--- OA_place: publisher OA_type: hybrid PlanS_conform: '1' _id: '22406' abstract: - lang: eng text: "It is known that for a uniform morphic sequence \U0001D496 =⟨\U0001D462\U0001D45B⟩∞\r\n\U0001D45B=0 and an algebraic number \U0001D6FD such that |\U0001D6FD| >1, the number [[\U0001D496]]\U0001D6FD :=∑∞\r\n\U0001D45B=0(\U0001D462\U0001D45B/\U0001D6FD\U0001D45B) either lies in ℚ⁡(\U0001D6FD) or is transcendental. In this paper, we show a similar rational–transcendental dichotomy for sequences defined by irreducible Pisot morphisms on binary alphabets. Subject to the Pisot conjecture (an irreducible Pisot morphism has pure discrete spectrum), we generalise the latter result to arbitrary finite alphabets. In certain cases, we are able to show transcendence of [[\U0001D496]]\U0001D6FD outright. In particular, for \U0001D458 ≥2, if \U0001D496 is the k-Bonacci word, then [[\U0001D496]]\U0001D6FD is transcendental." acknowledgement: "We thank the anonymous referee for identifying an error in an earlier\r\nversion of the paper. We gratefully acknowledge support from UKRI Frontier Research\r\nGrant EP/X033813/1, ERC grant DynAMiCS (101167561) and DFG grant 389792660 as\r\npart of TRR 248. J.O. is also affiliated with Keble College, Oxford as an Emmy Network\r\nfellow." article_processing_charge: Yes (in subscription journal) article_type: original arxiv: 1 author: - first_name: Pavol full_name: Kebis, Pavol id: 2e0132b3-4e98-11ef-b275-cf7281c2802a last_name: Kebis - first_name: FLORIAN full_name: LUCA, FLORIAN last_name: LUCA - first_name: JOEL full_name: OUAKNINE, JOEL last_name: OUAKNINE - first_name: ANDREW full_name: SCOONES, ANDREW last_name: SCOONES - first_name: JAMES full_name: WORRELL, JAMES last_name: WORRELL citation: ama: Kebis P, LUCA F, OUAKNINE J, SCOONES A, WORRELL J. Transcendence for Pisot morphic words over an algebraic base. Ergodic Theory and Dynamical Systems. 2026:1-22. doi:10.1017/etds.2026.10324 apa: Kebis, P., LUCA, F., OUAKNINE, J., SCOONES, A., & WORRELL, J. (2026). Transcendence for Pisot morphic words over an algebraic base. Ergodic Theory and Dynamical Systems. Cambridge University Press. https://doi.org/10.1017/etds.2026.10324 chicago: Kebis, Pavol, FLORIAN LUCA, JOEL OUAKNINE, ANDREW SCOONES, and JAMES WORRELL. “Transcendence for Pisot Morphic Words over an Algebraic Base.” Ergodic Theory and Dynamical Systems. Cambridge University Press, 2026. https://doi.org/10.1017/etds.2026.10324. ieee: P. Kebis, F. LUCA, J. OUAKNINE, A. SCOONES, and J. WORRELL, “Transcendence for Pisot morphic words over an algebraic base,” Ergodic Theory and Dynamical Systems. Cambridge University Press, pp. 1–22, 2026. ista: Kebis P, LUCA F, OUAKNINE J, SCOONES A, WORRELL J. 2026. Transcendence for Pisot morphic words over an algebraic base. Ergodic Theory and Dynamical Systems., 1–22. mla: Kebis, Pavol, et al. “Transcendence for Pisot Morphic Words over an Algebraic Base.” Ergodic Theory and Dynamical Systems, Cambridge University Press, 2026, pp. 1–22, doi:10.1017/etds.2026.10324. short: P. Kebis, F. LUCA, J. OUAKNINE, A. SCOONES, J. WORRELL, Ergodic Theory and Dynamical Systems (2026) 1–22. das_tickbox: '0' date_created: 2026-07-27T05:53:25Z date_published: 2026-07-10T00:00:00Z date_updated: 2026-08-03T06:17:50Z day: '10' ddc: - '000' department: - _id: ToHe - _id: GradSch doi: 10.1017/etds.2026.10324 external_id: arxiv: - '2405.05279' fulldoi: https://doi.org/10.1017/etds.2026.10324 has_accepted_license: '1' keyword: - balanced-pair algorithm - Cobham’s conjecture - k-Bonacci words - Pisot conjecture - subspace theorem language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1017/etds.2026.10324 mathsc: - 11J81 - 37B10 - 11J87 month: '07' oa: 1 oa_version: Published Version page: 1-22 publication: Ergodic Theory and Dynamical Systems publication_identifier: eissn: - 1469-4417 issn: - 0143-3857 publication_status: epub_ahead publisher: Cambridge University Press quality_controlled: '1' researchdata_availability: no scopus_import: '1' status: public supplementarymaterial: no title: Transcendence for Pisot morphic words over an algebraic base tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2026' ... --- OA_place: repository OA_type: green _id: '22619' abstract: - lang: eng text: Planar germanium is currently the only semiconducting platform where high-coherence spin qubits and proximity-induced superconductivity have each been demonstrated. Recent research into spin qubits in Ge/SiGe heterostructures has focused on increasing the thickness of the SiGe capping layer, reporting improvements in the electrostatic noise levels. Meanwhile, heterostructures with thinner capping layers remain rather unexplored, despite the potential advantages for proximity-induced superconductivity. Here, we study a Ge/SiGe heterostructure with a thin SiGe cap d - 4nm and investigate its viability to host low-noise quantum dots. To keep the thermal budget compatible with superconducting layers, low-temperature oxide deposition processes were developed and implemented for the gate dielectrics. The charge noise level of the fabricated devices is estimated to be 1.8  +- 1.0 μeV/ square HZ⁠, comparable to devices fabricated on shallow heterostructures (⁠ d - 20nm⁠) with high-temperature deposited oxides. Low charge noise levels, together with the straightforward integration of superconductors, make this heterostructure an attractive platform for prototyping hybrid semiconducting–superconducting devices. acknowledged_ssus: - _id: M-Shop - _id: NanoFab acknowledgement: 'We sincerely thank Nick van Loo, Greg Mazur, Dhananjay Joshi, and Srijit Goswami for their inputs on low-temperature HfOx deposition; Matias Urdampilleta and Daniel Jirovec for discussions; and Kristen Léonard for the careful reading of the manuscript. This research was supported by the Scientific Service Units of ISTA through resources provided by the Miba Machine Shop and the Nanofabrication facility. The authors acknowledge support from the NOMIS Foundation; the European Innovation Council Pathfinder Grant No. 101115315 (QuKiT); the FWF Projects with DOI:10.55776/F86, DOI:10.55776/PAT7682124, and DOI:10.55776/P36507; and the HE-MSCA-PF project with DOI:10.3030/101150858. ICN2 is supported by the Severo Ochoa Program from Spanish MCIN/AEI (Grant No.: CEX2021-001214-S) and is funded by the CERCA Program/Generalitat de Catalunya. ICN2 acknowledges funding from Generalitat de Catalunya (No. 2021SGR00457). We acknowledge support from the CSIC Interdisciplinary Thematic Platform (PTI+) on Quantum Technologies (PTI-QTEP+).' article_number: '033505' article_processing_charge: No article_type: original arxiv: 1 author: - first_name: Maksim full_name: Borovkov, Maksim id: 1fd0975f-8b61-11ed-b69e-d149334f28c5 last_name: Borovkov - first_name: Yona A full_name: Schell, Yona A id: fe39122d-06bb-11ec-a33b-9e22b40e40a5 last_name: Schell - first_name: Dina full_name: Sokolova, Dina id: 2d2d62f8-72f0-11ef-b75a-8ec3e8a60032 last_name: Sokolova - first_name: Kevin Etienne Robert full_name: Roux, Kevin Etienne Robert id: 53f93ea2-803f-11ed-ab7e-b283135794ef last_name: Roux - first_name: Paul full_name: Falthansl-Scheinecker, Paul id: 85b43b21-15b2-11ec-abd3-e2c252cc2285 last_name: Falthansl-Scheinecker - first_name: Giorgio full_name: Fabris, Giorgio id: 298cf6f3-1ff6-11ee-9fa6-d94cfa0b3352 last_name: Fabris - first_name: Devashish C full_name: Shah, Devashish C id: de191434-4e7e-11ef-bf4b-9a056fc19fc3 last_name: Shah orcid: 0009-0007-5829-7707 - first_name: Jaime full_name: Saez Mollejo, Jaime id: e0390f72-f6e0-11ea-865d-862393336714 last_name: Saez Mollejo - first_name: Rodolfo full_name: Previdi, Rodolfo id: bc4ea1dc-00ce-11ec-8a4e-b325ca8b9876 last_name: Previdi - first_name: Inas full_name: Taha, Inas last_name: Taha - first_name: Aziz full_name: Genç, Aziz last_name: Genç - first_name: Jordi full_name: Arbiol, Jordi last_name: Arbiol - first_name: Stefano full_name: Calcaterra, Stefano last_name: Calcaterra - first_name: Afonso De Cerdeira full_name: Oliveira, Afonso De Cerdeira last_name: Oliveira - first_name: Daniel full_name: Chrastina, Daniel last_name: Chrastina - first_name: Giovanni full_name: Isella, Giovanni last_name: Isella - first_name: Anton full_name: Bubis, Anton id: 1f6212b5-f795-11ec-9c0c-de4780302890 last_name: Bubis - first_name: Georgios full_name: Katsaros, Georgios id: 38DB5788-F248-11E8-B48F-1D18A9856A87 last_name: Katsaros orcid: 0000-0001-8342-202X citation: ama: Borovkov M, Schell YA, Sokolova D, et al. Low-noise quantum dots in ultra-shallow Ge/SiGe heterostructures for prototyping hybrid semiconducting–superconducting devices. Applied Physics Letters. 2026;129(3). doi:10.1063/5.0333142 apa: Borovkov, M., Schell, Y. A., Sokolova, D., Roux, K. E. R., Falthansl-Scheinecker, P., Fabris, G., … Katsaros, G. (2026). Low-noise quantum dots in ultra-shallow Ge/SiGe heterostructures for prototyping hybrid semiconducting–superconducting devices. Applied Physics Letters. AIP Publishing. https://doi.org/10.1063/5.0333142 chicago: Borovkov, Maksim, Yona A Schell, Dina Sokolova, Kevin Etienne Robert Roux, Paul Falthansl-Scheinecker, Giorgio Fabris, Devashish C Shah, et al. “Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting–Superconducting Devices.” Applied Physics Letters. AIP Publishing, 2026. https://doi.org/10.1063/5.0333142. ieee: M. Borovkov et al., “Low-noise quantum dots in ultra-shallow Ge/SiGe heterostructures for prototyping hybrid semiconducting–superconducting devices,” Applied Physics Letters, vol. 129, no. 3. AIP Publishing, 2026. ista: Borovkov M, Schell YA, Sokolova D, Roux KER, Falthansl-Scheinecker P, Fabris G, Shah DC, Saez Mollejo J, Previdi R, Taha I, Genç A, Arbiol J, Calcaterra S, Oliveira ADC, Chrastina D, Isella G, Bubis A, Katsaros G. 2026. Low-noise quantum dots in ultra-shallow Ge/SiGe heterostructures for prototyping hybrid semiconducting–superconducting devices. Applied Physics Letters. 129(3), 033505. mla: Borovkov, Maksim, et al. “Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting–Superconducting Devices.” Applied Physics Letters, vol. 129, no. 3, 033505, AIP Publishing, 2026, doi:10.1063/5.0333142. short: M. Borovkov, Y.A. Schell, D. Sokolova, K.E.R. Roux, P. Falthansl-Scheinecker, G. Fabris, D.C. Shah, J. Saez Mollejo, R. Previdi, I. Taha, A. Genç, J. Arbiol, S. Calcaterra, A.D.C. Oliveira, D. Chrastina, G. Isella, A. Bubis, G. Katsaros, Applied Physics Letters 129 (2026). corr_author: '1' das_tickbox: '1' dataavailabilitystatement: The data that support the findings of this study are openly available in Institute of Science and Technology repository at http://doi.org/10.15479/AT-ISTA-22242, Ref. 50. date_created: 2026-08-02T22:01:53Z date_published: 2026-07-20T00:00:00Z date_updated: 2026-08-03T11:08:39Z day: '20' department: - _id: GeKa - _id: GradSch - _id: NanoFab doi: 10.1063/5.0333142 external_id: arxiv: - '2602.21363' fulldoi: https://doi.org/10.1063/5.0333142 intvolume: ' 129' issue: '3' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.48550/arXiv.2602.21363 month: '07' oa: 1 oa_version: Preprint project: - _id: bdc2ca30-d553-11ed-ba76-cf164a5bb811 grant_number: '101115315' name: Quantum bits with Kitaev Transmons - _id: 34a66131-11ca-11ed-8bc3-a31681c6b03e grant_number: F8606 name: 'Center for Correlated Quantum Materials and Solid State Quantum Systems: Conventional and unconventional topological superconductors' - _id: 5b9e579c-ab3d-11f0-914f-88754c5b5a3f grant_number: PAT 7682124 name: Superconducting spin qubits in planar Ge - _id: bd8bd29e-d553-11ed-ba76-f0070d4b237a grant_number: P36507 name: Merging spin and superconducting qubits in planar Ge - _id: 8ea8abf7-16d5-11f0-9cad-c41e56ec8bb3 grant_number: '101150858' name: Realization and Manipulation of a Planar hybrid superconducting Andreev spin qubit in Germanium publication: Applied Physics Letters publication_identifier: eissn: - 1077-3118 issn: - 0003-6951 publication_status: published publisher: AIP Publishing quality_controlled: '1' related_material: record: - id: '22242' relation: research_data status: public researchdata_availability: yes scopus_import: '1' status: public supplementarymaterial: yes title: Low-noise quantum dots in ultra-shallow Ge/SiGe heterostructures for prototyping hybrid semiconducting–superconducting devices type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 129 year: '2026' ... --- DOAJ_listed: '1' OA_place: publisher OA_type: gold PlanS_conform: '1' _id: '22618' abstract: - lang: eng text: "We use a function field version of the circle method to prove that a positive proportion of elements in \U0001D53D\U0001D45E⁡[\U0001D461] are representable as a sum of three cubes of minimal degree from \U0001D53D\U0001D45E⁡[\U0001D461], assuming a suitable form of the Ratios Conjecture and that char⁡(\U0001D53D\U0001D45E) >3. The analogue of this conjecture for quadratic Dirichlet L-functions is known for large fixed q, via recent developments in homological stability." acknowledgement: While working on this paper the first two authors were supported by FWF grant (DOI 10.55776/P36278) and the third author was supported by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413, and by the National Science and Technology Council Project Grant 114-2115-M-001-010-MY2. article_number: e112 article_processing_charge: Yes article_type: original arxiv: 1 author: - first_name: Timothy D full_name: Browning, Timothy D id: 35827D50-F248-11E8-B48F-1D18A9856A87 last_name: Browning orcid: 0000-0002-8314-0177 - first_name: Jakob full_name: Glas, Jakob id: d6423cba-dc74-11ea-a0a7-ee61689ff5fb last_name: Glas - first_name: Victor full_name: Wang, Victor id: 76096395-aea4-11ed-a680-ab8ebbd3f1b9 last_name: Wang orcid: 0000-0002-0704-7026 citation: ama: Browning TD, Glas J, Wang V. Sums of three cubes over a function field. Forum of Mathematics Sigma. 2026;14. doi:10.1017/fms.2026.10259 apa: Browning, T. D., Glas, J., & Wang, V. (2026). Sums of three cubes over a function field. Forum of Mathematics Sigma. Cambridge University Press. https://doi.org/10.1017/fms.2026.10259 chicago: Browning, Timothy D, Jakob Glas, and Victor Wang. “Sums of Three Cubes over a Function Field.” Forum of Mathematics Sigma. Cambridge University Press, 2026. https://doi.org/10.1017/fms.2026.10259. ieee: T. D. Browning, J. Glas, and V. Wang, “Sums of three cubes over a function field,” Forum of Mathematics Sigma, vol. 14. Cambridge University Press, 2026. ista: Browning TD, Glas J, Wang V. 2026. Sums of three cubes over a function field. Forum of Mathematics Sigma. 