{"date_created":"2018-12-11T11:54:02Z","issue":"6","oa":1,"month":"06","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"DynamicRoots: A software platform for the reconstruction and analysis of growing plant roots","doi":"10.1371/journal.pone.0127657","publication_status":"published","department":[{"_id":"MaJö"},{"_id":"HeEd"}],"quality_controlled":"1","intvolume":"        10","file_date_updated":"2020-07-14T12:45:16Z","author":[{"full_name":"Symonova, Olga","last_name":"Symonova","first_name":"Olga","id":"3C0C7BC6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2012-9947"},{"first_name":"Christopher","last_name":"Topp","full_name":"Topp, Christopher"},{"orcid":"0000-0002-9823-6833","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","last_name":"Edelsbrunner","full_name":"Edelsbrunner, Herbert","first_name":"Herbert"}],"article_number":"e0127657","_id":"1793","has_accepted_license":"1","scopus_import":1,"date_updated":"2024-10-09T20:56:08Z","related_material":{"record":[{"relation":"research_data","status":"public","id":"9737"}]},"publication":"PLoS One","publisher":"Public Library of Science","corr_author":"1","status":"public","day":"01","year":"2015","ddc":["000"],"pubrep_id":"454","volume":10,"date_published":"2015-06-01T00:00:00Z","file":[{"file_id":"5150","date_created":"2018-12-12T10:15:30Z","relation":"main_file","file_size":1850825,"content_type":"application/pdf","checksum":"d20f26461ca575276ad3ed9ce4bfc787","file_name":"IST-2016-454-v1+1_journal.pone.0127657.pdf","access_level":"open_access","creator":"system","date_updated":"2020-07-14T12:45:16Z"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","image":"/images/cc_by.png","short":"CC BY (4.0)"},"oa_version":"Published Version","citation":{"chicago":"Symonova, Olga, Christopher Topp, and Herbert Edelsbrunner. “DynamicRoots: A Software Platform for the Reconstruction and Analysis of Growing Plant Roots.” <i>PLoS One</i>. Public Library of Science, 2015. <a href=\"https://doi.org/10.1371/journal.pone.0127657\">https://doi.org/10.1371/journal.pone.0127657</a>.","apa":"Symonova, O., Topp, C., &#38; Edelsbrunner, H. (2015). DynamicRoots: A software platform for the reconstruction and analysis of growing plant roots. <i>PLoS One</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pone.0127657\">https://doi.org/10.1371/journal.pone.0127657</a>","short":"O. Symonova, C. Topp, H. Edelsbrunner, PLoS One 10 (2015).","mla":"Symonova, Olga, et al. “DynamicRoots: A Software Platform for the Reconstruction and Analysis of Growing Plant Roots.” <i>PLoS One</i>, vol. 10, no. 6, e0127657, Public Library of Science, 2015, doi:<a href=\"https://doi.org/10.1371/journal.pone.0127657\">10.1371/journal.pone.0127657</a>.","ama":"Symonova O, Topp C, Edelsbrunner H. DynamicRoots: A software platform for the reconstruction and analysis of growing plant roots. <i>PLoS One</i>. 2015;10(6). doi:<a href=\"https://doi.org/10.1371/journal.pone.0127657\">10.1371/journal.pone.0127657</a>","ieee":"O. Symonova, C. Topp, and H. Edelsbrunner, “DynamicRoots: A software platform for the reconstruction and analysis of growing plant roots,” <i>PLoS One</i>, vol. 10, no. 6. Public Library of Science, 2015.","ista":"Symonova O, Topp C, Edelsbrunner H. 2015. DynamicRoots: A software platform for the reconstruction and analysis of growing plant roots. PLoS One. 10(6), e0127657."},"publist_id":"5318","abstract":[{"text":"We present a software platform for reconstructing and analyzing the growth of a plant root system from a time-series of 3D voxelized shapes. It aligns the shapes with each other, constructs a geometric graph representation together with the function that records the time of growth, and organizes the branches into a hierarchy that reflects the order of creation. The software includes the automatic computation of structural and dynamic traits for each root in the system enabling the quantification of growth on fine-scale. These are important advances in plant phenotyping with applications to the study of genetic and environmental influences on growth.","lang":"eng"}],"language":[{"iso":"eng"}],"type":"journal_article"}