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4339 Publications
2022 | Journal Article | IST-REx-ID: 11432 |

Coupling 3D liquid simulation with 2D wave propagation for large scale water surface animation using the equivalent sources method
C. Schreck, C. Wojtan, Computer Graphics Forum 41 (2022) 343–353.
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C. Schreck, C. Wojtan, Computer Graphics Forum 41 (2022) 343–353.
2022 | Book (Editor) | IST-REx-ID: 11429
Web and Wireless Geographical Information Systems
F. Karimipour, S. Storandt, eds., Web and Wireless Geographical Information Systems, 1st ed., Springer Nature, Cham, 2022.
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F. Karimipour, S. Storandt, eds., Web and Wireless Geographical Information Systems, 1st ed., Springer Nature, Cham, 2022.
2022 | Book Chapter | IST-REx-ID: 11440 |

The persistent homology of dual digital image constructions
B. Bleile, A. Garin, T. Heiss, K. Maggs, V. Robins, in:, E. Gasparovic, V. Robins, K. Turner (Eds.), Research in Computational Topology 2, 1st ed., Springer Nature, Cham, 2022, pp. 1–26.
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B. Bleile, A. Garin, T. Heiss, K. Maggs, V. Robins, in:, E. Gasparovic, V. Robins, K. Turner (Eds.), Research in Computational Topology 2, 1st ed., Springer Nature, Cham, 2022, pp. 1–26.
2022 | Journal Article | IST-REx-ID: 11438 |

Laser frequency-offset locking at 10-Hz-level instability using hybrid electronic filters
V. Li, F.R. Diorico, O. Hosten, Physical Review Applied 17 (2022).
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V. Li, F.R. Diorico, O. Hosten, Physical Review Applied 17 (2022).
2022 | Journal Article | IST-REx-ID: 11435 |

A quantitative Helly-type theorem: Containment in a homothet
G. Ivanov, M. Naszodi, SIAM Journal on Discrete Mathematics 36 (2022) 951–957.
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G. Ivanov, M. Naszodi, SIAM Journal on Discrete Mathematics 36 (2022) 951–957.
2022 | Journal Article | IST-REx-ID: 11448 |

Heterogeneity of the GFP fitness landscape and data-driven protein design
L. Gonzalez Somermeyer, A. Fleiss, A.S. Mishin, N.G. Bozhanova, A.A. Igolkina, J. Meiler, M.-E. Alaball Pujol, E.V. Putintseva, K.S. Sarkisyan, F. Kondrashov, ELife 11 (2022).
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L. Gonzalez Somermeyer, A. Fleiss, A.S. Mishin, N.G. Bozhanova, A.A. Igolkina, J. Meiler, M.-E. Alaball Pujol, E.V. Putintseva, K.S. Sarkisyan, F. Kondrashov, ELife 11 (2022).
2022 | Journal Article | IST-REx-ID: 11447 |

Relation between the number of peaks and the number of reciprocal sign epistatic interactions
R.J. Saona Urmeneta, F. Kondrashov, K. Khudiakova, Bulletin of Mathematical Biology 84 (2022).
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R.J. Saona Urmeneta, F. Kondrashov, K. Khudiakova, Bulletin of Mathematical Biology 84 (2022).
2022 | Journal Article | IST-REx-ID: 11449 |

Simultaneous brain cell type and lineage determined by scRNA-seq reveals stereotyped cortical development
D.J. Anderson, F. Pauler, A. Mckenna, J. Shendure, S. Hippenmeyer, M.S. Horwitz, Cell Systems 13 (2022) 438–453.e5.
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D.J. Anderson, F. Pauler, A. Mckenna, J. Shendure, S. Hippenmeyer, M.S. Horwitz, Cell Systems 13 (2022) 438–453.e5.
2022 | Journal Article | IST-REx-ID: 11443 |