14, e112. mla: Browning, Timothy D., et al. “Sums of Three Cubes over a Function Field.” Forum of Mathematics Sigma, vol. 14, e112, Cambridge University Press, 2026, doi:10.1017/fms.2026.10259. short: T.D. Browning, J. Glas, V. Wang, Forum of Mathematics Sigma 14 (2026). corr_author: '1' das_tickbox: '0' date_created: 2026-08-02T22:01:52Z date_published: 2026-07-22T00:00:00Z date_updated: 2026-08-03T12:13:59Z day: '22' ddc: - '500' department: - _id: TiBr - _id: GradSch doi: 10.1017/fms.2026.10259 ec_funded: 1 external_id: arxiv: - '2402.07146' file: - access_level: open_access checksum: e92a762e03f832bdca8c106a9a88ef9b content_type: application/pdf creator: dernst date_created: 2026-08-03T12:12:03Z date_updated: 2026-08-03T12:12:03Z file_id: '22636' file_name: 2026_ForumMathematics_Browning.pdf file_size: 810718 relation: main_file success: 1 file_date_updated: 2026-08-03T12:12:03Z fulldoi: https://doi.org/10.1017/fms.2026.10259 has_accepted_license: '1' intvolume: ' 14' language: - iso: eng month: '07' oa: 1 oa_version: Published Version project: - _id: bd8a4fdc-d553-11ed-ba76-80a0167441a3 grant_number: P36278 name: Rational curves via function field analytic number theory - _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c call_identifier: H2020 grant_number: '101034413' name: 'IST-BRIDGE: International postdoctoral program' publication: Forum of Mathematics Sigma publication_identifier: eissn: - 2050-5094 publication_status: published publisher: Cambridge University Press quality_controlled: '1' researchdata_availability: no scopus_import: '1' status: public supplementarymaterial: no title: Sums of three cubes over a function field tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 14 year: '2026' ... --- OA_place: repository _id: '22242' abstract: - lang: eng text: This deposit contains the data and analysis code accompanying the publication "Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting–Superconducting Devices" (Borovkov et al.). The deposit includes the raw transport and current-noise measurements of three gate-defined quantum-dot devices as QCodes SQLite databases, the master table of the charge-noise (flank-method) analysis with the pointers linking every analyzed PSD trace to the raw data, the toy-model noise simulation datasets behind the supplementary figures, the archived analysis figures (PSD fits and lever-arm extractions), and the Python code reproducing the full analysis and all figures. The code is also maintained at https://github.com/ISTA-Nanoelectronics/noise_paper_public; instructions are provided in the README files. acknowledged_ssus: - _id: M-Shop - _id: NanoFab article_processing_charge: No author: - first_name: Maksim full_name: Borovkov, Maksim id: 1fd0975f-8b61-11ed-b69e-d149334f28c5 last_name: Borovkov citation: ama: Borovkov M. Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices. 2026. doi:10.15479/AT-ISTA-22242 apa: Borovkov, M. (2026). Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices. Institute of Science and Technology Austria. https://doi.org/10.15479/AT-ISTA-22242 chicago: Borovkov, Maksim. “Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices.” Institute of Science and Technology Austria, 2026. https://doi.org/10.15479/AT-ISTA-22242. ieee: M. Borovkov, “Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices.” Institute of Science and Technology Austria, 2026. ista: Borovkov M. 2026. Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices, Institute of Science and Technology Austria, 10.15479/AT-ISTA-22242. mla: Borovkov, Maksim. Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices. Institute of Science and Technology Austria, 2026, doi:10.15479/AT-ISTA-22242. short: M. Borovkov, (2026). contributor: - contributor_type: contact_person first_name: Maksim id: 1fd0975f-8b61-11ed-b69e-d149334f28c5 last_name: Borovkov corr_author: '1' date_created: 2026-07-04T17:32:27Z date_published: 2026-07-04T00:00:00Z date_updated: 2026-08-03T11:08:38Z day: '04' ddc: - '530' department: - _id: GradSch - _id: GeKa doi: 10.15479/AT-ISTA-22242 doi_confirm: '1' file: - access_level: open_access checksum: 2a1ea297e01a7a202a6b144d69a46eef content_type: application/x-zip-compressed creator: mborovko date_created: 2026-07-04T17:28:49Z date_updated: 2026-07-04T17:28:49Z file_id: '22243' file_name: noise_paper_public_deposit.zip file_size: 3082596099 relation: main_file success: 1 file_date_updated: 2026-07-04T17:28:49Z fulldoi: https://doi.org/10.15479/AT-ISTA-22242 has_accepted_license: '1' month: '07' oa: 1 oa_version: Published Version project: - _id: bdc2ca30-d553-11ed-ba76-cf164a5bb811 grant_number: '101115315' name: Quantum bits with Kitaev Transmons - _id: 34a66131-11ca-11ed-8bc3-a31681c6b03e grant_number: F8606 name: 'Center for Correlated Quantum Materials and Solid State Quantum Systems: Conventional and unconventional topological superconductors' - _id: bd8bd29e-d553-11ed-ba76-f0070d4b237a grant_number: P36507 name: Merging spin and superconducting qubits in planar Ge - _id: 8ea8abf7-16d5-11f0-9cad-c41e56ec8bb3 grant_number: '101150858' name: Realization and Manipulation of a Planar hybrid superconducting Andreev spin qubit in Germanium - _id: 5b9e579c-ab3d-11f0-914f-88754c5b5a3f grant_number: PAT 7682124 name: Superconducting spin qubits in planar Ge publisher: Institute of Science and Technology Austria related_material: link: - relation: research_data url: https://github.com/ISTA-Nanoelectronics/noise_paper_public record: - id: '22619' relation: used_in_publication status: public status: public title: Low-Noise Quantum Dots in Ultra-Shallow Ge/SiGe Heterostructures for Prototyping Hybrid Semiconducting-Superconducting Devices tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: research_data user_id: 68b8ca59-c5b3-11ee-8790-cd641c68093d year: '2026' ... --- OA_place: publisher OA_type: hybrid PlanS_conform: '1' _id: '22645' abstract: - lang: eng text: Nanocrystal superlattices are commonly formed by changing concentration, solvent conditions, or particle surface chemistry. Although effective, these approaches alter multiple contributions to the interparticle potential simultaneously, making it difficult to isolate the interactions responsible for ordering or to control assembly in chemically complex environments. Here, we show that oligomeric species present in a nanocrystal reaction medium drive superlattice formation through a depletion mechanism. Using PbTe nanocrystals as a model system, we identify Pb–oleate oligomers in the crude reaction mixture, characterize their solution structure, and quantify their contribution to the interparticle potential, establishing depletion as the dominant short-range interaction governing spontaneous body-centered cubic superlattice formation. We then confirm the depletion origin of ordering by showing that varying depletant concentration predictably shifts the order–disorder boundary and produces a thermally reversible transition between dispersed and ordered states ─ behavior that is inconsistent with van der Waals or ligand-mediated mechanisms but is a direct consequence of depletion control. Having established and validated the mechanism, we demonstrate that the same depletion framework can be deliberately activated in purified dispersions and transferred across nanocrystal systems of different composition and shape, including anisotropic and binary assemblies. These results establish precursor-derived depletion as a general and chemically grounded mechanism for nanocrystal superlattice formation, and show that collective ordering can be programmed through the surrounding medium rather than through particle surface modification. acknowledged_ssus: - _id: EM-Fac - _id: NMR - _id: LifeSc acknowledgement: ISTA and the Werner Siemens Foundation financially supported this work. The Scientific Service Units (SSU) of ISTA supported this research through resources provided by the Electron Microscopy Facility (EMF), NMR Facility, and the Lab Support Facility (LSF). M.E. acknowledges financial support from Deutsche Forschungsgemeinschaft through Collaborative Research Centre 1411. We thank Dr. Tommaso Constanzo and Tobias Kleinhanns for assistance with high-quality electron microscope image acquisition, Dr. Jeonghyun Park for providing NCs, Dr. Mariano Calcabrini for assistance with the NMR study, and Prof. Jonathan De Roo for fruitful discussions. This work benefited from the use of the SasView application, originally developed under NSF award DMR-0520547. SasView contains code developed with funding from the European Union’s Horizon 2020 research and innovation program under the SINE2020 project, grant agreement No. 654000. article_processing_charge: Yes (via OA deal) article_type: original author: - first_name: Seungho full_name: Lee, Seungho id: BB243B88-D767-11E9-B658-BC13E6697425 last_name: Lee orcid: 0000-0002-6962-8598 - first_name: Daniel full_name: Balazs, Daniel id: 302BADF6-85FC-11EA-9E3B-B9493DDC885E last_name: Balazs orcid: 0000-0001-7597-043X - first_name: Aiswarya full_name: Rayaroth Puthiyaveettil, Aiswarya id: 8aceb01b-8972-11ed-ae7b-d5fe53775add last_name: Rayaroth Puthiyaveettil - first_name: Sharona full_name: Horta, Sharona id: 03a7e858-01b1-11ec-8b71-99ae6c4a05bc last_name: Horta - first_name: Carl Peter full_name: Goodrich, Carl Peter id: EB352CD2-F68A-11E9-89C5-A432E6697425 last_name: Goodrich orcid: 0000-0002-1307-5074 - first_name: Michael full_name: Engel, Michael last_name: Engel - first_name: Ihor full_name: Cherniukh, Ihor id: d03b62b2-5976-11ef-a8d7-9525504b7895 last_name: Cherniukh - first_name: Maria full_name: Ibáñez, Maria id: 43C61214-F248-11E8-B48F-1D18A9856A87 last_name: Ibáñez orcid: 0000-0001-5013-2843 citation: ama: Lee S, Balazs D, Rayaroth Puthiyaveettil A, et al. Reaction medium asan architect of nanocrystal superlattices. Journal of the AmericanChemical Society. 2026;148(29):31245-31252. doi:10.1021/jacs.6c07859 apa: Lee, S., Balazs, D., Rayaroth Puthiyaveettil, A., Horta, S., Goodrich, C. P., Engel, M., … Ibáñez, M. (2026). Reaction medium asan architect of nanocrystal superlattices. Journal of the AmericanChemical Society. American Chemical Society. https://doi.org/10.1021/jacs.6c07859 chicago: Lee, Seungho, Daniel Balazs, Aiswarya Rayaroth Puthiyaveettil, Sharona Horta, Carl Peter Goodrich, Michael Engel, Ihor Cherniukh, and Maria Ibáñez. “Reaction Medium Asan Architect of Nanocrystal Superlattices.” Journal of the AmericanChemical Society. American Chemical Society, 2026. https://doi.org/10.1021/jacs.6c07859. ieee: S. Lee et al., “Reaction medium asan architect of nanocrystal superlattices,” Journal of the AmericanChemical Society, vol. 148, no. 29. American Chemical Society, pp. 31245–31252, 2026. ista: Lee S, Balazs D, Rayaroth Puthiyaveettil A, Horta S, Goodrich CP, Engel M, Cherniukh I, Ibáñez M. 2026. Reaction medium asan architect of nanocrystal superlattices. Journal of the AmericanChemical Society. 148(29), 31245–31252. mla: Lee, Seungho, et al. “Reaction Medium Asan Architect of Nanocrystal Superlattices.” Journal of the AmericanChemical Society, vol. 148, no. 29, American Chemical Society, 2026, pp. 31245–52, doi:10.1021/jacs.6c07859. short: S. Lee, D. Balazs, A. Rayaroth Puthiyaveettil, S. Horta, C.P. Goodrich, M. Engel, I. Cherniukh, M. Ibáñez, Journal of the AmericanChemical Society 148 (2026) 31245–31252. corr_author: '1' das_tickbox: '0' date_created: 2026-08-04T06:29:31Z date_published: 2026-07-15T00:00:00Z date_updated: 2026-08-04T06:47:13Z day: '15' ddc: - '540' department: - _id: MaIb - _id: LifeSc - _id: GradSch - _id: CaGo doi: 10.1021/jacs.6c07859 external_id: pmid: - '42532904' file: - access_level: open_access checksum: 063314ae5ac4225ebd4436aa8707d113 content_type: application/pdf creator: dernst date_created: 2026-08-04T06:40:17Z date_updated: 2026-08-04T06:40:17Z file_id: '22646' file_name: 2026_JACS_Lee.pdf file_size: 6564594 relation: main_file success: 1 file_date_updated: 2026-08-04T06:40:17Z fulldoi: https://doi.org/10.1021/jacs.6c07859 has_accepted_license: '1' intvolume: ' 148' issue: '29' language: - iso: eng month: '07' oa: 1 oa_version: Published Version page: 31245-31252 pmid: 1 project: - _id: 9B8F7476-BA93-11EA-9121-9846C619BF3A name: 'HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery' publication: Journal of the AmericanChemical Society publication_identifier: eissn: - 1520-5126 issn: - 0002-7863 publication_status: published publisher: American Chemical Society quality_controlled: '1' researchdata_availability: no scopus_import: '1' status: public supplementarymaterial: yes title: Reaction medium asan architect of nanocrystal superlattices tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 148 year: '2026' ... --- OA_place: publisher OA_type: hybrid PlanS_conform: '1' _id: '22642' abstract: - lang: eng text: Continuously operating atom-light interfaces represent a key prerequisite for steady-state quantum sensors and efficient quantum processors. Here, we demonstrate continuous accumulation of sub-Doppler-cooled atoms in a shallow intracavity dipole trap, realizing this regime. The key ingredient is a light-shift manipulation that creates spatially varying cooling parameters, enabling efficient capture and accumulation of atoms within a cavity mode. Demonstrated with rubidium atoms, a continuous flux from a source cell is funneled through the magneto-optical trap into the cavity mode, where the atoms are cooled and maintained below 10µK in steady state without time-sequenced operation. We characterize the resulting continuously maintained ensemble of millions of atoms and its collective coupling to the cavity field, establishing a route toward continuously operated cavity-QED systems and long-duration atomic and hybrid quantum sensors. acknowledgement: "The authors thank Vyacheslav Li for his earlier contributions to the development of the setup utilized in this work.