{"grant_number":"F8606","name":"Center for Correlated Quantum Materials and Solid State Quantum Systems: Conventional and unconventional topological superconductors","_id":"34a66131-11ca-11ed-8bc3-a31681c6b03e"},{"name":"Superconducting spin qubits in planar Ge","grant_number":"PAT 7682124","_id":"5b9e579c-ab3d-11f0-914f-88754c5b5a3f"},{"_id":"bd8bd29e-d553-11ed-ba76-f0070d4b237a","grant_number":"P36507","name":"Merging spin and superconducting qubits in planar Ge"},{"_id":"8ea8abf7-16d5-11f0-9cad-c41e56ec8bb3","name":"Realization and Manipulation of a Planar hybrid superconducting Andreev spin qubit in Germanium","grant_number":"101150858"}],"OA_place":"repository","corr_author":"1","oa_version":"Preprint","type":"journal_article","date_published":"2026-07-20T00:00:00Z","intvolume":" 129","acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"NanoFab"}],"language":[{"iso":"eng"}],"volume":129,"external_id":{"arxiv":["2602.21363"]},"dataavailabilitystatement":"The data that support the findings of this study are openly available in Institute of Science and Technology repository at http://doi.org/10.15479/AT-ISTA-22242, Ref. 50.","month":"07","OA_type":"green","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2602.21363"}],"quality_controlled":"1"},{"quality_controlled":"1","ddc":["500"],"OA_type":"gold","file":[{"date_updated":"2026-08-03T12:12:03Z","file_name":"2026_ForumMathematics_Browning.pdf","content_type":"application/pdf","creator":"dernst","checksum":"e92a762e03f832bdca8c106a9a88ef9b","file_size":810718,"relation":"main_file","access_level":"open_access","success":1,"file_id":"22636","date_created":"2026-08-03T12:12:03Z"}],"month":"07","volume":14,"external_id":{"arxiv":["2402.07146"]},"language":[{"iso":"eng"}],"intvolume":" 14","type":"journal_article","date_published":"2026-07-22T00:00:00Z","oa_version":"Published Version","corr_author":"1","project":[{"name":"Rational curves via function field analytic number theory","grant_number":"P36278","_id":"bd8a4fdc-d553-11ed-ba76-80a0167441a3"},{"grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","name":"IST-BRIDGE: International postdoctoral program","call_identifier":"H2020"}],"OA_place":"publisher","department":[{"_id":"TiBr"},{"_id":"GradSch"}],"has_accepted_license":"1","status":"public","doi":"10.1017/fms.2026.10259","scopus_import":"1","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"acknowledgement":"While working on this paper the first two authors were supported by FWF grant (DOI 10.55776/P36278) and the third author was supported by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413, and by the National Science and Technology Council Project Grant 114-2115-M-001-010-MY2.","fulldoi":"https://doi.org/10.1017/fms.2026.10259","publisher":"Cambridge University Press","DOAJ_listed":"1","date_created":"2026-08-02T22:01:52Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","article_number":"e112","oa":1,"researchdata_availability":"no","supplementarymaterial":"no","citation":{"short":"T.D. Browning, J. Glas, V. Wang, Forum of Mathematics Sigma 14 (2026).","chicago":"Browning, Timothy D, Jakob Glas, and Victor Wang. “Sums of Three Cubes over a Function Field.” Forum of Mathematics Sigma. Cambridge University Press, 2026. https://doi.org/10.1017/fms.2026.10259.","ista":"Browning TD, Glas J, Wang V. 2026. Sums of three cubes over a function field. Forum of Mathematics Sigma. 14, e112.","mla":"Browning, Timothy D., et al. “Sums of Three Cubes over a Function Field.” Forum of Mathematics Sigma, vol. 14, e112, Cambridge University Press, 2026, doi:10.1017/fms.2026.10259.","ama":"Browning TD, Glas J, Wang V. Sums of three cubes over a function field. Forum of Mathematics Sigma. 2026;14. doi:10.1017/fms.2026.10259","apa":"Browning, T. D., Glas, J., & Wang, V. (2026). Sums of three cubes over a function field. Forum of Mathematics Sigma. Cambridge University Press. https://doi.org/10.1017/fms.2026.10259","ieee":"T. D. Browning, J. Glas, and V. Wang, “Sums of three cubes over a function field,” Forum of Mathematics Sigma, vol. 14. Cambridge University Press, 2026."},"file_date_updated":"2026-08-03T12:12:03Z","das_tickbox":"0","_id":"22618","year":"2026","publication_identifier":{"eissn":["2050-5094"]},"publication":"Forum of Mathematics Sigma","author":[{"orcid":"0000-0002-8314-0177","first_name":"Timothy D","id":"35827D50-F248-11E8-B48F-1D18A9856A87","last_name":"Browning","full_name":"Browning, Timothy D"},{"full_name":"Glas, Jakob","last_name":"Glas","id":"d6423cba-dc74-11ea-a0a7-ee61689ff5fb","first_name":"Jakob"},{"orcid":"0000-0002-0704-7026","id":"76096395-aea4-11ed-a680-ab8ebbd3f1b9","first_name":"Victor","full_name":"Wang, Victor","last_name":"Wang"}],"title":"Sums of three cubes over a function field","abstract":[{"lang":"eng","text":"We use a function field version of the circle method to prove that a positive proportion of elements in 𝔽𝑞[𝑡] are representable as a sum of three cubes of minimal degree from 𝔽𝑞[𝑡], assuming a suitable form of the Ratios Conjecture and that char(𝔽𝑞) >3. The analogue of this conjecture for quadratic Dirichlet L-functions is known for large fixed q, via recent developments in homological stability."}],"arxiv":1,"date_updated":"2026-08-03T12:13:59Z","publication_status":"published","PlanS_conform":"1","article_processing_charge":"Yes","day":"22","ec_funded":1},{"citation":{"short":"M. Borovkov, (2026).","chicago":"Borovkov, Maksim. “Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices.” Institute of Science and Technology Austria, 2026. https://doi.org/10.15479/AT-ISTA-22242.","ista":"Borovkov M. 2026. Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices, Institute of Science and Technology Austria, 10.15479/AT-ISTA-22242.","ama":"Borovkov M. Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices. 2026. doi:10.15479/AT-ISTA-22242","apa":"Borovkov, M. (2026). Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices. Institute of Science and Technology Austria. https://doi.org/10.15479/AT-ISTA-22242","mla":"Borovkov, Maksim. Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices. Institute of Science and Technology Austria, 2026, doi:10.15479/AT-ISTA-22242.","ieee":"M. Borovkov, “Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices.” Institute of Science and Technology Austria, 2026."},"file_date_updated":"2026-07-04T17:28:49Z","oa":1,"user_id":"68b8ca59-c5b3-11ee-8790-cd641c68093d","publisher":"Institute of Science and Technology Austria","date_created":"2026-07-04T17:32:27Z","fulldoi":"https://doi.org/10.15479/AT-ISTA-22242","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"day":"04","article_processing_charge":"No","date_updated":"2026-08-03T11:08:38Z","abstract":[{"lang":"eng","text":"This deposit contains the data and analysis code accompanying the publication \"Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting–Superconducting Devices\" (Borovkov et al.). The deposit includes the raw transport and current-noise measurements of three gate-defined quantum-dot devices as QCodes SQLite databases, the master table of the charge-noise (flank-method) analysis with the pointers linking every analyzed PSD trace to the raw data, the toy-model noise simulation datasets behind the supplementary figures, the archived analysis figures (PSD fits and lever-arm extractions), and the Python code reproducing the full analysis and all figures. The code is also maintained at https://github.com/ISTA-Nanoelectronics/noise_paper_public; instructions are provided in the README files."}],"contributor":[{"contributor_type":"contact_person","id":"1fd0975f-8b61-11ed-b69e-d149334f28c5","first_name":"Maksim","last_name":"Borovkov"}],"author":[{"first_name":"Maksim","id":"1fd0975f-8b61-11ed-b69e-d149334f28c5","last_name":"Borovkov","full_name":"Borovkov, Maksim"}],"title":"Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices","year":"2026","_id":"22242","doi_confirm":"1","oa_version":"Published Version","acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"NanoFab"}],"date_published":"2026-07-04T00:00:00Z","type":"research_data","month":"07","ddc":["530"],"file":[{"date_created":"2026-07-04T17:28:49Z","file_id":"22243","success":1,"access_level":"open_access","relation":"main_file","file_size":3082596099,"checksum":"2a1ea297e01a7a202a6b144d69a46eef","creator":"mborovko","content_type":"application/x-zip-compressed","file_name":"noise_paper_public_deposit.zip","date_updated":"2026-07-04T17:28:49Z"}],"doi":"10.15479/AT-ISTA-22242","related_material":{"record":[{"relation":"used_in_publication","id":"22619","status":"public"}],"link":[{"url":"https://github.com/ISTA-Nanoelectronics/noise_paper_public","relation":"research_data"}]},"has_accepted_license":"1","status":"public","OA_place":"repository","project":[{"_id":"bdc2ca30-d553-11ed-ba76-cf164a5bb811","name":"Quantum bits with Kitaev Transmons","grant_number":"101115315"},{"grant_number":"F8606","_id":"34a66131-11ca-11ed-8bc3-a31681c6b03e","name":"Center for Correlated Quantum Materials and Solid State Quantum Systems: Conventional and unconventional topological superconductors"},{"_id":"bd8bd29e-d553-11ed-ba76-f0070d4b237a","name":"Merging spin and superconducting qubits in planar Ge","grant_number":"P36507"},{"name":"Realization and Manipulation of a Planar hybrid superconducting Andreev spin qubit in Germanium","_id":"8ea8abf7-16d5-11f0-9cad-c41e56ec8bb3","grant_number":"101150858"},{"_id":"5b9e579c-ab3d-11f0-914f-88754c5b5a3f","grant_number":"PAT 7682124","name":"Superconducting spin qubits in planar Ge"}],"department":[{"_id":"GradSch"},{"_id":"GeKa"}],"corr_author":"1"},{"volume":148,"external_id":{"pmid":["42532904"]},"language":[{"iso":"eng"}],"oa_version":"Published Version","acknowledged_ssus":[{"_id":"EM-Fac"},{"_id":"NMR"},{"_id":"LifeSc"}],"intvolume":" 148","type":"journal_article","date_published":"2026-07-15T00:00:00Z","ddc":["540"],"OA_type":"hybrid","file":[{"creator":"dernst","checksum":"063314ae5ac4225ebd4436aa8707d113","content_type":"application/pdf","file_name":"2026_JACS_Lee.pdf","date_updated":"2026-08-04T06:40:17Z","date_created":"2026-08-04T06:40:17Z","access_level":"open_access","file_id":"22646","success":1,"relation":"main_file","file_size":6564594}],"quality_controlled":"1","month":"07","doi":"10.1021/jacs.6c07859","scopus_import":"1","pmid":1,"corr_author":"1","status":"public","has_accepted_license":"1","OA_place":"publisher","project":[{"_id":"9B8F7476-BA93-11EA-9121-9846C619BF3A","name":"HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery"}],"department":[{"_id":"MaIb"},{"_id":"LifeSc"},{"_id":"GradSch"},{"_id":"CaGo"}],"issue":"29","article_type":"original","researchdata_availability":"no","supplementarymaterial":"yes","citation":{"ieee":"S. Lee et al., “Reaction medium asan architect of nanocrystal superlattices,” Journal of the AmericanChemical Society, vol. 148, no. 29. American Chemical Society, pp. 31245–31252, 2026.","ista":"Lee S, Balazs D, Rayaroth Puthiyaveettil A, Horta S, Goodrich CP, Engel M, Cherniukh I, Ibáñez M. 2026. Reaction medium asan architect of nanocrystal superlattices. Journal of the AmericanChemical Society. 148(29), 31245–31252.","ama":"Lee S, Balazs D, Rayaroth Puthiyaveettil A, et al. Reaction medium asan architect of nanocrystal superlattices. Journal of the AmericanChemical Society. 2026;148(29):31245-31252. doi:10.1021/jacs.6c07859","mla":"Lee, Seungho, et al. “Reaction Medium Asan Architect of Nanocrystal Superlattices.” Journal of the AmericanChemical Society, vol. 148, no. 29, American Chemical Society, 2026, pp. 31245–52, doi:10.1021/jacs.6c07859.","apa":"Lee, S., Balazs, D., Rayaroth Puthiyaveettil, A., Horta, S., Goodrich, C. P., Engel, M., … Ibáñez, M. (2026). Reaction medium asan architect of nanocrystal superlattices. Journal of the AmericanChemical Society. American Chemical Society. https://doi.org/10.1021/jacs.6c07859","short":"S. Lee, D. Balazs, A. Rayaroth Puthiyaveettil, S. Horta, C.P. Goodrich, M. Engel, I. Cherniukh, M. Ibáñez, Journal of the AmericanChemical Society 148 (2026) 31245–31252.","chicago":"Lee, Seungho, Daniel Balazs, Aiswarya Rayaroth Puthiyaveettil, Sharona Horta, Carl Peter Goodrich, Michael Engel, Ihor Cherniukh, and Maria Ibáñez. “Reaction Medium Asan Architect of Nanocrystal Superlattices.” Journal of the AmericanChemical Society. American Chemical Society, 2026. https://doi.org/10.1021/jacs.6c07859."