Extension complexity of low-dimensional polytopes
M.A. Kwan, L. Sauermann, Y. Zhao, Transactions of the American Mathematical Society 375 (2022) 4209–4250.
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M.A. Kwan, L. Sauermann, Y. Zhao, Transactions of the American Mathematical Society 375 (2022) 4209–4250.
2022 | Journal Article | IST-REx-ID: 11444 |

From the prefect’s desk: Gerard van Swieten’s library correspondence
C.A. Chlebak, P.H. Reid, Library and Information History 38 (2022) 23–41.
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C.A. Chlebak, P.H. Reid, Library and Information History 38 (2022) 23–41.
2022 | Conference Paper | IST-REx-ID: 11459 |

Differential cost analysis with simultaneous potentials and anti-potentials
D. Zikelic, B.-Y.E. Chang, P. Bolignano, F. Raimondi, in:, Proceedings of the 43rd ACM SIGPLAN International Conference on Programming Language Design and Implementation, Association for Computing Machinery, 2022, pp. 442–457.
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D. Zikelic, B.-Y.E. Chang, P. Bolignano, F. Raimondi, in:, Proceedings of the 43rd ACM SIGPLAN International Conference on Programming Language Design and Implementation, Association for Computing Machinery, 2022, pp. 442–457.
2022 | Book Chapter | IST-REx-ID: 11456
Proteomic Analysis of C. Elegans Neurons Using TurboID-Based Proximity Labeling
M. Artan, M. de Bono, in:, D. Yamamoto (Ed.), Behavioral Neurogenetics, Springer Nature, New York, 2022, pp. 277–294.
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M. Artan, M. de Bono, in:, D. Yamamoto (Ed.), Behavioral Neurogenetics, Springer Nature, New York, 2022, pp. 277–294.
2022 | Journal Article | IST-REx-ID: 11460 |

WDFY3 mutation alters laminar position and morphology of cortical neurons
Z.A. Schaaf, L. Tat, N. Cannizzaro, R. Green, T. Rülicke, S. Hippenmeyer, K.S. Zarbalis, Molecular Autism 13 (2022).
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Z.A. Schaaf, L. Tat, N. Cannizzaro, R. Green, T. Rülicke, S. Hippenmeyer, K.S. Zarbalis, Molecular Autism 13 (2022).
2022 | Journal Article | IST-REx-ID: 11471 |

Avoiding barren plateaus using classical shadows
S. Sack, R.A. Medina Ramos, A. Michailidis, R. Kueng, M. Serbyn, PRX Quantum 3 (2022).
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| arXiv
S. Sack, R.A. Medina Ramos, A. Michailidis, R. Kueng, M. Serbyn, PRX Quantum 3 (2022).
2022 | Journal Article | IST-REx-ID: 11462
Combining of synthetic VHH and immune scFv libraries for pregnancy-associated glycoproteins ELISA development
D. Dormeshkin, M. Shapira, A. Karputs, A. Kavaleuski, I. Kuzminski, E. Stepanova, A. Gilep, Applied Microbiology and Biotechnology 106 (2022) 5093–5103.
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D. Dormeshkin, M. Shapira, A. Karputs, A. Kavaleuski, I. Kuzminski, E. Stepanova, A. Gilep, Applied Microbiology and Biotechnology 106 (2022) 5093–5103.
2022 | Conference Paper | IST-REx-ID: 11476 |

CoCoA: Concurrent continuous group key agreement
J. Alwen, B. Auerbach, M. Cueto Noval, K. Klein, G. Pascual Perez, K.Z. Pietrzak, M. Walter, in:, Advances in Cryptology – EUROCRYPT 2022, Springer Nature, Cham, 2022, pp. 815–844.
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J. Alwen, B. Auerbach, M. Cueto Noval, K. Klein, G. Pascual Perez, K.Z. Pietrzak, M. Walter, in:, Advances in Cryptology – EUROCRYPT 2022, Springer Nature, Cham, 2022, pp. 815–844.
2022 | Journal Article | IST-REx-ID: 10564 |