\r\nThis work was supported by the Institute of Science and Technology Austria (ISTA); E.G. was supported by the European Research Council under Grant No. 101087907 (ERC CoG\r\nQuHAMP)." article_number: '023302' article_processing_charge: Yes (via OA deal) article_type: original arxiv: 1 author: - first_name: Edward-Fulbright full_name: Gheorghita, Edward-Fulbright id: e664a051-133f-11ed-8f02-a05999ad0822 last_name: Gheorghita - first_name: Sebastian full_name: Wald, Sebastian id: 133F200A-B015-11E9-AD41-0EDAE5697425 last_name: Wald orcid: 0000-0002-5869-1604 - first_name: Andrea full_name: Pupić, Andrea id: ef9c50a4-5335-11ef-8b9b-8ce03e6380ed last_name: Pupić - first_name: Onur full_name: Hosten, Onur id: 4C02D85E-F248-11E8-B48F-1D18A9856A87 last_name: Hosten orcid: 0000-0002-2031-204X citation: ama: Gheorghita E-F, Wald S, Pupić A, Hosten O. Continuous accumulation of cold atoms in an optical cavity. Physical Review A. 2026;114(2). doi:10.1103/71f2-sq4p apa: Gheorghita, E.-F., Wald, S., Pupić, A., & Hosten, O. (2026). Continuous accumulation of cold atoms in an optical cavity. Physical Review A. American Physical Society. https://doi.org/10.1103/71f2-sq4p chicago: Gheorghita, Edward-Fulbright, Sebastian Wald, Andrea Pupić, and Onur Hosten. “Continuous Accumulation of Cold Atoms in an Optical Cavity.” Physical Review A. American Physical Society, 2026. https://doi.org/10.1103/71f2-sq4p. ieee: E.-F. Gheorghita, S. Wald, A. Pupić, and O. Hosten, “Continuous accumulation of cold atoms in an optical cavity,” Physical Review A, vol. 114, no. 2. American Physical Society, 2026. ista: Gheorghita E-F, Wald S, Pupić A, Hosten O. 2026. Continuous accumulation of cold atoms in an optical cavity. Physical Review A. 114(2), 023302. mla: Gheorghita, Edward-Fulbright, et al. “Continuous Accumulation of Cold Atoms in an Optical Cavity.” Physical Review A, vol. 114, no. 2, 023302, American Physical Society, 2026, doi:10.1103/71f2-sq4p. short: E.-F. Gheorghita, S. Wald, A. Pupić, O. Hosten, Physical Review A 114 (2026). corr_author: '1' das_tickbox: '1' dataavailabilitystatement: "There are no publicly available research data or software\r\nsupporting this manuscript. Requests for further information\r\nor data should be sent to the authors." date_created: 2026-08-04T05:58:23Z date_published: 2026-08-03T00:00:00Z date_updated: 2026-08-04T06:07:20Z day: '03' ddc: - '530' department: - _id: OnHo - _id: GradSch doi: 10.1103/71f2-sq4p external_id: arxiv: - '2512.14528' file: - access_level: open_access checksum: fdecc394b734b56e1b3b151a816bbe14 content_type: application/pdf creator: dernst date_created: 2026-08-04T06:03:14Z date_updated: 2026-08-04T06:03:14Z file_id: '22643' file_name: 2026_PhysicalReviewA_Gheorghita.pdf file_size: 959463 relation: main_file success: 1 file_date_updated: 2026-08-04T06:03:14Z fulldoi: https://doi.org/10.1103/71f2-sq4p has_accepted_license: '1' intvolume: ' 114' issue: '2' language: - iso: eng month: '08' oa: 1 oa_version: Published Version project: - _id: bdb2a702-d553-11ed-ba76-f12e3e5a3bc6 grant_number: '101087907' name: 'A quantum hybrid of atoms and milligram-scale pendulums: towards gravitational quantum mechanics' publication: Physical Review A publication_identifier: eissn: - 2469-9934 issn: - 2469-9926 publication_status: published publisher: American Physical Society quality_controlled: '1' researchdata_availability: upon request scopus_import: '1' status: public supplementarymaterial: yes title: Continuous accumulation of cold atoms in an optical cavity tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 114 year: '2026' ... --- OA_place: publisher OA_type: hybrid _id: '22647' abstract: - lang: eng text: "Within the plant endomembrane system, the vesicle coat protein clathrin localizes to the plasma membrane (PM) and the trans-Golgi Network/early endosome (TGN/EE). While the role of clathrin in endocytosis at the PM is well established, its function at TGN/EE, presumably in late secretion (trafficking from the TGN/EE to the cell surface) or en route to the vacuole, is debated. Similarly debated are potential homeostatic mechanisms balancing the trafficking routes, especially endocytosis and late secretion.\r\nWe address these questions in Arabidopsis thaliana using conditional silencing of CLATHRIN HEAVY CHAIN (CHC), conditional overexpression of the clathrin uncoating factor AUXILIN-LIKE1, and secretory mutants.\r\nCHC silencing interferes with trafficking of cargoes destined for the apoplast and the PM, supporting a function of clathrin in late secretion. The secretory cargoes become abnormally rerouted from the TGN/EE to the vacuole. Unlike CHC silencing, overexpression of AUXILIN-LIKE1 selectively inhibits clathrin-mediated endocytosis while secretion continues normally at early points of induction. Conversely, secretory mutants exhibit a reduced PM recruitment of clathrin, and variably, of the TPLATE endocytic component.\r\nTogether, our data show a role of clathrin in secretion and suggest secretion as a fundamental trafficking process to which endocytosis is adjusted by a weak homeostatic mechanism." acknowledgement: 'The authors wish to acknowledge Dr. Paweł Baster for cloning PIN1-GFP-2/pDONR221, Ms. Aline Monzer and Dr. Mingyue Li for help with CHC protein level evaluation, Dr. Michał Rychłowski for help with confocal microscopy, Prof. Ari Pekka Mähönen for sharing the p1R4-pUBQ10:XVE plasmid, and Prof. Ying Gu for sharing seeds of the sec5 mutant. M.A. would like to thank Dr. Xixi Zhang and Prof. Sebastian Bednarek for inspiring discussions. This work was supported by the Taif University Researchers Supporting Project, TURSP-HC2022/02 to JF and SA and Austrian Science Fund (FWF): I 3630-B25 to JF. Open Access funding provided by Institute of Science and Technology Austria.' article_number: nph.71454 article_processing_charge: Yes (via OA deal) article_type: original author: - first_name: Maciek full_name: Adamowski, Maciek id: 45F536D2-F248-11E8-B48F-1D18A9856A87 last_name: Adamowski orcid: 0000-0001-6463-5257 - first_name: Adam full_name: Gackowski, Adam last_name: Gackowski - first_name: Ivana full_name: Matijevic, Ivana id: 83c17ce3-15b2-11ec-abd3-f486545870bd last_name: Matijevic - first_name: Saqer S. full_name: Alotaibi, Saqer S. last_name: Alotaibi - first_name: Jiří full_name: Friml, Jiří id: 4159519E-F248-11E8-B48F-1D18A9856A87 last_name: Friml orcid: 0000-0002-8302-7596 citation: ama: Adamowski M, Gackowski A, Matijevic I, Alotaibi SS, Friml J. The role of clathrin in post‐Golgi secretion in plant cells. New Phytologist. 2026. doi:10.1111/nph.71454 apa: Adamowski, M., Gackowski, A., Matijevic, I., Alotaibi, S. S., & Friml, J. (2026). The role of clathrin in post‐Golgi secretion in plant cells. New Phytologist. Wiley. https://doi.org/10.1111/nph.71454 chicago: Adamowski, Maciek, Adam Gackowski, Ivana Matijevic, Saqer S. Alotaibi, and Jiří Friml. “The Role of Clathrin in Post‐Golgi Secretion in Plant Cells.” New Phytologist. Wiley, 2026. https://doi.org/10.1111/nph.71454. ieee: M. Adamowski, A. Gackowski, I. Matijevic, S. S. Alotaibi, and J. Friml, “The role of clathrin in post‐Golgi secretion in plant cells,” New Phytologist. Wiley, 2026. ista: Adamowski M, Gackowski A, Matijevic I, Alotaibi SS, Friml J. 2026. The role of clathrin in post‐Golgi secretion in plant cells. New Phytologist., nph. 71454. mla: Adamowski, Maciek, et al. “The Role of Clathrin in Post‐Golgi Secretion in Plant Cells.” New Phytologist, nph. 71454, Wiley, 2026, doi:10.1111/nph.71454. short: M. Adamowski, A. Gackowski, I. Matijevic, S.S. Alotaibi, J. Friml, New Phytologist (2026). corr_author: '1' das_tickbox: '1' dataavailabilitystatement: 'Original data associated with this study have been deposited in Dataset S1. The accession nos. of A. thaliana genes used in this study are as follows: CHC1 (AT3G11130), CHC2 (AT3G08530), CLC2 (AT2G40060), TPLATE (AT3G01780), AP2A1 (AT5G22770), DRP1C (AT1G14830), GNOM-LIKE1 (AT5G39500), BEN3/BIG2 (AT3G60860), TMK4 (AT3G23750), PIN1 (AT1G73590), AUXILIN-LIKE1 (AT4G12780), AP1M2 (AT1G60780), ECHIDNA (AT1G09330), SEC5A (AT1G76850), SEC5B (AT1G21170), TUB2 (AT5G62690), and PP2AA3 (AT1G13320).' date_created: 2026-08-04T06:48:41Z date_published: 2026-07-20T00:00:00Z date_updated: 2026-08-04T07:58:27Z day: '20' department: - _id: JiFr - _id: MaLo - _id: GradSch doi: 10.1111/nph.71454 external_id: pmid: - '42477503' fulldoi: https://doi.org/10.1111/nph.71454 language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1111/nph.71454 month: '07' oa: 1 oa_version: Published Version pmid: 1 project: - _id: 26538374-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: I03630 name: Molecular mechanisms of endocytic cargo recognition in plants publication: New Phytologist publication_identifier: eissn: - 1469-8137 issn: - 0028-646X publication_status: epub_ahead publisher: Wiley quality_controlled: '1' researchdata_availability: yes scopus_import: '1' status: public supplementarymaterial: yes title: The role of clathrin in post‐Golgi secretion in plant cells type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2026' ... --- OA_place: publisher OA_type: hybrid PlanS_conform: '1' _id: '22639' abstract: - lang: eng text: We present an abstract Dyson expansion for perturbations that are merely relatively form-bounded, and apply it to the polaron problem. For a large class of polaron-type models, including the Fröhlich and Nelson models, we prove that the vacuum expectation value of the heat semi-group is a completely monotone function of the square of the total momentum. Consequently, the ground-state energy is a concave function of the square of the momentum, a result recently proved for the Fröhlich model in [14] using a probabilistic approach via Wiener integrals. acknowledgement: Open access funding provided by Institute of Science and Technology (IST Austria). article_number: '87' article_processing_charge: Yes (via OA deal) article_type: original arxiv: 1 author: - first_name: Davide full_name: Desio, Davide id: ea10a57b-23f6-11ef-9085-80d8596d52ef last_name: Desio orcid: 0000-0001-9840-3809 - first_name: Robert full_name: Seiringer, Robert id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 citation: ama: Desio D, Seiringer R. Dyson expansion for form-bounded perturbations and applications to the polaron problem. Letters in Mathematical Physics. 2026;116(4). doi:10.1007/s11005-026-02107-2 apa: Desio, D., & Seiringer, R. (2026). Dyson expansion for form-bounded perturbations and applications to the polaron problem. Letters in Mathematical Physics. Springer Nature. https://doi.org/10.1007/s11005-026-02107-2 chicago: Desio, Davide, and Robert Seiringer. “Dyson Expansion for Form-Bounded Perturbations and Applications to the Polaron Problem.” Letters in Mathematical Physics. Springer Nature, 2026. https://doi.org/10.1007/s11005-026-02107-2. ieee: D. Desio and R. Seiringer, “Dyson expansion for form-bounded perturbations and applications to the polaron problem,” Letters in Mathematical Physics, vol. 116, no. 4. Springer Nature, 2026. ista: Desio D, Seiringer R. 2026. Dyson expansion for form-bounded perturbations and applications to the polaron problem. Letters in Mathematical Physics. 116(4), 87. mla: Desio, Davide, and Robert Seiringer. “Dyson Expansion for Form-Bounded Perturbations and Applications to the Polaron Problem.” Letters in Mathematical Physics, vol. 116, no. 4, 87, Springer Nature, 2026, doi:10.1007/s11005-026-02107-2. short: D. Desio, R. Seiringer, Letters in Mathematical Physics 116 (2026). corr_author: '1' das_tickbox: '0' date_created: 2026-08-03T13:21:14Z date_published: 2026-07-17T00:00:00Z date_updated: 2026-08-04T05:57:21Z day: '17' ddc: - '510' department: - _id: RoSe - _id: GradSch doi: 10.1007/s11005-026-02107-2 external_id: arxiv: - '2512.13443' file: - access_level: open_access checksum: 1b90ff7da16b9604d6fe2c6281493456 content_type: application/pdf creator: dernst date_created: 2026-08-04T05:55:58Z date_updated: 2026-08-04T05:55:58Z file_id: '22641' file_name: 2026_LettersMathPhysics_Desio.pdf file_size: 371840 relation: main_file success: 1 file_date_updated: 2026-08-04T05:55:58Z fulldoi: https://doi.org/10.1007/s11005-026-02107-2 has_accepted_license: '1' intvolume: ' 116' issue: '4' language: - iso: eng month: '07' oa: 1 oa_version: Published Version publication: Letters in Mathematical Physics publication_identifier: issn: - 1573-0530 publication_status: published publisher: Springer Nature quality_controlled: '1' researchdata_availability: no scopus_import: '1' status: public supplementarymaterial: no title: Dyson expansion for form-bounded perturbations and applications to the polaron problem tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 116 year: '2026' ... --- OA_place: publisher OA_type: hybrid PlanS_conform: '1' _id: '22644' abstract: - lang: eng text: "We analyze the average behavior of various arithmetic functions at the values of degree \U0001D451 binary forms ordered by height, with probability 1. This approach yields averaged versions of the Chowla conjecture and the Bateman–Horn conjecture for random binary forms. Furthermore, we show that the rational Hasse principle holds for almost all Châtelet varieties defined by a fixed norm form of degree \U0001D452 and by varying binary forms of fixed degree \U0001D451, provided \U0001D452 divides \U0001D451. This proves an average version of a conjecture of Colliot-Thélène." acknowledgement: I am deeply grateful to my advisor Tim Browning for suggesting this problem and for the many valuable discussions that shaped this work. I would also like to thank Efthymios Sofos, Matteo Verzobio, and Shuntaro Yamagishi for discussions and insights that contributed to this paper. I am also very grateful to the anonymous referee for their careful reading and for the considerable effort they put into improving the manuscript. article_processing_charge: Yes (via OA deal) article_type: original arxiv: 1 author: - first_name: Yijie full_name: Diao, Yijie id: 7b7eb4ca-eb2c-11ec-b98b-accec0b20c3b last_name: Diao orcid: 0000-0002-4989-5330 citation: ama: Diao Y. Liouville function, von Mangoldt function, and norm forms at random binary forms. Glasgow Mathematical Journal. 