},"file_date_updated":"2026-08-04T06:40:17Z","das_tickbox":"0","oa":1,"fulldoi":"https://doi.org/10.1021/jacs.6c07859","acknowledgement":"ISTA and the Werner Siemens Foundation financially supported this work. The Scientific Service Units (SSU) of ISTA supported this research through resources provided by the Electron Microscopy Facility (EMF), NMR Facility, and the Lab Support Facility (LSF). M.E. acknowledges financial support from Deutsche Forschungsgemeinschaft through Collaborative Research Centre 1411. We thank Dr. Tommaso Constanzo and Tobias Kleinhanns for assistance with high-quality electron microscope image acquisition, Dr. Jeonghyun Park for providing NCs, Dr. Mariano Calcabrini for assistance with the NMR study, and Prof. Jonathan De Roo for fruitful discussions. This work benefited from the use of the SasView application, originally developed under NSF award DMR-0520547. SasView contains code developed with funding from the European Union’s Horizon 2020 research and innovation program under the SINE2020 project, grant agreement No. 654000.","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"American Chemical Society","date_created":"2026-08-04T06:29:31Z","date_updated":"2026-08-04T06:47:13Z","publication_status":"published","day":"15","PlanS_conform":"1","article_processing_charge":"Yes (via OA deal)","publication_identifier":{"issn":["0002-7863"],"eissn":["1520-5126"]},"year":"2026","_id":"22645","abstract":[{"text":"Nanocrystal superlattices are commonly formed by changing concentration, solvent conditions, or particle surface chemistry. Although effective, these approaches alter multiple contributions to the interparticle potential simultaneously, making it difficult to isolate the interactions responsible for ordering or to control assembly in chemically complex environments. Here, we show that oligomeric species present in a nanocrystal reaction medium drive superlattice formation through a depletion mechanism. Using PbTe nanocrystals as a model system, we identify Pb–oleate oligomers in the crude reaction mixture, characterize their solution structure, and quantify their contribution to the interparticle potential, establishing depletion as the dominant short-range interaction governing spontaneous body-centered cubic superlattice formation. We then confirm the depletion origin of ordering by showing that varying depletant concentration predictably shifts the order–disorder boundary and produces a thermally reversible transition between dispersed and ordered states ─ behavior that is inconsistent with van der Waals or ligand-mediated mechanisms but is a direct consequence of depletion control. Having established and validated the mechanism, we demonstrate that the same depletion framework can be deliberately activated in purified dispersions and transferred across nanocrystal systems of different composition and shape, including anisotropic and binary assemblies. These results establish precursor-derived depletion as a general and chemically grounded mechanism for nanocrystal superlattice formation, and show that collective ordering can be programmed through the surrounding medium rather than through particle surface modification.","lang":"eng"}],"page":"31245-31252","title":"Reaction medium asan architect of nanocrystal superlattices","author":[{"last_name":"Lee","full_name":"Lee, Seungho","orcid":"0000-0002-6962-8598","first_name":"Seungho","id":"BB243B88-D767-11E9-B658-BC13E6697425"},{"orcid":"0000-0001-7597-043X","id":"302BADF6-85FC-11EA-9E3B-B9493DDC885E","first_name":"Daniel","full_name":"Balazs, Daniel","last_name":"Balazs"},{"last_name":"Rayaroth Puthiyaveettil","full_name":"Rayaroth Puthiyaveettil, Aiswarya","id":"8aceb01b-8972-11ed-ae7b-d5fe53775add","first_name":"Aiswarya"},{"last_name":"Horta","full_name":"Horta, Sharona","id":"03a7e858-01b1-11ec-8b71-99ae6c4a05bc","first_name":"Sharona"},{"last_name":"Goodrich","full_name":"Goodrich, Carl Peter","id":"EB352CD2-F68A-11E9-89C5-A432E6697425","first_name":"Carl Peter","orcid":"0000-0002-1307-5074"},{"full_name":"Engel, Michael","last_name":"Engel","first_name":"Michael"},{"full_name":"Cherniukh, Ihor","last_name":"Cherniukh","id":"d03b62b2-5976-11ef-a8d7-9525504b7895","first_name":"Ihor"},{"last_name":"Ibáñez","full_name":"Ibáñez, Maria","first_name":"Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5013-2843"}],"publication":"Journal of the AmericanChemical Society"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"American Physical Society","date_created":"2026-08-04T05:58:23Z","acknowledgement":"The authors thank Vyacheslav Li for his earlier contributions to the development of the setup utilized in this work.\r\nThis work was supported by the Institute of Science and Technology Austria (ISTA); E.G. was supported by the European Research Council under Grant No. 101087907 (ERC CoG\r\nQuHAMP).","fulldoi":"https://doi.org/10.1103/71f2-sq4p","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"supplementarymaterial":"yes","citation":{"ieee":"E.-F. Gheorghita, S. Wald, A. Pupić, and O. Hosten, “Continuous accumulation of cold atoms in an optical cavity,” Physical Review A, vol. 114, no. 2. American Physical Society, 2026.","ama":"Gheorghita E-F, Wald S, Pupić A, Hosten O. Continuous accumulation of cold atoms in an optical cavity. Physical Review A. 2026;114(2). doi:10.1103/71f2-sq4p","mla":"Gheorghita, Edward-Fulbright, et al. “Continuous Accumulation of Cold Atoms in an Optical Cavity.” Physical Review A, vol. 114, no. 2, 023302, American Physical Society, 2026, doi:10.1103/71f2-sq4p.","apa":"Gheorghita, E.-F., Wald, S., Pupić, A., & Hosten, O. (2026). Continuous accumulation of cold atoms in an optical cavity. Physical Review A. American Physical Society. https://doi.org/10.1103/71f2-sq4p","ista":"Gheorghita E-F, Wald S, Pupić A, Hosten O. 2026. Continuous accumulation of cold atoms in an optical cavity. Physical Review A. 114(2), 023302.","short":"E.-F. Gheorghita, S. Wald, A. Pupić, O. Hosten, Physical Review A 114 (2026).","chicago":"Gheorghita, Edward-Fulbright, Sebastian Wald, Andrea Pupić, and Onur Hosten. “Continuous Accumulation of Cold Atoms in an Optical Cavity.” Physical Review A. American Physical Society, 2026. https://doi.org/10.1103/71f2-sq4p."},"researchdata_availability":"upon request","file_date_updated":"2026-08-04T06:03:14Z","das_tickbox":"1","article_number":"023302","oa":1,"issue":"2","article_type":"original","abstract":[{"lang":"eng","text":"Continuously operating atom-light interfaces represent a key prerequisite for steady-state quantum sensors and efficient quantum processors. Here, we demonstrate continuous accumulation of sub-Doppler-cooled atoms in a shallow intracavity dipole trap, realizing this regime. The key ingredient is a light-shift manipulation that creates spatially varying cooling parameters, enabling efficient capture and accumulation of atoms within a cavity mode. Demonstrated with rubidium atoms, a continuous flux from a source cell is funneled through the magneto-optical trap into the cavity mode, where the atoms are cooled and maintained below 10µK in steady state without time-sequenced operation. We characterize the resulting continuously maintained ensemble of millions of atoms and its collective coupling to the cavity field, establishing a route toward continuously operated cavity-QED systems and long-duration atomic and hybrid quantum sensors."}],"publication":"Physical Review A","title":"Continuous accumulation of cold atoms in an optical cavity","author":[{"last_name":"Gheorghita","full_name":"Gheorghita, Edward-Fulbright","first_name":"Edward-Fulbright","id":"e664a051-133f-11ed-8f02-a05999ad0822"},{"last_name":"Wald","full_name":"Wald, Sebastian","orcid":"0000-0002-5869-1604","id":"133F200A-B015-11E9-AD41-0EDAE5697425","first_name":"Sebastian"},{"full_name":"Pupić, Andrea","last_name":"Pupić","first_name":"Andrea","id":"ef9c50a4-5335-11ef-8b9b-8ce03e6380ed"},{"last_name":"Hosten","full_name":"Hosten, Onur","orcid":"0000-0002-2031-204X","first_name":"Onur","id":"4C02D85E-F248-11E8-B48F-1D18A9856A87"}],"publication_identifier":{"issn":["2469-9926"],"eissn":["2469-9934"]},"year":"2026","_id":"22642","publication_status":"published","article_processing_charge":"Yes (via OA deal)","PlanS_conform":"1","day":"03","date_updated":"2026-08-04T06:07:20Z","arxiv":1,"month":"08","dataavailabilitystatement":"There are no publicly available research data or software\r\nsupporting this manuscript. Requests for further information\r\nor data should be sent to the authors.","OA_type":"hybrid","ddc":["530"],"file":[{"content_type":"application/pdf","creator":"dernst","checksum":"fdecc394b734b56e1b3b151a816bbe14","date_updated":"2026-08-04T06:03:14Z","file_name":"2026_PhysicalReviewA_Gheorghita.pdf","access_level":"open_access","file_id":"22643","success":1,"date_created":"2026-08-04T06:03:14Z","file_size":959463,"relation":"main_file"}],"quality_controlled":"1","oa_version":"Published Version","intvolume":" 114","type":"journal_article","date_published":"2026-08-03T00:00:00Z","external_id":{"arxiv":["2512.14528"]},"volume":114,"language":[{"iso":"eng"}],"status":"public","has_accepted_license":"1","OA_place":"publisher","project":[{"_id":"bdb2a702-d553-11ed-ba76-f12e3e5a3bc6","grant_number":"101087907","name":"A quantum hybrid of atoms and milligram-scale pendulums: towards gravitational quantum mechanics"}],"department":[{"_id":"OnHo"},{"_id":"GradSch"}],"corr_author":"1","scopus_import":"1","doi":"10.1103/71f2-sq4p"},{"fulldoi":"https://doi.org/10.1111/nph.71454","acknowledgement":"The authors wish to acknowledge Dr. Paweł Baster for cloning PIN1-GFP-2/pDONR221, Ms. Aline Monzer and Dr. Mingyue Li for help with CHC protein level evaluation, Dr. Michał Rychłowski for help with confocal microscopy, Prof. Ari Pekka Mähönen for sharing the p1R4-pUBQ10:XVE plasmid, and Prof. Ying Gu for sharing seeds of the sec5 mutant. M.A. would like to thank Dr. Xixi Zhang and Prof. Sebastian Bednarek for inspiring discussions. This work was supported by the Taif University Researchers Supporting Project, TURSP-HC2022/02 to JF and SA and Austrian Science Fund (FWF): I 3630-B25 to JF. Open Access funding provided by Institute of Science and Technology Austria.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2026-08-04T06:48:41Z","publisher":"Wiley","article_type":"original","das_tickbox":"1","researchdata_availability":"yes","supplementarymaterial":"yes","citation":{"ista":"Adamowski M, Gackowski A, Matijevic I, Alotaibi SS, Friml J. 2026. The role of clathrin in post‐Golgi secretion in plant cells. New Phytologist., nph. 71454.","ama":"Adamowski M, Gackowski A, Matijevic I, Alotaibi SS, Friml J. The role of clathrin in post‐Golgi secretion in plant cells. New Phytologist. 2026. doi:10.1111/nph.71454","mla":"Adamowski, Maciek, et al. “The Role of Clathrin in Post‐Golgi Secretion in Plant Cells.” New Phytologist, nph. 71454, Wiley, 2026, doi:10.1111/nph.71454.","apa":"Adamowski, M., Gackowski, A., Matijevic, I., Alotaibi, S. S., & Friml, J. (2026). The role of clathrin in post‐Golgi secretion in plant cells. New Phytologist. Wiley. https://doi.org/10.1111/nph.71454","ieee":"M. Adamowski, A. Gackowski, I. Matijevic, S. S. Alotaibi, and J. Friml, “The role of clathrin in post‐Golgi secretion in plant cells,” New Phytologist. Wiley, 2026.","short":"M. Adamowski, A. Gackowski, I. Matijevic, S.S. Alotaibi, J. Friml, New Phytologist (2026).","chicago":"Adamowski, Maciek, Adam Gackowski, Ivana Matijevic, Saqer S. Alotaibi, and Jiří Friml. “The Role of Clathrin in Post‐Golgi Secretion in Plant Cells.” New Phytologist. Wiley, 2026. https://doi.org/10.1111/nph.71454."},"oa":1,"article_number":"nph.71454","publication_identifier":{"eissn":["1469-8137"],"issn":["0028-646X"]},"year":"2026","_id":"22647","abstract":[{"text":"Within the plant endomembrane system, the vesicle coat protein clathrin localizes to the plasma membrane (PM) and the trans-Golgi Network/early endosome (TGN/EE). While the role of clathrin in endocytosis at the PM is well established, its function at TGN/EE, presumably in late secretion (trafficking from the TGN/EE to the cell surface) or en route to the vacuole, is debated. Similarly debated are potential homeostatic mechanisms balancing the trafficking routes, especially endocytosis and late secretion.\r\nWe address these questions in Arabidopsis thaliana using conditional silencing of CLATHRIN HEAVY CHAIN (CHC), conditional overexpression of the clathrin uncoating factor AUXILIN-LIKE1, and secretory mutants.\r\nCHC silencing interferes with trafficking of cargoes destined for the apoplast and the PM, supporting a function of clathrin in late secretion. The secretory cargoes become abnormally rerouted from the TGN/EE to the vacuole. Unlike CHC silencing, overexpression of AUXILIN-LIKE1 selectively inhibits clathrin-mediated endocytosis while secretion continues normally at early points of induction. Conversely, secretory mutants exhibit a reduced PM recruitment of clathrin, and variably, of the TPLATE endocytic component.