Polaron models with regular interactions at strong coupling
K. Mysliwy, R. Seiringer, Journal of Statistical Physics 186 (2022).
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| arXiv
K. Mysliwy, R. Seiringer, Journal of Statistical Physics 186 (2022).
2022 | Journal Article | IST-REx-ID: 11489 |

The hydrophilic loop of Arabidopsis PIN1 auxin efflux carrier harbors hallmarks of an intrinsically disordered protein
V. Bilanovičová, N. Rýdza, L. Koczka, M. Hess, E. Feraru, J. Friml, T. Nodzyński, International Journal of Molecular Sciences 23 (2022) 6352.
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V. Bilanovičová, N. Rýdza, L. Koczka, M. Hess, E. Feraru, J. Friml, T. Nodzyński, International Journal of Molecular Sciences 23 (2022) 6352.
2022 | Journal Article | IST-REx-ID: 11546 |

Inversions and parallel evolution
A.M. Westram, R. Faria, K. Johannesson, R. Butlin, N.H. Barton, Philosophical Transactions of the Royal Society B: Biological Sciences 377 (2022).
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A.M. Westram, R. Faria, K. Johannesson, R. Butlin, N.H. Barton, Philosophical Transactions of the Royal Society B: Biological Sciences 377 (2022).
2022 | Journal Article | IST-REx-ID: 11545 |

Contravariant pairings between standard Whittaker modules and Verma modules
A. Brown, A. Romanov, Journal of Algebra 609 (2022) 145–179.
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A. Brown, A. Romanov, Journal of Algebra 609 (2022) 145–179.
2022 | Journal Article | IST-REx-ID: 11553 |

The dynamics of complex box mappings
T. Clark, K. Drach, O. Kozlovski, S.V. Strien, Arnold Mathematical Journal 8 (2022) 319–410.
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T. Clark, K. Drach, O. Kozlovski, S.V. Strien, Arnold Mathematical Journal 8 (2022) 319–410.
2022 | Journal Article | IST-REx-ID: 11551 |

Most mitochondrial dGTP is tightly bound to respiratory complex I through the NDUFA10 subunit
D. Molina-Granada, E. González-Vioque, M.G. Dibley, R. Cabrera-Pérez, A. Vallbona-Garcia, J. Torres-Torronteras, L.A. Sazanov, M.T. Ryan, Y. Cámara, R. Martí, Communications Biology 5 (2022).
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D. Molina-Granada, E. González-Vioque, M.G. Dibley, R. Cabrera-Pérez, A. Vallbona-Garcia, J. Torres-Torronteras, L.A. Sazanov, M.T. Ryan, Y. Cámara, R. Martí, Communications Biology 5 (2022).
2022 | Journal Article | IST-REx-ID: 11552 |

Femtosecond rotational dynamics of D2 molecules in superfluid helium nanodroplets
J. Qiang, L. Zhou, P. Lu, K. Lin, Y. Ma, S. Pan, C. Lu, W. Jiang, F. Sun, W. Zhang, H. Li, X. Gong, I.S. Averbukh, Y. Prior, C.A. Schouder, H. Stapelfeldt, I. Cherepanov, M. Lemeshko, W. Jäger, J. Wu, Physical Review Letters 128 (2022).
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J. Qiang, L. Zhou, P. Lu, K. Lin, Y. Ma, S. Pan, C. Lu, W. Jiang, F. Sun, W. Zhang, H. Li, X. Gong, I.S. Averbukh, Y. Prior, C.A. Schouder, H. Stapelfeldt, I. Cherepanov, M. Lemeshko, W. Jäger, J. Wu, Physical Review Letters 128 (2022).
2022 | Journal Article | IST-REx-ID: 11556 |

