---
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abstract:
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  text: In standard quantum electrodynamics (QED), the so-called non-minimal (Pauli)
    coupling is suppressed for elementary particles and has no physical implications.
    Here, we show that the Pauli term naturally appears in a known family of Dirac
    materials—the lead-halide perovskites, suggesting a novel playground for the study
    of analog QED effects. We outline measurable manifestations of the Pauli term
    in the phenomena pertaining to (i) relativistic corrections to bound states (ii)
    the Klein paradox, and (iii) spin effects in scattering. In particular, we demonstrate
    that (a) the binding energy of an electron in the vicinity of a positively charged
    defect is noticeably decreased due to the polarizability of lead ions and the
    appearance of a Darwin-like term, (b) strong spin-orbit coupling due to the Pauli
    term affects the exciton states, and (c) scattering of an electron off an energy
    barrier with broken mirror symmetry produces spin polarization in the outgoing
    current. Our study adds to the understanding of quantum phenomena in lead-halide
    perovskites and paves the way for tabletop simulations of analog Dirac-Pauli equations.
article_number: '37'
article_processing_charge: Yes
article_type: original
author:
- first_name: Abhishek
  full_name: Shiva Kumar, Abhishek
  id: 5e9a6931-eb97-11eb-a6c2-e96f7058d77a
  last_name: Shiva Kumar
- first_name: Mikhail
  full_name: Maslov, Mikhail
  id: 2E65BB0E-F248-11E8-B48F-1D18A9856A87
  last_name: Maslov
  orcid: 0000-0003-4074-2570
- first_name: Mikhail
  full_name: Lemeshko, Mikhail
  id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
  last_name: Lemeshko
  orcid: 0000-0002-6990-7802
- first_name: Artem
  full_name: Volosniev, Artem
  id: 37D278BC-F248-11E8-B48F-1D18A9856A87
  last_name: Volosniev
  orcid: 0000-0003-0393-5525
- first_name: Zhanybek
  full_name: Alpichshev, Zhanybek
  id: 45E67A2A-F248-11E8-B48F-1D18A9856A87
  last_name: Alpichshev
  orcid: 0000-0002-7183-5203
citation:
  ama: Shiva Kumar A, Maslov M, Lemeshko M, Volosniev A, Alpichshev Z. Massive Dirac-Pauli
    physics in lead-halide perovskites. <i>npj Quantum Materials</i>. 2025;10. doi:<a
    href="https://doi.org/10.1038/s41535-025-00754-7">10.1038/s41535-025-00754-7</a>
  apa: Shiva Kumar, A., Maslov, M., Lemeshko, M., Volosniev, A., &#38; Alpichshev,
    Z. (2025). Massive Dirac-Pauli physics in lead-halide perovskites. <i>Npj Quantum
    Materials</i>. Springer Nature. <a href="https://doi.org/10.1038/s41535-025-00754-7">https://doi.org/10.1038/s41535-025-00754-7</a>
  chicago: Shiva Kumar, Abhishek, Mikhail Maslov, Mikhail Lemeshko, Artem Volosniev,
    and Zhanybek Alpichshev. “Massive Dirac-Pauli Physics in Lead-Halide Perovskites.”
    <i>Npj Quantum Materials</i>. Springer Nature, 2025. <a href="https://doi.org/10.1038/s41535-025-00754-7">https://doi.org/10.1038/s41535-025-00754-7</a>.
  ieee: A. Shiva Kumar, M. Maslov, M. Lemeshko, A. Volosniev, and Z. Alpichshev, “Massive
    Dirac-Pauli physics in lead-halide perovskites,” <i>npj Quantum Materials</i>,
    vol. 10. Springer Nature, 2025.
  ista: Shiva Kumar A, Maslov M, Lemeshko M, Volosniev A, Alpichshev Z. 2025. Massive
    Dirac-Pauli physics in lead-halide perovskites. npj Quantum Materials. 10, 37.
  mla: Shiva Kumar, Abhishek, et al. “Massive Dirac-Pauli Physics in Lead-Halide Perovskites.”
    <i>Npj Quantum Materials</i>, vol. 10, 37, Springer Nature, 2025, doi:<a href="https://doi.org/10.1038/s41535-025-00754-7">10.1038/s41535-025-00754-7</a>.
  short: A. Shiva Kumar, M. Maslov, M. Lemeshko, A. Volosniev, Z. Alpichshev, Npj
    Quantum Materials 10 (2025).
corr_author: '1'
date_created: 2025-04-08T18:13:06Z
date_published: 2025-04-04T00:00:00Z
date_updated: 2026-05-06T13:06:08Z
day: '04'
ddc:
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doi: 10.1038/s41535-025-00754-7
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title: Massive Dirac-Pauli physics in lead-halide perovskites
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abstract:
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  text: "This thesis deals with several different models for complex quantum mechanical
    systems and is structured in three main parts. \r\n\t\r\nIn Part I, we study mean
    field random matrices as models for quantum Hamiltonians. Our focus lies on proving
    concentration estimates for resolvents of random matrices, so-called local laws,
    mostly in the setting of multiple resolvents. These estimates have profound consequences
    for eigenvector overlaps and thermalization problems. More concretely, we obtain,
    e.g., the optimal eigenstate thermalization hypothesis (ETH) uniformly in the
    spectrum for Wigner matrices, an optimal lower bound on non-Hermitian eigenvector
    overlaps, and prethermalization for deformed Wigner matrices.\tIn order to prove
    our novel multi-resolvent local laws, we develop and devise two main methods,
    the static Psi-method and the dynamical Zigzag strategy. \r\n\t\r\nIn Part II,
    we study Bardeen-Cooper-Schrieffer (BCS) theory, the standard mean field microscopic
    theory of superconductivity. We focus on asymptotic formulas for the characteristic
    critical temperature and energy gap of a superconductor and prove universality
    of their ratio in various physical regimes. Additionally, we investigate multi-band
    superconductors and show that inter-band coupling effects can only enhance the
    critical temperature. \r\n\t\r\nIn Part III, we study quantum lattice systems.
    On the one hand, we show a strong version of the local-perturbations-perturb-locally
    (LPPL) principle for the ground state of weakly interacting quantum spin systems
    with a uniform on-site gap. On the other hand, we introduce a notion of a local
    gap and rigorously justify response theory and the Kubo formula under the weakened
    assumption of a local gap. \r\n\t\r\nAdditionally, we discuss two classes of problems
    which do not fit into the three main parts of the thesis. These are deformational
    rigidity of Liouville metrics on the torus and relativistic toy models of particle
    creation via interior-boundary-conditions (IBCs).  "
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Sven Joscha
  full_name: Henheik, Sven Joscha
  id: 31d731d7-d235-11ea-ad11-b50331c8d7fb
  last_name: Henheik
  orcid: 0000-0003-1106-327X
citation:
  ama: 'Henheik SJ. Modeling complex quantum systems : Random matrices, BCS theory,
    and quantum lattice systems. 2025. doi:<a href="https://doi.org/10.15479/AT-ISTA-19540">10.15479/AT-ISTA-19540</a>'
  apa: 'Henheik, S. J. (2025). <i>Modeling complex quantum systems : Random matrices,
    BCS theory, and quantum lattice systems</i>. Institute of Science and Technology
    Austria. <a href="https://doi.org/10.15479/AT-ISTA-19540">https://doi.org/10.15479/AT-ISTA-19540</a>'
  chicago: 'Henheik, Sven Joscha. “Modeling Complex Quantum Systems : Random Matrices,
    BCS Theory, and Quantum Lattice Systems.” Institute of Science and Technology
    Austria, 2025. <a href="https://doi.org/10.15479/AT-ISTA-19540">https://doi.org/10.15479/AT-ISTA-19540</a>.'
  ieee: 'S. J. Henheik, “Modeling complex quantum systems : Random matrices, BCS theory,
    and quantum lattice systems,” Institute of Science and Technology Austria, 2025.'
  ista: 'Henheik SJ. 2025. Modeling complex quantum systems : Random matrices, BCS
    theory, and quantum lattice systems. Institute of Science and Technology Austria.'
  mla: 'Henheik, Sven Joscha. <i>Modeling Complex Quantum Systems : Random Matrices,
    BCS Theory, and Quantum Lattice Systems</i>. Institute of Science and Technology
    Austria, 2025, doi:<a href="https://doi.org/10.15479/AT-ISTA-19540">10.15479/AT-ISTA-19540</a>.'
  short: 'S.J. Henheik, Modeling Complex Quantum Systems : Random Matrices, BCS Theory,
    and Quantum Lattice Systems, Institute of Science and Technology Austria, 2025.'
corr_author: '1'
date_created: 2025-04-10T21:21:18Z
date_published: 2025-04-10T00:00:00Z
date_updated: 2026-04-07T12:37:12Z
day: '10'
ddc:
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doi: 10.15479/AT-ISTA-19540
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language:
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license: https://creativecommons.org/licenses/by/4.0/
month: '04'
oa: 1
oa_version: Published Version
page: '720'
project:
- _id: 62796744-2b32-11ec-9570-940b20777f1d
  call_identifier: H2020
  grant_number: '101020331'
  name: Random matrices beyond Wigner-Dyson-Mehta
publication_identifier:
  isbn:
  - 978-3-99078-057-2
  issn:
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publisher: Institute of Science and Technology Austria
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supervisor:
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
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  orcid: 0000-0001-5366-9603
title: 'Modeling complex quantum systems : Random matrices, BCS theory, and quantum
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type: dissertation
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...
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acknowledged_ssus:
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- _id: PreCl
- _id: ScienComp
acknowledgement: "The work presented in this doctoral thesis was performed at the
  Institute of Science\r\nand Technology (ISTA) and financially supported by a European
  Research Council\r\n(ERC) Consolidator Grant (PR1028ERC02), by SFARI (PR1028SIM02)
  and by the\r\nAustrian Science Fund (FWF) to Gaia Novarino (PE1028W1232). I am very
  thankful\r\nto the Doctoral Program “Molecular Drug Targets” (MolTag) for offering
  me financial\r\nsupport to perform essential experiments during my PhD studies and
  to participate in\r\ninternational conferences and courses."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Lena A
  full_name: Schwarz, Lena A
  id: 29A8453C-F248-11E8-B48F-1D18A9856A87
  last_name: Schwarz
citation:
  ama: Schwarz LA. Mapping developmental dynamics of autism spectrum disorder mouse
    models at single-cell resolution. 2025. doi:<a href="https://doi.org/10.15479/AT-ISTA-19557">10.15479/AT-ISTA-19557</a>
  apa: Schwarz, L. A. (2025). <i>Mapping developmental dynamics of autism spectrum
    disorder mouse models at single-cell resolution</i>. Institute of Science and
    Technology Austria. <a href="https://doi.org/10.15479/AT-ISTA-19557">https://doi.org/10.15479/AT-ISTA-19557</a>
  chicago: Schwarz, Lena A. “Mapping Developmental Dynamics of Autism Spectrum Disorder
    Mouse Models at Single-Cell Resolution.” Institute of Science and Technology Austria,
    2025. <a href="https://doi.org/10.15479/AT-ISTA-19557">https://doi.org/10.15479/AT-ISTA-19557</a>.
  ieee: L. A. Schwarz, “Mapping developmental dynamics of autism spectrum disorder
    mouse models at single-cell resolution,” Institute of Science and Technology Austria,
    2025.
  ista: Schwarz LA. 2025. Mapping developmental dynamics of autism spectrum disorder
    mouse models at single-cell resolution. Institute of Science and Technology Austria.
  mla: Schwarz, Lena A. <i>Mapping Developmental Dynamics of Autism Spectrum Disorder
    Mouse Models at Single-Cell Resolution</i>. Institute of Science and Technology
    Austria, 2025, doi:<a href="https://doi.org/10.15479/AT-ISTA-19557">10.15479/AT-ISTA-19557</a>.
  short: L.A. Schwarz, Mapping Developmental Dynamics of Autism Spectrum Disorder
    Mouse Models at Single-Cell Resolution, Institute of Science and Technology Austria,
    2025.
corr_author: '1'
date_created: 2025-04-14T06:59:06Z
date_published: 2025-04-14T00:00:00Z
date_updated: 2026-04-14T09:07:14Z
day: '14'
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  grant_number: '707964'
  name: Critical windows and reversibility of ASD associated with mutations in chromatin
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  grant_number: '101044865'
  name: Toward an understanding of the brain interstitial system and the extracellular
    proteome in health and autism spectrum disorders
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  full_name: Novarino, Gaia
  id: 3E57A680-F248-11E8-B48F-1D18A9856A87
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  orcid: 0000-0002-7673-7178
title: Mapping developmental dynamics of autism spectrum disorder mouse models at
  single-cell resolution
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abstract:
- lang: eng
  text: In this article, we propose a method for generating single microwave photons
    in superconducting circuits. We theoretically show that pure single microwave
    photons can be generated on demand and tuned over a large frequency band by making
    use of Landau-Zener transitions under a rapid sweep of a control parameter. We
    devise a protocol that enables fast control of the frequency of the emitted photon
    over two octaves, without requiring extensive calibration. Additionally, we make
    theoretical estimates of the generation efficiency, tunability, purity, and linewidth
    of the photons emitted using this method for both charge- and flux-qubit-based
    architectures. We also provide estimates of the optimal device parameters required
    for these architectures to realize the device.
acknowledgement: The authors acknowledge the support of DST-INSPIRE Fellowship No.
  IF180339 and DST-SERB Core Research Grant No. CRG/2018/002129. S.H. acknowledges
  the support of the Kishore Vaigyanik Protsahan Yojana (KVPY). S.H. also acknowledges
  helpful discussions with Harsh Arora and Johannes Fink.
article_number: '044042'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Samarth
  full_name: Hawaldar, Samarth
  id: 221708e1-1ff6-11ee-9fa6-85146607433e
  last_name: Hawaldar
  orcid: 0000-0002-1965-4309
- first_name: Siddhi Satish
  full_name: Khaire, Siddhi Satish
  last_name: Khaire
- first_name: Per
  full_name: Delsing, Per
  last_name: Delsing
- first_name: Baladitya
  full_name: Suri, Baladitya
  last_name: Suri
citation:
  ama: Hawaldar S, Khaire SS, Delsing P, Suri B. On-demand single-microwave-photon
    source in a superconducting circuit with wideband frequency tunability. <i>Physical
    Review Applied</i>. 2025;23(4). doi:<a href="https://doi.org/10.1103/physrevapplied.23.044042">10.1103/physrevapplied.23.044042</a>
  apa: Hawaldar, S., Khaire, S. S., Delsing, P., &#38; Suri, B. (2025). On-demand
    single-microwave-photon source in a superconducting circuit with wideband frequency
    tunability. <i>Physical Review Applied</i>. American Physical Society. <a href="https://doi.org/10.1103/physrevapplied.23.044042">https://doi.org/10.1103/physrevapplied.23.044042</a>
  chicago: Hawaldar, Samarth, Siddhi Satish Khaire, Per Delsing, and Baladitya Suri.