\r\nTogether, our data show a role of clathrin in secretion and suggest secretion as a fundamental trafficking process to which endocytosis is adjusted by a weak homeostatic mechanism.","lang":"eng"}],"author":[{"first_name":"Maciek","id":"45F536D2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6463-5257","last_name":"Adamowski","full_name":"Adamowski, Maciek"},{"first_name":"Adam","full_name":"Gackowski, Adam","last_name":"Gackowski"},{"id":"83c17ce3-15b2-11ec-abd3-f486545870bd","first_name":"Ivana","full_name":"Matijevic, Ivana","last_name":"Matijevic"},{"first_name":"Saqer S.","full_name":"Alotaibi, Saqer S.","last_name":"Alotaibi"},{"last_name":"Friml","full_name":"Friml, Jiří","orcid":"0000-0002-8302-7596","first_name":"Jiří","id":"4159519E-F248-11E8-B48F-1D18A9856A87"}],"publication":"New Phytologist","title":"The role of clathrin in post‐Golgi secretion in plant cells","date_updated":"2026-08-04T07:58:27Z","article_processing_charge":"Yes (via OA deal)","day":"20","publication_status":"epub_ahead","OA_type":"hybrid","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1111/nph.71454"}],"dataavailabilitystatement":"Original data associated with this study have been deposited in Dataset S1. The accession nos. of A. thaliana genes used in this study are as follows: CHC1 (AT3G11130), CHC2 (AT3G08530), CLC2 (AT2G40060), TPLATE (AT3G01780), AP2A1 (AT5G22770), DRP1C (AT1G14830), GNOM-LIKE1 (AT5G39500), BEN3/BIG2 (AT3G60860), TMK4 (AT3G23750), PIN1 (AT1G73590), AUXILIN-LIKE1 (AT4G12780), AP1M2 (AT1G60780), ECHIDNA (AT1G09330), SEC5A (AT1G76850), SEC5B (AT1G21170), TUB2 (AT5G62690), and PP2AA3 (AT1G13320).","month":"07","language":[{"iso":"eng"}],"external_id":{"pmid":["42477503"]},"oa_version":"Published Version","date_published":"2026-07-20T00:00:00Z","type":"journal_article","corr_author":"1","status":"public","department":[{"_id":"JiFr"},{"_id":"MaLo"},{"_id":"GradSch"}],"OA_place":"publisher","project":[{"_id":"26538374-B435-11E9-9278-68D0E5697425","name":"Molecular mechanisms of endocytic cargo recognition in plants","grant_number":"I03630","call_identifier":"FWF"}],"doi":"10.1111/nph.71454","scopus_import":"1","pmid":1},{"month":"07","file":[{"date_created":"2026-08-04T05:55:58Z","access_level":"open_access","file_id":"22641","success":1,"relation":"main_file","file_size":371840,"creator":"dernst","checksum":"1b90ff7da16b9604d6fe2c6281493456","content_type":"application/pdf","file_name":"2026_LettersMathPhysics_Desio.pdf","date_updated":"2026-08-04T05:55:58Z"}],"ddc":["510"],"OA_type":"hybrid","quality_controlled":"1","oa_version":"Published Version","type":"journal_article","date_published":"2026-07-17T00:00:00Z","intvolume":" 116","language":[{"iso":"eng"}],"external_id":{"arxiv":["2512.13443"]},"volume":116,"has_accepted_license":"1","status":"public","department":[{"_id":"RoSe"},{"_id":"GradSch"}],"OA_place":"publisher","corr_author":"1","scopus_import":"1","doi":"10.1007/s11005-026-02107-2","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2026-08-03T13:21:14Z","publisher":"Springer Nature","acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria).","fulldoi":"https://doi.org/10.1007/s11005-026-02107-2","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"file_date_updated":"2026-08-04T05:55:58Z","das_tickbox":"0","citation":{"chicago":"Desio, Davide, and Robert Seiringer. “Dyson Expansion for Form-Bounded Perturbations and Applications to the Polaron Problem.” Letters in Mathematical Physics. Springer Nature, 2026. https://doi.org/10.1007/s11005-026-02107-2.","short":"D. Desio, R. Seiringer, Letters in Mathematical Physics 116 (2026).","ama":"Desio D, Seiringer R. Dyson expansion for form-bounded perturbations and applications to the polaron problem. Letters in Mathematical Physics. 2026;116(4). doi:10.1007/s11005-026-02107-2","mla":"Desio, Davide, and Robert Seiringer. “Dyson Expansion for Form-Bounded Perturbations and Applications to the Polaron Problem.” Letters in Mathematical Physics, vol. 116, no. 4, 87, Springer Nature, 2026, doi:10.1007/s11005-026-02107-2.","apa":"Desio, D., & Seiringer, R. (2026). Dyson expansion for form-bounded perturbations and applications to the polaron problem. Letters in Mathematical Physics. Springer Nature. https://doi.org/10.1007/s11005-026-02107-2","ista":"Desio D, Seiringer R. 2026. Dyson expansion for form-bounded perturbations and applications to the polaron problem. Letters in Mathematical Physics. 116(4), 87.","ieee":"D. Desio and R. Seiringer, “Dyson expansion for form-bounded perturbations and applications to the polaron problem,” Letters in Mathematical Physics, vol. 116, no. 4. Springer Nature, 2026."},"supplementarymaterial":"no","researchdata_availability":"no","oa":1,"article_number":"87","article_type":"original","issue":"4","abstract":[{"lang":"eng","text":"We present an abstract Dyson expansion for perturbations that are merely relatively form-bounded, and apply it to the polaron problem. For a large class of polaron-type models, including the Fröhlich and Nelson models, we prove that the vacuum expectation value of the heat semi-group is a completely monotone function of the square of the total momentum. Consequently, the ground-state energy is a concave function of the square of the momentum, a result recently proved for the Fröhlich model in [14] using a probabilistic approach via Wiener integrals."}],"publication":"Letters in Mathematical Physics","author":[{"full_name":"Desio, Davide","last_name":"Desio","orcid":"0000-0001-9840-3809","first_name":"Davide","id":"ea10a57b-23f6-11ef-9085-80d8596d52ef"},{"last_name":"Seiringer","full_name":"Seiringer, Robert","first_name":"Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6781-0521"}],"title":"Dyson expansion for form-bounded perturbations and applications to the polaron problem","publication_identifier":{"issn":["1573-0530"]},"_id":"22639","year":"2026","article_processing_charge":"Yes (via OA deal)","PlanS_conform":"1","day":"17","publication_status":"published","date_updated":"2026-08-04T05:57:21Z","arxiv":1},{"doi":"10.1017/s0017089526101074","scopus_import":"1","corr_author":"1","department":[{"_id":"TiBr"},{"_id":"GradSch"}],"OA_place":"publisher","status":"public","has_accepted_license":"1","language":[{"iso":"eng"}],"external_id":{"arxiv":["2506.18065"]},"date_published":"2026-07-21T00:00:00Z","type":"journal_article","oa_version":"Published Version","quality_controlled":"1","main_file_link":[{"url":"https://doi.org/10.1017/S0017089526101074","open_access":"1"}],"OA_type":"hybrid","ddc":["500"],"month":"07","mathsc":["11N32","11N37","11D57","11G35"],"arxiv":1,"date_updated":"2026-08-04T06:28:01Z","day":"21","PlanS_conform":"1","article_processing_charge":"Yes (via OA deal)","publication_status":"epub_ahead","_id":"22644","year":"2026","publication_identifier":{"eissn":["1469-509X"],"issn":["0017-0895"]},"author":[{"orcid":"0000-0002-4989-5330","id":"7b7eb4ca-eb2c-11ec-b98b-accec0b20c3b","first_name":"Yijie","full_name":"Diao, Yijie","last_name":"Diao"}],"publication":"Glasgow Mathematical Journal","title":"Liouville function, von Mangoldt function, and norm forms at random binary forms","page":"1-34","abstract":[{"text":"We analyze the average behavior of various arithmetic functions at the values of degree 𝑑 binary forms ordered by height, with probability 1. This approach yields averaged versions of the Chowla conjecture and the Bateman–Horn conjecture for random binary forms. Furthermore, we show that the rational Hasse principle holds for almost all Châtelet varieties defined by a fixed norm form of degree 𝑒 and by varying binary forms of fixed degree 𝑑, provided 𝑒 divides 𝑑. This proves an average version of a conjecture of Colliot-Thélène.","lang":"eng"}],"article_type":"original","oa":1,"das_tickbox":"0","supplementarymaterial":"no","researchdata_availability":"no","citation":{"short":"Y. Diao, Glasgow Mathematical Journal (2026) 1–34.","chicago":"Diao, Yijie. “Liouville Function, von Mangoldt Function, and Norm Forms at Random Binary Forms.” Glasgow Mathematical Journal. Cambridge University Press, 2026. https://doi.org/10.1017/s0017089526101074.","ieee":"Y. Diao, “Liouville function, von Mangoldt function, and norm forms at random binary forms,” Glasgow Mathematical Journal. Cambridge University Press, pp. 1–34, 2026.","ista":"Diao Y. 2026. Liouville function, von Mangoldt function, and norm forms at random binary forms. Glasgow Mathematical Journal., 1–34.","mla":"Diao, Yijie. “Liouville Function, von Mangoldt Function, and Norm Forms at Random Binary Forms.” Glasgow Mathematical Journal, Cambridge University Press, 2026, pp. 1–34, doi:10.1017/s0017089526101074.","apa":"Diao, Y. (2026). Liouville function, von Mangoldt function, and norm forms at random binary forms. Glasgow Mathematical Journal. Cambridge University Press. https://doi.org/10.1017/s0017089526101074","ama":"Diao Y. Liouville function, von Mangoldt function, and norm forms at random binary forms. Glasgow Mathematical Journal. 2026:1-34. doi:10.1017/s0017089526101074"},"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"acknowledgement":"I am deeply grateful to my advisor Tim Browning for suggesting this problem and for the many valuable discussions that shaped this work. I would also like to thank Efthymios Sofos, Matteo Verzobio, and Shuntaro Yamagishi for discussions and insights that contributed to this paper. I am also very grateful to the anonymous referee for their careful reading and for the considerable effort they put into improving the manuscript.","fulldoi":"https://doi.org/10.1017/s0017089526101074","date_created":"2026-08-04T06:15:04Z","publisher":"Cambridge University Press","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"issue":"4","article_type":"original","researchdata_availability":"no","citation":{"short":"A. Kalinov, M. Ly, C. Hafner, C. Wojtan, ACM Transactions on Graphics 45 (2026).","chicago":"Kalinov, Aleksei, Mickaël Ly, Christian Hafner, and Chris Wojtan. “Physics-Inspired Procedural Texturing of Extremely Deformable Surfaces.” ACM Transactions on Graphics. Association for Computing Machinery, 2026. https://doi.org/10.1145/3811353.","ista":"Kalinov A, Ly M, Hafner C, Wojtan C. 2026. Physics-inspired procedural texturing of extremely deformable surfaces. ACM Transactions on Graphics. 45(4), 154.","ama":"Kalinov A, Ly M, Hafner C, Wojtan C. Physics-inspired procedural texturing of extremely deformable surfaces. ACM Transactions on Graphics. 2026;45(4). doi:10.1145/3811353","apa":"Kalinov, A., Ly, M., Hafner, C., & Wojtan, C. (2026). Physics-inspired procedural texturing of extremely deformable surfaces. ACM Transactions on Graphics. Los Angeles, CA, United States: Association for Computing Machinery. https://doi.org/10.1145/3811353","mla":"Kalinov, Aleksei, et al. “Physics-Inspired Procedural Texturing of Extremely Deformable Surfaces.” ACM Transactions on Graphics, vol. 45, no. 4, 154, Association for Computing Machinery, 2026, doi:10.1145/3811353.","ieee":"A. Kalinov, M. Ly, C. Hafner, and C. Wojtan, “Physics-inspired procedural texturing of extremely deformable surfaces,” ACM Transactions on Graphics, vol. 45, no. 4. Association for Computing Machinery, 2026."},"supplementarymaterial":"yes","file_date_updated":"2026-05-29T13:19:37Z","das_tickbox":"0","article_number":"154","oa":1,"fulldoi":"https://doi.org/10.1145/3811353","acknowledgement":"We thank the anonymous reviewers for their helpful comments, the members of the Visual Computing Group at ISTA for their feedback. We also thank Jonathan Gagnon for their help with running the Lapped Textures codes and SideFX for the Houdini Education software licenses.\r\nImages in Fig. 2 by Kisoulou and Vultured on Unsplash, Michal Jarmoluk and Public Domain Pictures from Pixabay and Hawai‘i Volcanoes NPS on flickr. This research was supported by the Scientific Service Units (SSU) of ISTA through resources provided by Scientific Computing and was funded in part by the European Union (ERC-2021-COG 101045083 CoDiNA).","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","publisher":"Association for Computing Machinery","date_created":"2026-05-29T13:25:16Z","date_updated":"2026-08-04T09:07:44Z","publication_status":"published","day":"01","article_processing_charge":"Yes","publication_identifier":{"issn":["0730-0301"]},"_id":"21923","conference":{"start_date":"2026-07-19","end_date":"2026-07-23","location":"Los Angeles, CA, United States","name":"SIGGRAPH: International Conference and Exhibition on Computer Graphics and Interactive Techniques"},"year":"2026","abstract":[{"text":"The appearance of simulated natural phenomena heavily depends on the way surfaces are textured. However, applying texture maps to dynamic deformable surfaces presents a significant challenge, due to ever-shifting differences in length scales involved. When these surfaces move and advect the texture along with them, their final appearance degrades as deformed regions dramatically distort their texture map. Modifications to the texture directly at the pixel level in response to the deformation may introduce ghosting artifacts and look unnatural. In the real world, the appearance of surface details on a deforming material changes through the interplay of physical processes such as rupturing, exposure of internal structure, or wrinkling. Motivated by these behaviors, in this work we explore how physical principles can guide the texturing methods based on the measure of surface deformation.