2026:1-34. doi:10.1017/s0017089526101074 apa: Diao, Y. (2026). Liouville function, von Mangoldt function, and norm forms at random binary forms. Glasgow Mathematical Journal. Cambridge University Press. https://doi.org/10.1017/s0017089526101074 chicago: Diao, Yijie. “Liouville Function, von Mangoldt Function, and Norm Forms at Random Binary Forms.” Glasgow Mathematical Journal. Cambridge University Press, 2026. https://doi.org/10.1017/s0017089526101074. ieee: Y. Diao, “Liouville function, von Mangoldt function, and norm forms at random binary forms,” Glasgow Mathematical Journal. Cambridge University Press, pp. 1–34, 2026. ista: Diao Y. 2026. Liouville function, von Mangoldt function, and norm forms at random binary forms. Glasgow Mathematical Journal., 1–34. mla: Diao, Yijie. “Liouville Function, von Mangoldt Function, and Norm Forms at Random Binary Forms.” Glasgow Mathematical Journal, Cambridge University Press, 2026, pp. 1–34, doi:10.1017/s0017089526101074. short: Y. Diao, Glasgow Mathematical Journal (2026) 1–34. corr_author: '1' das_tickbox: '0' date_created: 2026-08-04T06:15:04Z date_published: 2026-07-21T00:00:00Z date_updated: 2026-08-04T06:28:01Z day: '21' ddc: - '500' department: - _id: TiBr - _id: GradSch doi: 10.1017/s0017089526101074 external_id: arxiv: - '2506.18065' fulldoi: https://doi.org/10.1017/s0017089526101074 has_accepted_license: '1' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1017/S0017089526101074 mathsc: - 11N32 - 11N37 - 11D57 - 11G35 month: '07' oa: 1 oa_version: Published Version page: 1-34 publication: Glasgow Mathematical Journal publication_identifier: eissn: - 1469-509X issn: - 0017-0895 publication_status: epub_ahead publisher: Cambridge University Press quality_controlled: '1' researchdata_availability: no scopus_import: '1' status: public supplementarymaterial: no title: Liouville function, von Mangoldt function, and norm forms at random binary forms tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2026' ... --- OA_place: publisher OA_type: gold _id: '21923' abstract: - lang: eng text: "The appearance of simulated natural phenomena heavily depends on the way surfaces are textured. However, applying texture maps to dynamic deformable surfaces presents a significant challenge, due to ever-shifting differences in length scales involved. When these surfaces move and advect the texture along with them, their final appearance degrades as deformed regions dramatically distort their texture map. Modifications to the texture directly at the pixel level in response to the deformation may introduce ghosting artifacts and look unnatural. In the real world, the appearance of surface details on a deforming material changes through the interplay of physical processes such as rupturing, exposure of internal structure, or wrinkling. Motivated by these behaviors, in this work we explore how physical principles can guide the texturing methods based on the measure of surface deformation.\r\nWe present two novel wave-based procedural texturing algorithms which reproduce common physical properties like advection and self-similarity, enabling the plausible animation of deforming objects with extreme texture map distortions. Our algorithms are fully procedural, require no actual physics simulation, and store no state or history of deformation besides the input UV map, making them highly parallelizable on the GPU and efficient enough for real-time applications. We show the versatility of the method by animating physical phenomena with extreme deformations such as flowing lava, stretching putty and outpouring sludge." acknowledged_ssus: - _id: ScienComp acknowledgement: "We thank the anonymous reviewers for their helpful comments, the members of the Visual Computing Group at ISTA for their feedback. We also thank Jonathan Gagnon for their help with running the Lapped Textures codes and SideFX for the Houdini Education software licenses.\r\nImages in Fig. 2 by Kisoulou and Vultured on Unsplash, Michal Jarmoluk and Public Domain Pictures from Pixabay and Hawai‘i Volcanoes NPS on flickr. This research was supported by the Scientific Service Units (SSU) of ISTA through resources provided by Scientific Computing and was funded in part by the European Union (ERC-2021-COG 101045083 CoDiNA)." article_number: '154' article_processing_charge: Yes article_type: original author: - first_name: Aleksei full_name: Kalinov, Aleksei id: 44b7120e-eb97-11eb-a6c2-e1557aa81d02 last_name: Kalinov orcid: 0000-0003-2189-3904 - first_name: Mickaël full_name: Ly, Mickaël id: 6340d7f0-b48d-11eb-b10d-b7487e71d9f1 last_name: Ly - first_name: Christian full_name: Hafner, Christian id: 400429CC-F248-11E8-B48F-1D18A9856A87 last_name: Hafner - first_name: Christopher J full_name: Wojtan, Christopher J id: 3C61F1D2-F248-11E8-B48F-1D18A9856A87 last_name: Wojtan orcid: 0000-0001-6646-5546 citation: ama: Kalinov A, Ly M, Hafner C, Wojtan C. Physics-inspired procedural texturing of extremely deformable surfaces. ACM Transactions on Graphics. 2026;45(4). doi:10.1145/3811353 apa: 'Kalinov, A., Ly, M., Hafner, C., & Wojtan, C. (2026). Physics-inspired procedural texturing of extremely deformable surfaces. ACM Transactions on Graphics. Los Angeles, CA, United States: Association for Computing Machinery. https://doi.org/10.1145/3811353' chicago: Kalinov, Aleksei, Mickaël Ly, Christian Hafner, and Chris Wojtan. “Physics-Inspired Procedural Texturing of Extremely Deformable Surfaces.” ACM Transactions on Graphics. Association for Computing Machinery, 2026. https://doi.org/10.1145/3811353. ieee: A. Kalinov, M. Ly, C. Hafner, and C. Wojtan, “Physics-inspired procedural texturing of extremely deformable surfaces,” ACM Transactions on Graphics, vol. 45, no. 4. Association for Computing Machinery, 2026. ista: Kalinov A, Ly M, Hafner C, Wojtan C. 2026. Physics-inspired procedural texturing of extremely deformable surfaces. ACM Transactions on Graphics. 45(4), 154. mla: Kalinov, Aleksei, et al. “Physics-Inspired Procedural Texturing of Extremely Deformable Surfaces.” ACM Transactions on Graphics, vol. 45, no. 4, 154, Association for Computing Machinery, 2026, doi:10.1145/3811353. short: A. Kalinov, M. Ly, C. Hafner, C. Wojtan, ACM Transactions on Graphics 45 (2026). conference: end_date: 2026-07-23 location: Los Angeles, CA, United States name: 'SIGGRAPH: International Conference and Exhibition on Computer Graphics and Interactive Techniques' start_date: 2026-07-19 corr_author: '1' das_tickbox: '0' date_created: 2026-05-29T13:25:16Z date_published: 2026-07-01T00:00:00Z date_updated: 2026-08-04T09:07:44Z day: '01' ddc: - '006' department: - _id: GradSch - _id: ChWo doi: 10.1145/3811353 file: - access_level: open_access checksum: ea165bf731ddd3045f83878dcb833672 content_type: video/mp4 creator: akalinov date_created: 2026-05-29T13:19:33Z date_updated: 2026-05-29T13:19:33Z file_id: '21924' file_name: tog454-article154-supplemental.mp4 file_size: 77337231 relation: main_file success: 1 - access_level: open_access checksum: 6274cfb15ea5ba7324b74afc7b0d9629 content_type: video/mp4 creator: akalinov date_created: 2026-05-29T13:19:37Z date_updated: 2026-05-29T13:19:37Z file_id: '21925' file_name: tog454-article154-video.mp4 file_size: 226633977 relation: main_file success: 1 - access_level: open_access checksum: 9d41b322a7876be9a3311017b9973183 content_type: application/pdf creator: akalinov date_created: 2026-05-29T13:19:33Z date_updated: 2026-05-29T13:19:33Z file_id: '21926' file_name: tog454-article154-supplemental.pdf file_size: 6793867 relation: main_file success: 1 - access_level: open_access checksum: 51bc60d2de867fbfa570652dec7993b4 content_type: application/pdf creator: akalinov date_created: 2026-05-29T13:19:36Z date_updated: 2026-05-29T13:19:36Z file_id: '21927' file_name: tog454-article154-main-1.pdf file_size: 84173392 relation: main_file success: 1 file_date_updated: 2026-05-29T13:19:37Z fulldoi: https://doi.org/10.1145/3811353 has_accepted_license: '1' intvolume: ' 45' issue: '4' keyword: - Procedural animation language: - iso: eng month: '07' oa: 1 oa_version: Published Version project: - _id: 34bc2376-11ca-11ed-8bc3-9a3b3961a088 grant_number: '101045083' name: Computational Discovery of Numerical Algorithms for Animation and Simulation of Natural Phenomena publication: ACM Transactions on Graphics publication_identifier: issn: - 0730-0301 publication_status: published publisher: Association for Computing Machinery quality_controlled: '1' related_material: link: - description: News on ISTA website relation: press_release url: https://ista.ac.at/en/news/infinite-deformation-and-shape-computation/ researchdata_availability: no scopus_import: '1' status: public supplementarymaterial: yes title: Physics-inspired procedural texturing of extremely deformable surfaces tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd volume: 45 year: '2026' ... --- OA_place: publisher OA_type: hybrid PlanS_conform: '1' _id: '22295' abstract: - lang: eng text: 'Despite the functional diversity of over 100 causal genes1,2,3, phenotypic convergence across models may reveal common neurobiological processes in autism spectrum disorder (ASD). Here we profiled 251 samples from 11 monogenic mouse models of ASD using single-nucleus multi-omic sequencing across three developmental stages, both sexes and two brain regions. Despite genetic heterogeneity, ASD-linked mutations converged on perturbations of the radial glial cell lineage. These alterations reflect a transient developmental delay rather than lasting lineage misspecification and resolve by postnatal stages. Molecularly, the largest transcriptional differences emerged in neurons at early postnatal stages. These changes included downregulation of synaptic and ion channel-related genes, consistent with homeostatic adaptation or delayed maturation. Network analysis showed molecular convergence across models within each developmental stage, suggesting that diverse mutations linked to ASD impinge on common, stage-specific processes. Convergence becomes less pronounced by postnatal day 14, highlighting the dynamic nature of ASD-associated changes. Cross-genotype heterogeneity is superimposed on stage-specific effects. Electrophysiology corroborated this pattern: mutants generally showed altered neuronal excitability and synaptic properties with model-specific nuances. Our study also highlighted sex-specific gene expression alterations, with female mice often displaying larger effect sizes than male mice. Together, our findings provide a comprehensive view of developmental cellular and molecular dynamics across models of ASD.' acknowledged_ssus: - _id: Bio - _id: LifeSc acknowledgement: We thank F. Freeman, V. Voronin and M. Ladron de Guevara for technical assistance; A. Stichelberger and S. Liegenfeld for the management of our animal colony; M. Schunn, C. Gold and the Preclinical Facility team for technical assistance; C. Jansen and the Scientific Computing Facility for bioinformatics support and technical assistance; the Biomedical Sequencing Facility at CeMM for assistance with next-generation sequencing; and J. Lin and T. Krausgruber in the laboratory of C. Bock for support with flow cytometry; J. Kirchner for illustrating the multi-omics approach depicted in Fig. 1; and all members of the laboratory of G.N. for their support and discussions. This study was supported by the Scientific Service Units of ISTA through resources provided by the Imaging & Optics Facility and the Laboratory Support Facility. Bulk RNA-seq was performed by the Next Generation Sequencing Facility at Vienna BioCenter Core Facilities, member of the Vienna BioCenter. This work was supported by a European Research Council Consolidator Grant (PR1028ERC02), by SFARI (PR1028SIM02) and by the Austrian Science Fund (PE1028W1232 and PR1028FG1803) to G.N. Open access funding provided by Institute of Science and Technology (IST Austria). article_processing_charge: Yes (via OA deal) article_type: original author: - first_name: Lena A full_name: Schwarz, Lena A id: 29A8453C-F248-11E8-B48F-1D18A9856A87 last_name: Schwarz - first_name: Christoph full_name: Dotter, Christoph id: 4C66542E-F248-11E8-B48F-1D18A9856A87 last_name: Dotter orcid: 0000-0002-9033-9096 - first_name: Sergey full_name: Isaev, Sergey last_name: Isaev - first_name: Michela full_name: Lisi, Michela id: 39383c1b-d3eb-11ef-8d6c-c8cdf4e10c8c last_name: Lisi - first_name: Daniel full_name: Malzl, Daniel last_name: Malzl - first_name: Christoph full_name: Büschl, Christoph id: 2a8c054c-0913-11ee-9159-f8ef515809ed last_name: Büschl - first_name: Sabrina full_name: Ladstätter, Sabrina last_name: Ladstätter - first_name: Bárbara full_name: Oliveira, Bárbara id: 3B03AA1A-F248-11E8-B48F-1D18A9856A87 last_name: Oliveira - first_name: Matteo full_name: Barel, Matteo id: 8959927b-2236-11ed-bd6e-ea83d94ade0e last_name: Barel - first_name: Bernadette full_name: Basilico, Bernadette id: 36035796-5ACA-11E9-A75E-7AF2E5697425 last_name: Basilico orcid: 0000-0003-1843-3173 - first_name: Chaitanya full_name: Chintaluri, Chaitanya id: BA06AFEE-A4BA-11EA-AE5C-14673DDC885E last_name: Chintaluri orcid: 0000-0003-4252-1608 - first_name: Sarah full_name: Gorkiewicz, Sarah id: f141a35d-15a9-11ec-9fb2-fef6becc7b6f last_name: Gorkiewicz - first_name: Mohammad full_name: Goudarzi, Mohammad id: 3384113A-F248-11E8-B48F-1D18A9856A87 last_name: Goudarzi - first_name: Tereza full_name: Belinova, Tereza id: 0bf89b6a-d28b-11eb-8bd6-f43768e4d368 last_name: Belinova - first_name: Stephan full_name: Reichl, Stephan last_name: Reichl - first_name: Gintarė full_name: Sendžikaitė, Gintarė id: dd6d52f2-c50d-11eb-9548-bcf0ff82b344 last_name: Sendžikaitė - first_name: Satish full_name: Arcot Jayaram, Satish id: b0bbee33-09f7-11eb-909c-8b358058d28a last_name: Arcot Jayaram orcid: 0000-0002-2479-2669 - first_name: Peter full_name: Koppensteiner, Peter id: 3B8B25A8-F248-11E8-B48F-1D18A9856A87 last_name: Koppensteiner orcid: 0000-0002-3509-1948 - first_name: Christoph M full_name: Sommer, Christoph M id: 4DF26D8C-F248-11E8-B48F-1D18A9856A87 last_name: Sommer orcid: 0000-0003-1216-9105 - first_name: Tim P full_name: Vogels, Tim P id: CB6FF8D2-008F-11EA-8E08-2637E6697425 last_name: Vogels orcid: 0000-0003-3295-6181 - first_name: Jörg full_name: Menche, Jörg last_name: Menche - first_name: Igor full_name: Adameyko, Igor last_name: Adameyko - first_name: Peter Vasili full_name: Kharchenko, Peter Vasili id: 0095641e-7eb7-11f1-8665-aec51a2ab5e0 last_name: Kharchenko - first_name: Christoph full_name: Bock, Christoph last_name: Bock - first_name: Gaia full_name: Novarino, Gaia id: 3E57A680-F248-11E8-B48F-1D18A9856A87 last_name: Novarino orcid: 0000-0002-7673-7178 citation: ama: Schwarz LA, Dotter C, Isaev S, et al. Cortical development dynamics across autism spectrum disorder mouse models. Nature. 