    “On-Demand Single-Microwave-Photon Source in a Superconducting Circuit with Wideband
    Frequency Tunability.” <i>Physical Review Applied</i>. American Physical Society,
    2025. <a href="https://doi.org/10.1103/physrevapplied.23.044042">https://doi.org/10.1103/physrevapplied.23.044042</a>.
  ieee: S. Hawaldar, S. S. Khaire, P. Delsing, and B. Suri, “On-demand single-microwave-photon
    source in a superconducting circuit with wideband frequency tunability,” <i>Physical
    Review Applied</i>, vol. 23, no. 4. American Physical Society, 2025.
  ista: Hawaldar S, Khaire SS, Delsing P, Suri B. 2025. On-demand single-microwave-photon
    source in a superconducting circuit with wideband frequency tunability. Physical
    Review Applied. 23(4), 044042.
  mla: Hawaldar, Samarth, et al. “On-Demand Single-Microwave-Photon Source in a Superconducting
    Circuit with Wideband Frequency Tunability.” <i>Physical Review Applied</i>, vol.
    23, no. 4, 044042, American Physical Society, 2025, doi:<a href="https://doi.org/10.1103/physrevapplied.23.044042">10.1103/physrevapplied.23.044042</a>.
  short: S. Hawaldar, S.S. Khaire, P. Delsing, B. Suri, Physical Review Applied 23
    (2025).
corr_author: '1'
date_created: 2025-04-24T06:34:07Z
date_published: 2025-04-18T00:00:00Z
date_updated: 2025-09-30T12:17:33Z
day: '18'
ddc:
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doi: 10.1103/physrevapplied.23.044042
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publication: Physical Review Applied
publication_identifier:
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publisher: American Physical Society
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title: On-demand single-microwave-photon source in a superconducting circuit with
  wideband frequency tunability
tmp:
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  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
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  short: CC BY (4.0)
type: journal_article
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volume: 23
year: '2025'
...
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abstract:
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  text: In this paper we obtain a complete description of all indecomposable characters
    (central positive-definite functions) of inductive limits of the symmetric groups
    under block diagonal embedding. As a corollary we obtain the full classification
    of the isomorphism classes of these inductive limits.
acknowledgement: The authors were partially supported by the “Long-term program of
  support of the Ukrainian research teams at the Polish Academy of Sciences carried
  out in collaboration with the U.S. National Academy of Sciences with the financial
  support of external partners”. The second author was also supported by the Austrian
  Science Fund (FWF) grant “Geometry of the tip of the global nilpotent cone” no.
  10.55776/P35847
article_processing_charge: Yes (in subscription journal)
article_type: original
arxiv: 1
author:
- first_name: Nikolay
  full_name: Nessonov, Nikolay
  last_name: Nessonov
- first_name: Nhok T
  full_name: Ngo, Nhok T
  id: 28e53c8c-896a-11ed-bdf8-f809043ce2f0
  last_name: Ngo
citation:
  ama: Nessonov N, Ngo NT. Indecomposable characters of inductive limits of symmetric
    groups. <i>Representation Theory</i>. 2025;29(8):256-288. doi:<a href="https://doi.org/10.1090/ert/689">10.1090/ert/689</a>
  apa: Nessonov, N., &#38; Ngo, N. T. (2025). Indecomposable characters of inductive
    limits of symmetric groups. <i>Representation Theory</i>. American Mathematical
    Society. <a href="https://doi.org/10.1090/ert/689">https://doi.org/10.1090/ert/689</a>
  chicago: Nessonov, Nikolay, and Nhok T Ngo. “Indecomposable Characters of Inductive
    Limits of Symmetric Groups.” <i>Representation Theory</i>. American Mathematical
    Society, 2025. <a href="https://doi.org/10.1090/ert/689">https://doi.org/10.1090/ert/689</a>.
  ieee: N. Nessonov and N. T. Ngo, “Indecomposable characters of inductive limits
    of symmetric groups,” <i>Representation Theory</i>, vol. 29, no. 8. American Mathematical
    Society, pp. 256–288, 2025.
  ista: Nessonov N, Ngo NT. 2025. Indecomposable characters of inductive limits of
    symmetric groups. Representation Theory. 29(8), 256–288.
  mla: Nessonov, Nikolay, and Nhok T. Ngo. “Indecomposable Characters of Inductive
    Limits of Symmetric Groups.” <i>Representation Theory</i>, vol. 29, no. 8, American
    Mathematical Society, 2025, pp. 256–88, doi:<a href="https://doi.org/10.1090/ert/689">10.1090/ert/689</a>.
  short: N. Nessonov, N.T. Ngo, Representation Theory 29 (2025) 256–288.
corr_author: '1'
date_created: 2025-04-24T08:48:05Z
date_published: 2025-04-10T00:00:00Z
date_updated: 2025-05-05T06:59:07Z
day: '10'
ddc:
- '510'
department:
- _id: GradSch
- _id: TaHa
doi: 10.1090/ert/689
external_id:
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  - '2206.01964'
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month: '04'
oa: 1
oa_version: Published Version
page: 256-288
project:
- _id: 34b2c9cb-11ca-11ed-8bc3-a50ba74ca4a3
  grant_number: P35847
  name: Geometry of the tip of the global nilpotent cone
publication: Representation Theory
publication_identifier:
  issn:
  - 1088-4165
publication_status: published
publisher: American Mathematical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Indecomposable characters of inductive limits of symmetric groups
tmp:
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abstract:
- lang: eng
  text: "This thesis consists of three chapters, each corresponding to one publication.
    While each of these projects tackles a topic in a different area of research,
    they all share a common thread in the type of topological structure they handle
    - a partition of space into volumes separated by interfaces that meet in non-manifold
    junctions.\r\n\r\nIn Chapter 2, we study clusters of soap bubbles from a simulation
    perspective. In particular, we develop a surface-only algorithm that couples large
    scale motion and shape deformation of soap bubble clusters with the small scale
    evolution of the thin film's thickness, which is responsible for visual phenomena
    like surface vortices, Newton's interference patterns, capillary waves, and deformation-dependent
    rupturing of films in a foam. We model film thickness as a reduced degree of freedom
    in the Navier-Stokes equations and from them derive three sets of equations governing
    normal and tangential motion of the soap film surface, as well as the evolution
    of the thin film thickness. We discretize these equations on a non-manifold triangle
    mesh, extending and adapting operators to handle complex topology. We also present
    an incompressible fluid solver for 2.5D films and an advection algorithm for convecting
    fields across non-manifold surface junctions. Our simulations enhance bubble solvers
    with additional effects caused by convection, rippling, draining, and evaporation
    of the thin film.\r\n\r\nIn Chapter 3, we introduce a multi-material non-manifold
    mesh-based surface tracking algorithm that converts mesh defects, such as overlaps,
    self-intersections, and inversions into topological changes. Our algorithm generalizes
    prior work on manifold surface tracking with topological changes: it preserves
    surface features like mesh-based methods, and it robustly handles topological
    changes like level set methods. Our method also offers improved efficiency and
    robustness over the state of the art. We demonstrate the effectiveness of the
    approach on a range of examples, including complex soap film simulations, such
    as those presented in Chapter 2, but with an order of magnitude more interacting
    bubbles than what we could achieve before, and Boolean unions of non-manifold
    meshes consisting of millions of triangles.\r\n\r\nLastly, in Chapter 4, we utilize
    developments in the theory of random geometric complexes facilitated by observations
    from Discrete Morse theory. We survey the methods and results obtained with this
    new approach, and discuss some of its shortcomings. We use simulations to illustrate
    the results and to form conjectures, getting numerical estimates for combinatorial,
    topological, and geometric properties of weighted and unweighted Delaunay mosaics,
    their dual Voronoi tessellations, and the Alpha and Wrap complexes contained in
    the mosaics."
acknowledged_ssus:
- _id: ScienComp
acknowledgement: The project in Chapter 2 has received funding from the European Research
  Council (ERC) under the European Union's Horizon 2020 research and innovation programme
  under grant agreement No. 638176. The project in Chapter 3 was funded in part by
  the European Union (ERC-2021-COG 101045083 CoDiNA). The project in Chapter 4 has
  received funding from the European Research Council (ERC) under the European Union's
  Horizon 2020 research and innovation programme (grant agreements No 78818 Alpha
  and No 638176). It was also partially supported by the DFG Collaborative Research
  Center TRR 109, 'Discretization in Geometry and Dynamics', through grant no. I02979-N35
  of the Austrian Science Fund (FWF). Thank you for providing funds to support my
  work.
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Peter
  full_name: Synak, Peter
  id: 331776E2-F248-11E8-B48F-1D18A9856A87
  last_name: Synak
citation:
  ama: Synak P. Methods for fluid simulation, surface tracking, and statistics of
    non-manifold structures. 2025. doi:<a href="https://doi.org/10.15479/AT-ISTA-19630">10.15479/AT-ISTA-19630</a>
  apa: Synak, P. (2025). <i>Methods for fluid simulation, surface tracking, and statistics
    of non-manifold structures</i>. Institute of Science and Technology Austria. <a
    href="https://doi.org/10.15479/AT-ISTA-19630">https://doi.org/10.15479/AT-ISTA-19630</a>
  chicago: Synak, Peter. “Methods for Fluid Simulation, Surface Tracking, and Statistics
    of Non-Manifold Structures.” Institute of Science and Technology Austria, 2025.
    <a href="https://doi.org/10.15479/AT-ISTA-19630">https://doi.org/10.15479/AT-ISTA-19630</a>.
  ieee: P. Synak, “Methods for fluid simulation, surface tracking, and statistics
    of non-manifold structures,” Institute of Science and Technology Austria, 2025.
  ista: Synak P. 2025. Methods for fluid simulation, surface tracking, and statistics
    of non-manifold structures. Institute of Science and Technology Austria.
  mla: Synak, Peter. <i>Methods for Fluid Simulation, Surface Tracking, and Statistics
    of Non-Manifold Structures</i>. Institute of Science and Technology Austria, 2025,
    doi:<a href="https://doi.org/10.15479/AT-ISTA-19630">10.15479/AT-ISTA-19630</a>.
  short: P. Synak, Methods for Fluid Simulation, Surface Tracking, and Statistics
    of Non-Manifold Structures, Institute of Science and Technology Austria, 2025.
corr_author: '1'
date_created: 2025-04-29T09:39:34Z
date_published: 2025-04-29T00:00:00Z
date_updated: 2026-04-16T08:29:34Z
day: '29'
ddc:
- '519'
- '006'
degree_awarded: PhD
department:
- _id: ChWo
- _id: GradSch
doi: 10.15479/AT-ISTA-19630
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oa: 1
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page: '106'
project:
- _id: 2533E772-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '638176'
  name: 'Big Splash: Efficient Simulation of Natural Phenomena at Extremely Large
    Scales'
- _id: 34bc2376-11ca-11ed-8bc3-9a3b3961a088
  grant_number: '101045083'
  name: Computational Discovery of Numerical Algorithms for Animation and Simulation
    of Natural Phenomena
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 2533E772-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '638176'
  name: 'Big Splash: Efficient Simulation of Natural Phenomena at Extremely Large
    Scales'
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
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status: public
supervisor:
- first_name: Christopher J
  full_name: Wojtan, Christopher J
  id: 3C61F1D2-F248-11E8-B48F-1D18A9856A87
  last_name: Wojtan
  orcid: 0000-0001-6646-5546
title: Methods for fluid simulation, surface tracking, and statistics of non-manifold
  structures
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2025'
...
---
OA_place: publisher
_id: '19684'
abstract:
- lang: eng
  text: "The overarching goal of this thesis is to break down the complexity of turbulent
    flows in terms of enumerable, coherent structures and patterns. In a five-paper
    series, we adopt a variety of perspectives and techniques to relate the properties
    of systems of increasing complexity to their underlying coherent structures. \r\n\r\nInitially,
    we take a dynamical systems point of view, seeing turbulent flow as a chaotic
    trajectory bouncing between exact unstable solutions of the underlying equations
    of motion. Using persistent homology, the main tool of topological data analysis
    capturing the persistence across scales of topological features in a point cloud,
    we introduce a method that quantifies visits of turbulent trajectories to unstable
    time-periodic solutions, also called periodic orbits. We demonstrate this method
    first in the Rössler and Kuramoto–Sivashinsky systems. Using this method in 3D
    Kolmogorov flow, we extract a Markov chain from turbulent data, where each node
    corresponds to the neighbourhood of a periodic orbit. The invariant distribution
    of this Markov chain reproduces expectation values on turbulent data when it is
    used to weight averages on the respective periodic orbits.\r\n\r\nIn more realistic,
    wall-bounded settings, such as plane-Couette flow (pcf) driven by the relative
    motion of the walls, or plane-Poiseuille flow (ppf) driven by a pressure gradient,
    finding exact solutions is difficult. We use dynamic mode decomposition (DMD),
    a dimensionality reduction method for sequential data, to identify and approximate
    low-dimensional dynamics without knowing any exact solutions. Most spatially-extended
    systems are equivariant under translations, and in such cases spatial drifts dominate
    DMD, hindering its use in the search for and modelling of low-dimensional dynamics.