\r\nWe present two novel wave-based procedural texturing algorithms which reproduce common physical properties like advection and self-similarity, enabling the plausible animation of deforming objects with extreme texture map distortions. Our algorithms are fully procedural, require no actual physics simulation, and store no state or history of deformation besides the input UV map, making them highly parallelizable on the GPU and efficient enough for real-time applications. We show the versatility of the method by animating physical phenomena with extreme deformations such as flowing lava, stretching putty and outpouring sludge.","lang":"eng"}],"publication":"ACM Transactions on Graphics","title":"Physics-inspired procedural texturing of extremely deformable surfaces","author":[{"orcid":"0000-0003-2189-3904","first_name":"Aleksei","id":"44b7120e-eb97-11eb-a6c2-e1557aa81d02","last_name":"Kalinov","full_name":"Kalinov, Aleksei"},{"id":"6340d7f0-b48d-11eb-b10d-b7487e71d9f1","first_name":"Mickaël","last_name":"Ly","full_name":"Ly, Mickaël"},{"last_name":"Hafner","full_name":"Hafner, Christian","first_name":"Christian","id":"400429CC-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Wojtan, Christopher J","last_name":"Wojtan","orcid":"0000-0001-6646-5546","first_name":"Christopher J","id":"3C61F1D2-F248-11E8-B48F-1D18A9856A87"}],"volume":45,"keyword":["Procedural animation"],"language":[{"iso":"eng"}],"oa_version":"Published Version","intvolume":" 45","acknowledged_ssus":[{"_id":"ScienComp"}],"type":"journal_article","date_published":"2026-07-01T00:00:00Z","OA_type":"gold","ddc":["006"],"file":[{"checksum":"ea165bf731ddd3045f83878dcb833672","creator":"akalinov","content_type":"video/mp4","file_name":"tog454-article154-supplemental.mp4","date_updated":"2026-05-29T13:19:33Z","date_created":"2026-05-29T13:19:33Z","success":1,"file_id":"21924","access_level":"open_access","relation":"main_file","file_size":77337231},{"relation":"main_file","file_size":226633977,"date_created":"2026-05-29T13:19:37Z","success":1,"file_id":"21925","access_level":"open_access","file_name":"tog454-article154-video.mp4","date_updated":"2026-05-29T13:19:37Z","checksum":"6274cfb15ea5ba7324b74afc7b0d9629","creator":"akalinov","content_type":"video/mp4"},{"access_level":"open_access","success":1,"file_id":"21926","date_created":"2026-05-29T13:19:33Z","file_size":6793867,"relation":"main_file","content_type":"application/pdf","creator":"akalinov","checksum":"9d41b322a7876be9a3311017b9973183","date_updated":"2026-05-29T13:19:33Z","file_name":"tog454-article154-supplemental.pdf"},{"success":1,"file_id":"21927","access_level":"open_access","date_created":"2026-05-29T13:19:36Z","file_size":84173392,"relation":"main_file","content_type":"application/pdf","checksum":"51bc60d2de867fbfa570652dec7993b4","creator":"akalinov","date_updated":"2026-05-29T13:19:36Z","file_name":"tog454-article154-main-1.pdf"}],"quality_controlled":"1","month":"07","doi":"10.1145/3811353","related_material":{"link":[{"url":"https://ista.ac.at/en/news/infinite-deformation-and-shape-computation/","relation":"press_release","description":"News on ISTA website"}]},"scopus_import":"1","corr_author":"1","status":"public","has_accepted_license":"1","project":[{"grant_number":"101045083","name":"Computational Discovery of Numerical Algorithms for Animation and Simulation of Natural Phenomena","_id":"34bc2376-11ca-11ed-8bc3-9a3b3961a088"}],"OA_place":"publisher","department":[{"_id":"GradSch"},{"_id":"ChWo"}]},{"publication_status":"epub_ahead","article_processing_charge":"Yes (via OA deal)","PlanS_conform":"1","day":"17","date_updated":"2026-08-04T09:29:55Z","author":[{"id":"29A8453C-F248-11E8-B48F-1D18A9856A87","first_name":"Lena A","last_name":"Schwarz","full_name":"Schwarz, Lena A"},{"last_name":"Dotter","full_name":"Dotter, Christoph","first_name":"Christoph","id":"4C66542E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9033-9096"},{"first_name":"Sergey","last_name":"Isaev","full_name":"Isaev, Sergey"},{"full_name":"Lisi, Michela","last_name":"Lisi","first_name":"Michela","id":"39383c1b-d3eb-11ef-8d6c-c8cdf4e10c8c"},{"full_name":"Malzl, Daniel","last_name":"Malzl","first_name":"Daniel"},{"full_name":"Büschl, Christoph","last_name":"Büschl","id":"2a8c054c-0913-11ee-9159-f8ef515809ed","first_name":"Christoph"},{"full_name":"Ladstätter, Sabrina","last_name":"Ladstätter","first_name":"Sabrina"},{"first_name":"Bárbara","id":"3B03AA1A-F248-11E8-B48F-1D18A9856A87","last_name":"Oliveira","full_name":"Oliveira, Bárbara"},{"first_name":"Matteo","id":"8959927b-2236-11ed-bd6e-ea83d94ade0e","full_name":"Barel, Matteo","last_name":"Barel"},{"last_name":"Basilico","full_name":"Basilico, Bernadette","first_name":"Bernadette","id":"36035796-5ACA-11E9-A75E-7AF2E5697425","orcid":"0000-0003-1843-3173"},{"full_name":"Chintaluri, Chaitanya","last_name":"Chintaluri","first_name":"Chaitanya","id":"BA06AFEE-A4BA-11EA-AE5C-14673DDC885E","orcid":"0000-0003-4252-1608"},{"last_name":"Gorkiewicz","full_name":"Gorkiewicz, Sarah","id":"f141a35d-15a9-11ec-9fb2-fef6becc7b6f","first_name":"Sarah"},{"id":"3384113A-F248-11E8-B48F-1D18A9856A87","first_name":"Mohammad","full_name":"Goudarzi, Mohammad","last_name":"Goudarzi"},{"last_name":"Belinova","full_name":"Belinova, Tereza","id":"0bf89b6a-d28b-11eb-8bd6-f43768e4d368","first_name":"Tereza"},{"last_name":"Reichl","full_name":"Reichl, Stephan","first_name":"Stephan"},{"full_name":"Sendžikaitė, Gintarė","last_name":"Sendžikaitė","first_name":"Gintarė","id":"dd6d52f2-c50d-11eb-9548-bcf0ff82b344"},{"first_name":"Satish","id":"b0bbee33-09f7-11eb-909c-8b358058d28a","orcid":"0000-0002-2479-2669","last_name":"Arcot Jayaram","full_name":"Arcot Jayaram, Satish"},{"id":"3B8B25A8-F248-11E8-B48F-1D18A9856A87","first_name":"Peter","orcid":"0000-0002-3509-1948","last_name":"Koppensteiner","full_name":"Koppensteiner, Peter"},{"full_name":"Sommer, Christoph M","last_name":"Sommer","first_name":"Christoph M","id":"4DF26D8C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-1216-9105"},{"full_name":"Vogels, Tim P","last_name":"Vogels","orcid":"0000-0003-3295-6181","id":"CB6FF8D2-008F-11EA-8E08-2637E6697425","first_name":"Tim P"},{"full_name":"Menche, Jörg","last_name":"Menche","first_name":"Jörg"},{"first_name":"Igor","last_name":"Adameyko","full_name":"Adameyko, Igor"},{"first_name":"Peter Vasili","id":"0095641e-7eb7-11f1-8665-aec51a2ab5e0","last_name":"Kharchenko","full_name":"Kharchenko, Peter Vasili"},{"first_name":"Christoph","last_name":"Bock","full_name":"Bock, Christoph"},{"id":"3E57A680-F248-11E8-B48F-1D18A9856A87","first_name":"Gaia","orcid":"0000-0002-7673-7178","full_name":"Novarino, Gaia","last_name":"Novarino"}],"publication":"Nature","title":"Cortical development dynamics across autism spectrum disorder mouse models","abstract":[{"text":"Despite the functional diversity of over 100 causal genes1,2,3, phenotypic convergence across models may reveal common neurobiological processes in autism spectrum disorder (ASD). Here we profiled 251 samples from 11 monogenic mouse models of ASD using single-nucleus multi-omic sequencing across three developmental stages, both sexes and two brain regions. Despite genetic heterogeneity, ASD-linked mutations converged on perturbations of the radial glial cell lineage. These alterations reflect a transient developmental delay rather than lasting lineage misspecification and resolve by postnatal stages. Molecularly, the largest transcriptional differences emerged in neurons at early postnatal stages. These changes included downregulation of synaptic and ion channel-related genes, consistent with homeostatic adaptation or delayed maturation. Network analysis showed molecular convergence across models within each developmental stage, suggesting that diverse mutations linked to ASD impinge on common, stage-specific processes. Convergence becomes less pronounced by postnatal day 14, highlighting the dynamic nature of ASD-associated changes. Cross-genotype heterogeneity is superimposed on stage-specific effects. Electrophysiology corroborated this pattern: mutants generally showed altered neuronal excitability and synaptic properties with model-specific nuances. Our study also highlighted sex-specific gene expression alterations, with female mice often displaying larger effect sizes than male mice. Together, our findings provide a comprehensive view of developmental cellular and molecular dynamics across models of ASD.","lang":"eng"}],"year":"2026","_id":"22295","publication_identifier":{"issn":["0028-0836"],"eissn":["1476-4687"]},"oa":1,"supplementarymaterial":"yes","citation":{"short":"L.A. Schwarz, C. Dotter, S. Isaev, M. Lisi, D. Malzl, C. Büschl, S. Ladstätter, B. Oliveira, M. Barel, B. Basilico, C. Chintaluri, S. Gorkiewicz, M. Goudarzi, T. Belinova, S. Reichl, G. Sendžikaitė, S. Arcot Jayaram, P. Koppensteiner, C.M. Sommer, T.P. Vogels, J. Menche, I. Adameyko, P.V. Kharchenko, C. Bock, G. Novarino, Nature (2026).","chicago":"Schwarz, Lena A, Christoph Dotter, Sergey Isaev, Michela Lisi, Daniel Malzl, Christoph Büschl, Sabrina Ladstätter, et al. “Cortical Development Dynamics across Autism Spectrum Disorder Mouse Models.” Nature. Springer Nature, 2026. https://doi.org/10.1038/s41586-026-10679-1.","ieee":"L. A. Schwarz et al., “Cortical development dynamics across autism spectrum disorder mouse models,” Nature. Springer Nature, 2026.","ista":"Schwarz LA, Dotter C, Isaev S, Lisi M, Malzl D, Büschl C, Ladstätter S, Oliveira B, Barel M, Basilico B, Chintaluri C, Gorkiewicz S, Goudarzi M, Belinova T, Reichl S, Sendžikaitė G, Arcot Jayaram S, Koppensteiner P, Sommer CM, Vogels TP, Menche J, Adameyko I, Kharchenko PV, Bock C, Novarino G. 2026. Cortical development dynamics across autism spectrum disorder mouse models. Nature.","apa":"Schwarz, L. A., Dotter, C., Isaev, S., Lisi, M., Malzl, D., Büschl, C., … Novarino, G. (2026). Cortical development dynamics across autism spectrum disorder mouse models. Nature. Springer Nature. https://doi.org/10.1038/s41586-026-10679-1","mla":"Schwarz, Lena A., et al. “Cortical Development Dynamics across Autism Spectrum Disorder Mouse Models.” Nature, Springer Nature, 2026, doi:10.1038/s41586-026-10679-1.","ama":"Schwarz LA, Dotter C, Isaev S, et al. Cortical development dynamics across autism spectrum disorder mouse models. Nature. 2026. doi:10.1038/s41586-026-10679-1"},"researchdata_availability":"yes","article_type":"original","publisher":"Springer Nature","date_created":"2026-07-13T09:47:21Z","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"acknowledgement":"We thank F. Freeman, V. Voronin and M. Ladron de Guevara for technical assistance; A. Stichelberger and S. Liegenfeld for the management of our animal colony; M. Schunn, C. Gold and the Preclinical Facility team for technical assistance; C. Jansen and the Scientific Computing Facility for bioinformatics support and technical assistance; the Biomedical Sequencing Facility at CeMM for assistance with next-generation sequencing; and J. Lin and T. Krausgruber in the laboratory of C. Bock for support with flow cytometry; J. Kirchner for illustrating the multi-omics approach depicted in Fig. 1; and all members of the laboratory of G.N. for their support and discussions. This study was supported by the Scientific Service Units of ISTA through resources provided by the Imaging & Optics Facility and the Laboratory Support Facility. Bulk RNA-seq was performed by the Next Generation Sequencing Facility at Vienna BioCenter Core Facilities, member of the Vienna BioCenter. This work was supported by a European Research Council Consolidator Grant (PR1028ERC02), by SFARI (PR1028SIM02) and by the Austrian Science Fund (PE1028W1232 and PR1028FG1803) to G.N. Open access funding provided by Institute of Science and Technology (IST Austria).","fulldoi":"https://doi.org/10.1038/s41586-026-10679-1","pmid":1,"scopus_import":"1","doi":"10.1038/s41586-026-10679-1","related_material":{"link":[{"description":"News on ISTA website","url":"https://ista.ac.at/en/news/patterns-in-genetic-chaos/","relation":"press_release"}]},"project":[{"_id":"34ba8964-11ca-11ed-8bc3-e15864e7e9a6","name":"Toward an understanding of the brain interstitial system and the extracellular proteome in health and autism spectrum disorders","grant_number":"101044865"},{"name":"Critical windows and reversibility of ASD associated with mutations in chromatin remodelers","_id":"9B91375C-BA93-11EA-9121-9846C619BF3A","grant_number":"707964"},{"call_identifier":"FWF","name":"Molecular Drug Targets","grant_number":"W1232","_id":"2548AE96-B435-11E9-9278-68D0E5697425"},{"name":"Neurobiology of anxiety in autism spectrum disorders","_id":"ebb38b5d-77a9-11ec-83b8-a42e08120a88","grant_number":"FG1803 49015"}],"OA_place":"publisher","department":[{"_id":"AnKi"},{"_id":"GaNo"},{"_id":"TiVo"},{"_id":"ScienComp"},{"_id":"GradSch"},{"_id":"Bio"},{"_id":"PreCl"}],"has_accepted_license":"1","status":"public","corr_author":"1","acknowledged_ssus":[{"_id":"Bio"},{"_id":"LifeSc"}],"type":"journal_article","date_published":"2026-06-17T00:00:00Z","oa_version":"Published Version","external_id":{"pmid":["42310454"]},"language":[{"iso":"eng"}],"month":"06","dataavailabilitystatement":"Single-nucleus multiomics data are available from the Gene Expression Omnibus (GSE328363). The mm10 reference genome was used for the alignment (refdata-cellranger-arc-mm10-2020-A-2.0.0, obtained from https://cf.10xgenomics.com/supp/cell-arc/refdata-cellranger-arc-mm10-2020-A-2.0.0.tar.gz). Single-cell data can be accessed and visualized through a CELLxGENE database (https://adameykolab.hifo.meduniwien.ac.at/cellxgene_public/filecrawl/.2026_Nature_Schwarz). Source data are provided with this paper. Scripts and analyses that support the main findings of this study are accessible in a GitHub repository (https://git.ista.ac.at/research-sofware/mouseome).","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1038/s41586-026-10679-1"}],"ddc":["570"],"OA_type":"hybrid"},{"article_processing_charge":"Yes (via OA deal)","PlanS_conform":"1","day":"29","publication_status":"epub_ahead","date_updated":"2026-08-04T09:25:18Z","author":[{"full_name":"Maddipatla, Sai A","last_name":"Maddipatla","id":"e957f5e5-91c9-11f0-a95f-e090f66ecb4d","first_name":"Sai A"},{"id":"ef280fe0-91c9-11f0-a95f-8dea3f5bc513","first_name":"Nadav E","full_name":"Sellam, Nadav E","last_name":"Sellam"},{"id":"11d88cf5-91ca-11f0-a95f-edf9f08f47b7","first_name":"Meital I","last_name":"Bojan","full_name":"Bojan, Meital I"},{"id":"ff7958eb-91c9-11f0-a95f-f3bf65828cf6","first_name":"Vova","full_name":"Masalitin, Vova","last_name":"Masalitin"},{"full_name":"Vedula, Sanketh","last_name":"Vedula","first_name":"Sanketh"},{"last_name":"Schanda","full_name":"Schanda, Paul","first_name":"Paul","id":"7B541462-FAF6-11E9-A490-E8DFE5697425","orcid":"0000-0002-9350-7606"},{"last_name":"Marx","full_name":"Marx, Ailie","first_name":"Ailie"},{"id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6","first_name":"Alexander","orcid":"0000-0001-9699-8730","last_name":"Bronstein","full_name":"Bronstein, Alexander"}],"publication":"Nature Biotechnology","title":"Experiment-guided AlphaFold3 resolves measurement-consistent protein ensembles","abstract":[{"lang":"eng","text":"AlphaFold3 predicts highly accurate protein structures from sequence but tends to collapse to a single dominant conformation, even when the underlying structure is inherently heterogeneous. Moreover, its predictions are oblivious to experimental conditions that can alter local sequence conformation. In this work, we show that AlphaFold3 can be guided to match data obtained by nuclear magnetic resonance (NMR) spectroscopy, X-ray crystallography and cryogenic electron microscopy (cryo-EM) experiments and combinations thereof. Our approach can also incorporate data that explicitly report on dynamics, such as site-resolved order parameters. We demonstrate that this methodology generates compact structural ensembles whose ensemble-averaged observables agree with experiment, with fewer distance restraint violations than traditionally resolved NMR structures and with unmodeled alternate conformations uncovered in electron density. This methodology paves the way for experimentally aware predictive models that generate structural ensembles consistent with the measurements, potentially over multiple modalities, and that can be further refined toward thermodynamically grounded ensembles by incorporating energetics."