2026. doi:10.1038/s41586-026-10679-1 apa: Schwarz, L. A., Dotter, C., Isaev, S., Lisi, M., Malzl, D., Büschl, C., … Novarino, G. (2026). Cortical development dynamics across autism spectrum disorder mouse models. Nature. Springer Nature. https://doi.org/10.1038/s41586-026-10679-1 chicago: Schwarz, Lena A, Christoph Dotter, Sergey Isaev, Michela Lisi, Daniel Malzl, Christoph Büschl, Sabrina Ladstätter, et al. “Cortical Development Dynamics across Autism Spectrum Disorder Mouse Models.” Nature. Springer Nature, 2026. https://doi.org/10.1038/s41586-026-10679-1. ieee: L. A. Schwarz et al., “Cortical development dynamics across autism spectrum disorder mouse models,” Nature. Springer Nature, 2026. ista: Schwarz LA, Dotter C, Isaev S, Lisi M, Malzl D, Büschl C, Ladstätter S, Oliveira B, Barel M, Basilico B, Chintaluri C, Gorkiewicz S, Goudarzi M, Belinova T, Reichl S, Sendžikaitė G, Arcot Jayaram S, Koppensteiner P, Sommer CM, Vogels TP, Menche J, Adameyko I, Kharchenko PV, Bock C, Novarino G. 2026. Cortical development dynamics across autism spectrum disorder mouse models. Nature. mla: Schwarz, Lena A., et al. “Cortical Development Dynamics across Autism Spectrum Disorder Mouse Models.” Nature, Springer Nature, 2026, doi:10.1038/s41586-026-10679-1. short: L.A. Schwarz, C. Dotter, S. Isaev, M. Lisi, D. Malzl, C. Büschl, S. Ladstätter, B. Oliveira, M. Barel, B. Basilico, C. Chintaluri, S. Gorkiewicz, M. Goudarzi, T. Belinova, S. Reichl, G. Sendžikaitė, S. Arcot Jayaram, P. Koppensteiner, C.M. Sommer, T.P. Vogels, J. Menche, I. Adameyko, P.V. Kharchenko, C. Bock, G. Novarino, Nature (2026). corr_author: '1' dataavailabilitystatement: Single-nucleus multiomics data are available from the Gene Expression Omnibus (GSE328363). The mm10 reference genome was used for the alignment (refdata-cellranger-arc-mm10-2020-A-2.0.0, obtained from https://cf.10xgenomics.com/supp/cell-arc/refdata-cellranger-arc-mm10-2020-A-2.0.0.tar.gz). Single-cell data can be accessed and visualized through a CELLxGENE database (https://adameykolab.hifo.meduniwien.ac.at/cellxgene_public/filecrawl/.2026_Nature_Schwarz). Source data are provided with this paper. Scripts and analyses that support the main findings of this study are accessible in a GitHub repository (https://git.ista.ac.at/research-sofware/mouseome). date_created: 2026-07-13T09:47:21Z date_published: 2026-06-17T00:00:00Z date_updated: 2026-08-04T09:29:55Z day: '17' ddc: - '570' department: - _id: AnKi - _id: GaNo - _id: TiVo - _id: ScienComp - _id: GradSch - _id: Bio - _id: PreCl doi: 10.1038/s41586-026-10679-1 external_id: pmid: - '42310454' fulldoi: https://doi.org/10.1038/s41586-026-10679-1 has_accepted_license: '1' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1038/s41586-026-10679-1 month: '06' oa: 1 oa_version: Published Version pmid: 1 project: - _id: 34ba8964-11ca-11ed-8bc3-e15864e7e9a6 grant_number: '101044865' name: Toward an understanding of the brain interstitial system and the extracellular proteome in health and autism spectrum disorders - _id: 9B91375C-BA93-11EA-9121-9846C619BF3A grant_number: '707964' name: Critical windows and reversibility of ASD associated with mutations in chromatin remodelers - _id: 2548AE96-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: W1232 name: Molecular Drug Targets - _id: ebb38b5d-77a9-11ec-83b8-a42e08120a88 grant_number: FG1803 49015 name: Neurobiology of anxiety in autism spectrum disorders publication: Nature publication_identifier: eissn: - 1476-4687 issn: - 0028-0836 publication_status: epub_ahead publisher: Springer Nature quality_controlled: '1' related_material: link: - description: News on ISTA website relation: press_release url: https://ista.ac.at/en/news/patterns-in-genetic-chaos/ researchdata_availability: yes scopus_import: '1' status: public supplementarymaterial: yes title: Cortical development dynamics across autism spectrum disorder mouse models tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd year: '2026' ... --- OA_place: publisher OA_type: hybrid PlanS_conform: '1' _id: '22268' abstract: - lang: eng text: AlphaFold3 predicts highly accurate protein structures from sequence but tends to collapse to a single dominant conformation, even when the underlying structure is inherently heterogeneous. Moreover, its predictions are oblivious to experimental conditions that can alter local sequence conformation. In this work, we show that AlphaFold3 can be guided to match data obtained by nuclear magnetic resonance (NMR) spectroscopy, X-ray crystallography and cryogenic electron microscopy (cryo-EM) experiments and combinations thereof. Our approach can also incorporate data that explicitly report on dynamics, such as site-resolved order parameters. We demonstrate that this methodology generates compact structural ensembles whose ensemble-averaged observables agree with experiment, with fewer distance restraint violations than traditionally resolved NMR structures and with unmodeled alternate conformations uncovered in electron density. This methodology paves the way for experimentally aware predictive models that generate structural ensembles consistent with the measurements, potentially over multiple modalities, and that can be further refined toward thermodynamically grounded ensembles by incorporating energetics. acknowledgement: A. Marx acknowledges the financial support of the Helmsley Fellowships Program for Sustainability and Health. A.M.B. and P.S. are supported by the Institute of Science and Technology Austria Internal Project Call grant Generative Protein NMR. S.V. was supported in part by funding from the Eric and Wendy Schmidt Center at the Broad Institute of MIT and Harvard. Open access funding provided by Institute of Science and Technology (IST Austria). article_processing_charge: Yes (via OA deal) article_type: original author: - first_name: Sai A full_name: Maddipatla, Sai A id: e957f5e5-91c9-11f0-a95f-e090f66ecb4d last_name: Maddipatla - first_name: Nadav E full_name: Sellam, Nadav E id: ef280fe0-91c9-11f0-a95f-8dea3f5bc513 last_name: Sellam - first_name: Meital I full_name: Bojan, Meital I id: 11d88cf5-91ca-11f0-a95f-edf9f08f47b7 last_name: Bojan - first_name: Vova full_name: Masalitin, Vova id: ff7958eb-91c9-11f0-a95f-f3bf65828cf6 last_name: Masalitin - first_name: Sanketh full_name: Vedula, Sanketh last_name: Vedula - first_name: Paul full_name: Schanda, Paul id: 7B541462-FAF6-11E9-A490-E8DFE5697425 last_name: Schanda orcid: 0000-0002-9350-7606 - first_name: Ailie full_name: Marx, Ailie last_name: Marx - first_name: Alexander full_name: Bronstein, Alexander id: 58f3726e-7cba-11ef-ad8b-e6e8cb3904e6 last_name: Bronstein orcid: 0000-0001-9699-8730 citation: ama: Maddipatla SA, Sellam NE, Bojan MI, et al. Experiment-guided AlphaFold3 resolves measurement-consistent protein ensembles. Nature Biotechnology. 2026. doi:10.1038/s41587-026-03166-5 apa: Maddipatla, S. A., Sellam, N. E., Bojan, M. I., Masalitin, V., Vedula, S., Schanda, P., … Bronstein, A. M. (2026). Experiment-guided AlphaFold3 resolves measurement-consistent protein ensembles. Nature Biotechnology. Springer Nature. https://doi.org/10.1038/s41587-026-03166-5 chicago: Maddipatla, Sai A, Nadav E Sellam, Meital I Bojan, Vova Masalitin, Sanketh Vedula, Paul Schanda, Ailie Marx, and Alex M. Bronstein. “Experiment-Guided AlphaFold3 Resolves Measurement-Consistent Protein Ensembles.” Nature Biotechnology. Springer Nature, 2026. https://doi.org/10.1038/s41587-026-03166-5. ieee: S. A. Maddipatla et al., “Experiment-guided AlphaFold3 resolves measurement-consistent protein ensembles,” Nature Biotechnology. Springer Nature, 2026. ista: Maddipatla SA, Sellam NE, Bojan MI, Masalitin V, Vedula S, Schanda P, Marx A, Bronstein AM. 2026. Experiment-guided AlphaFold3 resolves measurement-consistent protein ensembles. Nature Biotechnology. mla: Maddipatla, Sai A., et al. “Experiment-Guided AlphaFold3 Resolves Measurement-Consistent Protein Ensembles.” Nature Biotechnology, Springer Nature, 2026, doi:10.1038/s41587-026-03166-5. short: S.A. Maddipatla, N.E. Sellam, M.I. Bojan, V. Masalitin, S. Vedula, P. Schanda, A. Marx, A.M. Bronstein, Nature Biotechnology (2026). corr_author: '1' das_tickbox: '1' dataavailabilitystatement: All structures and metrics reported in this paper are openly available on Harvard Dataverse - https://doi.org/10.7910/DVN/PLYUHN. All code is openly available on GitHub (https://github.com/sai-advaith/guided_alphafold); the version used for this paper (version 0.9.1) is permanently archived on Zenodo https://doi.org/10.5281/zenodo.17307005 date_created: 2026-07-12T22:02:19Z date_published: 2026-06-29T00:00:00Z date_updated: 2026-08-04T09:25:18Z day: '29' ddc: - '570' department: - _id: PaSc - _id: AlBr - _id: GradSch doi: 10.1038/s41587-026-03166-5 external_id: pmid: - '42374114' fulldoi: https://doi.org/10.1038/s41587-026-03166-5 has_accepted_license: '1' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1038/s41587-026-03166-5 month: '06' oa: 1 oa_version: Published Version pmid: 1 publication: Nature Biotechnology publication_identifier: eissn: - 1546-1696 issn: - 1087-0156 publication_status: epub_ahead publisher: Springer Nature quality_controlled: '1' related_material: link: - description: News on ISTA website relation: press_release url: https://ista.ac.at/en/news/toward-experiment-guided-alphafold/ researchdata_availability: yes scopus_import: '1' status: public supplementarymaterial: yes title: Experiment-guided AlphaFold3 resolves measurement-consistent protein ensembles tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: ba8df636-2132-11f1-aed0-ed93e2281fdd year: '2026' ... --- OA_place: publisher _id: '22334' abstract: - lang: eng text: "Characterizing protein dynamics at the atomic level is essential for our understanding of biological mechanisms. Whether it is to facilitate metabolite transport, catalyze reactions, transmit signals, or regulate metabolism – proteins are constantly in motion and sample multiple conformational states to fulfill their function. Nuclear magnetic resonance (NMR) spectroscopy is particularly well suited to elucidate the dynamics of biomolecules on their complex free-energy landscape. In particular, solid-state magic-angle spinning (MAS) NMR enables the study of large molecular assemblies, protein crystals, or insoluble proteins at atomic resolution without an inherent molecular size limitation. MAS NMR experiments to probe protein dynamics are extremely versatile and sensitive to motional timescales from picoseconds to seconds. Over the past decades, technological advances, developments in experimental design, and new isotope-labeling approaches have further expanded the possibilities of this technique and significantly improved the accuracy of the determined motional parameters.\r\nFunctionally important sites of proteins often contain aromatic residues. Their side-chain motions have therefore long served as valuable indicators of mechanistically relevant dynamics in NMR studies. In this thesis, site-specifically labeled aromatic residues act as sensitive reporters for MAS NMR studies of protein dynamics. The first part addresses how different environments impact side-chain motion by probing ring flips of phenylalanines and tyrosines in crystalline proteins and amyloid fibrils. It provides important insights for the analysis of dynamics obtained in non-native protein environments and emphasizes the complex factors that determine the timescale of internal dynamics. In the second part, the focus shifts towards methodological questions regarding the investigation of protein dynamics by 19F MAS NMR. The fluorine nucleus exhibits promising characteristics for NMR studies but also presents significant challenges, which is why the full methodological potential of 19F MAS NMR has not been fully realized yet. This work demonstrates that paramagnetic doping can considerably reduce the measurement time and improve the sensitivity of fluorinated samples. Finally, 19F MAS NMR is evaluated as a tool for studying protein side-chain dynamics on the example of tryptophans. The results illustrate the challenges in analyzing such experiments and lay the foundation for further development of 19F MAS NMR relaxation studies.\r\nTaken together, this thesis highlights the potential of combining specific isotope labeling, MAS NMR, and complementary methods such as crystallography and computational simulations to elucidate internal protein dynamics. The further development of such integrative approaches will be crucial to improving our understanding of complex mechanisms and protein function.