Direct simulation Monte Carlo for new regimes in aggregation-fragmentation kinetics
A. Kalinov, A.I. Osinskiy, S.A. Matveev, W. Otieno, N.V. Brilliantov, Journal of Computational Physics 467 (2022).
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A. Kalinov, A.I. Osinskiy, S.A. Matveev, W. Otieno, N.V. Brilliantov, Journal of Computational Physics 467 (2022).
2022 | Journal Article | IST-REx-ID: 11587 |

A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis
Zhang R, Kuo R, Coulter M, Calixto CPG, Entizne JC, Guo W, Marquez Y, Milne L, Riegler S, Matsui A, Tanaka M, Harvey S, Gao Y, Wießner-Kroh T, Paniagua A, Crespi M, Denby K, Hur AB, Huq E, Jantsch M, Jarmolowski A, Koester T, Laubinger S, Li QQ, Gu L, Seki M, Staiger D, Sunkar R, Szweykowska-Kulinska Z, Tu SL, Wachter A, Waugh R, Xiong L, Zhang XN, Conesa A, Reddy ASN, Barta A, Kalyna M, Brown JWS. 2022. A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis. Genome Biology. 23, 149.
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Zhang R, Kuo R, Coulter M, Calixto CPG, Entizne JC, Guo W, Marquez Y, Milne L, Riegler S, Matsui A, Tanaka M, Harvey S, Gao Y, Wießner-Kroh T, Paniagua A, Crespi M, Denby K, Hur AB, Huq E, Jantsch M, Jarmolowski A, Koester T, Laubinger S, Li QQ, Gu L, Seki M, Staiger D, Sunkar R, Szweykowska-Kulinska Z, Tu SL, Wachter A, Waugh R, Xiong L, Zhang XN, Conesa A, Reddy ASN, Barta A, Kalyna M, Brown JWS. 2022. A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis. Genome Biology. 23, 149.
2022 | Journal Article | IST-REx-ID: 11588 |

Single platelet and megakaryocyte morpho-dynamics uncovered by multicolor reporter mouse strains in vitro and in vivo
L. Nicolai, R. Kaiser, R. Escaig, M.L. Hoffknecht, A. Anjum, A. Leunig, J. Pircher, A. Ehrlich, M. Lorenz, H. Ishikawa-Ankerhold, W.C. Aird, S. Massberg, F.R. Gärtner, Haematologica 107 (2022) 1669–1680.
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L. Nicolai, R. Kaiser, R. Escaig, M.L. Hoffknecht, A. Anjum, A. Leunig, J. Pircher, A. Ehrlich, M. Lorenz, H. Ishikawa-Ankerhold, W.C. Aird, S. Massberg, F.R. Gärtner, Haematologica 107 (2022) 1669–1680.
2022 | Journal Article | IST-REx-ID: 11589 |

Constitutive active CPK30 interferes with root growth and endomembrane trafficking in Arabidopsis thaliana
R. Wang, E. Himschoot, J. Chen, M. Boudsocq, D. Geelen, J. Friml, T. Beeckman, S. Vanneste, Frontiers in Plant Science 13 (2022).
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R. Wang, E. Himschoot, J. Chen, M. Boudsocq, D. Geelen, J. Friml, T. Beeckman, S. Vanneste, Frontiers in Plant Science 13 (2022).
2022 | Journal Article | IST-REx-ID: 11590 |

Artificial atoms from cold bosons in one dimension
F. Brauneis, T.G. Backert, S.I. Mistakidis, M. Lemeshko, H.W. Hammer, A. Volosniev, New Journal of Physics 24 (2022).
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F. Brauneis, T.G. Backert, S.I. Mistakidis, M. Lemeshko, H.W. Hammer, A. Volosniev, New Journal of Physics 24 (2022).
2022 | Journal Article | IST-REx-ID: 11591 |