}],"year":"2026","_id":"22268","publication_identifier":{"issn":["1087-0156"],"eissn":["1546-1696"]},"oa":1,"das_tickbox":"1","supplementarymaterial":"yes","researchdata_availability":"yes","citation":{"short":"S.A. Maddipatla, N.E. Sellam, M.I. Bojan, V. Masalitin, S. Vedula, P. Schanda, A. Marx, A.M. Bronstein, Nature Biotechnology (2026).","chicago":"Maddipatla, Sai A, Nadav E Sellam, Meital I Bojan, Vova Masalitin, Sanketh Vedula, Paul Schanda, Ailie Marx, and Alex M. Bronstein. “Experiment-Guided AlphaFold3 Resolves Measurement-Consistent Protein Ensembles.” Nature Biotechnology. Springer Nature, 2026. https://doi.org/10.1038/s41587-026-03166-5.","ieee":"S. A. Maddipatla et al., “Experiment-guided AlphaFold3 resolves measurement-consistent protein ensembles,” Nature Biotechnology. Springer Nature, 2026.","ista":"Maddipatla SA, Sellam NE, Bojan MI, Masalitin V, Vedula S, Schanda P, Marx A, Bronstein AM. 2026. Experiment-guided AlphaFold3 resolves measurement-consistent protein ensembles. Nature Biotechnology.","mla":"Maddipatla, Sai A., et al. “Experiment-Guided AlphaFold3 Resolves Measurement-Consistent Protein Ensembles.” Nature Biotechnology, Springer Nature, 2026, doi:10.1038/s41587-026-03166-5.","ama":"Maddipatla SA, Sellam NE, Bojan MI, et al. Experiment-guided AlphaFold3 resolves measurement-consistent protein ensembles. Nature Biotechnology. 2026. doi:10.1038/s41587-026-03166-5","apa":"Maddipatla, S. A., Sellam, N. E., Bojan, M. I., Masalitin, V., Vedula, S., Schanda, P., … Bronstein, A. M. (2026). Experiment-guided AlphaFold3 resolves measurement-consistent protein ensembles. Nature Biotechnology. Springer Nature. https://doi.org/10.1038/s41587-026-03166-5"},"article_type":"original","date_created":"2026-07-12T22:02:19Z","publisher":"Springer Nature","user_id":"ba8df636-2132-11f1-aed0-ed93e2281fdd","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"acknowledgement":"A. Marx acknowledges the financial support of the Helmsley Fellowships Program for Sustainability and Health. A.M.B. and P.S. are supported by the Institute of Science and Technology Austria Internal Project Call grant Generative Protein NMR. S.V. was supported in part by funding from the Eric and Wendy Schmidt Center at the Broad Institute of MIT and Harvard. Open access funding provided by Institute of Science and Technology (IST Austria).","fulldoi":"https://doi.org/10.1038/s41587-026-03166-5","pmid":1,"scopus_import":"1","related_material":{"link":[{"url":"https://ista.ac.at/en/news/toward-experiment-guided-alphafold/","relation":"press_release","description":"News on ISTA website"}]},"doi":"10.1038/s41587-026-03166-5","department":[{"_id":"PaSc"},{"_id":"AlBr"},{"_id":"GradSch"}],"OA_place":"publisher","has_accepted_license":"1","status":"public","corr_author":"1","type":"journal_article","date_published":"2026-06-29T00:00:00Z","oa_version":"Published Version","language":[{"iso":"eng"}],"external_id":{"pmid":["42374114"]},"dataavailabilitystatement":"All structures and metrics reported in this paper are openly available on Harvard Dataverse - https://doi.org/10.7910/DVN/PLYUHN. All code is openly available on GitHub (https://github.com/sai-advaith/guided_alphafold); the version used for this paper (version 0.9.1) is permanently archived on Zenodo https://doi.org/10.5281/zenodo.17307005","month":"06","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1038/s41587-026-03166-5"}],"OA_type":"hybrid","ddc":["570"]},{"das_tickbox":"1","file_date_updated":"2026-07-16T09:17:08Z","citation":{"ista":"Becker LM. 2026. Exploring protein dynamics using specific labeling approaches for solid-state MAS NMR. Institute of Science and Technology Austria.","ama":"Becker LM. Exploring protein dynamics using specific labeling approaches for solid-state MAS NMR. 2026. doi:10.15479/AT-ISTA-22334","apa":"Becker, L. M. (2026). Exploring protein dynamics using specific labeling approaches for solid-state MAS NMR. Institute of Science and Technology Austria. https://doi.org/10.15479/AT-ISTA-22334","mla":"Becker, Lea Marie. Exploring Protein Dynamics Using Specific Labeling Approaches for Solid-State MAS NMR. Institute of Science and Technology Austria, 2026, doi:10.15479/AT-ISTA-22334.","ieee":"L. M. Becker, “Exploring protein dynamics using specific labeling approaches for solid-state MAS NMR,” Institute of Science and Technology Austria, 2026.","short":"L.M. Becker, Exploring Protein Dynamics Using Specific Labeling Approaches for Solid-State MAS NMR, Institute of Science and Technology Austria, 2026.","chicago":"Becker, Lea Marie. “Exploring Protein Dynamics Using Specific Labeling Approaches for Solid-State MAS NMR.” Institute of Science and Technology Austria, 2026. https://doi.org/10.15479/AT-ISTA-22334."},"oa":1,"license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","date_created":"2026-07-14T08:08:51Z","publisher":"Institute of Science and Technology Austria","acknowledgement":"During the work on this thesis, I was the recipient of a DOC Fellowship of the Austrian\r\nAcademy of Sciences at the Institute of Science and Technology Austria (grant no. PR10660EAW01).","fulldoi":"https://doi.org/10.15479/AT-ISTA-22334","tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png","short":"CC BY-NC-ND (4.0)"},"day":"13","article_processing_charge":"No","publication_status":"published","date_updated":"2026-08-04T09:32:45Z","supervisor":[{"last_name":"Schanda","full_name":"Schanda, Paul","orcid":"0000-0002-9350-7606","id":"7B541462-FAF6-11E9-A490-E8DFE5697425","first_name":"Paul"}],"page":"205","abstract":[{"lang":"eng","text":"Characterizing protein dynamics at the atomic level is essential for our understanding of biological mechanisms. Whether it is to facilitate metabolite transport, catalyze reactions, transmit signals, or regulate metabolism – proteins are constantly in motion and sample multiple conformational states to fulfill their function. Nuclear magnetic resonance (NMR) spectroscopy is particularly well suited to elucidate the dynamics of biomolecules on their complex free-energy landscape. In particular, solid-state magic-angle spinning (MAS) NMR enables the study of large molecular assemblies, protein crystals, or insoluble proteins at atomic resolution without an inherent molecular size limitation. MAS NMR experiments to probe protein dynamics are extremely versatile and sensitive to motional timescales from picoseconds to seconds. Over the past decades, technological advances, developments in experimental design, and new isotope-labeling approaches have further expanded the possibilities of this technique and significantly improved the accuracy of the determined motional parameters.\r\nFunctionally important sites of proteins often contain aromatic residues. Their side-chain motions have therefore long served as valuable indicators of mechanistically relevant dynamics in NMR studies. In this thesis, site-specifically labeled aromatic residues act as sensitive reporters for MAS NMR studies of protein dynamics. The first part addresses how different environments impact side-chain motion by probing ring flips of phenylalanines and tyrosines in crystalline proteins and amyloid fibrils. It provides important insights for the analysis of dynamics obtained in non-native protein environments and emphasizes the complex factors that determine the timescale of internal dynamics. In the second part, the focus shifts towards methodological questions regarding the investigation of protein dynamics by 19F MAS NMR. The fluorine nucleus exhibits promising characteristics for NMR studies but also presents significant challenges, which is why the full methodological potential of 19F MAS NMR has not been fully realized yet. This work demonstrates that paramagnetic doping can considerably reduce the measurement time and improve the sensitivity of fluorinated samples. Finally, 19F MAS NMR is evaluated as a tool for studying protein side-chain dynamics on the example of tryptophans. The results illustrate the challenges in analyzing such experiments and lay the foundation for further development of 19F MAS NMR relaxation studies.\r\nTaken together, this thesis highlights the potential of combining specific isotope labeling, MAS NMR, and complementary methods such as crystallography and computational simulations to elucidate internal protein dynamics. The further development of such integrative approaches will be crucial to improving our understanding of complex mechanisms and protein function.\r\n"}],"author":[{"full_name":"Becker, Lea Marie","last_name":"Becker","first_name":"Lea Marie","id":"36336939-eb97-11eb-a6c2-c83f1214ca79","orcid":"0000-0002-6401-5151"}],"title":"Exploring protein dynamics using specific labeling approaches for solid-state MAS NMR","publication_identifier":{"isbn":["978-3-99078-084-8"],"issn":["2663-337X"]},"alternative_title":["ISTA Thesis"],"doi_confirm":"1","_id":"22334","year":"2026","oa_version":"Published Version","degree_awarded":"PhD","date_published":"2026-07-13T00:00:00Z","type":"dissertation","acknowledged_ssus":[{"_id":"LifeSc"},{"_id":"NMR"}],"language":[{"iso":"eng"}],"month":"07","file":[{"date_created":"2026-07-16T09:17:08Z","file_id":"22346","access_level":"closed","relation":"source_file","file_size":99472908,"checksum":"8b85114eff543916c0e1445cd2189555","creator":"lbecker","content_type":"application/zip","file_name":"2026_Becker_Lea_source_files.zip","date_updated":"2026-07-16T09:17:08Z"},{"date_updated":"2026-07-16T09:17:05Z","file_name":"2026_Becker_Lea_Thesis.pdf","content_type":"application/pdf","checksum":"6c526862bc6dbd1e4c80ecb34580bc58","creator":"lbecker","file_size":74647289,"relation":"main_file","file_id":"22347","success":1,"access_level":"open_access","date_created":"2026-07-16T09:17:05Z"}],"ddc":["572"],"related_material":{"record":[{"relation":"part_of_dissertation","id":"12675","status":"public"},{"id":"21777","relation":"part_of_dissertation","status":"public"},{"status":"public","id":"12114","relation":"part_of_dissertation"},{"status":"public","id":"22105","relation":"part_of_dissertation"}]},"doi":"10.15479/AT-ISTA-22334","has_accepted_license":"1","status":"public","department":[{"_id":"GradSch"},{"_id":"PaSc"}],"project":[{"_id":"7be609c4-9f16-11ee-852c-85015ce2b9b0","grant_number":"26777","name":"Exploring protein dynamics by solid-state MAS NMR through specific labeling approaches"}],"OA_place":"publisher","corr_author":"1"},{"related_material":{"record":[{"status":"public","id":"20641","relation":"earlier_version"},{"id":"22105","relation":"used_in_publication","status":"public"}]},"doi":"10.15479/AT-ISTA-21145","corr_author":"1","department":[{"_id":"GradSch"},{"_id":"PaSc"}],"project":[{"grant_number":"26777","_id":"7be609c4-9f16-11ee-852c-85015ce2b9b0","name":"Exploring protein dynamics by solid-state MAS NMR through specific labeling approaches"}],"status":"public","has_accepted_license":"1","date_published":"2026-02-09T00:00:00Z","type":"research_data","acknowledged_ssus":[{"_id":"NMR"},{"_id":"LifeSc"}],"oa_version":"Published Version","file":[{"file_name":"README.txt","date_updated":"2026-02-05T13:52:37Z","creator":"lbecker","checksum":"02a419cce8cea450bc952f35488d2df5","content_type":"text/plain","relation":"table_of_contents","file_size":4263,"date_created":"2026-02-05T13:52:37Z","access_level":"open_access","file_id":"21146"},{"relation":"main_file","file_size":50647107,"date_created":"2026-02-05T13:52:41Z","access_level":"open_access","success":1,"file_id":"21147","file_name":"Research_Data.zip","date_updated":"2026-02-05T13:52:41Z","creator":"lbecker","checksum":"b0b82b1aa73985b0b308a3fa52d21aea","content_type":"application/zip"}],"ddc":["572"],"month":"02","date_updated":"2026-08-04T09:32:45Z","article_processing_charge":"No","day":"09","year":"2026","_id":"21145","author":[{"full_name":"Becker, Lea Marie","last_name":"Becker","id":"36336939-eb97-11eb-a6c2-c83f1214ca79","first_name":"Lea Marie","orcid":"0000-0002-6401-5151"},{"last_name":"Schanda","full_name":"Schanda, Paul","orcid":"0000-0002-9350-7606","first_name":"Paul","id":"7B541462-FAF6-11E9-A490-E8DFE5697425"},{"full_name":"Chipot, Christophe","last_name":"Chipot","first_name":"Christophe"}],"title":"Additional Data for \"Aromatic Ring Flips Reveal Reshaping of Protein Dynamics in Crystals and