\r\n" acknowledged_ssus: - _id: LifeSc - _id: NMR acknowledgement: "During the work on this thesis, I was the recipient of a DOC Fellowship of the Austrian\r\nAcademy of Sciences at the Institute of Science and Technology Austria (grant no. PR10660EAW01)." alternative_title: - ISTA Thesis article_processing_charge: No author: - first_name: Lea Marie full_name: Becker, Lea Marie id: 36336939-eb97-11eb-a6c2-c83f1214ca79 last_name: Becker orcid: 0000-0002-6401-5151 citation: ama: Becker LM. Exploring protein dynamics using specific labeling approaches for solid-state MAS NMR. 2026. doi:10.15479/AT-ISTA-22334 apa: Becker, L. M. (2026). Exploring protein dynamics using specific labeling approaches for solid-state MAS NMR. Institute of Science and Technology Austria. https://doi.org/10.15479/AT-ISTA-22334 chicago: Becker, Lea Marie. “Exploring Protein Dynamics Using Specific Labeling Approaches for Solid-State MAS NMR.” Institute of Science and Technology Austria, 2026. https://doi.org/10.15479/AT-ISTA-22334. ieee: L. M. Becker, “Exploring protein dynamics using specific labeling approaches for solid-state MAS NMR,” Institute of Science and Technology Austria, 2026. ista: Becker LM. 2026. Exploring protein dynamics using specific labeling approaches for solid-state MAS NMR. Institute of Science and Technology Austria. mla: Becker, Lea Marie. Exploring Protein Dynamics Using Specific Labeling Approaches for Solid-State MAS NMR. Institute of Science and Technology Austria, 2026, doi:10.15479/AT-ISTA-22334. short: L.M. Becker, Exploring Protein Dynamics Using Specific Labeling Approaches for Solid-State MAS NMR, Institute of Science and Technology Austria, 2026. corr_author: '1' das_tickbox: '1' date_created: 2026-07-14T08:08:51Z date_published: 2026-07-13T00:00:00Z date_updated: 2026-08-04T09:32:45Z day: '13' ddc: - '572' degree_awarded: PhD department: - _id: GradSch - _id: PaSc doi: 10.15479/AT-ISTA-22334 doi_confirm: '1' file: - access_level: closed checksum: 8b85114eff543916c0e1445cd2189555 content_type: application/zip creator: lbecker date_created: 2026-07-16T09:17:08Z date_updated: 2026-07-16T09:17:08Z file_id: '22346' file_name: 2026_Becker_Lea_source_files.zip file_size: 99472908 relation: source_file - access_level: open_access checksum: 6c526862bc6dbd1e4c80ecb34580bc58 content_type: application/pdf creator: lbecker date_created: 2026-07-16T09:17:05Z date_updated: 2026-07-16T09:17:05Z file_id: '22347' file_name: 2026_Becker_Lea_Thesis.pdf file_size: 74647289 relation: main_file success: 1 file_date_updated: 2026-07-16T09:17:08Z fulldoi: https://doi.org/10.15479/AT-ISTA-22334 has_accepted_license: '1' language: - iso: eng month: '07' oa: 1 oa_version: Published Version page: '205' project: - _id: 7be609c4-9f16-11ee-852c-85015ce2b9b0 grant_number: '26777' name: Exploring protein dynamics by solid-state MAS NMR through specific labeling approaches publication_identifier: isbn: - 978-3-99078-084-8 issn: - 2663-337X publication_status: published publisher: Institute of Science and Technology Austria related_material: record: - id: '12675' relation: part_of_dissertation status: public - id: '21777' relation: part_of_dissertation status: public - id: '12114' relation: part_of_dissertation status: public - id: '22105' relation: part_of_dissertation status: public status: public supervisor: - first_name: Paul full_name: Schanda, Paul id: 7B541462-FAF6-11E9-A490-E8DFE5697425 last_name: Schanda orcid: 0000-0002-9350-7606 title: Exploring protein dynamics using specific labeling approaches for solid-state MAS NMR tmp: image: /images/cc_by_nc_nd.png legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0) short: CC BY-NC-ND (4.0) type: dissertation user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9 year: '2026' ... --- _id: '21145' abstract: - lang: eng text: 'Protein conformational energy landscapes are shaped not only by intramolecular interactions but also by their environment. In protein crystals and protein-protein complexes, intermolecular contacts alter this energy landscape, but the exact nature of this alteration is difficult to decipher. Understanding how the crystal lattice affects protein dynamics is crucial for crystallography-based studies of motion, yet its influence on collective motions remains unclear. Aromatic ring flips in the hydrophobic core represent sensitive probes of such dynamics. Here, we compare the kinetics of aromatic ring flips in the protein GB1 in crystals, in complex with its binding partner IgG, and in solution, combining advanced isotope labeling with quantitative NMR methods. We show that rings in the core flip nearly a thousand times less frequently in crystals than in solution. Enhanced-sampling molecular dynamics simulations, based on a new crystal structure, reproduce these elevated barriers and reveal how the crystal restrains motions. ' acknowledged_ssus: - _id: NMR - _id: LifeSc acknowledgement: "We thank Nikolai R. Skrynnikov and Olga O. Lebedenko (St. Petersburg) for insightful discussions and for performing exploratory MD simulations. We are grateful to Tobias Schubeis (Lyon) for advice with GB1 crystallization, and Rebecca Schmid for initial crystallization trials.\r\nWe thank Sebastian Falkner for assistance with constructing the structural model of the IgG:GB1 complex.\r\nThis research was supported by the Scientific Service Units (SSU) of Institute of Science and Technology Austria (ISTA) through resources provided by the Nuclear Magnetic Resonance and the Lab Support Facilities. We thank Petra Rovó and Margarita Valhondo Falcón for excellent support of the NMR facility.\r\nLea M. Becker is recipient of a DOC fellowship of the Austrian Academy of Sciences at the Institute of Science and Technology Austria (grant no. PR10660EAW01). Christophe Chipot acknowledges the European Research Council (grant project 101097272 ``MilliInMicro'') and the Métropole du Grand Nancy (grant project ``ARC''). BM07-FIP2 is supported by the French ANR PIA3 (France 2030) EquipEx+ project MAGNIFIX under grant agreement ANR-21-ESRE-0011." article_processing_charge: No author: - first_name: Lea Marie full_name: Becker, Lea Marie id: 36336939-eb97-11eb-a6c2-c83f1214ca79 last_name: Becker orcid: 0000-0002-6401-5151 - first_name: Paul full_name: Schanda, Paul id: 7B541462-FAF6-11E9-A490-E8DFE5697425 last_name: Schanda orcid: 0000-0002-9350-7606 - first_name: Christophe full_name: Chipot, Christophe last_name: Chipot citation: ama: Becker LM, Schanda P, Chipot C. Additional Data for “Aromatic Ring Flips Reveal Reshaping of Protein Dynamics in Crystals and Complexes.” 2026. doi:10.15479/AT-ISTA-21145 apa: Becker, L. M., Schanda, P., & Chipot, C. (2026). Additional Data for “Aromatic Ring Flips Reveal Reshaping of Protein Dynamics in Crystals and Complexes.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT-ISTA-21145 chicago: Becker, Lea Marie, Paul Schanda, and Christophe Chipot. “Additional Data for ‘Aromatic Ring Flips Reveal Reshaping of Protein Dynamics in Crystals and Complexes.’” Institute of Science and Technology Austria, 2026. https://doi.org/10.15479/AT-ISTA-21145. ieee: L. M. Becker, P. Schanda, and C. Chipot, “Additional Data for ‘Aromatic Ring Flips Reveal Reshaping of Protein Dynamics in Crystals and Complexes.’” Institute of Science and Technology Austria, 2026. ista: Becker LM, Schanda P, Chipot C. 2026. Additional Data for ‘Aromatic Ring Flips Reveal Reshaping of Protein Dynamics in Crystals and Complexes’, Institute of Science and Technology Austria, 10.15479/AT-ISTA-21145. mla: Becker, Lea Marie, et al. Additional Data for “Aromatic Ring Flips Reveal Reshaping of Protein Dynamics in Crystals and Complexes.” Institute of Science and Technology Austria, 2026, doi:10.15479/AT-ISTA-21145. short: L.M. Becker, P. Schanda, C. Chipot, (2026). contributor: - contributor_type: researcher first_name: Haohao last_name: Fu - contributor_type: researcher first_name: Benjamin id: 71cda2f3-e604-11ee-a1df-da10587eda3f last_name: Tatman - contributor_type: researcher first_name: Matthias last_name: Dreydoppel - contributor_type: researcher first_name: Anna id: 9fb2a840-89e1-11ee-a8b7-cc5c7ba62471 last_name: Kapitonova - contributor_type: researcher first_name: Daniel id: 302BADF6-85FC-11EA-9E3B-B9493DDC885E last_name: Balazs orcid: 0000-0001-7597-043X - contributor_type: researcher first_name: Ulrich last_name: Weininger - contributor_type: researcher first_name: Sylvain last_name: Engilberge corr_author: '1' date_created: 2026-02-05T13:54:39Z date_published: 2026-02-09T00:00:00Z date_updated: 2026-08-04T09:32:45Z day: '09' ddc: - '572' department: - _id: GradSch - _id: PaSc doi: 10.15479/AT-ISTA-21145 file: - access_level: open_access checksum: 02a419cce8cea450bc952f35488d2df5 content_type: text/plain creator: lbecker date_created: 2026-02-05T13:52:37Z date_updated: 2026-02-05T13:52:37Z file_id: '21146' file_name: README.txt file_size: 4263 relation: table_of_contents - access_level: open_access checksum: b0b82b1aa73985b0b308a3fa52d21aea content_type: application/zip creator: lbecker date_created: 2026-02-05T13:52:41Z date_updated: 2026-02-05T13:52:41Z file_id: '21147' file_name: Research_Data.zip file_size: 50647107 relation: main_file success: 1 file_date_updated: 2026-02-05T13:52:41Z fulldoi: https://doi.org/10.15479/AT-ISTA-21145 has_accepted_license: '1' month: '02' oa: 1 oa_version: Published Version project: - _id: 7be609c4-9f16-11ee-852c-85015ce2b9b0 grant_number: '26777' name: Exploring protein dynamics by solid-state MAS NMR through specific labeling approaches publisher: Institute of Science and Technology Austria related_material: record: - id: '20641' relation: earlier_version status: public - id: '22105' relation: used_in_publication status: public status: public title: Additional Data for "Aromatic Ring Flips Reveal Reshaping of Protein Dynamics in Crystals and Complexes" tmp: image: /images/cc_by_nc.png legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0) short: CC BY-NC (4.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2026' ... --- DOAJ_listed: '1' OA_place: publisher OA_type: diamond PlanS_conform: '1' _id: '22663' abstract: - lang: eng text: The detection of strong, large-scale magnetic fields at the surfaces of the oldest white dwarfs might point toward a hidden internal magnetic field slowly rising to the surface. In addition, strong magnetic fields have recently been measured through asteroseismology in the radiative interiors of red giant stars, the progenitors of white dwarfs. To investigate the potential connection between these observations, we revisited the fossil field framework using asteroseismic detections to constrain the strength of such magnetic fields as red giants evolve into the white dwarf stage. We assumed that the magnetic field was either created during the core convection on the main sequence or that it fills the radiative interior as the star evolves on the red giant branch. From these initial conditions, we evolved the magnetic flux, allowing for magnetic diffusion along the evolution of a modeled 1.5 M⊙ star. We find that measured field strengths in red giants attributed to the hydrogen-burning shell are compatible with the field amplitudes and emergence timescales of magnetized white dwarfs. On the contrary, magnetic fields generated solely from a convective-core dynamo on the main sequence and detectable on the red giant branch would be buried too deep in the star and would not match the breakout timescales or the field strengths of magnetic white dwarfs. Therefore, for us to connect magnetic fields observed along the late evolution of stars via a fossil field we would need to find a broadly magnetized internal radiative zone on the red giant branch. acknowledgement: "The authors thank the referee for their helpful and constructive report, which has significantly enhanced the quality of the manuscript.\r\nThe authors thank I. Caiazzo, L. Ferrario, and L. Buchele for very useful discussions. L. Barrault, L. Bugnet, and L. Einramhof gratefully acknowledge support from the European Research Council (ERC) under the Horizon Europe\r\nprogramme (Calcifer; Starting Grant agreement N◦101165631). L. Barrault\r\nacknowledges the support of the Austrian Academy of Sciences through the Doctoral Fellowship Programme (DOC) of the Austrian Academy of Sciences 27648.\r\nWhile partially funded by the European Union, views and opinions expressed\r\nare, however, those of the authors only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union\r\nnor the granting authority can be held responsible for them." article_number: L14 article_processing_charge: No article_type: original arxiv: 1 author: - first_name: Lukas full_name: Einramhof, Lukas id: f1497a1a-72ef-11ef-b75a-fd877bbf6e8c last_name: Einramhof - first_name: Lisa Annabelle full_name: Bugnet, Lisa Annabelle id: d9edb345-f866-11ec-9b37-d119b5234501 last_name: Bugnet orcid: 0000-0003-0142-4000 - first_name: L. M. full_name: Calcaferro, L. M. last_name: Calcaferro - first_name: Lucas full_name: Barrault, Lucas id: 4471a8fd-32c1-11ee-a9a4-fb670d398f64 last_name: Barrault - first_name: S. B. full_name: Das, S. B. last_name: Das citation: ama: Einramhof L, Bugnet LA, Calcaferro LM, Barrault L, Das SB. Magneto-archeology of white dwarfs. Astronomy & Astrophysics. 2026;708. doi:10.1051/0004-6361/202659069 apa: Einramhof, L., Bugnet, L. A., Calcaferro, L. M., Barrault, L., & Das, S. B. (2026). Magneto-archeology of white dwarfs. Astronomy & Astrophysics. EDP Sciences. https://doi.org/10.1051/0004-6361/202659069 chicago: Einramhof, Lukas, Lisa Annabelle Bugnet, L. M. Calcaferro, Lucas Barrault, and S. B. Das. “Magneto-Archeology of White Dwarfs.” Astronomy & Astrophysics. EDP Sciences, 2026. https://doi.org/10.1051/0004-6361/202659069. ieee: L. Einramhof, L. A. Bugnet, L. M. Calcaferro, L. Barrault, and S. B. Das, “Magneto-archeology of white dwarfs,” Astronomy & Astrophysics, vol. 708. EDP Sciences, 2026. ista: Einramhof L, Bugnet LA, Calcaferro LM, Barrault L, Das SB. 2026. Magneto-archeology of white dwarfs. Astronomy & Astrophysics. 708, L14. mla: Einramhof, Lukas, et al. “Magneto-Archeology of White Dwarfs.” Astronomy & Astrophysics, vol. 708, L14, EDP Sciences, 2026, doi:10.1051/0004-6361/202659069. short: L. Einramhof, L.A. Bugnet, L.M. Calcaferro, L. Barrault, S.B. Das, Astronomy & Astrophysics 708 (2026). corr_author: '1' das_tickbox: '1' dataavailabilitystatement: We used MESA version 24.08.1. All inlists and relevant files are available on Zenodo at https://doi.org/10.5281/zenodo.19232789 date_created: 2026-08-10T07:53:32Z date_published: 2026-04-01T00:00:00Z date_updated: 2026-08-11T05:49:20Z day: '01' ddc: - '520' department: - _id: LiBu - _id: GradSch doi: 10.1051/0004-6361/202659069 external_id: arxiv: - '2601.15203' file: - access_level: open_access checksum: 61edee776603d7b879b06b3ea8d2bc89 content_type: application/pdf creator: dernst date_created: 2026-08-11T05:46:02Z date_updated: 2026-08-11T05:46:02Z file_id: '22671' file_name: 2026_AstronomyAstrophysics_Einramhof.pdf file_size: 3739424 relation: main_file success: 1 file_date_updated: 2026-08-11T05:46:02Z fulldoi: https://doi.org/10.1051/0004-6361/202659069 has_accepted_license: '1' intvolume: ' 708' language: - iso: eng month: '04' oa: 1 oa_version: Published Version project: - _id: 914d8549-16d5-11f0-9cad-bbe6324c93a9 grant_number: '101165631' name: 'Unveiling the mysteries of stellar dynamics: a pioneering journey in magnetoasteroseismology' - _id: 5b62812b-ab3d-11f0-914f-8f3a9cdb4af7 grant_number: '27648' name: Unveiling the structure and dynamics of the deep convective core - radiative zone boundary throughout stellar evolution publication: Astronomy & Astrophysics publication_identifier: eissn: - 1432-0746 issn: - 0004-6361 publication_status: published publisher: EDP Sciences quality_controlled: '1' researchdata_availability: yes scopus_import: '1' status: public supplementarymaterial: yes title: Magneto-archeology of white dwarfs tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 708 year: '2026' ... --- OA_place: publisher _id: '22626' acknowledgement: 'This thesis and the publications within, were financially supported by the Institute of Science and Technology Austria and the Werner Siemens Foundation under the project “High Thermoelectric Materials: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery”.' alternative_title: - ISTA Thesis article_processing_charge: No author: - first_name: Christine full_name: Fiedler, Christine id: bd3fceba-dc74-11ea-a0a7-c17f71817366 last_name: Fiedler citation: ama: Fiedler C. Mechanistic insight into solution-processed p-type tin chalcogenides as a basis for designing their n-type analogs. 