    We augment DMD with a symmetry reduction method trained on turbulent data to stop
    it from seeing translations as a feature, improving its ability to extract dynamical
    information in translation-equivariant systems. We find segments of turbulent
    trajectories that linearize well with their symmetry-reduced DMD spectra, akin
    to dynamics near exact solutions. Searching for harmonics in the spectra gives
    leads for periodic orbits with spatial drifts, one of which converges to a new
    solution.\r\n\r\nIn larger domains, turbulence can localize and coexist with surrounding
    laminar flow. Our preceding approaches are global, taking all of a domain into
    account at once, and cannot readily treat each localized patch individually. Working
    first in a minimal oblique domain that can host a single 1D-localized turbulent
    patch, we find that turbulence in ppf is connected to a stable periodic orbit
    at a flow velocity much lower than when turbulence is first onset. We show that,
    well in advance of sustained turbulence, chaos sets in explosively, and for long
    time horizons, time series are consistent with that of a random process.\r\n\r\nFinally,
    in much larger domains, we study and compare 2D-localized turbulence that appears
    as large-scale inclined structures, called stripes, in ppf and pcf. While appearing
    similar, we find that stripes in these two settings differ significantly in terms
    of how they sustain themselves, and in higher velocities, how they proliferate."
acknowledged_ssus:
- _id: ScienComp
acknowledgement: "The work in this thesis was supported by a grant from the Simons
  Foundation (662960, BH).\r\n"
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Gökhan
  full_name: Yalniz, Gökhan
  id: 66E74FA2-D8BF-11E9-8249-8DE2E5697425
  last_name: Yalniz
  orcid: 0000-0002-8490-9312
citation:
  ama: 'Yalniz G. Transition to turbulence : Data-, solution-, and pattern-driven
    approaches. 2025. doi:<a href="https://doi.org/10.15479/AT-ISTA-19684">10.15479/AT-ISTA-19684</a>'
  apa: 'Yalniz, G. (2025). <i>Transition to turbulence : Data-, solution-, and pattern-driven
    approaches</i>. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT-ISTA-19684">https://doi.org/10.15479/AT-ISTA-19684</a>'
  chicago: 'Yalniz, Gökhan. “Transition to Turbulence : Data-, Solution-, and Pattern-Driven
    Approaches.” Institute of Science and Technology Austria, 2025. <a href="https://doi.org/10.15479/AT-ISTA-19684">https://doi.org/10.15479/AT-ISTA-19684</a>.'
  ieee: 'G. Yalniz, “Transition to turbulence : Data-, solution-, and pattern-driven
    approaches,” Institute of Science and Technology Austria, 2025.'
  ista: 'Yalniz G. 2025. Transition to turbulence : Data-, solution-, and pattern-driven
    approaches. Institute of Science and Technology Austria.'
  mla: 'Yalniz, Gökhan. <i>Transition to Turbulence : Data-, Solution-, and Pattern-Driven
    Approaches</i>. Institute of Science and Technology Austria, 2025, doi:<a href="https://doi.org/10.15479/AT-ISTA-19684">10.15479/AT-ISTA-19684</a>.'
  short: 'G. Yalniz, Transition to Turbulence : Data-, Solution-, and Pattern-Driven
    Approaches, Institute of Science and Technology Austria, 2025.'
corr_author: '1'
date_created: 2025-05-12T15:12:28Z
date_published: 2025-05-13T00:00:00Z
date_updated: 2026-06-18T19:23:35Z
day: '13'
ddc:
- '514'
- '519'
- '532'
- '004'
degree_awarded: PhD
department:
- _id: GradSch
- _id: BjHo
doi: 10.15479/AT-ISTA-19684
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  creator: gyalniz
  date_created: 2025-05-12T15:15:59Z
  date_updated: 2025-05-12T15:43:28Z
  description: '3D visualizations of the turbulent flow (left) and the periodic orbits
    (middle) that are being shadowed along with the local state space projections
    (right) onto the principal components of the respective periodic orbit. Shown
    here are the isosurfaces of velocity (red/blue: ±95% of the instantaneous maximum)
    and vorticity (purple/green: ±65% of the instantaneous maximum) in the x-direction.
    Markers along the projections are in sync with the 3D visualizations. The movie
    corresponds to the initial time interval (up to t = 100) of figure 2.2 (a,b);
    periodic orbits and the state space projections are shown only through the shadowing
    events indicated in figure 2.2 (b).'
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  date_updated: 2025-05-12T15:43:28Z
  description: 'Turbulent flow (left) in HKW domain and its symmetry reduction (right).
    Shown here are the isosurfaces of streamwise velocity (red/blue: u = 0.5 max/min
    u) and streamwise vorticity (green/purple: ω_x = 0.5 max/min ω_x).'
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  creator: gyalniz
  date_created: 2025-05-12T15:16:21Z
  date_updated: 2025-05-12T15:43:28Z
  description: 'Turbulent flow (left) in P2K domain and its symmetry reduction (right).
    Shown here are the isosurfaces of streamwise velocity (red/blue: u = 0.5 max/min
    u) and streamwise vorticity (green/purple: ω_x = 0.5 max/min ω_x).'
  file_id: '19688'
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  date_created: 2025-05-12T15:16:36Z
  date_updated: 2025-05-12T15:43:28Z
  description: 'Relative periodic orbit RPO_79.4 (left) of the plane-Couette flow
    (HKW domain) and its symmetry reduction (right). Shown here are the isosurfaces
    of streamwise velocity (red/blue: u = 0.5 max/min u) and streamwise vorticity
    (green/purple: ω_x = 0.5 max/min ω_x).'
  file_id: '19689'
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  creator: gyalniz
  date_created: 2025-05-12T15:16:50Z
  date_updated: 2025-05-12T15:43:28Z
  description: 'Symmetry-reduced flow (left), its SRDMD approximation (middle), and
    state space projection (right) showing the spiral-out episode in P2K domain (figure
    3.6 (b) and figure 3.8 (b)). Shown here are the isosurfaces of streamwise velocity
    (red/blue: u = 0.5 max/min u) and streamwise vorticity (green/purple: ω_x = 0.5
    max/min ω_x).'
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  description: Movie demonstrating the quasi-steady Reynolds number descent from turbulence
    to a periodic orbit.
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  description: Streamwise velocity fluctuations (from laminar) of plane-Couette flow
    (Re^C =335) at the y = 0 wall-normal plane in coordinates stationary with respect
    to the bulk velocity. Here, x is the streamwise direction (the wall at y = 1 moves
    to the right) and z is the spanwise direction. Time is in advectime time units.
    Shown is the full (L_x = L_z = 400) domain.
  file_id: '19692'
  file_name: Movie 5A.1.mp4
  file_size: 5893993
  relation: supplementary_material
  title: Chapter 5 - Movie 5A.1
- access_level: open_access
  checksum: fd17eabb70129ceaa414e40924d1d2fe
  content_type: video/mp4
  creator: gyalniz
  date_created: 2025-05-12T15:17:49Z
  date_updated: 2025-05-12T15:43:28Z
  description: Streamwise velocity fluctuations (from laminar) of plane-Poiseuille
    flow (Re^P =660) at the y = 0.5 wall-normal plane in coordinates stationary with
    respect to the bulk velocity. Here, x is the streamwise direction (the mean negative
    pressure gradient is to the right) and z is the spanwise direction. Time is in
    advectime time units. Shown is the full (L_x = L_z = 400) domain.
  file_id: '19693'
  file_name: Movie 5A.2.mp4
  file_size: 3990352
  relation: supplementary_material
  title: Chapter 5 - Movie 5A.2
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  checksum: 32f904497ab0bbee38f0788d96b91454
  content_type: video/mp4
  creator: gyalniz
  date_created: 2025-05-12T15:17:58Z
  date_updated: 2025-05-12T15:43:28Z
  description: Streamwise velocity fluctuations (from laminar) of plane-Poiseuille
    flow (Re^P=660) at the y = 0.5 wall-normal plane in coordinates stationary with
    respect to the average velocity of the downstream tip of the stripe. Here, x is
    the streamwise direction (the mean negative pressure gradient is to the right)
    and z is the spanwise direction. Time is in advectime time units. Shown is a zoom-in
    of the full (L_x = L_z) domain.
  file_id: '19694'
  file_name: Movie 5A.3.mp4
  file_size: 5171009
  relation: supplementary_material
  title: Chapter 5 - Movie 5A.3
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  checksum: f313261b9bb12dfb943fead8318954c6
  content_type: application/x-zip-compressed
  creator: gyalniz
  date_created: 2025-05-12T15:27:10Z
  date_updated: 2025-05-12T15:43:28Z
  file_id: '19695'
  file_name: Gökhan Yalnız - PhD thesis.zip
  file_size: 18991996
  relation: source_file
file_date_updated: 2025-05-12T15:43:28Z
has_accepted_license: '1'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: '155'
project:
- _id: 238598C6-32DE-11EA-91FC-C7463DDC885E
  grant_number: '662960'
  name: Revisiting the Turbulence Problem Using Statistical Mechanics
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '9558'
    relation: part_of_dissertation
    status: public
  - id: '12105'
    relation: part_of_dissertation
    status: public
  - id: '13274'
    relation: part_of_dissertation
    status: public
  - id: '14466'
    relation: part_of_dissertation
    status: public
  - id: '7563'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
title: 'Transition to turbulence : Data-, solution-, and pattern-driven approaches'
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '19702'
abstract:
- lang: eng
  text: Moran Birth-death process is a standard stochastic process that is used to
    model natural selection in spatially structured populations. A newly occurring
    mutation that invades a population of residents can either fixate on the whole
    population or it can go extinct due to random drift. The duration of the process
    depends not only on the total population size n, but also on the spatial structure
    of the population. In this work, we consider the Moran process with a single type
    of individuals who invade and colonize an otherwise empty environment. Mathematically,
    this corresponds to the setting where the residents have zero reproduction rate,
    thus they never reproduce. The spatial structure is represented by a graph. We
    present two main contributions. First, in contrast to the Moran process in which
    residents do reproduce, we show that the colonization time is always at most a
    polynomial function of the population size n. Namely, we show that colonization
    always takes at most 1/2n^3 - 1/2n^2 expected steps, and for each n, we identify
    the slowest graph where it takes exactly that many steps. Moreover, we establish
    a stronger bound of roughly n^2.5 steps for undirected graphs and an even stronger
    bound of roughly n^2 steps for so-called regular graphs. Second, we discuss various
    complications that one faces when attempting to measure fixation times and colonization
    times in spatially structured populations, and we propose to measure the real
    duration of the process, rather than counting the steps of the classic Moran process.
article_processing_charge: Yes
article_type: original
arxiv: 1
author:
- first_name: Lenka
  full_name: Kopfová, Lenka
  id: 17691681-50b9-11ef-ad56-edf4cacb21b0
  last_name: Kopfová
- first_name: Josef
  full_name: Tkadlec, Josef
  id: 3F24CCC8-F248-11E8-B48F-1D18A9856A87
  last_name: Tkadlec
  orcid: 0000-0002-1097-9684
citation:
  ama: Kopfová L, Tkadlec J. Colonization times in Moran process on graphs. <i>PLoS
    computational biology</i>. 2025;21(5):e1012868. doi:<a href="https://doi.org/10.1371/journal.pcbi.1012868">10.1371/journal.pcbi.1012868</a>
  apa: Kopfová, L., &#38; Tkadlec, J. (2025). Colonization times in Moran process
    on graphs. <i>PLoS Computational Biology</i>. Public Library of Science. <a href="https://doi.org/10.1371/journal.pcbi.1012868">https://doi.org/10.1371/journal.pcbi.1012868</a>
  chicago: Kopfová, Lenka, and Josef Tkadlec. “Colonization Times in Moran Process
    on Graphs.” <i>PLoS Computational Biology</i>. Public Library of Science, 2025.
    <a href="https://doi.org/10.1371/journal.pcbi.1012868">https://doi.org/10.1371/journal.pcbi.1012868</a>.
  ieee: L. Kopfová and J. Tkadlec, “Colonization times in Moran process on graphs,”
    <i>PLoS computational biology</i>, vol. 21, no. 5. Public Library of Science,
    p. e1012868, 2025.
  ista: Kopfová L, Tkadlec J. 2025. Colonization times in Moran process on graphs.
    PLoS computational biology. 21(5), e1012868.
  mla: Kopfová, Lenka, and Josef Tkadlec. “Colonization Times in Moran Process on
    Graphs.” <i>PLoS Computational Biology</i>, vol. 21, no. 5, Public Library of
    Science, 2025, p. e1012868, doi:<a href="https://doi.org/10.1371/journal.pcbi.1012868">10.1371/journal.pcbi.1012868</a>.
  short: L. Kopfová, J. Tkadlec, PLoS Computational Biology 21 (2025) e1012868.
date_created: 2025-05-18T22:02:50Z
date_published: 2025-05-01T00:00:00Z
date_updated: 2025-09-30T12:34:03Z
day: '01'
ddc:
- '000'
department:
- _id: GradSch
doi: 10.1371/journal.pcbi.1012868
external_id:
  arxiv:
  - '2410.09476'
  isi:
  - '001481670600002'
file:
- access_level: open_access
  checksum: 73e35151eebd5064972c5a07ffdf2b69
  content_type: application/pdf
  creator: dernst
  date_created: 2025-05-19T07:45:31Z
  date_updated: 2025-05-19T07:45:31Z
  file_id: '19709'
  file_name: 2025_PloSCompBio_Kopfova.pdf
  file_size: 6805943
  relation: main_file
  success: 1
file_date_updated: 2025-05-19T07:45:31Z
has_accepted_license: '1'
intvolume: '        21'
isi: 1
issue: '5'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: e1012868
publication: PLoS computational biology
publication_identifier:
  eissn:
  - 1553-7358
publication_status: published
publisher: Public Library of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Colonization times in Moran process on graphs
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 21
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
PlanS_conform: '1'
_id: '19704'
abstract:
- lang: eng
  text: The information-processing capability of the brain’s cellular network depends
    on the physical wiring pattern between neurons and their molecular and functional
    characteristics. Mapping neurons and resolving their individual synaptic connections
    can be achieved by volumetric imaging at nanoscale resolution1,2 with dense cellular
    labelling. Light microscopy is uniquely positioned to visualize specific molecules,
    but dense, synapse-level circuit reconstruction by light microscopy has been out
    of reach, owing to limitations in resolution, contrast and volumetric imaging
    capability. Here we describe light-microscopy-based connectomics (LICONN). We
    integrated specifically engineered hydrogel embedding and expansion with comprehensive
    deep-learning-based segmentation and analysis of connectivity, thereby directly
    incorporating molecular information into synapse-level reconstructions of brain
    tissue. LICONN will allow synapse-level phenotyping of brain tissue in biological
    experiments in a readily adoptable manner.