Complexes\"","contributor":[{"last_name":"Fu","first_name":"Haohao","contributor_type":"researcher"},{"last_name":"Tatman","id":"71cda2f3-e604-11ee-a1df-da10587eda3f","contributor_type":"researcher","first_name":"Benjamin"},{"first_name":"Matthias","contributor_type":"researcher","last_name":"Dreydoppel"},{"contributor_type":"researcher","id":"9fb2a840-89e1-11ee-a8b7-cc5c7ba62471","first_name":"Anna","last_name":"Kapitonova"},{"last_name":"Balazs","orcid":"0000-0001-7597-043X","first_name":"Daniel","contributor_type":"researcher","id":"302BADF6-85FC-11EA-9E3B-B9493DDC885E"},{"first_name":"Ulrich","contributor_type":"researcher","last_name":"Weininger"},{"last_name":"Engilberge","first_name":"Sylvain","contributor_type":"researcher"}],"abstract":[{"lang":"eng","text":"Protein conformational energy landscapes are shaped not only by intramolecular interactions but also by their environment. In protein crystals and protein-protein complexes, intermolecular contacts alter this energy landscape, but the exact nature of this alteration is difficult to decipher. Understanding how the crystal lattice affects protein dynamics is crucial for crystallography-based studies of motion, yet its influence on collective motions remains unclear. Aromatic ring flips in the hydrophobic core represent sensitive probes of such dynamics. Here, we compare the kinetics of aromatic ring flips in the protein GB1 in crystals, in complex with its binding partner IgG, and in solution, combining advanced isotope labeling with quantitative NMR methods. We show that rings in the core flip nearly a thousand times less frequently in crystals than in solution. Enhanced-sampling molecular dynamics simulations, based on a new crystal structure, reproduce these elevated barriers and reveal how the crystal restrains motions. "}],"license":"https://creativecommons.org/licenses/by-nc/4.0/","oa":1,"file_date_updated":"2026-02-05T13:52:41Z","citation":{"short":"L.M. Becker, P. Schanda, C. Chipot, (2026).","chicago":"Becker, Lea Marie, Paul Schanda, and Christophe Chipot. “Additional Data for ‘Aromatic Ring Flips Reveal Reshaping of Protein Dynamics in Crystals and Complexes.’” Institute of Science and Technology Austria, 2026. https://doi.org/10.15479/AT-ISTA-21145.","ieee":"L. M. Becker, P. Schanda, and C. Chipot, “Additional Data for ‘Aromatic Ring Flips Reveal Reshaping of Protein Dynamics in Crystals and Complexes.’” Institute of Science and Technology Austria, 2026.","ista":"Becker LM, Schanda P, Chipot C. 2026. Additional Data for ‘Aromatic Ring Flips Reveal Reshaping of Protein Dynamics in Crystals and Complexes’, Institute of Science and Technology Austria, 10.15479/AT-ISTA-21145.","mla":"Becker, Lea Marie, et al. Additional Data for “Aromatic Ring Flips Reveal Reshaping of Protein Dynamics in Crystals and Complexes.” Institute of Science and Technology Austria, 2026, doi:10.15479/AT-ISTA-21145.","ama":"Becker LM, Schanda P, Chipot C. Additional Data for “Aromatic Ring Flips Reveal Reshaping of Protein Dynamics in Crystals and Complexes.” 2026. doi:10.15479/AT-ISTA-21145","apa":"Becker, L. M., Schanda, P., & Chipot, C. (2026). Additional Data for “Aromatic Ring Flips Reveal Reshaping of Protein Dynamics in Crystals and Complexes.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT-ISTA-21145"},"tmp":{"short":"CC BY-NC (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","image":"/images/cc_by_nc.png"},"fulldoi":"https://doi.org/10.15479/AT-ISTA-21145","acknowledgement":"We thank Nikolai R. Skrynnikov and Olga O. Lebedenko (St. Petersburg) for insightful discussions and for performing exploratory MD simulations. We are grateful to Tobias Schubeis (Lyon) for advice with GB1 crystallization, and Rebecca Schmid for initial crystallization trials.\r\nWe thank Sebastian Falkner for assistance with constructing the structural model of the IgG:GB1 complex.\r\nThis research was supported by the Scientific Service Units (SSU) of Institute of Science and Technology Austria (ISTA) through resources provided by the Nuclear Magnetic Resonance and the Lab Support Facilities. We thank Petra Rovó and Margarita Valhondo Falcón for excellent support of the NMR facility.\r\nLea M. Becker is recipient of a DOC fellowship of the Austrian Academy of Sciences at the Institute of Science and Technology Austria (grant no. PR10660EAW01). Christophe Chipot acknowledges the European Research Council (grant project 101097272 ``MilliInMicro'') and the Métropole du Grand Nancy (grant project ``ARC''). BM07-FIP2 is supported by the French ANR PIA3 (France 2030) EquipEx+ project MAGNIFIX under grant agreement ANR-21-ESRE-0011.","date_created":"2026-02-05T13:54:39Z","publisher":"Institute of Science and Technology Austria","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"scopus_import":"1","doi":"10.1051/0004-6361/202659069","department":[{"_id":"LiBu"},{"_id":"GradSch"}],"project":[{"_id":"914d8549-16d5-11f0-9cad-bbe6324c93a9","name":"Unveiling the mysteries of stellar dynamics: a pioneering journey in magnetoasteroseismology","grant_number":"101165631"},{"_id":"5b62812b-ab3d-11f0-914f-8f3a9cdb4af7","grant_number":"27648","name":"Unveiling the structure and dynamics of the deep convective core - radiative zone boundary throughout stellar evolution"}],"OA_place":"publisher","status":"public","has_accepted_license":"1","corr_author":"1","type":"journal_article","date_published":"2026-04-01T00:00:00Z","intvolume":" 708","oa_version":"Published Version","language":[{"iso":"eng"}],"external_id":{"arxiv":["2601.15203"]},"volume":708,"dataavailabilitystatement":"We used MESA version 24.08.1. All inlists and relevant files are available on Zenodo at https://doi.org/10.5281/zenodo.19232789","month":"04","quality_controlled":"1","file":[{"content_type":"application/pdf","checksum":"61edee776603d7b879b06b3ea8d2bc89","creator":"dernst","date_updated":"2026-08-11T05:46:02Z","file_name":"2026_AstronomyAstrophysics_Einramhof.pdf","file_id":"22671","success":1,"access_level":"open_access","date_created":"2026-08-11T05:46:02Z","file_size":3739424,"relation":"main_file"}],"OA_type":"diamond","ddc":["520"],"day":"01","PlanS_conform":"1","article_processing_charge":"No","publication_status":"published","arxiv":1,"date_updated":"2026-08-11T05:49:20Z","publication":"Astronomy & Astrophysics","title":"Magneto-archeology of white dwarfs","author":[{"last_name":"Einramhof","full_name":"Einramhof, Lukas","first_name":"Lukas","id":"f1497a1a-72ef-11ef-b75a-fd877bbf6e8c"},{"full_name":"Bugnet, Lisa Annabelle","last_name":"Bugnet","orcid":"0000-0003-0142-4000","id":"d9edb345-f866-11ec-9b37-d119b5234501","first_name":"Lisa Annabelle"},{"full_name":"Calcaferro, L. M.","last_name":"Calcaferro","first_name":"L. M."},{"id":"4471a8fd-32c1-11ee-a9a4-fb670d398f64","first_name":"Lucas","last_name":"Barrault","full_name":"Barrault, Lucas"},{"full_name":"Das, S. B.","last_name":"Das","first_name":"S. B."}],"abstract":[{"lang":"eng","text":"The detection of strong, large-scale magnetic fields at the surfaces of the oldest white dwarfs might point toward a hidden internal magnetic field slowly rising to the surface. In addition, strong magnetic fields have recently been measured through asteroseismology in the radiative interiors of red giant stars, the progenitors of white dwarfs. To investigate the potential connection between these observations, we revisited the fossil field framework using asteroseismic detections to constrain the strength of such magnetic fields as red giants evolve into the white dwarf stage. We assumed that the magnetic field was either created during the core convection on the main sequence or that it fills the radiative interior as the star evolves on the red giant branch. From these initial conditions, we evolved the magnetic flux, allowing for magnetic diffusion along the evolution of a modeled 1.5 M⊙ star. We find that measured field strengths in red giants attributed to the hydrogen-burning shell are compatible with the field amplitudes and emergence timescales of magnetized white dwarfs. On the contrary, magnetic fields generated solely from a convective-core dynamo on the main sequence and detectable on the red giant branch would be buried too deep in the star and would not match the breakout timescales or the field strengths of magnetic white dwarfs. Therefore, for us to connect magnetic fields observed along the late evolution of stars via a fossil field we would need to find a broadly magnetized internal radiative zone on the red giant branch."}],"year":"2026","_id":"22663","publication_identifier":{"eissn":["1432-0746"],"issn":["0004-6361"]},"oa":1,"article_number":"L14","das_tickbox":"1","file_date_updated":"2026-08-11T05:46:02Z","researchdata_availability":"yes","supplementarymaterial":"yes","citation":{"ama":"Einramhof L, Bugnet LA, Calcaferro LM, Barrault L, Das SB. Magneto-archeology of white dwarfs. Astronomy & Astrophysics. 2026;708. doi:10.1051/0004-6361/202659069","mla":"Einramhof, Lukas, et al. “Magneto-Archeology of White Dwarfs.” Astronomy & Astrophysics, vol. 708, L14, EDP Sciences, 2026, doi:10.1051/0004-6361/202659069.","apa":"Einramhof, L., Bugnet, L. A., Calcaferro, L. M., Barrault, L., & Das, S. B. (2026). Magneto-archeology of white dwarfs. Astronomy & Astrophysics. EDP Sciences. https://doi.org/10.1051/0004-6361/202659069","ista":"Einramhof L, Bugnet LA, Calcaferro LM, Barrault L, Das SB. 2026. Magneto-archeology of white dwarfs. Astronomy & Astrophysics. 708, L14.","ieee":"L. Einramhof, L. A. Bugnet, L. M. Calcaferro, L. Barrault, and S. B. Das, “Magneto-archeology of white dwarfs,” Astronomy & Astrophysics, vol. 708. EDP Sciences, 2026.","chicago":"Einramhof, Lukas, Lisa Annabelle Bugnet, L. M. Calcaferro, Lucas Barrault, and S. B. Das. “Magneto-Archeology of White Dwarfs.” Astronomy & Astrophysics. EDP Sciences, 2026. https://doi.org/10.1051/0004-6361/202659069.","short":"L. Einramhof, L.A. Bugnet, L.M. Calcaferro, L. Barrault, S.B. Das, Astronomy & Astrophysics 708 (2026)."},"article_type":"original","date_created":"2026-08-10T07:53:32Z","DOAJ_listed":"1","publisher":"EDP Sciences","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"fulldoi":"https://doi.org/10.1051/0004-6361/202659069","acknowledgement":"The authors thank the referee for their helpful and constructive report, which has significantly enhanced the quality of the manuscript.\r\nThe authors thank I. Caiazzo, L. Ferrario, and L. Buchele for very useful discussions. L. Barrault, L. Bugnet, and L. Einramhof gratefully acknowledge support from the European Research Council (ERC) under the Horizon Europe\r\nprogramme (Calcifer; Starting Grant agreement N◦101165631). L. Barrault\r\nacknowledges the support of the Austrian Academy of Sciences through the Doctoral Fellowship Programme (DOC) of the Austrian Academy of Sciences 27648.\r\nWhile partially funded by the European Union, views and opinions expressed\r\nare, however, those of the authors only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union\r\nnor the granting authority can be held responsible for them."},{"related_material":{"record":[{"status":"public","id":"12237","relation":"part_of_dissertation"},{"status":"public","relation":"part_of_dissertation","id":"17124"},{"status":"public","relation":"part_of_dissertation","id":"17052"}]},"doi":"10.15479/AT-ISTA-22626","corr_author":"1","department":[{"_id":"GradSch"},{"_id":"MaIb"}],"OA_place":"publisher","project":[{"name":"HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery","_id":"9B8F7476-BA93-11EA-9121-9846C619BF3A"}],"status":"public","has_accepted_license":"1","language":[{"iso":"eng"}],"date_published":"2026-08-05T00:00:00Z","type":"dissertation","oa_version":"Published Version","degree_awarded":"PhD","file":[{"file_name":"2026_Fiedler_Christine_Thesis.docx","date_updated":"2026-08-07T10:02:41Z","checksum":"4f357f3c0f5ee3d679dd0395dbafc4bb","creator":"cfiedler","content_type":"application/vnd.openxmlformats-officedocument.wordprocessingml.document","relation":"source_file","file_size":625541367,"date_created":"2026-08-07T09:10:56Z","file_id":"22659","access_level":"closed"},{"date_updated":"2026-08-07T10:16:07Z","file_name":"2026_Fiedler_Christine_Thesis.pdf","embargo":"2027-02-07","content_type":"application/pdf","checksum":"69784d2e7b9ef3d3a0fbe134f3bba089","creator":"cfiedler","file_size":16646551,"relation":"main_file","embargo_to":"open_access","file_id":"22660","access_level":"closed","date_created":"2026-08-07T09:10:45Z"}],"ddc":["540","546","530"],"month":"08","supervisor":[{"full_name":"Ibáñez, Maria","last_name":"Ibáñez","first_name":"Maria","id":"43C61214-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5013-2843"}],"date_updated":"2026-08-11T12:39:15Z","day":"05","article_processing_charge":"No","publication_status":"published","doi_confirm":"1","alternative_title":["ISTA Thesis"],"_id":"22626","year":"2026","publication_identifier":{"issn":["2663-337X"],"isbn":["978-3-99078-086-2"]},"author":[{"last_name":"Fiedler","full_name":"Fiedler, Christine","first_name":"Christine","id":"bd3fceba-dc74-11ea-a0a7-c17f71817366"}],"title":"Mechanistic insight into solution-processed p-type tin chalcogenides as a basis for designing their n-type analogs","page":"141","file_date_updated":"2026-08-07T10:16:07Z","citation":{"apa":"Fiedler, C. (2026). Mechanistic insight into solution-processed p-type tin chalcogenides as a basis for designing their n-type analogs. Institute of Science and Technology Austria. https://doi.org/10.15479/AT-ISTA-22626","ama":"Fiedler C. Mechanistic insight into solution-processed p-type tin chalcogenides as a basis for designing their n-type analogs. 