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<titleInfo><title>Designing self-assembling kinetics with differentiable statistical physics models</title></titleInfo>


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<name type="personal">
  <namePart type="given">Carl Peter</namePart>
  <namePart type="family">Goodrich</namePart>
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  <namePart type="given">Ella M.</namePart>
  <namePart type="family">King</namePart>
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<name type="personal">
  <namePart type="given">Samuel S.</namePart>
  <namePart type="family">Schoenholz</namePart>
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  <namePart type="given">Ekin D.</namePart>
  <namePart type="family">Cubuk</namePart>
  <role><roleTerm type="text">author</roleTerm> </role></name>
<name type="personal">
  <namePart type="given">Michael P.</namePart>
  <namePart type="family">Brenner</namePart>
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<abstract lang="eng">The inverse problem of designing component interactions to target emergent structure is fundamental to numerous applications in biotechnology, materials science, and statistical physics. Equally important is the inverse problem of designing emergent kinetics, but this has received considerably less attention. Using recent advances in automatic differentiation, we show how kinetic pathways can be precisely designed by directly differentiating through statistical physics models, namely free energy calculations and molecular dynamics simulations. We consider two systems that are crucial to our understanding of structural self-assembly: bulk crystallization and small nanoclusters. In each case, we are able to assemble precise dynamical features. Using gradient information, we manipulate interactions among constituent particles to tune the rate at which these systems yield specific structures of interest. Moreover, we use this approach to learn nontrivial features about the high-dimensional design space, allowing us to accurately predict when multiple kinetic features can be simultaneously and independently controlled. These results provide a concrete and generalizable foundation for studying nonstructural self-assembly, including kinetic properties as well as other complex emergent properties, in a vast array of systems.</abstract>

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<originInfo><publisher>National Academy of Sciences</publisher><dateIssued encoding="w3cdtf">2021</dateIssued>
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<relatedItem type="host"><titleInfo><title>Proceedings of the National Academy of Sciences of the United States of America</title></titleInfo>
  <identifier type="issn">0027-8424</identifier>
  <identifier type="eIssn">1091-6490</identifier>
  <identifier type="MEDLINE">33653960</identifier>
  <identifier type="ISI">000627429100097</identifier><identifier type="doi">10.1073/pnas.2024083118</identifier>
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<ama>Goodrich CP, King EM, Schoenholz SS, Cubuk ED, Brenner MP. Designing self-assembling kinetics with differentiable statistical physics models. &lt;i&gt;Proceedings of the National Academy of Sciences of the United States of America&lt;/i&gt;. 2021;118(10). doi:&lt;a href=&quot;https://doi.org/10.1073/pnas.2024083118&quot;&gt;10.1073/pnas.2024083118&lt;/a&gt;</ama>
<chicago>Goodrich, Carl Peter, Ella M. King, Samuel S. Schoenholz, Ekin D. Cubuk, and Michael P. Brenner. “Designing Self-Assembling Kinetics with Differentiable Statistical Physics Models.” &lt;i&gt;Proceedings of the National Academy of Sciences of the United States of America&lt;/i&gt;. National Academy of Sciences, 2021. &lt;a href=&quot;https://doi.org/10.1073/pnas.2024083118&quot;&gt;https://doi.org/10.1073/pnas.2024083118&lt;/a&gt;.</chicago>
<ieee>C. P. Goodrich, E. M. King, S. S. Schoenholz, E. D. Cubuk, and M. P. Brenner, “Designing self-assembling kinetics with differentiable statistical physics models,” &lt;i&gt;Proceedings of the National Academy of Sciences of the United States of America&lt;/i&gt;, vol. 118, no. 10. National Academy of Sciences, 2021.</ieee>
<apa>Goodrich, C. P., King, E. M., Schoenholz, S. S., Cubuk, E. D., &amp;#38; Brenner, M. P. (2021). Designing self-assembling kinetics with differentiable statistical physics models. &lt;i&gt;Proceedings of the National Academy of Sciences of the United States of America&lt;/i&gt;. National Academy of Sciences. &lt;a href=&quot;https://doi.org/10.1073/pnas.2024083118&quot;&gt;https://doi.org/10.1073/pnas.2024083118&lt;/a&gt;</apa>
<ista>Goodrich CP, King EM, Schoenholz SS, Cubuk ED, Brenner MP. 2021. Designing self-assembling kinetics with differentiable statistical physics models. Proceedings of the National Academy of Sciences of the United States of America. 118(10), e2024083118.</ista>
<mla>Goodrich, Carl Peter, et al. “Designing Self-Assembling Kinetics with Differentiable Statistical Physics Models.” &lt;i&gt;Proceedings of the National Academy of Sciences of the United States of America&lt;/i&gt;, vol. 118, no. 10, e2024083118, National Academy of Sciences, 2021, doi:&lt;a href=&quot;https://doi.org/10.1073/pnas.2024083118&quot;&gt;10.1073/pnas.2024083118&lt;/a&gt;.</mla>
<short>C.P. Goodrich, E.M. King, S.S. Schoenholz, E.D. Cubuk, M.P. Brenner, Proceedings of the National Academy of Sciences of the United States of America 118 (2021).</short>
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