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
- _id: ScienComp
- _id: PreCl
- _id: M-Shop
- _id: E-Lib
acknowledgement: 'We thank S. Dorkenwald and P. Li for critical reading of the manuscript,
  S. Loomba for discussions and E. Miguel for support with data handling. We acknowledge
  support from ISTA’s scientific service units: Imaging and Optics, Lab Support, Scientific
  Computing, the preclinical facility, the Miba Machine Shop and the library. We acknowledge
  funding from the following sources: Austrian Science Fund (FWF) grant DK W1232 (J.G.D.
  and M.R.T.); Austrian Academy of Sciences DOC fellowship 26137 (M.R.T.); Gesellschaft
  für Forschungsförderung NÖ (NFB) grant LSC18-022 (J.G.D.); the European Union’s
  Horizon 2020 research and innovation programme and Marie Skłodowska-Curie Actions
  Fellowship 665385 (J.L.); and the European Union’s Horizon 2020 research and innovation
  programme and European Research Council (ERC) grant 101044865 ‘SecretAutism’ (G.N.).Open
  access funding provided by Institute of Science and Technology (IST Austria).'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Mojtaba
  full_name: Tavakoli, Mojtaba
  id: 3A0A06F4-F248-11E8-B48F-1D18A9856A87
  last_name: Tavakoli
  orcid: 0000-0002-7667-6854
- first_name: Julia
  full_name: Lyudchik, Julia
  id: 46E28B80-F248-11E8-B48F-1D18A9856A87
  last_name: Lyudchik
- first_name: Michał
  full_name: Januszewski, Michał
  last_name: Januszewski
- first_name: Vitali
  full_name: Vistunou, Vitali
  id: 7e146587-8972-11ed-ae7b-d7a32ea86a81
  last_name: Vistunou
- first_name: Nathalie
  full_name: Agudelo Duenas, Nathalie
  id: 40E7F008-F248-11E8-B48F-1D18A9856A87
  last_name: Agudelo Duenas
- first_name: Jakob
  full_name: Vorlaufer, Jakob
  id: 937696FA-C996-11E9-8C7C-CF13E6697425
  last_name: Vorlaufer
  orcid: 0009-0000-7590-3501
- first_name: Christoph M
  full_name: Sommer, Christoph M
  id: 4DF26D8C-F248-11E8-B48F-1D18A9856A87
  last_name: Sommer
  orcid: 0000-0003-1216-9105
- first_name: Caroline
  full_name: Kreuzinger, Caroline
  id: 382077BA-F248-11E8-B48F-1D18A9856A87
  last_name: Kreuzinger
- first_name: Bárbara
  full_name: Oliveira, Bárbara
  id: 3B03AA1A-F248-11E8-B48F-1D18A9856A87
  last_name: Oliveira
- first_name: Alban
  full_name: Cenameri, Alban
  id: 9ac8f577-2357-11eb-997a-e566c5550886
  last_name: Cenameri
- first_name: Gaia
  full_name: Novarino, Gaia
  id: 3E57A680-F248-11E8-B48F-1D18A9856A87
  last_name: Novarino
  orcid: 0000-0002-7673-7178
- first_name: Viren
  full_name: Jain, Viren
  last_name: Jain
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
citation:
  ama: Tavakoli M, Lyudchik J, Januszewski M, et al. Light-microscopy-based connectomic
    reconstruction of mammalian brain tissue. <i>Nature</i>. 2025;642:398-410. doi:<a
    href="https://doi.org/10.1038/s41586-025-08985-1">10.1038/s41586-025-08985-1</a>
  apa: Tavakoli, M., Lyudchik, J., Januszewski, M., Vistunou, V., Agudelo Duenas,
    N., Vorlaufer, J., … Danzl, J. G. (2025). Light-microscopy-based connectomic reconstruction
    of mammalian brain tissue. <i>Nature</i>. Springer Nature. <a href="https://doi.org/10.1038/s41586-025-08985-1">https://doi.org/10.1038/s41586-025-08985-1</a>
  chicago: Tavakoli, Mojtaba, Julia Lyudchik, Michał Januszewski, Vitali Vistunou,
    Nathalie Agudelo Duenas, Jakob Vorlaufer, Christoph M Sommer, et al. “Light-Microscopy-Based
    Connectomic Reconstruction of Mammalian Brain Tissue.” <i>Nature</i>. Springer
    Nature, 2025. <a href="https://doi.org/10.1038/s41586-025-08985-1">https://doi.org/10.1038/s41586-025-08985-1</a>.
  ieee: M. Tavakoli <i>et al.</i>, “Light-microscopy-based connectomic reconstruction
    of mammalian brain tissue,” <i>Nature</i>, vol. 642. Springer Nature, pp. 398–410,
    2025.
  ista: Tavakoli M, Lyudchik J, Januszewski M, Vistunou V, Agudelo Duenas N, Vorlaufer
    J, Sommer CM, Kreuzinger C, Oliveira B, Cenameri A, Novarino G, Jain V, Danzl
    JG. 2025. Light-microscopy-based connectomic reconstruction of mammalian brain
    tissue. Nature. 642, 398–410.
  mla: Tavakoli, Mojtaba, et al. “Light-Microscopy-Based Connectomic Reconstruction
    of Mammalian Brain Tissue.” <i>Nature</i>, vol. 642, Springer Nature, 2025, pp.
    398–410, doi:<a href="https://doi.org/10.1038/s41586-025-08985-1">10.1038/s41586-025-08985-1</a>.
  short: M. Tavakoli, J. Lyudchik, M. Januszewski, V. Vistunou, N. Agudelo Duenas,
    J. Vorlaufer, C.M. Sommer, C. Kreuzinger, B. Oliveira, A. Cenameri, G. Novarino,
    V. Jain, J.G. Danzl, Nature 642 (2025) 398–410.
corr_author: '1'
date_created: 2025-05-18T22:02:51Z
date_published: 2025-06-12T00:00:00Z
date_updated: 2026-04-28T13:33:34Z
day: '12'
ddc:
- '570'
department:
- _id: JoDa
- _id: GradSch
- _id: Bio
- _id: GaNo
doi: 10.1038/s41586-025-08985-1
ec_funded: 1
external_id:
  isi:
  - '001483477000001'
  pmid:
  - '40335689'
file:
- access_level: open_access
  checksum: ebc99d7108e728f46db0a009292675ef
  content_type: application/pdf
  creator: dernst
  date_created: 2025-07-03T06:55:20Z
  date_updated: 2025-07-03T06:55:20Z
  file_id: '19959'
  file_name: 2025_Nature_Tavakoli.pdf
  file_size: 133201290
  relation: main_file
  success: 1
file_date_updated: 2025-07-03T06:55:20Z
has_accepted_license: '1'
intvolume: '       642'
isi: 1
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 398-410
pmid: 1
project:
- _id: 6285a163-2b32-11ec-9570-8e204ca2dba5
  grant_number: '26137'
  name: Studying Organelle Structure and Function at Nanoscale Resolution with Expansion
    Microscopy
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
- _id: 34ba8964-11ca-11ed-8bc3-e15864e7e9a6
  grant_number: '101044865'
  name: Toward an understanding of the brain interstitial system and the extracellular
    proteome in health and autism spectrum disorders
- _id: 26AA4EF2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: W1232-B24
  name: Molecular Drug Targets
publication: Nature
publication_identifier:
  eissn:
  - 1476-4687
  issn:
  - 0028-0836
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - description: News on ISTA website
    relation: press_release
    url: https://ista.ac.at/en/news/piecing-together-the-brain-puzzle/
  record:
  - id: '18677'
    relation: earlier_version
    status: public
  - id: '18697'
    relation: research_data
    status: public
scopus_import: '1'
status: public
title: Light-microscopy-based connectomic reconstruction of mammalian brain tissue
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 642
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '19738'
abstract:
- lang: eng
  text: "Garbling is a fundamental cryptographic primitive, with numerous theoretical
    and practical applications. Since the first construction by Yao (FOCS’82, ’86),
    a line of work has concerned itself with reducing the communication and computational
    complexity of that construction. One of the most efficient garbling schemes presently
    is the ‘Half Gates’ scheme by Zahur, Rosulek, and Evans (Eurocrypt’15). Despite
    its widespread adoption, the provable security of this scheme has been based on
    assumptions whose only instantiations are in idealized models. For example, in
    their original paper, Zahur, Rosulek, and Evans showed that hash functions satisfying
    a notion called circular correlation robustness (CCR) suffice for this task, and
    then proved that CCR secure hash functions can be instantiated in the random permutation
    model.\r\nIn this work, we show how to securely instantiate the Half Gates scheme
    in the standard model. To this end, we first show how this scheme can be securely
    instantiated given a (family of) weak CCR hash function, a notion that we introduce.
    Furthermore, we show how a weak CCR hash function can be used to securely instantiate
    other efficient garbling schemes, namely the ones by Rosulek and Roy (Crypto’21)
    and Heath (Eurocrypt’24). Thus we believe this notion to be of independent interest.\r\nFinally,
    we construct such weak CCR hash functions using indistinguishability obfuscation
    and one-way functions. The security proof of this construction constitutes our
    main technical contribution. While our construction is not practical, it serves
    as a proof of concept supporting the soundness of these garbling schemes, which
    we regard to be particularly important given the recent initiative by NIST to
    standardize garbling, and the optimizations in Half Gates being potentially adopted."
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Anasuya
  full_name: Acharya, Anasuya
  last_name: Acharya
- first_name: Karen
  full_name: Azari, Karen
  last_name: Azari
- first_name: Mirza Ahad
  full_name: Baig, Mirza Ahad
  id: 3EDE6DE4-AA5A-11E9-986D-341CE6697425
  last_name: Baig
- first_name: Dennis
  full_name: Hofheinz, Dennis
  last_name: Hofheinz
- first_name: Chethan
  full_name: Kamath, Chethan
  last_name: Kamath
citation:
  ama: 'Acharya A, Azari K, Baig MA, Hofheinz D, Kamath C. Securely instantiating
    ‘Half Gates’ garbling in the standard model. In: <i>28th IACR International Conference
    on Practice and Theory of Public-Key Cryptography</i>. Vol 15677. Springer Nature;
    2025:37-75. doi:<a href="https://doi.org/10.1007/978-3-031-91829-2_2">10.1007/978-3-031-91829-2_2</a>'
  apa: 'Acharya, A., Azari, K., Baig, M. A., Hofheinz, D., &#38; Kamath, C. (2025).
    Securely instantiating ‘Half Gates’ garbling in the standard model. In <i>28th
    IACR International Conference on Practice and Theory of Public-Key Cryptography</i>
    (Vol. 15677, pp. 37–75). Roros, Norway: Springer Nature. <a href="https://doi.org/10.1007/978-3-031-91829-2_2">https://doi.org/10.1007/978-3-031-91829-2_2</a>'
  chicago: Acharya, Anasuya, Karen Azari, Mirza Ahad Baig, Dennis Hofheinz, and Chethan
    Kamath. “Securely Instantiating ‘Half Gates’ Garbling in the Standard Model.”
    In <i>28th IACR International Conference on Practice and Theory of Public-Key
    Cryptography</i>, 15677:37–75. Springer Nature, 2025. <a href="https://doi.org/10.1007/978-3-031-91829-2_2">https://doi.org/10.1007/978-3-031-91829-2_2</a>.
  ieee: A. Acharya, K. Azari, M. A. Baig, D. Hofheinz, and C. Kamath, “Securely instantiating
    ‘Half Gates’ garbling in the standard model,” in <i>28th IACR International Conference
    on Practice and Theory of Public-Key Cryptography</i>, Roros, Norway, 2025, vol.
    15677, pp. 37–75.
  ista: 'Acharya A, Azari K, Baig MA, Hofheinz D, Kamath C. 2025. Securely instantiating
    ‘Half Gates’ garbling in the standard model. 28th IACR International Conference
    on Practice and Theory of Public-Key Cryptography. PKC: Public-Key Cryptography,
    LNCS, vol. 15677, 37–75.'
  mla: Acharya, Anasuya, et al. “Securely Instantiating ‘Half Gates’ Garbling in the Standard
    Model.” <i>28th IACR International Conference on Practice and Theory of Public-Key
    Cryptography</i>, vol. 15677, Springer Nature, 2025, pp. 37–75, doi:<a href="https://doi.org/10.1007/978-3-031-91829-2_2">10.1007/978-3-031-91829-2_2</a>.
  short: A. Acharya, K. Azari, M.A. Baig, D. Hofheinz, C. Kamath, in:, 28th IACR International
    Conference on Practice and Theory of Public-Key Cryptography, Springer Nature,
    2025, pp. 37–75.
conference:
  end_date: 2025-05-15
  location: Roros, Norway
  name: 'PKC: Public-Key Cryptography'
  start_date: 2025-05-12
date_created: 2025-05-25T22:17:02Z
date_published: 2025-05-05T00:00:00Z
date_updated: 2025-06-02T07:01:45Z
day: '05'
department:
- _id: KrPi
- _id: GradSch
doi: 10.1007/978-3-031-91829-2_2
intvolume: '     15677'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://eprint.iacr.org/2025/281
month: '05'
oa: 1
oa_version: Preprint
page: 37-75
publication: 28th IACR International Conference on Practice and Theory of Public-Key
  Cryptography
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783031918285'
  issn:
  - 0302-9743
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Securely instantiating ‘Half Gates’ garbling in the standard model
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15677
year: '2025'
...
---
OA_place: publisher
_id: '19759'
abstract:
- lang: eng
  text: "Despite generating remarkable results in various computer vision tasks, deep
    learning comes\r\nwith some surprising shortcomings. For example, tiny perturbations,
    often imperceptible to\r\nthe human eye, can completely change the predictions
    of image classifiers. Despite a decade\r\nof research, the field has made limited
    progress in developing image classifiers that are both\r\naccurate and robust.
    This thesis aims to address this gap.\r\nAs our first contribution, we aim to
    simplify the process of training certifiably robust image\r\nclassifiers. We do
    this by designing a convolutional layer that does not require executing an\r\niterative
    procedure in every forward pass, but relies on an explicit bound instead. We also\r\npropose
    a loss function that allows optimizing for a particular margin more precisely.\r\nNext,
    we provide an overview and comparison of various methods that create robust image\r\nclassifiers
    by constraining the Lipschitz constant. This is important since generally longer\r\ntraining
    times and more parameters improve the performance of robust classifiers, making
    it\r\nchallenging to determine the most practical and effective methods from existing
    literature.\r\nIn 1-Lipschitz classification, the performance of current methods
    is still much worse than what\r\nwe expect on the simple tasks we consider. Therefore,
    we next investigate potential causes of\r\nthis shortcoming. We first consider
    the role of the activation function. We prove a theoretical\r\nshortcoming of
    the commonly used activation function, and provide an alternative without it.\r\nHowever
    this theoretical improvement does barely translate to the empirical performance
    of\r\nrobust classifiers, suggesting a different bottleneck.\r\nTherefore, in
    the final chapter, we study how the performance depends on the amount of\r\ntraining
    data. We prove that in the worst case, we might require far more data to train
    a\r\nrobust classifier compared to a normal one. We furthermore find that the
    amount of training\r\ndata is a key determinant of the performance current methods
    achieve on popular datasets.\r\nAdditionally, we show that linear subspaces exist
    with tiny data variance, and yet we can\r\nstill train very accurate classifiers
    after projecting into those subspaces. This shows that on\r\nthe datasets considered,
    enforcing robustness in classification makes the task strictly more\r\nchallenging.\r\n\r\n-----------------“In
    reference to IEEE copyrighted material which is used with permission in this thesis,
    the IEEE does not endorse any of [name of university or educational entity]’s
    products or services. Internal or personal use of this material is permitted.
    If interested in reprinting/republishing IEEE copyrighted material for advertising
    or promotional purposes or for creating new collective works for resale or redistribution,
    please go to http://www.ieee.org/publications_standards/publications/rights/rights_link.html
    to learn how to obtain a License from RightsLink. If applicable, University Microfilms
    and/or ProQuest Library, or the Archives of Canada may supply single copies of
    the dissertation.”\r\n"
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Bernd
  full_name: Prach, Bernd
  id: 2D561D42-C427-11E9-89B4-9C1AE6697425
  last_name: Prach
citation:
  ama: Prach B. Robust image classification with 1-Lipschitz networks. 2025. doi:<a
    href="https://doi.org/10.15479/10.15479/at-ista-19759">10.15479/10.15479/at-ista-19759</a>
  apa: Prach, B. (2025). <i>Robust image classification with 1-Lipschitz networks</i>.
    Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/10.15479/at-ista-19759">https://doi.org/10.15479/10.15479/at-ista-19759</a>
  chicago: Prach, Bernd. “Robust Image Classification with 1-Lipschitz Networks.”
    Institute of Science and Technology Austria, 2025. <a href="https://doi.org/10.15479/10.15479/at-ista-19759">https://doi.org/10.15479/10.15479/at-ista-19759</a>.
  ieee: B. Prach, “Robust image classification with 1-Lipschitz networks,” Institute
    of Science and Technology Austria, 2025.
  ista: Prach B. 2025. Robust image classification with 1-Lipschitz networks. Institute
    of Science and Technology Austria.
  mla: Prach, Bernd. <i>Robust Image Classification with 1-Lipschitz Networks</i>.
    Institute of Science and Technology Austria, 2025, doi:<a href="https://doi.org/10.15479/10.15479/at-ista-19759">10.15479/10.15479/at-ista-19759</a>.
  short: B. Prach, Robust Image Classification with 1-Lipschitz Networks, Institute
    of Science and Technology Austria, 2025.
corr_author: '1'
date_created: 2025-05-28T16:20:48Z
date_published: 2025-05-30T00:00:00Z
date_updated: 2026-04-07T11:49:52Z
day: '30'
ddc:
- '000'
degree_awarded: PhD
department:
- _id: GradSch
- _id: ChLa
doi: 10.15479/10.15479/at-ista-19759
file:
- access_level: open_access
  checksum: e5108e759014e2a9020c973c778fafc9
  content_type: application/pdf
  creator: bprach
  date_created: 2025-06-10T18:11:05Z
  date_updated: 2025-06-10T18:11:05Z
  file_id: '19829'
  file_name: ThesisFinal.pdf
  file_size: 3578077
  relation: main_file
- access_level: closed
  checksum: 51bf6c11fb6d8a9f8010b458c600a83f
  content_type: application/x-zip-compressed
  creator: bprach
  date_created: 2025-06-10T18:14:03Z
  date_updated: 2025-06-10T18:14:03Z
  file_id: '19830'
  file_name: ThesisFinal.zip
  file_size: 74894357
  relation: source_file
file_date_updated: 2025-06-10T18:14:03Z
has_accepted_license: '1'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: '84'
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '15039'
    relation: part_of_dissertation
    status: public
  - id: '18874'
    relation: part_of_dissertation
    status: public
  - id: '17426'
    relation: part_of_dissertation
    status: public
  - id: '11839'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
title: Robust image classification with 1-Lipschitz networks
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2025'
...
---
OA_place: repository
OA_type: green
_id: '19778'
abstract:
- lang: eng
  text: "A verifiable delay function VDF(x, T)->(y, π) maps an input x and time parameter
    T to an output y together with an efficiently verifiable proof π certifying that
    y was correctly computed. The function runs in T sequential steps, and it should
    not be possible to compute y much faster than that. The only known practical VDFs
    use sequential squaring in groups of unknown order as the sequential function,
    i.e., y = x^2^T. There are two constructions for the proof of exponentiation (PoE)
    certifying that y = x^2^T, with Wesolowski (Eurocrypt’19) having very short proofs,
    but they are more expensive to compute and the soundness relies on stronger assumptions
    than the PoE proposed by Pietrzak (ITCS’19).\r\nA recent application of VDFs by
    Arun, Bonneau and Clark (Asiacrypt’22) are short-lived proofs and signatures,
    which are proofs and signatures that are only sound for some time t, but after
    that can be forged by anyone. For this they rely on “watermarkable VDFs”, where
    the proof embeds a prover chosen watermark. To achieve stronger notions of proofs/signatures
    with reusable forgeability, they rely on “zero-knowledge VDFs”, where instead
    of the output y, one just proves knowledge of this output. The existing proposals
    for watermarkable and zero-knowledge VDFs all build on Wesolowski’s PoE, for the
    watermarkable VDFs there’s currently no security proof.\r\n\r\nIn this work we
    give the first constructions that transform any PoEs in hidden order groups into
    watermarkable VDFs and into zkVDFs, solving an open question by Arun et al. Unlike
    our watermarkable VDF, the zkVDF (required for reusable forgeability) is not very
    practical as the number of group elements in the proof is a security parameter.
    To address this, we introduce the notion of zero-knowledge proofs of sequential
    work (zkPoSW), a notion that relaxes zkVDFs by not requiring that the output is
    unique. We show that zkPoSW are sufficient to construct proofs or signatures with
    reusable forgeability, and construct efficient zkPoSW from any PoE, ultimately
    achieving short lived proofs and signatures that improve upon Arun et al.’s construction
    in several dimensions (faster forging times, arguably weaker assumptions).\r\nA
    key idea underlying our constructions is to not directly construct a (watermarked
    or zk) proof for y = x^2^T, but instead give a (watermarked or zk) proof for the
    more basic statement that \r\nx^l, y^l satisfy x^l = x ^r, y^l = y^r for some
    r, together with a normal PoE for y^l = (x^l)^2^T."
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Charlotte
  full_name: Hoffmann, Charlotte
  id: 0f78d746-dc7d-11ea-9b2f-83f92091afe7
  last_name: Hoffmann
  orcid: 0000-0003-2027-5549
- first_name: Krzysztof Z
  full_name: Pietrzak, Krzysztof Z
  id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
  last_name: Pietrzak
  orcid: 0000-0002-9139-1654
citation:
  ama: 'Hoffmann C, Pietrzak KZ. Watermarkable and zero-knowledge Verifiable Delay
    Functions from any proof of exponentiation. In: <i>28th IACR International Conference
    on Practice and Theory of Public-Key Cryptography</i>. Vol 15674. Springer Nature;
    2025:36-66. doi:<a href="https://doi.org/10.1007/978-3-031-91820-9_2">10.1007/978-3-031-91820-9_2</a>'
  apa: 'Hoffmann, C., &#38; Pietrzak, K. Z. (2025). Watermarkable and zero-knowledge
    Verifiable Delay Functions from any proof of exponentiation. In <i>28th IACR International
    Conference on Practice and Theory of Public-Key Cryptography</i> (Vol. 15674,
    pp. 36–66). Roros, Norway: Springer Nature. <a href="https://doi.org/10.1007/978-3-031-91820-9_2">https://doi.org/10.1007/978-3-031-91820-9_2</a>'
  chicago: Hoffmann, Charlotte, and Krzysztof Z Pietrzak. “Watermarkable and Zero-Knowledge
    Verifiable Delay Functions from Any Proof of Exponentiation.” In <i>28th IACR
    International Conference on Practice and Theory of Public-Key Cryptography</i>,
    15674:36–66. Springer Nature, 2025. <a href="https://doi.org/10.1007/978-3-031-91820-9_2">https://doi.org/10.1007/978-3-031-91820-9_2</a>.
  ieee: C. Hoffmann and K. Z. Pietrzak, “Watermarkable and zero-knowledge Verifiable
    Delay Functions from any proof of exponentiation,” in <i>28th IACR International
    Conference on Practice and Theory of Public-Key Cryptography</i>, Roros, Norway,
    2025, vol. 15674, pp. 36–66.
  ista: 'Hoffmann C, Pietrzak KZ. 2025. Watermarkable and zero-knowledge Verifiable
    Delay Functions from any proof of exponentiation. 28th IACR International Conference
    on Practice and Theory of Public-Key Cryptography. PKC: Public-Key Cryptography,
    LNCS, vol. 15674, 36–66.'
  mla: Hoffmann, Charlotte, and Krzysztof Z. Pietrzak. “Watermarkable and Zero-Knowledge
    Verifiable Delay Functions from Any Proof of Exponentiation.” <i>28th IACR International
    Conference on Practice and Theory of Public-Key Cryptography</i>, vol. 15674,
    Springer Nature, 2025, pp. 36–66, doi:<a href="https://doi.org/10.1007/978-3-031-91820-9_2">10.1007/978-3-031-91820-9_2</a>.
  short: C. Hoffmann, K.Z. Pietrzak, in:, 28th IACR International Conference on Practice
    and Theory of Public-Key Cryptography, Springer Nature, 2025, pp. 36–66.
conference:
  end_date: 2025-05-15
  location: Roros, Norway
  name: 'PKC: Public-Key Cryptography'
  start_date: 2025-05-12
corr_author: '1'
date_created: 2025-06-03T07:30:21Z
date_published: 2025-01-01T00:00:00Z
date_updated: 2026-04-16T09:11:09Z
day: '01'
department:
- _id: KrPi
- _id: GradSch
doi: 10.1007/978-3-031-91820-9_2
intvolume: '     15674'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://ia.cr/2024/481
month: '01'
oa: 1
oa_version: Preprint
page: 36-66
publication: 28th IACR International Conference on Practice and Theory of Public-Key
  Cryptography
publication_identifier:
  eisbn:
  - '9783031918209'
  eissn:
  - 1611-3349
  isbn:
  - '9783031918193'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  record:
  - id: '20920'
    relation: dissertation_contains
    status: public
  - id: '20556'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Watermarkable and zero-knowledge Verifiable Delay Functions from any proof
  of exponentiation
type: conference
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
volume: 15674
year: '2025'
...
---
DOAJ_listed: '1'
OA_place: publisher
OA_type: gold
_id: '19795'
abstract:
- lang: eng
  text: Super-resolution microscopy often entails long acquisition times of minutes
    to hours. Since drifts during the acquisition adversely affect data quality, active
    sample stabilization is commonly used for some of these techniques to reach their
    full potential. Although drifts in the lateral plane can often be corrected after
    acquisition, this is not always possible or may come with drawbacks. Therefore,
    it is appealing to stabilize sample position in three dimensions (3D) during acquisition.
    Various schemes for active sample stabilization have been demonstrated previously,
    with some reaching sub-nanometer stability in 3D. Here, we present a scheme for
    active drift correction that delivers the nanometer-scale 3D stability demanded
    by state-of-the-art super-resolution techniques and is straightforward to implement
    compared to previous schemes capable of reaching this level of stabilization precision.
    Using a refined algorithm that can handle various types of reference structure,
    without sparse signal peaks being mandatory, we stabilized sample position to
    ∼1 nm in 3D using objective lenses both with high and low numerical aperture.
    Our implementation requires only the addition of a simple widefield imaging path
    and we provide an open-source control software with graphical user interface to
    facilitate easy adoption of the module. Finally, we demonstrate how this has the
    potential to enhance data collection for diffraction-limited and super-resolution
    imaging techniques using single-molecule localization microscopy and cryo-confocal
    imaging as showcases.
acknowledged_ssus:
- _id: M-Shop
- _id: EM-Fac
- _id: LifeSc
acknowledgement: 'We acknowledge expert support by ISTA’s scientific service units,
  including the Miba Machine Shop, the Electron Microscopy Facility, and the Lab Support
  Facility. This work has been made possible in part by CZI grant DAF2021-234754 and
  grant DOI: https://doi.org/10.37921/812628ebpcwg from the Chan Zuckerberg Initiative
  DAF, an advised fund of Silicon Valley Community Foundation (funder DOI: https://doi.org/10.13039/100014989)
  (F.K.M.S. and J.G.D.). We further gratefully acknowledge funding by the following
  sources: Austrian Science Fund (FWF) grant DK W1232 (M.R.T. and J.G.D.); Austrian
  Academy of Sciences DOC fellowship 26137 (M.R.T.); Marie Skłodowska-Curie Actions
  Fellowship GA no. 665385 under the EU Horizon 2020 program (J.L.); ISTA postdoctoral
  fellowship IST fellow (A.W.); and Human Frontier Science Program postdoctoral fellowship
  LT000557/2018 (W.J.).'
article_number: '100211'
article_processing_charge: Yes
article_type: original
author:
- first_name: Jakob
  full_name: Vorlaufer, Jakob
  id: 937696FA-C996-11E9-8C7C-CF13E6697425
  last_name: Vorlaufer
  orcid: 0009-0000-7590-3501
- first_name: Nikolai
  full_name: Semenov, Nikolai
  id: e64d39c7-72ef-11ef-b75a-ee3046860d1b
  last_name: Semenov
- first_name: Caroline
  full_name: Kreuzinger, Caroline
  id: 382077BA-F248-11E8-B48F-1D18A9856A87
  last_name: Kreuzinger
- first_name: Manjunath
  full_name: Javoor, Manjunath
  id: 305ab18b-dc7d-11ea-9b2f-b58195228ea2
  last_name: Javoor
  orcid: 0000-0003-2311-2112
- first_name: Bettina
  full_name: Zens, Bettina
  id: 45FD126C-F248-11E8-B48F-1D18A9856A87
  last_name: Zens
  orcid: 0000-0002-9561-1239
- first_name: Nathalie
  full_name: Agudelo Duenas, Nathalie
  id: 40E7F008-F248-11E8-B48F-1D18A9856A87
  last_name: Agudelo Duenas
- first_name: Mojtaba
  full_name: Tavakoli, Mojtaba
  id: 3A0A06F4-F248-11E8-B48F-1D18A9856A87
  last_name: Tavakoli
  orcid: 0000-0002-7667-6854
- first_name: Marek
  full_name: Suplata, Marek
  id: EE8452B8-C26A-11E9-B157-E80CE6697425
  last_name: Suplata
- first_name: Wiebke
  full_name: Jahr, Wiebke
  id: 425C1CE8-F248-11E8-B48F-1D18A9856A87
  last_name: Jahr
  orcid: 0000-0003-0201-2315
- first_name: Julia
  full_name: Lyudchik, Julia
  id: 46E28B80-F248-11E8-B48F-1D18A9856A87
  last_name: Lyudchik
- first_name: Andreas
  full_name: Wartak, Andreas
  id: 60aaa06c-3de5-11eb-9e53-baa88e955dcb
  last_name: Wartak
- first_name: Florian Km
  full_name: Schur, Florian Km
  id: 48AD8942-F248-11E8-B48F-1D18A9856A87
  last_name: Schur
  orcid: 0000-0003-4790-8078
- first_name: Johann G
  full_name: Danzl, Johann G
  id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
  last_name: Danzl
  orcid: 0000-0001-8559-3973
citation:
  ama: Vorlaufer J, Semenov N, Kreuzinger C, et al. Image-based 3D active sample stabilization
    on the nanometer scale for optical microscopy. <i>Biophysical Reports</i>. 2025;5(2).
    doi:<a href="https://doi.org/10.1016/j.bpr.2025.100211">10.1016/j.bpr.2025.100211</a>
  apa: Vorlaufer, J., Semenov, N., Kreuzinger, C., Javoor, M., Zens, B., Agudelo Duenas,
    N., … Danzl, J. G. (2025). Image-based 3D active sample stabilization on the nanometer
    scale for optical microscopy. <i>Biophysical Reports</i>. Elsevier. <a href="https://doi.org/10.1016/j.bpr.2025.100211">https://doi.org/10.1016/j.bpr.2025.100211</a>
  chicago: Vorlaufer, Jakob, Nikolai Semenov, Caroline Kreuzinger, Manjunath Javoor,
    Bettina Zens, Nathalie Agudelo Duenas, Mojtaba Tavakoli, et al. “Image-Based 3D
    Active Sample Stabilization on the Nanometer Scale for Optical Microscopy.” <i>Biophysical
    Reports</i>. Elsevier, 2025. <a href="https://doi.org/10.1016/j.bpr.2025.100211">https://doi.org/10.1016/j.bpr.2025.100211</a>.
  ieee: J. Vorlaufer <i>et al.</i>, “Image-based 3D active sample stabilization on
    the nanometer scale for optical microscopy,” <i>Biophysical Reports</i>, vol.