2026. doi:10.15479/AT-ISTA-22626","mla":"Fiedler, Christine. Mechanistic Insight into Solution-Processed p-Type Tin Chalcogenides as a Basis for Designing Their n-Type Analogs. Institute of Science and Technology Austria, 2026, doi:10.15479/AT-ISTA-22626.","ista":"Fiedler C. 2026. Mechanistic insight into solution-processed p-type tin chalcogenides as a basis for designing their n-type analogs. Institute of Science and Technology Austria.","ieee":"C. Fiedler, “Mechanistic insight into solution-processed p-type tin chalcogenides as a basis for designing their n-type analogs,” Institute of Science and Technology Austria, 2026.","chicago":"Fiedler, Christine. “Mechanistic Insight into Solution-Processed p-Type Tin Chalcogenides as a Basis for Designing Their n-Type Analogs.” Institute of Science and Technology Austria, 2026. https://doi.org/10.15479/AT-ISTA-22626.","short":"C. Fiedler, Mechanistic Insight into Solution-Processed p-Type Tin Chalcogenides as a Basis for Designing Their n-Type Analogs, Institute of Science and Technology Austria, 2026."},"tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"acknowledgement":"This thesis and the publications within, were financially supported by the Institute of Science and Technology Austria and the Werner Siemens Foundation under the project “High Thermoelectric Materials: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery”.","fulldoi":"https://doi.org/10.15479/AT-ISTA-22626","date_created":"2026-08-03T07:55:16Z","publisher":"Institute of Science and Technology Austria","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9"},{"article_number":"41:1-41:18","oa":1,"supplementarymaterial":"no","citation":{"mla":"Edelsbrunner, Herbert, et al. “The Depth Poset under Transpositions in the Filter.” 42nd International Symposium on Computational Geometry, vol. 367, 41:1-41:18, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026, doi:10.4230/LIPICS.SOCG.2026.41.","apa":"Edelsbrunner, H., Lipiński, M., Mrozek, M., Soriano Trigueros, M., & Zimin, F. (2026). The depth poset under transpositions in the filter. In 42nd International Symposium on Computational Geometry (Vol. 367). New Brunswick, NJ, United States: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPICS.SOCG.2026.41","ama":"Edelsbrunner H, Lipiński M, Mrozek M, Soriano Trigueros M, Zimin F. The depth poset under transpositions in the filter. In: 42nd International Symposium on Computational Geometry. Vol 367. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2026. doi:10.4230/LIPICS.SOCG.2026.41","ista":"Edelsbrunner H, Lipiński M, Mrozek M, Soriano Trigueros M, Zimin F. 2026. The depth poset under transpositions in the filter. 42nd International Symposium on Computational Geometry. SoCG: Symposium on Computational Geometry, LIPIcs, vol. 367, 41:1-41:18.","ieee":"H. Edelsbrunner, M. Lipiński, M. Mrozek, M. Soriano Trigueros, and F. Zimin, “The depth poset under transpositions in the filter,” in 42nd International Symposium on Computational Geometry, New Brunswick, NJ, United States, 2026, vol. 367.","chicago":"Edelsbrunner, Herbert, Michał Lipiński, Marian Mrozek, Manuel Soriano Trigueros, and Fedor Zimin. “The Depth Poset under Transpositions in the Filter.” In 42nd International Symposium on Computational Geometry, Vol. 367. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026. https://doi.org/10.4230/LIPICS.SOCG.2026.41.","short":"H. Edelsbrunner, M. Lipiński, M. Mrozek, M. Soriano Trigueros, F. Zimin, in:, 42nd International Symposium on Computational Geometry, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026."},"researchdata_availability":"no","file_date_updated":"2026-07-14T06:08:05Z","das_tickbox":"0","publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","date_created":"2026-07-13T09:56:38Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"fulldoi":"https://doi.org/10.4230/LIPICS.SOCG.2026.41","acknowledgement":"The authors thank Jakub Leśkiewicz and Bartosz Furmanek for discussions\r\nthat helped improve the paper. Herbert Edelsbrunner: DFG Collaborative Research Center TRR 109, Austrian Science\r\nFund (FWF), grant no. I 02979-N35\r\nMichał Lipiński: European Union’s Horizon 2020 research and innovation programme under the\r\nMarie Skłodowska-Curie Grant Agreement No. 101034413\r\nMarian Mrozek: Polish National Science Center under Opus Grant 2019/35/B/ST1/00874 and Opus\r\nGrant 2025/57/B/ST1/00550","publication_status":"published","day":"27","article_processing_charge":"Yes","ec_funded":1,"arxiv":1,"date_updated":"2026-08-12T09:02:56Z","title":"The depth poset under transpositions in the filter","author":[{"orcid":"0000-0002-9823-6833","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","first_name":"Herbert","last_name":"Edelsbrunner","full_name":"Edelsbrunner, Herbert"},{"id":"dfffb474-4317-11ee-8f5c-fe3fc95a425e","first_name":"Michał","orcid":"0000-0001-9789-9750","full_name":"Lipiński, Michał","last_name":"Lipiński"},{"full_name":"Mrozek, Marian","last_name":"Mrozek","first_name":"Marian","orcid":"0000-0002-0619-6417"},{"full_name":"Soriano Trigueros, Manuel","last_name":"Soriano Trigueros","first_name":"Manuel","id":"15ebd7cf-15bf-11ee-aebd-bb4bb5121ea8","orcid":"0000-0003-2449-1433"},{"last_name":"Zimin","full_name":"Zimin, Fedor","first_name":"Fedor","id":"afd27eda-91c1-11f0-aad8-c6edbec24c04"}],"publication":"42nd International Symposium on Computational Geometry","abstract":[{"lang":"eng","text":"The depth poset of a filtered Lefschetz complex reflects the dependencies between the cancellations of different shallow birth-death pairs. Using the fast algorithms for computing the depth poset in [Edelsbrunner et al., 2026] and for updating the persistence diagram under transpositions in [Cohen-Steiner et al., 2006], we give a complete case analysis of how transpositions of cells in the filter affect the depth poset. In addition, we present statistics on the depth poset for random point data and its sensitivity to the transpositions that occur in random straight-line homotopies."}],"conference":{"end_date":"2026-06-05","start_date":"2026-06-02","location":"New Brunswick, NJ, United States","name":"SoCG: Symposium on Computational Geometry"},"_id":"22299","year":"2026","alternative_title":["LIPIcs"],"publication_identifier":{"isbn":["9783959774185"],"eissn":["1868-8969"]},"intvolume":" 367","date_published":"2026-05-27T00:00:00Z","type":"conference","oa_version":"Published Version","external_id":{"arxiv":["2511.21961"]},"volume":367,"keyword":["Algebraic topology","Lefschetz complexes","persistent homology","vines and vineyards","birth-death pairs","shallow pairs","relations","partial orders","transpositions","Theory of computation → Computational geometry"],"language":[{"iso":"eng"}],"month":"05","quality_controlled":"1","ddc":["500"],"OA_type":"gold","file":[{"relation":"main_file","file_size":2902144,"date_created":"2026-07-14T06:08:05Z","file_id":"22329","success":1,"access_level":"open_access","file_name":"2026_LIPIcSSoCG_Edelsbrunner.pdf","date_updated":"2026-07-14T06:08:05Z","checksum":"9dfb96ee66985c724b499b0e5888dc8e","creator":"dernst","content_type":"application/pdf"}],"scopus_import":"1","doi":"10.4230/LIPICS.SOCG.2026.41","OA_place":"publisher","project":[{"grant_number":"I02979-N35","_id":"2561EBF4-B435-11E9-9278-68D0E5697425","name":"Persistence and stability of geometric complexes","call_identifier":"FWF"},{"call_identifier":"H2020","name":"IST-BRIDGE: International postdoctoral program","grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c"}],"department":[{"_id":"HeEd"},{"_id":"GradSch"}],"has_accepted_license":"1","status":"public","corr_author":"1"},{"volume":16682,"external_id":{"arxiv":["2603.07094"]},"language":[{"iso":"eng"}],"intvolume":" 16682","date_published":"2026-07-24T00:00:00Z","type":"conference","oa_version":"Published Version","quality_controlled":"1","OA_type":"hybrid","ddc":["000"],"file":[{"access_level":"open_access","file_id":"22724","success":1,"date_created":"2026-08-18T06:53:22Z","file_size":1902192,"relation":"main_file","content_type":"application/pdf","creator":"dernst","checksum":"10ded8a3ab9ed34c9e4794c0b277622c","date_updated":"2026-08-18T06:53:22Z","file_name":"2026_LNCS_Brice.pdf"}],"month":"07","dataavailabilitystatement":"The artifact can be accessed at the link: https://doi. org/10.5281/zenodo.19680359.\r\nThe source code is available at:https://github.com/alipashamontaseri/Team-Concurrent-Game.","doi":"10.1007/978-3-032-32519-8_12","scopus_import":"1","OA_place":"publisher","project":[{"call_identifier":"H2020","_id":"62781420-2b32-11ec-9570-8d9b63373d4d","grant_number":"101020093","name":"Vigilant Algorithmic Monitoring of Software"}],"department":[{"_id":"ToHe"},{"_id":"GradSch"}],"status":"public","has_accepted_license":"1","oa":1,"supplementarymaterial":"no","citation":{"short":"L.J. Brice, T.A. Henzinger, A. Montaseri, A. Shafiee, K.S. Thejaswini, in:, 38th International Conference on Computer Aided Verification, Springer Nature, 2026, pp. 215–236.","chicago":"Brice, Leonard J, Thomas A Henzinger, Alipasha Montaseri, Ali Shafiee, and K. S. Thejaswini. “Randomise Alone, Reach as a Team.” In 38th International Conference on Computer Aided Verification, 16682:215–36. Springer Nature, 2026. https://doi.org/10.1007/978-3-032-32519-8_12.","ieee":"L. J. Brice, T. A. Henzinger, A. Montaseri, A. Shafiee, and K. S. Thejaswini, “Randomise alone, reach as a team,” in 38th International Conference on Computer Aided Verification, Lisbon, Portugal, 2026, vol. 16682, pp. 215–236.","apa":"Brice, L. J., Henzinger, T. A., Montaseri, A., Shafiee, A., & Thejaswini, K. S. (2026). Randomise alone, reach as a team. In 38th International Conference on Computer Aided Verification (Vol. 16682, pp. 215–236). Lisbon, Portugal: Springer Nature. https://doi.org/10.1007/978-3-032-32519-8_12","ama":"Brice LJ, Henzinger TA, Montaseri A, Shafiee A, Thejaswini KS. Randomise alone, reach as a team. In: 38th International Conference on Computer Aided Verification. Vol 16682. Springer Nature; 2026:215-236. doi:10.1007/978-3-032-32519-8_12","mla":"Brice, Leonard J., et al. “Randomise Alone, Reach as a Team.” 38th International Conference on Computer Aided Verification, vol. 16682, Springer Nature, 2026, pp. 215–36, doi:10.1007/978-3-032-32519-8_12.","ista":"Brice LJ, Henzinger TA, Montaseri A, Shafiee A, Thejaswini KS. 2026. Randomise alone, reach as a team. 38th International Conference on Computer Aided Verification. CAV: Computer Aided Verification vol. 16682, 215–236."},"researchdata_availability":"yes","das_tickbox":"1","file_date_updated":"2026-08-18T06:53:22Z","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"acknowledgement":"This work is a part of project VAMOS that has received funding from the European Research Council (ERC), grant agreement No 101020093. Part of this work was realised when the first author was an FNRS aspirant at Université libre de Bruxelles.","fulldoi":"https://doi.org/10.1007/978-3-032-32519-8_12","publisher":"Springer Nature","date_created":"2026-08-16T22:01:44Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","arxiv":1,"date_updated":"2026-08-18T06:55:38Z","publication_status":"published","day":"24","article_processing_charge":"Yes (in subscription journal)","ec_funded":1,"conference":{"location":"Lisbon, Portugal","name":"CAV: Computer Aided Verification","end_date":"2026-07-29","start_date":"2026-07-26"},"_id":"22717","year":"2026","publication_identifier":{"isbn":["9783032325181"],"eissn":["1611-3349"],"issn":["0302-9743"]},"author":[{"last_name":"Brice","full_name":"Brice, Leonard J","first_name":"Leonard J","id":"ce3b3409-db6c-11f0-aa64-ad678f7fd937"},{"last_name":"Henzinger","full_name":"Henzinger, Thomas A","orcid":"0000-0002-2985-7724","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas A"},{"full_name":"Montaseri, Alipasha","last_name":"Montaseri","first_name":"Alipasha","id":"709a7f96-8896-11f0-9809-d75612fc0f2e"},{"first_name":"Ali","id":"2783031a-7378-11f0-b2d0-f17f1db2ebad","last_name":"Shafiee","full_name":"Shafiee, Ali"},{"last_name":"Thejaswini","full_name":"Thejaswini, K. S.","first_name":"K. S."}],"title":"Randomise alone, reach as a team","publication":"38th International Conference on Computer Aided Verification","abstract":[{"text":"We study concurrent graph games where n players cooperate against an opponent to reach a set of target states. Unlike traditional settings, we study distributed randomisation: team players do not share a source of randomness, and their private random sources are hidden from the opponent and from each other.\r\n\r\nWe show that memoryless strategies are sufficient for the threshold problem (deciding whether there is a strategy for the team that ensures winning with probability that exceeds a threshold), a result that not only places the problem in the Existential Theory of the Reals (ER) but also enables the construction of value iteration algorithms. We additionally show that the threshold problem is NP-hard. For the almost-sure reachability problem, we prove NP-completeness.