2026. doi:10.15479/AT-ISTA-22626 apa: Fiedler, C. (2026). Mechanistic insight into solution-processed p-type tin chalcogenides as a basis for designing their n-type analogs. Institute of Science and Technology Austria. https://doi.org/10.15479/AT-ISTA-22626 chicago: Fiedler, Christine. “Mechanistic Insight into Solution-Processed p-Type Tin Chalcogenides as a Basis for Designing Their n-Type Analogs.” Institute of Science and Technology Austria, 2026. https://doi.org/10.15479/AT-ISTA-22626. ieee: C. Fiedler, “Mechanistic insight into solution-processed p-type tin chalcogenides as a basis for designing their n-type analogs,” Institute of Science and Technology Austria, 2026. ista: Fiedler C. 2026. Mechanistic insight into solution-processed p-type tin chalcogenides as a basis for designing their n-type analogs. Institute of Science and Technology Austria. mla: Fiedler, Christine. Mechanistic Insight into Solution-Processed p-Type Tin Chalcogenides as a Basis for Designing Their n-Type Analogs. Institute of Science and Technology Austria, 2026, doi:10.15479/AT-ISTA-22626. short: C. Fiedler, Mechanistic Insight into Solution-Processed p-Type Tin Chalcogenides as a Basis for Designing Their n-Type Analogs, Institute of Science and Technology Austria, 2026. corr_author: '1' date_created: 2026-08-03T07:55:16Z date_published: 2026-08-05T00:00:00Z date_updated: 2026-08-11T12:39:15Z day: '05' ddc: - '540' - '546' - '530' degree_awarded: PhD department: - _id: GradSch - _id: MaIb doi: 10.15479/AT-ISTA-22626 doi_confirm: '1' file: - access_level: closed checksum: 4f357f3c0f5ee3d679dd0395dbafc4bb content_type: application/vnd.openxmlformats-officedocument.wordprocessingml.document creator: cfiedler date_created: 2026-08-07T09:10:56Z date_updated: 2026-08-07T10:02:41Z file_id: '22659' file_name: 2026_Fiedler_Christine_Thesis.docx file_size: 625541367 relation: source_file - access_level: closed checksum: 69784d2e7b9ef3d3a0fbe134f3bba089 content_type: application/pdf creator: cfiedler date_created: 2026-08-07T09:10:45Z date_updated: 2026-08-07T10:16:07Z embargo: 2027-02-07 embargo_to: open_access file_id: '22660' file_name: 2026_Fiedler_Christine_Thesis.pdf file_size: 16646551 relation: main_file file_date_updated: 2026-08-07T10:16:07Z fulldoi: https://doi.org/10.15479/AT-ISTA-22626 has_accepted_license: '1' language: - iso: eng month: '08' oa_version: Published Version page: '141' project: - _id: 9B8F7476-BA93-11EA-9121-9846C619BF3A name: 'HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery' publication_identifier: isbn: - 978-3-99078-086-2 issn: - 2663-337X publication_status: published publisher: Institute of Science and Technology Austria related_material: record: - id: '12237' relation: part_of_dissertation status: public - id: '17124' relation: part_of_dissertation status: public - id: '17052' relation: part_of_dissertation status: public status: public supervisor: - first_name: Maria full_name: Ibáñez, Maria id: 43C61214-F248-11E8-B48F-1D18A9856A87 last_name: Ibáñez orcid: 0000-0001-5013-2843 title: Mechanistic insight into solution-processed p-type tin chalcogenides as a basis for designing their n-type analogs tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: dissertation user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9 year: '2026' ... --- OA_place: publisher OA_type: gold _id: '22299' abstract: - lang: eng text: The depth poset of a filtered Lefschetz complex reflects the dependencies between the cancellations of different shallow birth-death pairs. Using the fast algorithms for computing the depth poset in [Edelsbrunner et al., 2026] and for updating the persistence diagram under transpositions in [Cohen-Steiner et al., 2006], we give a complete case analysis of how transpositions of cells in the filter affect the depth poset. In addition, we present statistics on the depth poset for random point data and its sensitivity to the transpositions that occur in random straight-line homotopies. acknowledgement: "The authors thank Jakub Leśkiewicz and Bartosz Furmanek for discussions\r\nthat helped improve the paper. Herbert Edelsbrunner: DFG Collaborative Research Center TRR 109, Austrian Science\r\nFund (FWF), grant no. I 02979-N35\r\nMichał Lipiński: European Union’s Horizon 2020 research and innovation programme under the\r\nMarie Skłodowska-Curie Grant Agreement No. 101034413\r\nMarian Mrozek: Polish National Science Center under Opus Grant 2019/35/B/ST1/00874 and Opus\r\nGrant 2025/57/B/ST1/00550" alternative_title: - LIPIcs article_number: 41:1-41:18 article_processing_charge: Yes arxiv: 1 author: - first_name: Herbert full_name: Edelsbrunner, Herbert id: 3FB178DA-F248-11E8-B48F-1D18A9856A87 last_name: Edelsbrunner orcid: 0000-0002-9823-6833 - first_name: Michał full_name: Lipiński, Michał id: dfffb474-4317-11ee-8f5c-fe3fc95a425e last_name: Lipiński orcid: 0000-0001-9789-9750 - first_name: Marian full_name: Mrozek, Marian last_name: Mrozek orcid: 0000-0002-0619-6417 - first_name: Manuel full_name: Soriano Trigueros, Manuel id: 15ebd7cf-15bf-11ee-aebd-bb4bb5121ea8 last_name: Soriano Trigueros orcid: 0000-0003-2449-1433 - first_name: Fedor full_name: Zimin, Fedor id: afd27eda-91c1-11f0-aad8-c6edbec24c04 last_name: Zimin citation: ama: 'Edelsbrunner H, Lipiński M, Mrozek M, Soriano Trigueros M, Zimin F. The depth poset under transpositions in the filter. In: 42nd International Symposium on Computational Geometry. Vol 367. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2026. doi:10.4230/LIPICS.SOCG.2026.41' apa: 'Edelsbrunner, H., Lipiński, M., Mrozek, M., Soriano Trigueros, M., & Zimin, F. (2026). The depth poset under transpositions in the filter. In 42nd International Symposium on Computational Geometry (Vol. 367). New Brunswick, NJ, United States: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPICS.SOCG.2026.41' chicago: Edelsbrunner, Herbert, Michał Lipiński, Marian Mrozek, Manuel Soriano Trigueros, and Fedor Zimin. “The Depth Poset under Transpositions in the Filter.” In 42nd International Symposium on Computational Geometry, Vol. 367. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026. https://doi.org/10.4230/LIPICS.SOCG.2026.41. ieee: H. Edelsbrunner, M. Lipiński, M. Mrozek, M. Soriano Trigueros, and F. Zimin, “The depth poset under transpositions in the filter,” in 42nd International Symposium on Computational Geometry, New Brunswick, NJ, United States, 2026, vol. 367. ista: 'Edelsbrunner H, Lipiński M, Mrozek M, Soriano Trigueros M, Zimin F. 2026. The depth poset under transpositions in the filter. 42nd International Symposium on Computational Geometry. SoCG: Symposium on Computational Geometry, LIPIcs, vol. 367, 41:1-41:18.' mla: Edelsbrunner, Herbert, et al. “The Depth Poset under Transpositions in the Filter.” 42nd International Symposium on Computational Geometry, vol. 367, 41:1-41:18, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026, doi:10.4230/LIPICS.SOCG.2026.41. short: H. Edelsbrunner, M. Lipiński, M. Mrozek, M. Soriano Trigueros, F. Zimin, in:, 42nd International Symposium on Computational Geometry, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2026. conference: end_date: 2026-06-05 location: New Brunswick, NJ, United States name: 'SoCG: Symposium on Computational Geometry' start_date: 2026-06-02 corr_author: '1' das_tickbox: '0' date_created: 2026-07-13T09:56:38Z date_published: 2026-05-27T00:00:00Z date_updated: 2026-08-12T09:02:56Z day: '27' ddc: - '500' department: - _id: HeEd - _id: GradSch doi: 10.4230/LIPICS.SOCG.2026.41 ec_funded: 1 external_id: arxiv: - '2511.21961' file: - access_level: open_access checksum: 9dfb96ee66985c724b499b0e5888dc8e content_type: application/pdf creator: dernst date_created: 2026-07-14T06:08:05Z date_updated: 2026-07-14T06:08:05Z file_id: '22329' file_name: 2026_LIPIcSSoCG_Edelsbrunner.pdf file_size: 2902144 relation: main_file success: 1 file_date_updated: 2026-07-14T06:08:05Z fulldoi: https://doi.org/10.4230/LIPICS.SOCG.2026.41 has_accepted_license: '1' intvolume: ' 367' keyword: - Algebraic topology - Lefschetz complexes - persistent homology - vines and vineyards - birth-death pairs - shallow pairs - relations - partial orders - transpositions - Theory of computation → Computational geometry language: - iso: eng month: '05' oa: 1 oa_version: Published Version project: - _id: 2561EBF4-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: I02979-N35 name: Persistence and stability of geometric complexes - _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c call_identifier: H2020 grant_number: '101034413' name: 'IST-BRIDGE: International postdoctoral program' publication: 42nd International Symposium on Computational Geometry publication_identifier: eissn: - 1868-8969 isbn: - '9783959774185' publication_status: published publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik quality_controlled: '1' researchdata_availability: no scopus_import: '1' status: public supplementarymaterial: no title: The depth poset under transpositions in the filter tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 367 year: '2026' ... --- OA_place: publisher OA_type: hybrid _id: '22717' abstract: - lang: eng text: "We study concurrent graph games where n players cooperate against an opponent to reach a set of target states. Unlike traditional settings, we study distributed randomisation: team players do not share a source of randomness, and their private random sources are hidden from the opponent and from each other.\r\n\r\nWe show that memoryless strategies are sufficient for the threshold problem (deciding whether there is a strategy for the team that ensures winning with probability that exceeds a threshold), a result that not only places the problem in the Existential Theory of the Reals (ER) but also enables the construction of value iteration algorithms. We additionally show that the threshold problem is NP-hard. For the almost-sure reachability problem, we prove NP-completeness.\r\n\r\nWe introduce Individually Randomised Alternating-time Temporal Logic (IRATL). This logic extends the standard ATL framework to reason about probability thresholds, with semantics explicitly designed for coalitions that lack a shared source of randomness. On the practical side, we implement and evaluate a solver for the threshold and almost-sure problem based on the algorithms that we develop." acknowledgement: This work is a part of project VAMOS that has received funding from the European Research Council (ERC), grant agreement No 101020093. Part of this work was realised when the first author was an FNRS aspirant at Université libre de Bruxelles. article_processing_charge: Yes (in subscription journal) arxiv: 1 author: - first_name: Leonard J full_name: Brice, Leonard J id: ce3b3409-db6c-11f0-aa64-ad678f7fd937 last_name: Brice - first_name: Thomas A full_name: Henzinger, Thomas A id: 40876CD8-F248-11E8-B48F-1D18A9856A87 last_name: Henzinger orcid: 0000-0002-2985-7724 - first_name: Alipasha full_name: Montaseri, Alipasha id: 709a7f96-8896-11f0-9809-d75612fc0f2e last_name: Montaseri - first_name: Ali full_name: Shafiee, Ali id: 2783031a-7378-11f0-b2d0-f17f1db2ebad last_name: Shafiee - first_name: K. S. full_name: Thejaswini, K. S. last_name: Thejaswini citation: ama: 'Brice LJ, Henzinger TA, Montaseri A, Shafiee A, Thejaswini KS. Randomise alone, reach as a team. In: 38th International Conference on Computer Aided Verification. Vol 16682. Springer Nature; 2026:215-236. doi:10.1007/978-3-032-32519-8_12' apa: 'Brice, L. J., Henzinger, T. A., Montaseri, A., Shafiee, A., & Thejaswini, K. S. (2026). Randomise alone, reach as a team. In 38th International Conference on Computer Aided Verification (Vol. 16682, pp. 215–236). Lisbon, Portugal: Springer Nature. https://doi.org/10.1007/978-3-032-32519-8_12' chicago: Brice, Leonard J, Thomas A Henzinger, Alipasha Montaseri, Ali Shafiee, and K. S. Thejaswini. “Randomise Alone, Reach as a Team.” In 38th International Conference on Computer Aided Verification, 16682:215–36. Springer Nature, 2026. https://doi.org/10.1007/978-3-032-32519-8_12. ieee: L. J. Brice, T. A. Henzinger, A. Montaseri, A. Shafiee, and K. S. Thejaswini, “Randomise alone, reach as a team,” in 38th International Conference on Computer Aided Verification, Lisbon, Portugal, 2026, vol. 16682, pp. 215–236. ista: 'Brice LJ, Henzinger TA, Montaseri A, Shafiee A, Thejaswini KS. 2026. Randomise alone, reach as a team. 38th International Conference on Computer Aided Verification. CAV: Computer Aided Verification vol. 16682, 215–236.' mla: Brice, Leonard J., et al. “Randomise Alone, Reach as a Team.” 38th International Conference on Computer Aided Verification, vol. 16682, Springer Nature, 2026, pp. 215–36, doi:10.1007/978-3-032-32519-8_12. short: L.J. Brice, T.A. Henzinger, A. Montaseri, A. Shafiee, K.S. Thejaswini, in:, 38th International Conference on Computer Aided Verification, Springer Nature, 2026, pp. 215–236. conference: end_date: 2026-07-29 location: Lisbon, Portugal name: 'CAV: Computer Aided Verification' start_date: 2026-07-26 das_tickbox: '1' dataavailabilitystatement: "The artifact can be accessed at the link: https://doi. org/10.5281/zenodo.19680359.