    5, no. 2. Elsevier, 2025.
  ista: Vorlaufer J, Semenov N, Kreuzinger C, Javoor M, Zens B, Agudelo Duenas N,
    Tavakoli M, Suplata M, Jahr W, Lyudchik J, Wartak A, Schur FK, Danzl JG. 2025.
    Image-based 3D active sample stabilization on the nanometer scale for optical
    microscopy. Biophysical Reports. 5(2), 100211.
  mla: Vorlaufer, Jakob, et al. “Image-Based 3D Active Sample Stabilization on the
    Nanometer Scale for Optical Microscopy.” <i>Biophysical Reports</i>, vol. 5, no.
    2, 100211, Elsevier, 2025, doi:<a href="https://doi.org/10.1016/j.bpr.2025.100211">10.1016/j.bpr.2025.100211</a>.
  short: J. Vorlaufer, N. Semenov, C. Kreuzinger, M. Javoor, B. Zens, N. Agudelo Duenas,
    M. Tavakoli, M. Suplata, W. Jahr, J. Lyudchik, A. Wartak, F.K. Schur, J.G. Danzl,
    Biophysical Reports 5 (2025).
corr_author: '1'
date_created: 2025-06-08T22:01:22Z
date_published: 2025-06-11T00:00:00Z
date_updated: 2026-04-07T11:48:07Z
day: '11'
ddc:
- '570'
department:
- _id: JoDa
- _id: GradSch
- _id: FlSc
- _id: EM-Fac
doi: 10.1016/j.bpr.2025.100211
ec_funded: 1
file:
- access_level: open_access
  checksum: 4018c833f25a3ad3b57e3577fed70334
  content_type: application/pdf
  creator: dernst
  date_created: 2025-06-10T07:24:46Z
  date_updated: 2025-06-10T07:24:46Z
  file_id: '19802'
  file_name: 2025_BiophysicalReports_Vorlaufer.pdf
  file_size: 7238179
  relation: main_file
  success: 1
file_date_updated: 2025-06-10T07:24:46Z
has_accepted_license: '1'
intvolume: '         5'
issue: '2'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: 62909c6f-2b32-11ec-9570-e1476aab5308
  grant_number: CZI01
  name: CryoMinflux-guided in-situ molecular census and structure determination
- _id: 6285a163-2b32-11ec-9570-8e204ca2dba5
  grant_number: '26137'
  name: Studying Organelle Structure and Function at Nanoscale Resolution with Expansion
    Microscopy
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
- _id: 26AA4EF2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: W1232-B24
  name: Molecular Drug Targets
- _id: 2668BFA0-B435-11E9-9278-68D0E5697425
  grant_number: LT00057
  name: High-speed 3D-nanoscopy to study the role of adhesion during 3D cell migration
publication: Biophysical Reports
publication_identifier:
  eissn:
  - 2667-0747
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  record:
  - id: '20206'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Image-based 3D active sample stabilization on the nanometer scale for optical
  microscopy
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2025'
...
---
OA_place: publisher
OA_type: hybrid
_id: '19852'
abstract:
- lang: eng
  text: "Technology involving hybrid superconductor–semiconductor materials is a promising
    avenue for engineering quantum devices for information storage, manipulation,
    and transmission. Proximity-induced superconducting correlations are an essential
    part of such devices. While the proximity effect in the conduction band of common
    semiconductors is well understood, its manifestation in confined hole gases, realized
    for instance in germanium, is an active area of research. Lower-dimensional hole-based
    systems, particularly in germanium, are emerging as an attractive platform for
    a variety of solid-state quantum devices, due to their combination of efficient
    spin and charge control and long coherence times. The recent experimental realization
    of the proximity effect in germanium thus calls for a theoretical description
    that is tailored to hole gases. In this work, we propose a simple model to describe
    proximity-induced superconductivity in two-dimensional hole gases, incorporating
    both the heavy-hole (HH) and light-hole (LH) bands. We start from the Luttinger–Kohn
    model, introduce three parameters that characterize hopping across the superconductor–semiconductor
    interface, and derive explicit intraband and interband effective pairing terms
    for the HH and LH bands. Unlike previous approaches, our theory provides a quantitative
    relationship between induced pairings and interface properties. Restricting our
    general model to an experimentally relevant case where only the HH band crosses
    the chemical potential, we predict the coexistence of \U0001D460-wave and \U0001D451-wave
    singlet pairings, along with triplet-type pairings, and modified Zeeman and Rashba
    spin–orbit couplings. Our results thus present a starting point for theoretical
    modeling of quantum devices based on proximitized hole gases, fueling further
    progress in quantum technology."
acknowledgement: We acknowledge useful discussions with Georgios Katsaros, Andrew
  Higginbotham, and Oliver Schwarze. This research was funded in part by the Austrian
  Science Fund (FWF) F 86, the European Research Council (Grant Agreement No. 856526),
  and by the DFG Collaborative Research Center (CRC) 183 Project No. 277101999.
article_number: '214518'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Serafim
  full_name: Babkin, Serafim
  id: e63d75c3-72ef-11ef-b75a-e303e149911f
  last_name: Babkin
- first_name: Benjamin
  full_name: Joecker, Benjamin
  last_name: Joecker
- first_name: Karsten
  full_name: Flensberg, Karsten
  last_name: Flensberg
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
- first_name: Jeroen
  full_name: Danon, Jeroen
  last_name: Danon
citation:
  ama: Babkin S, Joecker B, Flensberg K, Serbyn M, Danon J. Superconducting proximity
    effect in two-dimensional hole gases. <i>Physical Review B</i>. 2025;111(21).
    doi:<a href="https://doi.org/10.1103/k4jh-pnxy">10.1103/k4jh-pnxy</a>
  apa: Babkin, S., Joecker, B., Flensberg, K., Serbyn, M., &#38; Danon, J. (2025).
    Superconducting proximity effect in two-dimensional hole gases. <i>Physical Review
    B</i>. American Physical Society. <a href="https://doi.org/10.1103/k4jh-pnxy">https://doi.org/10.1103/k4jh-pnxy</a>
  chicago: Babkin, Serafim, Benjamin Joecker, Karsten Flensberg, Maksym Serbyn, and
    Jeroen Danon. “Superconducting Proximity Effect in Two-Dimensional Hole Gases.”
    <i>Physical Review B</i>. American Physical Society, 2025. <a href="https://doi.org/10.1103/k4jh-pnxy">https://doi.org/10.1103/k4jh-pnxy</a>.
  ieee: S. Babkin, B. Joecker, K. Flensberg, M. Serbyn, and J. Danon, “Superconducting
    proximity effect in two-dimensional hole gases,” <i>Physical Review B</i>, vol.
    111, no. 21. American Physical Society, 2025.
  ista: Babkin S, Joecker B, Flensberg K, Serbyn M, Danon J. 2025. Superconducting
    proximity effect in two-dimensional hole gases. Physical Review B. 111(21), 214518.
  mla: Babkin, Serafim, et al. “Superconducting Proximity Effect in Two-Dimensional
    Hole Gases.” <i>Physical Review B</i>, vol. 111, no. 21, 214518, American Physical
    Society, 2025, doi:<a href="https://doi.org/10.1103/k4jh-pnxy">10.1103/k4jh-pnxy</a>.
  short: S. Babkin, B. Joecker, K. Flensberg, M. Serbyn, J. Danon, Physical Review
    B 111 (2025).
corr_author: '1'
date_created: 2025-06-19T16:54:54Z
date_published: 2025-06-18T00:00:00Z
date_updated: 2025-09-30T12:53:47Z
day: '18'
ddc:
- '530'
department:
- _id: MaSe
- _id: GradSch
doi: 10.1103/k4jh-pnxy
external_id:
  arxiv:
  - '2412.04084'
  isi:
  - '001514328000004'
file:
- access_level: open_access
  checksum: fa8757f4780cfaeb51579c626284a8c1
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  creator: dernst
  date_created: 2025-06-23T10:31:11Z
  date_updated: 2025-06-23T10:31:11Z
  file_id: '19869'
  file_name: 2025_PhysReviewB_Babkin.pdf
  file_size: 1719489
  relation: main_file
  success: 1
file_date_updated: 2025-06-23T10:31:11Z
has_accepted_license: '1'
intvolume: '       111'
isi: 1
issue: '21'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: 34a7f947-11ca-11ed-8bc3-c5dc2bbaae25
  grant_number: F8609
  name: 'Center for Correlated Quantum Materials and Solid State Quantum Systems:  Probing
    topology in circuits and quantum materials'
publication: Physical Review B
publication_identifier:
  eissn:
  - 2469-9969
  issn:
  - 2469-9950
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Superconducting proximity effect in two-dimensional hole gases
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 317138e5-6ab7-11ef-aa6d-ffef3953e345
volume: 111
year: '2025'
...
---
OA_place: publisher
_id: '19853'
abstract:
- lang: eng
  text: "The internal dynamical properties of red giant stars have been explored extensively
    in recent\r\nyears as a result of the increase in high precision data availability
    from the space missions\r\nKepler and TESS (Transiting Exoplanet Survey Satellite),
    and in this exploration, it has been\r\ndiscovered that some of these stars are
    not behaving as expected. Red giants are stars that have\r\nevolved off of the
    main sequence after having completed fusing hydrogen into helium in their\r\ncore.
    Observational data shows that the cores are rotating significantly slower than
    models can\r\nrecreate consistently across evolutionary stages. This discrepancy
    has prompted investigation\r\ninto the efficiency of angular momentum transport
    mechanisms and mixing processes including\r\nmeridional circulation, shear instability,
    internal gravity waves, Tayler-Spruit dynamo, fossil\r\nmagnetic fields etc.,
    to explain this behavior.\r\nAnalyzing seismic oscillations in stars, via asteroseismology,
    is a powerful tool as it is the only\r\nway in which the deep stellar interior
    can be probed and subsequently characterized; this is\r\npossible as global oscillations
    modulating the stellar surface are effected by internal processes.\r\nFor red
    giants, p-modes (pressure modes; resonating through the entire star) and g-modes\r\n(gravity-modes;
    resonating in the radiative interior) couple to create mixed modes. These\r\nmixed
    modes give access to the otherwise hidden stellar interior as g-modes couple to
    p-modes,\r\ndelivering information from the interior to the surface.\r\nInternal
    magnetic signatures have been observationally confirmed in red giant stars via\r\nasteroseismology
    and characterized in two ways. One being that dipole mixed modes with\r\nℓ = 1
    will display a global asymmetric frequency shift of its azimuthal components;
    where\r\nthe m = 0 and m = ±1 components of the ℓ = 1 dipole mode will be shifted
    by two\r\ndifferent power laws, respectively. And the other being a reduced visibility
    of dipole mixed\r\nmode amplitudes in the power spectra, where stars presenting
    with this feature are denoted as\r\nsuppressed.\r\nSeveral studies of the suppressed
    dipole mixed mode amplitudes have been carried out, but thus\r\nfar, no dedicated
    studies of the asymmetric frequency shifts of suppressed red giants have been\r\nconducted;
    one reason being that the asymmetric frequency shifts cannot be characterized\r\nwhen
    the dipole mixed mode amplitudes are severely reduced in many of the suppressed
    stars.\r\nSincefullysuppressedstarsdonothavedetectablemixed-modestoevaluate, partiallysuppressed\r\nstars,
    that is, red giant stars presenting with suppressed dipole mixed modes in select
    parts of\r\ntheir power spectra rather than across the entire spectra, will be
    the subject of this study as\r\nthe respective mode amplitudes are still visible
    at high frequencies.\r\nAs such, this study will search for asymmetric frequency
    shifts on the dipole mixed\r\nmodes of partially suppressed red giant stars; the
    aim here is to investigate if both\r\nmode suppression and magnetic shifting of
    dipole mixed modes occur simultaneously.\r\nThisstudywillbeconductedbycreatingapipelinetoestimatepriorsofasteroseismicparameters,\r\nuse
    the priors to model the power spectra with the stellar modeling code sloscillations_ISTA,\r\nand
    perform a Bayesian fit of the parameters with the simulated data on the star KIC
    6975038,\r\na target with partially suppressed dipolar mode amplitudes identified
    in the literature, to fit its\r\nmagnetic parameters. I present a novel method
    to model the stellar power spectra of\r\npartially suppressed red giants by application
    of a sigmoid profile to the ℓ= 1 dipolar\r\nmode component of the spectra. With
    the results of this study I aim at constraining\r\nthe cause of this partial dipole
    mode amplitude suppression, allowing for more detailed\r\nstudies regarding their
    astrophysical nature. Furthermore, the long term hope for the method\r\nused in
    this study will be to expand the sample of partially suppressed red giants and
    fit their\r\nasteroseismic parameters accordingly."
acknowledgement: "I would like to give thanks to myself for my hard work on this document.
  This paper includes data collected by the Kepler mission and obtained from the MAST
  data\r\narchive at the Space Telescope Science Institute (STScI). Funding for the
  Kepler mission is\r\nprovided by the NASA Science Mission Directorate. STScI is
  operated by the Association of\r\nUniversities for Research in Astronomy, Inc.,
  under NASA contract NAS 5–26555.\r\n"
alternative_title:
- ISTA Master's Thesis
article_processing_charge: No
author:
- first_name: Kanah
  full_name: Smith, Kanah
  id: 7703505d-3211-11ee-a6a9-a2ab9d936c15
  last_name: Smith
citation:
  ama: Smith K. Exploring internal magnetism in partially suppressed red giant stars.
