{"date_updated":"2024-03-20T08:06:22Z","ddc":["570"],"status":"public","publication_status":"published","has_accepted_license":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","conference":{"start_date":"2020-11-02","end_date":"2020-11-30","location":"Virtual","name":"ECM: Electronic Conference on Microbiology"},"doi":"10.3390/ecm2020-07116","_id":"15071","type":"conference","acknowledgement":"The work was supported by of Russian Foundation of Basic Research: grant № 19-04-00831 for Viktoria Shcherbakova and Olga Troshina, grant № 18-34-00334 for Viktoriia Oshurkova and Vladimir Trubitsyn. \r\nWe thank Dr Natalia Suzina (IBPM RAS, Federal Research Center Pushchino Center for\r\nBiological Research RAS) for the help with the microscopic studies, respectively; Dr. Margarita Meyer (Division of Genetics, Department of Medicine, BWH and HMS, USA) and Dr Fedor Kondrashov (IST, Austria) for their help in obtaining the genomic sequence of strain JL01. ","quality_controlled":"1","title":"Characterization of methanosarcina mazei JL01 isolated from holocene arctic permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata GLS2T","article_processing_charge":"Yes","date_published":"2020-11-02T00:00:00Z","month":"11","department":[{"_id":"FyKo"}],"author":[{"first_name":"Viktoriia","full_name":"Oshurkova, Viktoriia","last_name":"Oshurkova"},{"last_name":"Troshina","full_name":"Troshina, Olga","first_name":"Olga"},{"first_name":"Vladimir","full_name":"Trubitsyn, Vladimir","last_name":"Trubitsyn"},{"last_name":"Ryzhmanova","full_name":"Ryzhmanova, Yana","first_name":"Yana"},{"last_name":"Bochkareva","full_name":"Bochkareva, Olga","first_name":"Olga","orcid":"0000-0003-1006-6639","id":"C4558D3C-6102-11E9-A62E-F418E6697425"},{"last_name":"Shcherbakova","full_name":"Shcherbakova, Viktoria","first_name":"Viktoria"}],"language":[{"iso":"eng"}],"year":"2020","day":"02","license":"https://creativecommons.org/licenses/by/4.0/","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","short":"CC BY (4.0)"},"publisher":"MDPI","file":[{"relation":"main_file","date_updated":"2024-03-20T08:05:46Z","file_name":"2020_ECM_Oshurkova.pdf","content_type":"application/pdf","checksum":"d1914af7811a21a4b2744eb51b5834e3","creator":"dernst","file_size":595543,"success":1,"file_id":"15127","date_created":"2024-03-20T08:05:46Z","access_level":"open_access"}],"oa":1,"file_date_updated":"2024-03-20T08:05:46Z","date_created":"2024-03-04T11:41:31Z","abstract":[{"text":"A mesophilic methanogenic culture, designated JL01, was isolated from Holocene permafrost in the Russian Arctic [1]. After long-term extensive cultivation at 15°C it turned out to be a tied binary culture of archaeal (JL01) and bacterial (Sphaerochaeta associata GLS2) strains.\r\nStrain JL01 was a strict anaerobe and grew on methanol, acetate and methylamines as energy and carbon sources. Cells were irregular coccoid, non-motile, non-spore-forming, and Gram-stainpositive. Optimum conditions for growth were 24-28 oC, pH 6.8–7.3 and 0.075-0.1 M NaCl.\r\nPhylogenetic tree reconstructions based on 16S rRNA and concatenated alignment of broadly\r\nconserved protein-coding genes revealed its close relation to Methanosarcina mazei S-6\r\nT (similarity 99.5%). The comparison of whole genomic sequences (ANI) of the isolate and the type strain of M.mazei was 98.5%, which is higher than the values recommended for new species. Thus strain JL01 (=VKM B-2370=JCM 31898) represents the first M. mazei isolated from permanently subzero Arcticsediments. The long-term co-cultivation of JL01 with S. associata GLS2T showed the methane production without any additional carbon and energy sources. Genome analysis of S. associata GLS2T revealed putative genes involved in methanochondroithin catabolism.","lang":"eng"}],"oa_version":"Published Version","publication":"Proceedings of 1st International Electronic Conference on Microbiology","citation":{"apa":"Oshurkova, V., Troshina, O., Trubitsyn, V., Ryzhmanova, Y., Bochkareva, O., &#38; Shcherbakova, V. (2020). Characterization of methanosarcina mazei JL01 isolated from holocene arctic permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata GLS2T. In <i>Proceedings of 1st International Electronic Conference on Microbiology</i>. Virtual: MDPI. <a href=\"https://doi.org/10.3390/ecm2020-07116\">https://doi.org/10.3390/ecm2020-07116</a>","short":"V. Oshurkova, O. Troshina, V. Trubitsyn, Y. Ryzhmanova, O. Bochkareva, V. Shcherbakova, in:, Proceedings of 1st International Electronic Conference on Microbiology, MDPI, 2020.","chicago":"Oshurkova, Viktoriia, Olga Troshina, Vladimir Trubitsyn, Yana Ryzhmanova, Olga Bochkareva, and Viktoria Shcherbakova. “Characterization of Methanosarcina Mazei JL01 Isolated from Holocene Arctic Permafrost and Study of the Archaeon Cooperation with Bacterium Sphaerochaeta Associata GLS2T.” In <i>Proceedings of 1st International Electronic Conference on Microbiology</i>. MDPI, 2020. <a href=\"https://doi.org/10.3390/ecm2020-07116\">https://doi.org/10.3390/ecm2020-07116</a>.","ama":"Oshurkova V, Troshina O, Trubitsyn V, Ryzhmanova Y, Bochkareva O, Shcherbakova V. Characterization of methanosarcina mazei JL01 isolated from holocene arctic permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata GLS2T. In: <i>Proceedings of 1st International Electronic Conference on Microbiology</i>. MDPI; 2020. doi:<a href=\"https://doi.org/10.3390/ecm2020-07116\">10.3390/ecm2020-07116</a>","ista":"Oshurkova V, Troshina O, Trubitsyn V, Ryzhmanova Y, Bochkareva O, Shcherbakova V. 2020. Characterization of methanosarcina mazei JL01 isolated from holocene arctic permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata GLS2T. Proceedings of 1st International Electronic Conference on Microbiology. ECM: Electronic Conference on Microbiology.","mla":"Oshurkova, Viktoriia, et al. “Characterization of Methanosarcina Mazei JL01 Isolated from Holocene Arctic Permafrost and Study of the Archaeon Cooperation with Bacterium Sphaerochaeta Associata GLS2T.” <i>Proceedings of 1st International Electronic Conference on Microbiology</i>, MDPI, 2020, doi:<a href=\"https://doi.org/10.3390/ecm2020-07116\">10.3390/ecm2020-07116</a>.","ieee":"V. Oshurkova, O. Troshina, V. Trubitsyn, Y. Ryzhmanova, O. Bochkareva, and V. Shcherbakova, “Characterization of methanosarcina mazei JL01 isolated from holocene arctic permafrost and study of the archaeon cooperation with bacterium Sphaerochaeta associata GLS2T,” in <i>Proceedings of 1st International Electronic Conference on Microbiology</i>, Virtual, 2020."}}