Long-distance distribution of qubit-qubit entanglement using Gaussian-correlated photonic beams
J. Agustí, Y. Minoguchi, J.M. Fink, P. Rabl, Physical Review A 105 (2022).
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J. Agustí, Y. Minoguchi, J.M. Fink, P. Rabl, Physical Review A 105 (2022).
2022 | Journal Article | IST-REx-ID: 11592 |

Unitary Fermi superfluid near the critical temperature: Thermodynamics and sound modes from elementary excitations
G. Bighin, A. Cappellaro, L. Salasnich, Physical Review A 105 (2022).
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G. Bighin, A. Cappellaro, L. Salasnich, Physical Review A 105 (2022).
2022 | Journal Article | IST-REx-ID: 10411
Bending to auxin: Fast acid growth for tropisms
L. Li, M.C. Gallei, J. Friml, Trends in Plant Science 27 (2022) 440–449.
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L. Li, M.C. Gallei, J. Friml, Trends in Plant Science 27 (2022) 440–449.
2022 | Journal Article | IST-REx-ID: 11637 |

ROS and cGMP signaling modulate persistent escape from hypoxia in Caenorhabditis elegans
L. Zhao, L.A. Fenk, L. Nilsson, N.P. Amin-Wetzel, N. Ramirez, M. de Bono, C. Chen, PLoS Biology 20 (2022).
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L. Zhao, L.A. Fenk, L. Nilsson, N.P. Amin-Wetzel, N. Ramirez, M. de Bono, C. Chen, PLoS Biology 20 (2022).
2022 | Journal Article | IST-REx-ID: 11638 |

Inferring couplings in networks across order-disorder phase transitions
V. Ngampruetikorn, V. Sachdeva, J. Torrence, J. Humplik, D.J. Schwab, S.E. Palmer, Physical Review Research 4 (2022).
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| arXiv
V. Ngampruetikorn, V. Sachdeva, J. Torrence, J. Humplik, D.J. Schwab, S.E. Palmer, Physical Review Research 4 (2022).
2022 | Journal Article | IST-REx-ID: 11636 |

The Bertini irreducibility theorem for higher codimensional slices
P. Kmentt, A.L. Shute, Finite Fields and Their Applications 83 (2022).
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| arXiv
P. Kmentt, A.L. Shute, Finite Fields and Their Applications 83 (2022).
2022 | Journal Article | IST-REx-ID: 11639 |

List decoding random Euclidean codes and Infinite constellations
Y. Zhang, S. Vatedka, IEEE Transactions on Information Theory 68 (2022) 7753–7786.
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| arXiv
Y. Zhang, S. Vatedka, IEEE Transactions on Information Theory 68 (2022) 7753–7786.
2022 | Journal Article | IST-REx-ID: 11640 |

Using gridCoal to assess whether standard population genetic theory holds in the presence of spatio-temporal heterogeneity in population size
E. Szep, B. Trubenova, K. Csilléry, Molecular Ecology Resources 22 (2022) 2941–2955.
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E. Szep, B. Trubenova, K. Csilléry, Molecular Ecology Resources 22 (2022) 2941–2955.
2022 | Journal Article | IST-REx-ID: 11648 |

Structures of multisubunit membrane complexes with the CRYO ARM 200
C. Gerle, J. Kishikawa, T. Yamaguchi, A. Nakanishi, M.O. Çoruh, F. Makino, T. Miyata, A. Kawamoto, K. Yokoyama, K. Namba, G. Kurisu, T. Kato, Microscopy 71 (2022) 249–261.
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C. Gerle, J. Kishikawa, T. Yamaguchi, A. Nakanishi, M.O. Çoruh, F. Makino, T. Miyata, A. Kawamoto, K. Yokoyama, K. Namba, G. Kurisu, T. Kato, Microscopy 71 (2022) 249–261.
2022 | Journal Article | IST-REx-ID: 11658 |