    2025. doi:<a href="https://doi.org/10.15479/AT-ISTA-19853">10.15479/AT-ISTA-19853</a>
  apa: Smith, K. (2025). <i>Exploring internal magnetism in partially suppressed red
    giant stars</i>. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT-ISTA-19853">https://doi.org/10.15479/AT-ISTA-19853</a>
  chicago: Smith, Kanah. “Exploring Internal Magnetism in Partially Suppressed Red
    Giant Stars.” Institute of Science and Technology Austria, 2025. <a href="https://doi.org/10.15479/AT-ISTA-19853">https://doi.org/10.15479/AT-ISTA-19853</a>.
  ieee: K. Smith, “Exploring internal magnetism in partially suppressed red giant
    stars,” Institute of Science and Technology Austria, 2025.
  ista: Smith K. 2025. Exploring internal magnetism in partially suppressed red giant
    stars. Institute of Science and Technology Austria.
  mla: Smith, Kanah. <i>Exploring Internal Magnetism in Partially Suppressed Red Giant
    Stars</i>. Institute of Science and Technology Austria, 2025, doi:<a href="https://doi.org/10.15479/AT-ISTA-19853">10.15479/AT-ISTA-19853</a>.
  short: K. Smith, Exploring Internal Magnetism in Partially Suppressed Red Giant
    Stars, Institute of Science and Technology Austria, 2025.
corr_author: '1'
date_created: 2025-06-20T13:27:08Z
date_published: 2025-10-08T00:00:00Z
date_updated: 2026-04-07T12:01:37Z
day: '08'
ddc:
- '520'
degree_awarded: MS
department:
- _id: GradSch
- _id: LiBu
doi: 10.15479/AT-ISTA-19853
file:
- access_level: closed
  checksum: 80d241d11b69af771c1fab0998be4f19
  content_type: application/zip
  creator: ksmith
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  date_updated: 2025-10-08T09:45:33Z
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  file_name: 2025_Smith_Kanah_Thesis.zip
  file_size: 8263624
  relation: source_file
- access_level: open_access
  checksum: 13cb48cc98e00fdfe32f3ff66f17aa26
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  creator: ksmith
  date_created: 2025-10-09T14:38:57Z
  date_updated: 2025-10-09T14:38:57Z
  file_id: '20439'
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  file_size: 9748339
  relation: main_file
  success: 1
file_date_updated: 2025-10-09T14:38:57Z
has_accepted_license: '1'
keyword:
- asteroseismology
- stellar physics
- red giant
- magnetism
- suppressed
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: '38'
publication_identifier:
  issn:
  - 2791-4585
publication_status: published
publisher: Institute of Science and Technology Austria
status: public
supervisor:
- first_name: Lisa Annabelle
  full_name: Bugnet, Lisa Annabelle
  id: d9edb345-f866-11ec-9b37-d119b5234501
  last_name: Bugnet
  orcid: 0000-0003-0142-4000
title: Exploring internal magnetism in partially suppressed red giant stars
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2025'
...
---
_id: '19885'
abstract:
- lang: eng
  text: This .zip file contains the data to reproduce the figures and supplementary
    figures of "Automated All-RF Tuning for Spin Qubit Readout and Control" by Cornelius
    Carlsson and Jaime Saez-Mollejo et al.
acknowledged_ssus:
- _id: M-Shop
- _id: NanoFab
acknowledgement: 'The authors would like to thank Barnaby van Straaten, Jonas Schuff,
  Daniel Jirovec and Hanifa Tidjani for fruitful discussions. This research was supported
  by the Scientific Service Units of ISTA through resources provided by the MIBA Machine
  Shop and the Nanofabrication Facility. G.K. acknowledges support from the NOMIS
  Foundation, the HORIZON-RIA (project no. 101069515) and the FWF Projects (DOIs:
  10.55776/F86 and 10.55776/I5060). N.A. acknowledges support from the European Research
  Council (grant agreement 948932), and the Royal Society (grant no. URF/R1/191150).
  This project received support from the US Army Research Office (ARO) under Award
  No. W911NF-24-2-0043. C.C. acknowledges support from the UKRI Doctoral Training
  Partnership related to EP/W524311/1 (project ref. 2887634).'
article_processing_charge: No
author:
- first_name: Jaime
  full_name: Saez Mollejo, Jaime
  id: e0390f72-f6e0-11ea-865d-862393336714
  last_name: Saez Mollejo
citation:
  ama: Saez Mollejo J. Automated All-RF Tuning for Spin Qubit Readout and Control.
    2025. doi:<a href="https://doi.org/10.15479/AT:ISTA:19885">10.15479/AT:ISTA:19885</a>
  apa: Saez Mollejo, J. (2025). Automated All-RF Tuning for Spin Qubit Readout and
    Control. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:19885">https://doi.org/10.15479/AT:ISTA:19885</a>
  chicago: Saez Mollejo, Jaime. “Automated All-RF Tuning for Spin Qubit Readout and
    Control.” Institute of Science and Technology Austria, 2025. <a href="https://doi.org/10.15479/AT:ISTA:19885">https://doi.org/10.15479/AT:ISTA:19885</a>.
  ieee: J. Saez Mollejo, “Automated All-RF Tuning for Spin Qubit Readout and Control.”
    Institute of Science and Technology Austria, 2025.
  ista: Saez Mollejo J. 2025. Automated All-RF Tuning for Spin Qubit Readout and Control,
    Institute of Science and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:19885">10.15479/AT:ISTA:19885</a>.
  mla: Saez Mollejo, Jaime. <i>Automated All-RF Tuning for Spin Qubit Readout and
    Control</i>. Institute of Science and Technology Austria, 2025, doi:<a href="https://doi.org/10.15479/AT:ISTA:19885">10.15479/AT:ISTA:19885</a>.
  short: J. Saez Mollejo, (2025).
contributor:
- contributor_type: researcher
  first_name: Cornelius
  last_name: Carlsson
- contributor_type: researcher
  first_name: 'Federico '
  last_name: Fedele
- contributor_type: researcher
  first_name: Stefano
  last_name: Calcaterra
- contributor_type: researcher
  first_name: ' Daniel '
  last_name: Chrastina
- contributor_type: researcher
  first_name: 'Giovanni '
  last_name: Isella
- contributor_type: researcher
  first_name: Georgios
  id: 38DB5788-F248-11E8-B48F-1D18A9856A87
  last_name: Katsaros
  orcid: 0000-0001-8342-202X
- contributor_type: researcher
  first_name: Natalia
  last_name: Ares
corr_author: '1'
date_created: 2025-06-24T06:56:03Z
date_published: 2025-06-01T00:00:00Z
date_updated: 2025-07-01T07:19:26Z
day: '01'
ddc:
- '530'
department:
- _id: GradSch
- _id: GeKa
doi: 10.15479/AT:ISTA:19885
file:
- access_level: open_access
  checksum: eff1ae9e46599fdfab8da00a2ca3c289
  content_type: application/x-zip-compressed
  creator: jsaezmol
  date_created: 2025-06-24T15:14:13Z
  date_updated: 2025-06-24T15:14:13Z
  file_id: '19893'
  file_name: DatasetsPaper.zip
  file_size: 3404814792
  relation: main_file
  success: 1
- access_level: open_access
  checksum: 21840ceac04d677a799b8e5bd919804f
  content_type: text/plain
  creator: jsaezmol
  date_created: 2025-06-25T07:11:52Z
  date_updated: 2025-06-25T07:11:52Z
  file_id: '19899'
  file_name: README.txt
  file_size: 622
  relation: main_file
  success: 1
file_date_updated: 2025-06-25T07:11:52Z
has_accepted_license: '1'
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: 34c0acea-11ca-11ed-8bc3-8775e10fd452
  grant_number: '101069515'
  name: Integrated Germanium Quantum Technology
- _id: c0977eea-5a5b-11eb-8a69-a862db0cf4d1
  grant_number: I05060
  name: High impedance circuit quantum electrodynamics with hole spins
- _id: 34a66131-11ca-11ed-8bc3-a31681c6b03e
  grant_number: F8606
  name: 'Center for Correlated Quantum Materials and Solid State Quantum Systems:
    Conventional  and unconventional topological superconductors'
publisher: Institute of Science and Technology Austria
status: public
title: Automated All-RF Tuning for Spin Qubit Readout and Control
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2025'
...
---
OA_place: publisher
_id: '19903'
abstract:
- lang: eng
  text: "Cooperation, that is, one person paying a cost for another's benefit, is
    a fundamental principle without which no form of society could exist. The extent
    to which humans cooperate with each other is also an essential feature that differentiates
    them from other animals. Cooperation occurs even in the absence of altruistic
    motivations, when it is selfishly incentivised by the expectation of a future
    reward. For example, many economic interactions are well described that way. This
    kind of cooperation requires that people exhibit reciprocal behaviour that acts
    as a mechanism that rewards cooperation.\r\nWith game-theoretic models, it is
    possible to formally study potential such mechanisms and under what conditions
    they can exist. This thesis contributes to this effort by analysing recently introduced
    models of cooperation that advance on previous work by taking into account the
    potential for pre-existing inequality among cooperating individuals as well as
    the different forms that reciprocity can take.\r\nIndividuals may differ both
    intrinsically, in their abilities, as well as extrinsically, in the amount of
    resources they have available. Allowing for such differences in a model of cooperation
    helps to understand how inequality affects the potential for, and outcomes of,
    cooperation among unequals. In this thesis, it is shown that in the presence of
    intrinsic inequality, a similar unequal distribution of resources can increase
    the potential for cooperation. This effect is stronger the smaller the group is
    in which cooperation takes place. It is also shown that under particular assumptions,
    if the unequal members of a group vary the size of their contributions to a cooperative
    effort over time, they can thereby increase their efficiency and improve the collective
    outcome.\r\nCooperative behaviour in a two-person interaction can be rewarded
    either by direct reciprocation whenever the same two people interact again, or
    indirectly by a third party who observed the interaction. In the latter case of
    indirect reciprocity, individuals are proximally rewarded by a good reputation,
    which ultimately translates to being rewarded with cooperative behaviour by others.
    This mechanism can enable selfishly motivated cooperation even in circumstances
    where individuals are unlikely to meet again, akin to how money facilitates trade.
    While these two forms of reciprocity have mostly been studied in isolation, this
    thesis analyses both direct and indirect reciprocity in a general model in order
    to compare their relative effectiveness under different circumstances. The contribution
    of this thesis is an extension of previous work regarding a specific kind of interaction,
    whose parameters allow for convenient mathematical analysis, to the most general
    set of possible interactions."
acknowledgement: "The research for this thesis was supported by the European Research
  Council\r\n(grant agreements No. 863818 and No. 850529), the European Union’s Horizon
  2020 research and innovation programme (Marie Skłodowska-Curie grant agreement No.
  754411),\r\nthe Austrian Science Fund (grant DOI 10.55776/COE12), the French Agence
  Nationale\r\nde la Recherche under the Programme d’investissements d’avenir (project
  reference 17-\r\nEURE-0010) and the Australian Government through the Australian
  Research Council\r\n(grant No. SR200100005, “Securing Antarctica’s Environmental
  Future”)."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Valentin
  full_name: Hübner, Valentin
  id: 2c8aa207-dc7d-11ea-9b2f-f22972ecd910
  last_name: Hübner
  orcid: 0009-0001-5009-4987
citation:
  ama: Hübner V. Reciprocity and inequality in social dilemmas. 2025. doi:<a href="https://doi.org/10.15479/AT-ISTA-19903">10.15479/AT-ISTA-19903</a>
  apa: Hübner, V. (2025). <i>Reciprocity and inequality in social dilemmas</i>. Institute
    of Science and Technology Austria. <a href="https://doi.org/10.15479/AT-ISTA-19903">https://doi.org/10.15479/AT-ISTA-19903</a>
  chicago: Hübner, Valentin. “Reciprocity and Inequality in Social Dilemmas.” Institute
    of Science and Technology Austria, 2025. <a href="https://doi.org/10.15479/AT-ISTA-19903">https://doi.org/10.15479/AT-ISTA-19903</a>.
  ieee: V. Hübner, “Reciprocity and inequality in social dilemmas,” Institute of Science
    and Technology Austria, 2025.
  ista: Hübner V. 2025. Reciprocity and inequality in social dilemmas. Institute of
    Science and Technology Austria.
  mla: Hübner, Valentin. <i>Reciprocity and Inequality in Social Dilemmas</i>. Institute
    of Science and Technology Austria, 2025, doi:<a href="https://doi.org/10.15479/AT-ISTA-19903">10.15479/AT-ISTA-19903</a>.
  short: V. Hübner, Reciprocity and Inequality in Social Dilemmas, Institute of Science
    and Technology Austria, 2025.
corr_author: '1'
date_created: 2025-06-25T13:50:10Z
date_published: 2025-06-25T00:00:00Z
date_updated: 2026-04-07T12:30:57Z
day: '25'
ddc:
- '519'
degree_awarded: PhD
department:
- _id: GradSch
- _id: KrCh
doi: 10.15479/AT-ISTA-19903
ec_funded: 1
file:
- access_level: closed
  checksum: 794c02f8c82ca59ba6dda3bd7eed871a
  content_type: application/x-xz
  creator: vhuebner
  date_created: 2025-06-25T13:38:07Z
  date_updated: 2025-06-25T13:38:07Z
  file_id: '19905'
  file_name: Thesis Valentin Hübner source.tar.xz
  file_size: 6192760
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month: '06'
oa: 1
oa_version: Published Version
page: '157'
project:
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  call_identifier: H2020
  grant_number: '863818'
  name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication_identifier:
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
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  - id: '15083'
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  - id: '19074'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
title: Reciprocity and inequality in social dilemmas
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type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2025'
...
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abstract:
- lang: eng
  text: "Prenatal immune challenges pose significant risks to human embryonic brain
    and eye development. However, we still lack knowledge about the safe usage of
    anti-inflammatory drugs during pregnancy. Human induced pluripotent stem cell
    (hIPSC)-derived brain organoid models provide a unique opportunity to investigate
    neuronal development and have started to explore functional consequences upon
    viral infection. However, brain organoids usually lack microglia, the brain-resident
    immune cells. They are present in the early human embryonic brain and actively
    participate in neuronal circuit development. At the same time, microglia are known
    for their immune-sensing properties and will influence viral-mediated effects.