\r\n\r\nWe introduce Individually Randomised Alternating-time Temporal Logic (IRATL). This logic extends the standard ATL framework to reason about probability thresholds, with semantics explicitly designed for coalitions that lack a shared source of randomness. On the practical side, we implement and evaluate a solver for the threshold and almost-sure problem based on the algorithms that we develop.","lang":"eng"}],"page":"215-236"},{"article_processing_charge":"No","day":"01","publication_status":"published","date_updated":"2026-08-18T06:36:55Z","arxiv":1,"page":"100760-100799","abstract":[{"lang":"eng","text":"The local structure of a protein strongly impacts its function and interactions\r\nwith other molecules. Representing local biomolecular environments remains a\r\nkey challenge while applying machine learning approaches over protein structures. The structural and chemical variability of these environments makes them\r\nchallenging to model, and performing representation learning on these objects\r\nremains largely under-explored. In this work, we propose representations for\r\nlocal protein environments that leverage intermediate features from machine learning force fields (MLFFs). We extensively benchmark state-of-the-art MLFFs,\r\ncomparing their performance across latent spaces and downstream tasks, and\r\nshow that their embeddings capture local structural (e.g., secondary motifs) and\r\nchemical features (e.g., amino acid identity and protonation state), organizing\r\nprotein environments into a structured manifold. We show that these representations enable zero-shot generalization and transfer across diverse downstream\r\ntasks. As a case study, we build a physics-informed, uncertainty-aware chemical shift predictor that achieves state-of-the-art accuracy in biomolecular NMR\r\nspectroscopy. Our results establish MLFFs as general-purpose, reusable representation learners for protein modeling, opening new directions in representation learning for structured physical systems. Code and data are available at\r\nhttps://github.com/mb012/MLFF_representation.\r\n"}],"author":[{"full_name":"Bojan, Meital I","last_name":"Bojan","first_name":"Meital I","id":"11d88cf5-91ca-11f0-a95f-edf9f08f47b7"},{"first_name":"Sanketh","last_name":"Vedula","full_name":"Vedula, Sanketh"},{"last_name":"Maddipatla","full_name":"Maddipatla, Sai A","first_name":"Sai A","id":"e957f5e5-91c9-11f0-a95f-e090f66ecb4d"},{"first_name":"Nadav E","id":"ef280fe0-91c9-11f0-a95f-8dea3f5bc513","last_name":"Sellam","full_name":"Sellam, Nadav E"},{"first_name":"Anar","id":"2cd60677-9acd-11f1-ae1a-a85ae1c4dd35","last_name":"Rzayev","full_name":"Rzayev, Anar"},{"last_name":"Napoli","full_name":"Napoli, Federico","first_name":"Federico","id":"d42e08e7-f4fc-11eb-af0a-d71e26138f1b","orcid":"0000-0002-9043-136X"},{"orcid":"0000-0002-9350-7606","first_name":"Paul","id":"7B541462-FAF6-11E9-A490-E8DFE5697425","full_name":"Schanda, Paul","last_name":"Schanda"},{"last_name":"Bronstein","full_name":"Bronstein, Alexander","orcid":"0000-0001-9699-8730","first_name":"Alexander","id":"58f3726e-7cba-11ef-ad8b-e6e8cb3904e6"}],"title":"Representing local protein environments with machine learning force fields","publication":"14th International Conference on Learning Representations","year":"2026","_id":"22722","conference":{"name":"ICLR: International Conference on Learning Representations","location":"Rio de Janeiro, Brazil","end_date":"2026-04-27","start_date":"2026-04-23"},"file_date_updated":"2026-08-18T06:33:14Z","das_tickbox":"1","citation":{"short":"M.I. Bojan, S. Vedula, S.A. Maddipatla, N.E. Sellam, A. Rzayev, F. Napoli, P. Schanda, A.M. Bronstein, in:, 14th International Conference on Learning Representations, 2026, pp. 100760–100799.","chicago":"Bojan, Meital I, Sanketh Vedula, Sai A Maddipatla, Nadav E Sellam, Anar Rzayev, Federico Napoli, Paul Schanda, and Alex M. Bronstein. “Representing Local Protein Environments with Machine Learning Force Fields.” In 14th International Conference on Learning Representations, 2026:100760–99, 2026.","ieee":"M. I. Bojan et al., “Representing local protein environments with machine learning force fields,” in 14th International Conference on Learning Representations, Rio de Janeiro, Brazil, 2026, vol. 2026, pp. 100760–100799.","ista":"Bojan MI, Vedula S, Maddipatla SA, Sellam NE, Rzayev A, Napoli F, Schanda P, Bronstein AM. 2026. Representing local protein environments with machine learning force fields. 14th International Conference on Learning Representations. ICLR: International Conference on Learning Representations vol. 2026, 100760–100799.","ama":"Bojan MI, Vedula S, Maddipatla SA, et al. Representing local protein environments with machine learning force fields. In: 14th International Conference on Learning Representations. Vol 2026. ; 2026:100760-100799.","mla":"Bojan, Meital I., et al. “Representing Local Protein Environments with Machine Learning Force Fields.” 14th International Conference on Learning Representations, vol. 2026, 2026, pp. 100760–99.","apa":"Bojan, M. I., Vedula, S., Maddipatla, S. A., Sellam, N. E., Rzayev, A., Napoli, F., … Bronstein, A. M. (2026). Representing local protein environments with machine learning force fields. In 14th International Conference on Learning Representations (Vol. 2026, pp. 100760–100799). Rio de Janeiro, Brazil."},"supplementarymaterial":"yes","researchdata_availability":"yes","oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2026-08-17T12:03:24Z","acknowledgement":"This work was supported by the Institute of Science and Technology Austria (ISTA) through the IPC\r\ngrant “Generative Protein NMR” and by the Israeli Science Foundation (ISF) under grant number\r\n1834/24. This research used resources of the Institute of Science and Technology Austria’s scientific\r\ncomputing cluster. S.V. was supported in part by funding from the Eric and Wendy Schmidt Center at\r\nthe Broad Institute of MIT and Harvard.","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"related_material":{"link":[{"url":"https://github.com/mb012/MLFF_representation","relation":"software"}]},"status":"public","has_accepted_license":"1","department":[{"_id":"GradSch"},{"_id":"PaSc"},{"_id":"AlBr"}],"OA_place":"publisher","corr_author":"1","oa_version":"Published Version","date_published":"2026-05-01T00:00:00Z","type":"conference","intvolume":" 2026","acknowledged_ssus":[{"_id":"ScienComp"}],"language":[{"iso":"eng"}],"external_id":{"arxiv":["2505.23354"]},"volume":2026,"dataavailabilitystatement":"The code, trained models, and data-processing scripts are publicly available at https://github.\r\ncom/mb012/MLFF_representation. In addition, complete details of the models and optimization parameters are provided in Appendix G.3. The hardware resources used to produce the\r\nresults are specified in Appendix I.4. The loss functions, evaluation metrics, and details regarding\r\nablation studies are specified in Appendix G. These details ensure that all results reported in the paper\r\ncan be independently verified.","month":"05","file":[{"file_name":"2026_ICLR_Bojan.pdf","date_updated":"2026-08-18T06:33:14Z","creator":"dernst","checksum":"9f43f5469443388ec55388d95c4cf243","content_type":"application/pdf","relation":"main_file","file_size":8534339,"date_created":"2026-08-18T06:33:14Z","access_level":"open_access","success":1,"file_id":"22723"}],"ddc":["000","570"],"OA_type":"gold","quality_controlled":"1"},{"project":[{"grant_number":"101162145","name":"Circadian structural transitions of chromatin","_id":"9136c684-16d5-11f0-9cad-91c0177b365f"}],"OA_place":"publisher","department":[{"_id":"GradSch"},{"_id":"AlMi"}],"status":"public","has_accepted_license":"1","doi":"10.1038/s41556-026-02041-4","pmid":1,"scopus_import":"1","main_file_link":[{"url":"https://doi.org/10.1038/s41556-026-02041-4","open_access":"1"}],"quality_controlled":"1","ddc":["570"],"OA_type":"hybrid","month":"08","dataavailabilitystatement":"Proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE64 partner repository with the dataset identifiers PXD062751 and PXD077567. RNA-seq data are available in the European Nucleotide Archive (ENA) under accession no. PRJEB93884, and ChIP–seq data at the Gene Expression Omnibus (GEO) under accession no. GSE302237. AlphaFold 3 interaction prediction parameters can be provided during the revision process on editorial and/or review request. Source data are provided with this paper.","external_id":{"pmid":["42562924"]},"language":[{"iso":"eng"}],"type":"journal_article","date_published":"2026-08-06T00:00:00Z","oa_version":"Published Version","year":"2026","_id":"22720","publication_identifier":{"eissn":["1476-4679"],"issn":["1465-7392"]},"publication":"Nature Cell Biology","title":"CLOCK/BMAL1 interactome uncovers homeodomain factors as tissue regulators","author":[{"last_name":"Aygenli","full_name":"Aygenli, Fatih","first_name":"Fatih"},{"last_name":"Huschet","full_name":"Huschet, Lukas A.","first_name":"Lukas A."},{"last_name":"Popp","full_name":"Popp, Tanja","first_name":"Tanja"},{"first_name":"Andrea","last_name":"Ribeiro","full_name":"Ribeiro, Andrea"},{"orcid":"0000-0002-0062-2817","first_name":"Darina","id":"db547c8c-329f-11ee-a353-cde802618f9e","last_name":"Barkhatova","full_name":"Barkhatova, Darina"},{"first_name":"Céline","last_name":"Jouffe","full_name":"Jouffe, Céline"},{"first_name":"Ricardo","full_name":"Trozzo, Ricardo","last_name":"Trozzo"},{"first_name":"Jerome S.","full_name":"Menet, Jerome S.","last_name":"Menet"},{"first_name":"Roland","last_name":"Rad","full_name":"Rad, Roland"},{"first_name":"Kenneth A.","full_name":"Dyar, Kenneth A.","last_name":"Dyar"},{"first_name":"Maciej","full_name":"Lech, Maciej","last_name":"Lech"},{"first_name":"Tobias","last_name":"Straub","full_name":"Straub, Tobias"},{"last_name":"Michael","full_name":"Michael, Alicia","id":"6437c950-2a03-11ee-914d-d6476dd7b75c","first_name":"Alicia","orcid":"0000-0002-6080-839X"},{"full_name":"Robles, Maria S.","last_name":"Robles","first_name":"Maria S."}],"abstract":[{"lang":"eng","text":"Circadian clocks underlie daily rhythms in physiology by coordinating temporal patterns of gene expression and protein function throughout the body. At the core of this system in mammals is CLOCK/BMAL1, a ubiquitously expressed heterodimeric transcription factor complex that orchestrates tissue-specific circadian gene expression. The basis for this specificity remains unclear, but tissue-specific interactions at chromatin could provide one. Here we used chromatin immunoprecipitation coupled to mass spectrometry to map CLOCK/BMAL1-associated protein complexes on chromatin in mouse liver, kidney and lung. We detected 1,510 associated proteins, most of which were tissue-specific and not explained by protein abundance. Among these, we identified the homeodomain transcription factors PROX1, HNF1B and HOXA5 as tissue-enriched interactors that bind BMAL1, co-occupy most BMAL1 genomic sites and establish organ-restricted circadian transcription. Our findings demonstrate that tissue-specific transcription factors confer cellular identity on the core clock, thereby contributing to organ-specific patterns of rhythmic gene expression."}],"date_updated":"2026-08-18T08:03:22Z","publication_status":"epub_ahead","PlanS_conform":"1","article_processing_charge":"Yes (via OA deal)","day":"06","tmp":{"short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode"},"fulldoi":"https://doi.org/10.1038/s41556-026-02041-4","acknowledgement":"We thank all members of the Robles’ group for critical comments on and edits to this paper. We thank S. Kay for providing dihXY HCC cell lines and D. Firsov and Y. Bignon for mouse BMAL1-knockout (KO) kidney tissues. This work was supported by the German Research Foundation (DFG) project no. 213249687—SFB 1064 and RO 5675/1-1 to M.S.R., F.A. and L.A.H. M.S.R was also supported by DFG INST 86/1800-1 FUGG and LMU Munich’s Institutional Strategy LMU excellent within the framework of the German Excellence Initiative. J.S.M. was supported by US National Institutes of Health grant nos. R01GM145737 and R01DK128133. A.K.M. was supported by an ERC grant ‘ChromaChrono’ 101162145. Open access funding provided by Ludwig-Maximilians-Universität München.","publisher":"Springer Nature","date_created":"2026-08-16T22:01:44Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_type":"original","oa":1,"supplementarymaterial":"yes","researchdata_availability":"yes","citation":{"apa":"Aygenli, F., Huschet, L. A., Popp, T., Ribeiro, A., Barkhatova, D., Jouffe, C., … Robles, M. S. (2026). CLOCK/BMAL1 interactome uncovers homeodomain factors as tissue regulators. Nature Cell Biology. Springer Nature. https://doi.org/10.1038/s41556-026-02041-4","mla":"Aygenli, Fatih, et al. “CLOCK/BMAL1 Interactome Uncovers Homeodomain Factors as Tissue Regulators.” Nature Cell Biology, Springer Nature, 2026, doi:10.1038/s41556-026-02041-4.","ama":"Aygenli F, Huschet LA, Popp T, et al. CLOCK/BMAL1 interactome uncovers homeodomain factors as tissue regulators. Nature Cell Biology. 2026. doi:10.1038/s41556-026-02041-4","ista":"Aygenli F, Huschet LA, Popp T, Ribeiro A, Barkhatova D, Jouffe C, Trozzo R, Menet JS, Rad R, Dyar KA, Lech M, Straub T, Michael AK, Robles MS. 2026. CLOCK/BMAL1 interactome uncovers homeodomain factors as tissue regulators. Nature Cell Biology.","ieee":"F. Aygenli et al., “CLOCK/BMAL1 interactome uncovers homeodomain factors as tissue regulators,” Nature Cell Biology. Springer Nature, 2026.","short":"F. Aygenli, L.A. Huschet, T. Popp, A. Ribeiro, D. Barkhatova, C. Jouffe, R. Trozzo, J.S. Menet, R. Rad, K.A. Dyar, M. Lech, T. Straub, A.K. Michael, M.S. Robles, Nature Cell Biology (2026).","chicago":"Aygenli, Fatih, Lukas A. Huschet, Tanja Popp, Andrea Ribeiro, Darina Barkhatova, Céline Jouffe, Ricardo Trozzo, et al. “CLOCK/BMAL1 Interactome Uncovers Homeodomain Factors as Tissue Regulators.” Nature Cell Biology. Springer Nature, 2026. https://doi.org/10.1038/s41556-026-02041-4."},"das_tickbox":"1"}]