\r\nThe source code is available at:https://github.com/alipashamontaseri/Team-Concurrent-Game." date_created: 2026-08-16T22:01:44Z date_published: 2026-07-24T00:00:00Z date_updated: 2026-08-18T06:55:38Z day: '24' ddc: - '000' department: - _id: ToHe - _id: GradSch doi: 10.1007/978-3-032-32519-8_12 ec_funded: 1 external_id: arxiv: - '2603.07094' file: - access_level: open_access checksum: 10ded8a3ab9ed34c9e4794c0b277622c content_type: application/pdf creator: dernst date_created: 2026-08-18T06:53:22Z date_updated: 2026-08-18T06:53:22Z file_id: '22724' file_name: 2026_LNCS_Brice.pdf file_size: 1902192 relation: main_file success: 1 file_date_updated: 2026-08-18T06:53:22Z fulldoi: https://doi.org/10.1007/978-3-032-32519-8_12 has_accepted_license: '1' intvolume: ' 16682' language: - iso: eng month: '07' oa: 1 oa_version: Published Version page: 215-236 project: - _id: 62781420-2b32-11ec-9570-8d9b63373d4d call_identifier: H2020 grant_number: '101020093' name: Vigilant Algorithmic Monitoring of Software publication: 38th International Conference on Computer Aided Verification publication_identifier: eissn: - 1611-3349 isbn: - '9783032325181' issn: - 0302-9743 publication_status: published publisher: Springer Nature quality_controlled: '1' researchdata_availability: yes scopus_import: '1' status: public supplementarymaterial: no title: Randomise alone, reach as a team tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 16682 year: '2026' ... --- OA_place: publisher OA_type: gold _id: '22722' abstract: - lang: eng text: "The local structure of a protein strongly impacts its function and interactions\r\nwith other molecules. Representing local biomolecular environments remains a\r\nkey challenge while applying machine learning approaches over protein structures. The structural and chemical variability of these environments makes them\r\nchallenging to model, and performing representation learning on these objects\r\nremains largely under-explored. In this work, we propose representations for\r\nlocal protein environments that leverage intermediate features from machine learning force fields (MLFFs). We extensively benchmark state-of-the-art MLFFs,\r\ncomparing their performance across latent spaces and downstream tasks, and\r\nshow that their embeddings capture local structural (e.g., secondary motifs) and\r\nchemical features (e.g., amino acid identity and protonation state), organizing\r\nprotein environments into a structured manifold. We show that these representations enable zero-shot generalization and transfer across diverse downstream\r\ntasks. As a case study, we build a physics-informed, uncertainty-aware chemical shift predictor that achieves state-of-the-art accuracy in biomolecular NMR\r\nspectroscopy. Our results establish MLFFs as general-purpose, reusable representation learners for protein modeling, opening new directions in representation learning for structured physical systems. Code and data are available at\r\nhttps://github.com/mb012/MLFF_representation.\r\n" acknowledged_ssus: - _id: ScienComp acknowledgement: "This work was supported by the Institute of Science and Technology Austria (ISTA) through the IPC\r\ngrant “Generative Protein NMR” and by the Israeli Science Foundation (ISF) under grant number\r\n1834/24. This research used resources of the Institute of Science and Technology Austria’s scientific\r\ncomputing cluster. S.V. was supported in part by funding from the Eric and Wendy Schmidt Center at\r\nthe Broad Institute of MIT and Harvard." article_processing_charge: No arxiv: 1 author: - first_name: Meital I full_name: Bojan, Meital I id: 11d88cf5-91ca-11f0-a95f-edf9f08f47b7 last_name: Bojan - first_name: Sanketh full_name: Vedula, Sanketh last_name: Vedula - first_name: Sai A full_name: Maddipatla, Sai A id: e957f5e5-91c9-11f0-a95f-e090f66ecb4d last_name: Maddipatla - first_name: Nadav E full_name: Sellam, Nadav E id: ef280fe0-91c9-11f0-a95f-8dea3f5bc513 last_name: Sellam - first_name: Anar full_name: Rzayev, Anar id: 2cd60677-9acd-11f1-ae1a-a85ae1c4dd35 last_name: Rzayev - first_name: Federico full_name: Napoli, Federico id: d42e08e7-f4fc-11eb-af0a-d71e26138f1b last_name: Napoli orcid: 0000-0002-9043-136X - first_name: Paul full_name: Schanda, Paul id: 7B541462-FAF6-11E9-A490-E8DFE5697425 last_name: Schanda orcid: 0000-0002-9350-7606 - first_name: Alexander full_name: Bronstein, Alexander id: 58f3726e-7cba-11ef-ad8b-e6e8cb3904e6 last_name: Bronstein orcid: 0000-0001-9699-8730 citation: ama: 'Bojan MI, Vedula S, Maddipatla SA, et al. Representing local protein environments with machine learning force fields. In: 14th International Conference on Learning Representations. Vol 2026. ; 2026:100760-100799.' apa: Bojan, M. I., Vedula, S., Maddipatla, S. A., Sellam, N. E., Rzayev, A., Napoli, F., … Bronstein, A. M. (2026). Representing local protein environments with machine learning force fields. In 14th International Conference on Learning Representations (Vol. 2026, pp. 100760–100799). Rio de Janeiro, Brazil. chicago: Bojan, Meital I, Sanketh Vedula, Sai A Maddipatla, Nadav E Sellam, Anar Rzayev, Federico Napoli, Paul Schanda, and Alex M. Bronstein. “Representing Local Protein Environments with Machine Learning Force Fields.” In 14th International Conference on Learning Representations, 2026:100760–99, 2026. ieee: M. I. Bojan et al., “Representing local protein environments with machine learning force fields,” in 14th International Conference on Learning Representations, Rio de Janeiro, Brazil, 2026, vol. 2026, pp. 100760–100799. ista: 'Bojan MI, Vedula S, Maddipatla SA, Sellam NE, Rzayev A, Napoli F, Schanda P, Bronstein AM. 2026. Representing local protein environments with machine learning force fields. 14th International Conference on Learning Representations. ICLR: International Conference on Learning Representations vol. 2026, 100760–100799.' mla: Bojan, Meital I., et al. “Representing Local Protein Environments with Machine Learning Force Fields.” 14th International Conference on Learning Representations, vol. 2026, 2026, pp. 100760–99. short: M.I. Bojan, S. Vedula, S.A. Maddipatla, N.E. Sellam, A. Rzayev, F. Napoli, P. Schanda, A.M. Bronstein, in:, 14th International Conference on Learning Representations, 2026, pp. 100760–100799. conference: end_date: 2026-04-27 location: Rio de Janeiro, Brazil name: 'ICLR: International Conference on Learning Representations' start_date: 2026-04-23 corr_author: '1' das_tickbox: '1' dataavailabilitystatement: "The code, trained models, and data-processing scripts are publicly available at https://github.\r\ncom/mb012/MLFF_representation. In addition, complete details of the models and optimization parameters are provided in Appendix G.3. The hardware resources used to produce the\r\nresults are specified in Appendix I.4. The loss functions, evaluation metrics, and details regarding\r\nablation studies are specified in Appendix G. These details ensure that all results reported in the paper\r\ncan be independently verified." date_created: 2026-08-17T12:03:24Z date_published: 2026-05-01T00:00:00Z date_updated: 2026-08-18T06:36:55Z day: '01' ddc: - '000' - '570' department: - _id: GradSch - _id: PaSc - _id: AlBr external_id: arxiv: - '2505.23354' file: - access_level: open_access checksum: 9f43f5469443388ec55388d95c4cf243 content_type: application/pdf creator: dernst date_created: 2026-08-18T06:33:14Z date_updated: 2026-08-18T06:33:14Z file_id: '22723' file_name: 2026_ICLR_Bojan.pdf file_size: 8534339 relation: main_file success: 1 file_date_updated: 2026-08-18T06:33:14Z has_accepted_license: '1' intvolume: ' 2026' language: - iso: eng month: '05' oa: 1 oa_version: Published Version page: 100760-100799 publication: 14th International Conference on Learning Representations publication_status: published quality_controlled: '1' related_material: link: - relation: software url: https://github.com/mb012/MLFF_representation researchdata_availability: yes status: public supplementarymaterial: yes title: Representing local protein environments with machine learning force fields tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 2026 year: '2026' ... --- OA_place: publisher OA_type: hybrid PlanS_conform: '1' _id: '22720' abstract: - lang: eng text: Circadian clocks underlie daily rhythms in physiology by coordinating temporal patterns of gene expression and protein function throughout the body. At the core of this system in mammals is CLOCK/BMAL1, a ubiquitously expressed heterodimeric transcription factor complex that orchestrates tissue-specific circadian gene expression. The basis for this specificity remains unclear, but tissue-specific interactions at chromatin could provide one. Here we used chromatin immunoprecipitation coupled to mass spectrometry to map CLOCK/BMAL1-associated protein complexes on chromatin in mouse liver, kidney and lung. We detected 1,510 associated proteins, most of which were tissue-specific and not explained by protein abundance. Among these, we identified the homeodomain transcription factors PROX1, HNF1B and HOXA5 as tissue-enriched interactors that bind BMAL1, co-occupy most BMAL1 genomic sites and establish organ-restricted circadian transcription. Our findings demonstrate that tissue-specific transcription factors confer cellular identity on the core clock, thereby contributing to organ-specific patterns of rhythmic gene expression. acknowledgement: We thank all members of the Robles’ group for critical comments on and edits to this paper. We thank S. Kay for providing dihXY HCC cell lines and D. Firsov and Y. Bignon for mouse BMAL1-knockout (KO) kidney tissues. This work was supported by the German Research Foundation (DFG) project no. 213249687—SFB 1064 and RO 5675/1-1 to M.S.R., F.A. and L.A.H. M.S.R was also supported by DFG INST 86/1800-1 FUGG and LMU Munich’s Institutional Strategy LMU excellent within the framework of the German Excellence Initiative. J.S.M. was supported by US National Institutes of Health grant nos. R01GM145737 and R01DK128133. A.K.M. was supported by an ERC grant ‘ChromaChrono’ 101162145. Open access funding provided by Ludwig-Maximilians-Universität München. article_processing_charge: Yes (via OA deal) article_type: original author: - first_name: Fatih full_name: Aygenli, Fatih last_name: Aygenli - first_name: Lukas A. full_name: Huschet, Lukas A. last_name: Huschet - first_name: Tanja full_name: Popp, Tanja last_name: Popp - first_name: Andrea full_name: Ribeiro, Andrea last_name: Ribeiro - first_name: Darina full_name: Barkhatova, Darina id: db547c8c-329f-11ee-a353-cde802618f9e last_name: Barkhatova orcid: 0000-0002-0062-2817 - first_name: Céline full_name: Jouffe, Céline last_name: Jouffe - first_name: Ricardo full_name: Trozzo, Ricardo last_name: Trozzo - first_name: Jerome S. full_name: Menet, Jerome S. last_name: Menet - first_name: Roland full_name: Rad, Roland last_name: Rad - first_name: Kenneth A. full_name: Dyar, Kenneth A. last_name: Dyar - first_name: Maciej full_name: Lech, Maciej last_name: Lech - first_name: Tobias full_name: Straub, Tobias last_name: Straub - first_name: Alicia full_name: Michael, Alicia id: 6437c950-2a03-11ee-914d-d6476dd7b75c last_name: Michael orcid: 0000-0002-6080-839X - first_name: Maria S. full_name: Robles, Maria S. last_name: Robles citation: ama: Aygenli F, Huschet LA, Popp T, et al. CLOCK/BMAL1 interactome uncovers homeodomain factors as tissue regulators. Nature Cell Biology. 2026. doi:10.1038/s41556-026-02041-4 apa: Aygenli, F., Huschet, L. A., Popp, T., Ribeiro, A., Barkhatova, D., Jouffe, C., … Robles, M. S. (2026). CLOCK/BMAL1 interactome uncovers homeodomain factors as tissue regulators. Nature Cell Biology. Springer Nature. https://doi.org/10.1038/s41556-026-02041-4 chicago: Aygenli, Fatih, Lukas A. Huschet, Tanja Popp, Andrea Ribeiro, Darina Barkhatova, Céline Jouffe, Ricardo Trozzo, et al. “CLOCK/BMAL1 Interactome Uncovers Homeodomain Factors as Tissue Regulators.” Nature Cell Biology. Springer Nature, 2026. https://doi.org/10.1038/s41556-026-02041-4. ieee: F. Aygenli et al., “CLOCK/BMAL1 interactome uncovers homeodomain factors as tissue regulators,” Nature Cell Biology. Springer Nature, 2026. ista: Aygenli F, Huschet LA, Popp T, Ribeiro A, Barkhatova D, Jouffe C, Trozzo R, Menet JS, Rad R, Dyar KA, Lech M, Straub T, Michael AK, Robles MS. 2026. CLOCK/BMAL1 interactome uncovers homeodomain factors as tissue regulators. Nature Cell Biology. mla: Aygenli, Fatih, et al. “CLOCK/BMAL1 Interactome Uncovers Homeodomain Factors as Tissue Regulators.” Nature Cell Biology, Springer Nature, 2026, doi:10.1038/s41556-026-02041-4. short: F. Aygenli, L.A. Huschet, T. Popp, A. Ribeiro, D. Barkhatova, C. Jouffe, R. Trozzo, J.S. Menet, R. Rad, K.A. Dyar, M. Lech, T. Straub, A.K. Michael, M.S. Robles, Nature Cell Biology (2026). das_tickbox: '1' dataavailabilitystatement: Proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE64 partner repository with the dataset identifiers PXD062751 and PXD077567. RNA-seq data are available in the European Nucleotide Archive (ENA) under accession no. PRJEB93884, and ChIP–seq data at the Gene Expression Omnibus (GEO) under accession no. GSE302237. AlphaFold 3 interaction prediction parameters can be provided during the revision process on editorial and/or review request. Source data are provided with this paper. date_created: 2026-08-16T22:01:44Z date_published: 2026-08-06T00:00:00Z date_updated: 2026-08-18T08:03:22Z day: '06' ddc: - '570' department: - _id: GradSch - _id: AlMi doi: 10.1038/s41556-026-02041-4 external_id: pmid: - '42562924' fulldoi: https://doi.org/10.1038/s41556-026-02041-4 has_accepted_license: '1' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1038/s41556-026-02041-4 month: '08' oa: 1 oa_version: Published Version pmid: 1 project: - _id: 9136c684-16d5-11f0-9cad-91c0177b365f grant_number: '101162145' name: Circadian structural transitions of chromatin publication: Nature Cell Biology publication_identifier: eissn: - 1476-4679 issn: - 1465-7392 publication_status: epub_ahead publisher: Springer Nature quality_controlled: '1' researchdata_availability: yes scopus_import: '1' status: public supplementarymaterial: yes title: CLOCK/BMAL1 interactome uncovers homeodomain factors as tissue regulators tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2026' ...