    In my thesis, I was interested to study the multifunctional role of human microglia
    during retinal development. \r\nIn chapter 1, I characterize the innate occurrence
    of IBA1+-microglia-like cells within the retinal organoid differentiation (Bartalska
    et al., 2022). Therefore, we differentiate hIPSC using an unguided retinal organoid
    differentiation protocol and observe the presence of IBA1+-microglia-like cells
    alongside retinal cups between week 3 and 4 in 2.5D culture. However, instead
    of infiltrating the neuroectodermal sides, they enrich within non-pigmented, 3D-cystic
    compartments that develop in low numbers parallel to 3D-retinal organoids. To
    enrich for IBA1+-microglia precursors (preMG), we guided the differentiation with
    a low-dosed BMP4 application, which prevents retinal cup development and enhances
    microglia and 3D-cysts formation. We characterize the differentiated preMG for
    their microglia-like identity and validated their functionality. In parallel,
    mass spectrometry identifies the 3D-cysts to express mesenchymal and epithelial
    markers. We confirm that comparable 3D-cysts are also the preferential environment
    for IBA1+-microglia-like cells within the unguided retinal organoid differentiation.
    \r\nIn chapter 2, I investigate how microglia influence retinal development and
    whether they contribute to viral-mediated consequences (Schmied et al., 2025).
    Here, we assemble preMG, which we have characterized in chapter 1, into 3D-retinal
    organoids. Once the outer plexiform layer forms, microglia-like cells (iMG) populate
    them and interact with retinal cell types. However, at this developmental stage,
    the ganglion cell number decreases in 3D-retinal organoids. Thus, we adapted the
    model into 2D which promotes their survival. Integrated iMG engulf ganglion cells
    and control their cell number. In parallel, we apply the immunostimulant POLY(I:C)
    to mimic a fetal viral infection. Although POLY(I:C) stimulation affects iMG phenotype,
    it does not influence their interaction with ganglion cells. Furthermore, iMG
    presence significantly contributes to the supernatant’s inflammatory secretome
    and increases retinal cell proliferation. Simultaneous exposure to the non-steroidal
    anti-inflammatory drug (NSAID) ibuprofen dampens POLY(I:C)-mediated consequences
    of the iMG phenotype and ameliorates cell proliferation. Remarkably, while POLY(I:C)
    disrupts neuronal calcium dynamics independent of iMG presence, ibuprofen rescues
    this effect only in the presence of iMG. Mechanistically, ibuprofen blocks the
    enzymes cyclooxygenase 1 and 2 (COX1/ PTGS1 and COX2/ PTGS2) simultaneously, from
    which iMG predominantly express COX1. Selective inhibition of COX1 does not restore
    the calcium peak amplitude upon POLY(I:C) stimulation, indicating ibuprofen’s
    effect depends on the presence and interplay of both, COX1 and COX2. \r\nIn summary,
    we characterized the 3D-retinal organoid model for the occurrence of IBA1+-microglia
    like cells. As the innately developing IBA1+-cells enrich in mesenchymal over
    retinal structures, we optimized a protocol to differentiate IBA1+-microglia precursors.
    By combining these two models we generate microglia-assembled retinal organoids.
    Our results underscore the importance of microglia during neurodevelopment, in
    the context of prenatal immune challenges and provide insight into the mechanisms
    by which ibuprofen exerts its protective effects during embryonic development."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Verena
  full_name: Hübschmann, Verena
  id: 32B7C918-F248-11E8-B48F-1D18A9856A87
  last_name: Hübschmann
citation:
  ama: Schmied V.  Human microglia impact neuronal development in retinal organoids.
    2025. doi:<a href="https://doi.org/10.15479/AT-ISTA-20074">10.15479/AT-ISTA-20074</a>
  apa: Schmied, V. (2025). <i> Human microglia impact neuronal development in retinal
    organoids</i>. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT-ISTA-20074">https://doi.org/10.15479/AT-ISTA-20074</a>
  chicago: Schmied, Verena. “ Human Microglia Impact Neuronal Development in Retinal
    Organoids.” Institute of Science and Technology Austria, 2025. <a href="https://doi.org/10.15479/AT-ISTA-20074">https://doi.org/10.15479/AT-ISTA-20074</a>.
  ieee: V. Schmied, “ Human microglia impact neuronal development in retinal organoids,”
    Institute of Science and Technology Austria, 2025.
  ista: Schmied V. 2025.  Human microglia impact neuronal development in retinal organoids.
    Institute of Science and Technology Austria.
  mla: Schmied, Verena. <i> Human Microglia Impact Neuronal Development in Retinal
    Organoids</i>. Institute of Science and Technology Austria, 2025, doi:<a href="https://doi.org/10.15479/AT-ISTA-20074">10.15479/AT-ISTA-20074</a>.
  short: V. Schmied,  Human Microglia Impact Neuronal Development in Retinal Organoids,
    Institute of Science and Technology Austria, 2025.
corr_author: '1'
date_created: 2025-07-24T12:37:22Z
date_published: 2025-07-24T00:00:00Z
date_updated: 2026-05-06T12:49:36Z
day: '24'
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degree_awarded: PhD
department:
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doi: 10.15479/AT-ISTA-20074
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language:
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month: '07'
oa: 1
oa_version: Published Version
page: '151'
project:
- _id: 9B99D380-BA93-11EA-9121-9846C619BF3A
  grant_number: SC19-017
  name: How human microglia shape developing neurons during health and inflammation
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  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
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supervisor:
- first_name: Sandra
  full_name: Siegert, Sandra
  id: 36ACD32E-F248-11E8-B48F-1D18A9856A87
  last_name: Siegert
  orcid: 0000-0001-8635-0877
title: ' Human microglia impact neuronal development in retinal organoids'
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type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
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...
---
OA_place: publisher
OA_type: hybrid
_id: '20101'
abstract:
- lang: eng
  text: 'Evading imminent threat from predators is critical for animal survival. Effective
    defensive strategies can vary, even between closely related species. However,
    the neural basis of such species-specific behaviours remains poorly understood1,2,3,4.
    Here we find that two sister species of deer mice (genus Peromyscus)5 show different
    responses to the same looming stimulus: Peromyscus maniculatus, which occupies
    densely vegetated habitats, predominantly escapes, whereas the open field specialist,
    Peromyscus polionotus, briefly freezes. This difference arises from species-specific
    escape thresholds, is largely context-independent, and can be triggered by both
    visual and auditory threat stimuli. Using immunohistochemistry and electrophysiological
    recordings, we find that although visual threat activates the superior colliculus
    in both species, the role of the dorsal periaqueductal grey (dPAG) in driving
    behaviour differs. Whereas dPAG activity scales with running speed in P. maniculatus,
    neural activity in the dPAG of P. polionotus correlates poorly with movement,
    including during visually triggered escape. Moreover, optogenetic activation of
    dPAG neurons elicits acceleration in P. maniculatus but not in P. polionotus,
    and their chemogenetic inhibition during a looming stimulus delays escape onset
    in P. maniculatus to match that of P. polionotus. Together, we trace species-specific
    escape thresholds to a central circuit node, downstream of peripheral sensory
    neurons, localizing an ecologically relevant behavioural difference to a specific
    region of the mammalian brain.'
acknowledgement: The authors thank M. Yilmaz, M. Meister, M. Joesch and T. Branco
  for advice on the behavioural experiments; C. Dulac, V. Bitsikas, E. Diel and J.
  Chen for advice on the immunohistochemistry and RNAscope experiments; J. Greenwood
  and E. Soucy for technical and engineering help; A. Chrzanowska for help and advice
  on optogenetic experiments; A. Calzoni for help aligning histological sections to
  a brain atlas; S. Worthington for statistical advice; P. Gonçalves for advice with
  the electrophysiology analysis; I. Vlaemick for help with whole cell experiments;
  R. Hellmiss for figure design; B. Sabatini, V. Stempel, K. Tyssowski and N. Sanguinetti
  for feedback on the manuscript; and Y. M. Lee and A. Tomcho for photos of P. maniculatus
  and P. leucopus habitats (Fig. 1). F.B. was supported by an HHMI International Student
  Research Fellowship, a Grant-in-Aid of the American Society of Mammalogy, a Herchel
  Smith Graduate Fellowship, a Robert A. Chapman Memorial Scholarship, and a Joan
  Brockman Williamson Fellowship. This project received funding from the European
  Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie
  grant agreement 665501 and by the FWO (12S7917N and 12S7920N) to K.R. and from European
  Research Council (ERC) (grant agreement 101075848) to K.R. V.T. was supported by
  a Harvard PRISE fellowship and a Harvard Museum of Comparative Zoology grant for
  undergraduate research. K.F. is supported by the FWO (G094616N and G091719N) and
  the NIH (1R01EY032101). This work was supported by the Howard Hughes Medical Institute,
  of which H.E.H. was an Investigator.
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Felix
  full_name: Baier, Felix
  last_name: Baier
- first_name: Katja
  full_name: Reinhard, Katja
  last_name: Reinhard
- first_name: Bram
  full_name: Nuttin, Bram
  last_name: Nuttin
- first_name: Arnau
  full_name: Sans-Dublanc, Arnau
  last_name: Sans-Dublanc
- first_name: Chen
  full_name: Liu, Chen
  last_name: Liu
- first_name: Victoria
  full_name: Tong, Victoria
  last_name: Tong
- first_name: Julie Stefanie
  full_name: Murmann, Julie Stefanie
  id: 1d390868-f128-11eb-9611-a0ca5f7833b5
  last_name: Murmann
- first_name: Keimpe
  full_name: Wierda, Keimpe
  last_name: Wierda
- first_name: Karl
  full_name: Farrow, Karl
  last_name: Farrow
- first_name: Hopi E.
  full_name: Hoekstra, Hopi E.
  last_name: Hoekstra
citation:
  ama: Baier F, Reinhard K, Nuttin B, et al. The neural basis of species-specific
    defensive behaviour in Peromyscus mice. <i>Nature</i>. 2025;645:439-447. doi:<a
    href="https://doi.org/10.1038/s41586-025-09241-2">10.1038/s41586-025-09241-2</a>
  apa: Baier, F., Reinhard, K., Nuttin, B., Sans-Dublanc, A., Liu, C., Tong, V., …
    Hoekstra, H. E. (2025). The neural basis of species-specific defensive behaviour
    in Peromyscus mice. <i>Nature</i>. Springer Nature. <a href="https://doi.org/10.1038/s41586-025-09241-2">https://doi.org/10.1038/s41586-025-09241-2</a>
  chicago: Baier, Felix, Katja Reinhard, Bram Nuttin, Arnau Sans-Dublanc, Chen Liu,
    Victoria Tong, Julie Stefanie Murmann, Keimpe Wierda, Karl Farrow, and Hopi E.
    Hoekstra. “The Neural Basis of Species-Specific Defensive Behaviour in Peromyscus
    Mice.” <i>Nature</i>. Springer Nature, 2025. <a href="https://doi.org/10.1038/s41586-025-09241-2">https://doi.org/10.1038/s41586-025-09241-2</a>.
  ieee: F. Baier <i>et al.</i>, “The neural basis of species-specific defensive behaviour
    in Peromyscus mice,” <i>Nature</i>, vol. 645. Springer Nature, pp. 439–447, 2025.
  ista: Baier F, Reinhard K, Nuttin B, Sans-Dublanc A, Liu C, Tong V, Murmann JS,
    Wierda K, Farrow K, Hoekstra HE. 2025. The neural basis of species-specific defensive
    behaviour in Peromyscus mice. Nature. 645, 439–447.
  mla: Baier, Felix, et al. “The Neural Basis of Species-Specific Defensive Behaviour
    in Peromyscus Mice.” <i>Nature</i>, vol. 645, Springer Nature, 2025, pp. 439–47,
    doi:<a href="https://doi.org/10.1038/s41586-025-09241-2">10.1038/s41586-025-09241-2</a>.
  short: F. Baier, K. Reinhard, B. Nuttin, A. Sans-Dublanc, C. Liu, V. Tong, J.S.
    Murmann, K. Wierda, K. Farrow, H.E. Hoekstra, Nature 645 (2025) 439–447.
date_created: 2025-08-03T22:01:31Z
date_published: 2025-07-23T00:00:00Z
date_updated: 2026-01-05T11:38:40Z
day: '23'
ddc:
- '570'
department:
- _id: GradSch
doi: 10.1038/s41586-025-09241-2
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title: The neural basis of species-specific defensive behaviour in Peromyscus mice
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volume: 645
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acknowledged_ssus:
- _id: Bio
- _id: LifeSc
- _id: PreCl
acknowledgement: "I would also like to acknowledge the invaluable assistance provided
  by the Plant\r\nFacility, Imaging & Optics Facility, and the Lab Support Facility.
  The technical support and\r\nresources offered by these facilities were indispensable
  to the successful completion of my\r\nexperiments."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Yiqun
  full_name: Wang, Yiqun
  id: 82F537F2-B517-11E9-84D7-6433E6697425
  last_name: Wang
citation:
  ama: Wang Y. The role of dynamin related protein 2A in cytokinin regulated plant
    growth and development. 2025. doi:<a href="https://doi.org/10.15479/AT-ISTA-20117">10.15479/AT-ISTA-20117</a>
  apa: Wang, Y. (2025). <i>The role of dynamin related protein 2A in cytokinin regulated
    plant growth and development</i>. Institute of Science and Technology Austria.
    <a href="https://doi.org/10.15479/AT-ISTA-20117">https://doi.org/10.15479/AT-ISTA-20117</a>
  chicago: Wang, Yiqun. “The Role of Dynamin Related Protein 2A in Cytokinin Regulated
    Plant Growth and Development.” Institute of Science and Technology Austria, 2025.
    <a href="https://doi.org/10.15479/AT-ISTA-20117">https://doi.org/10.15479/AT-ISTA-20117</a>.
  ieee: Y. Wang, “The role of dynamin related protein 2A in cytokinin regulated plant
    growth and development,” Institute of Science and Technology Austria, 2025.
  ista: Wang Y. 2025. The role of dynamin related protein 2A in cytokinin regulated
    plant growth and development. Institute of Science and Technology Austria.
  mla: Wang, Yiqun. <i>The Role of Dynamin Related Protein 2A in Cytokinin Regulated
    Plant Growth and Development</i>. Institute of Science and Technology Austria,
    2025, doi:<a href="https://doi.org/10.15479/AT-ISTA-20117">10.15479/AT-ISTA-20117</a>.
  short: Y. Wang, The Role of Dynamin Related Protein 2A in Cytokinin Regulated Plant
    Growth and Development, Institute of Science and Technology Austria, 2025.
corr_author: '1'
date_created: 2025-08-04T15:24:21Z
date_published: 2025-08-04T00:00:00Z
date_updated: 2026-04-07T11:49:34Z
day: '04'
ddc:
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degree_awarded: PhD
department:
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- _id: EvBe
doi: 10.15479/AT-ISTA-20117
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publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
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    status: public
status: public
supervisor:
- first_name: Eva
  full_name: Benková, Eva
  id: 38F4F166-F248-11E8-B48F-1D18A9856A87
  last_name: Benková
  orcid: 0000-0002-8510-9739
title: The role of dynamin related protein 2A in cytokinin regulated plant growth
  and development
type: dissertation
user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd
year: '2025'
...