Depth in arrangements: Dehn–Sommerville–Euler relations with applications
R. Biswas, S. Cultrera di Montesano, H. Edelsbrunner, M. Saghafian, Leibniz International Proceedings on Mathematics (n.d.).
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R. Biswas, S. Cultrera di Montesano, H. Edelsbrunner, M. Saghafian, Leibniz International Proceedings on Mathematics (n.d.).
2022 | Journal Article | IST-REx-ID: 11660 |

A window to the persistence of 1D maps. I: Geometric characterization of critical point pairs
R. Biswas, S. Cultrera di Montesano, H. Edelsbrunner, M. Saghafian, LIPIcs (n.d.).
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R. Biswas, S. Cultrera di Montesano, H. Edelsbrunner, M. Saghafian, LIPIcs (n.d.).
2022 | Journal Article | IST-REx-ID: 10604 |

Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics, and disease control
M. Turelli, N.H. Barton, Evolution Letters 6 (2022) 92–105.
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M. Turelli, N.H. Barton, Evolution Letters 6 (2022) 92–105.
2022 | Research Data Reference | IST-REx-ID: 11686 |

Wolbachia frequency data from: Why did the Wolbachia transinfection cross the road? Drift, deterministic dynamics and disease control
M. Turelli, N.H. Barton, (2022).
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M. Turelli, N.H. Barton, (2022).
2022 | Journal Article | IST-REx-ID: 11451 |

The chemistry of Cu₃N and Cu₃PdN nanocrystals
M. Parvizian, A. Duràn Balsa, R. Pokratath, C. Kalha, S. Lee, D. Van Den Eynden, M. Ibáñez, A. Regoutz, J. De Roo, Angewandte Chemie - International Edition 61 (2022).
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M. Parvizian, A. Duràn Balsa, R. Pokratath, C. Kalha, S. Lee, D. Van Den Eynden, M. Ibáñez, A. Regoutz, J. De Roo, Angewandte Chemie - International Edition 61 (2022).
2022 | Journal Article | IST-REx-ID: 11700 |

Gradient flow formulation of diffusion equations in the Wasserstein space over a metric graph
M. Erbar, D.L. Forkert, J. Maas, D. Mugnolo, Networks and Heterogeneous Media 17 (2022) 687–717.
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| arXiv
M. Erbar, D.L. Forkert, J. Maas, D. Mugnolo, Networks and Heterogeneous Media 17 (2022) 687–717.
2022 | Research Data Reference | IST-REx-ID: 11695 |

Data for "The chemistry of Cu3N and Cu3PdN nanocrystals"
M. Parvizian, A. Duran Balsa, R. Pokratath, C. Kalha, S. Lee, D. Van den Eynden, M. Ibáñez, A. Regoutz, J. De Roo, (2022).
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M. Parvizian, A. Duran Balsa, R. Pokratath, C. Kalha, S. Lee, D. Van den Eynden, M. Ibáñez, A. Regoutz, J. De Roo, (2022).
2022 | Journal Article | IST-REx-ID: 11705 |

Surface functionalization of surfactant-free particles: A strategy to tailor the properties of nanocomposites for enhanced thermoelectric performance
C. Chang, Y. Liu, S. Lee, M. Spadaro, K.M. Koskela, T. Kleinhanns, T. Costanzo, J. Arbiol, R.L. Brutchey, M. Ibáñez, Angewandte Chemie - International Edition 61 (2022).
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C. Chang, Y. Liu, S. Lee, M. Spadaro, K.M. Koskela, T. Kleinhanns, T. Costanzo, J. Arbiol, R.L. Brutchey, M. Ibáñez, Angewandte Chemie - International Edition 61 (2022).
2022 | Journal Article | IST-REx-ID: 11703 |

Dioecy and chromosomal sex determination are maintained through allopolyploid speciation in the plant genus Mercurialis
M.A. Toups, B. Vicoso, J.R. Pannell, PLoS Genetics 18 (2022).
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M.A. Toups, B. Vicoso, J.R. Pannell, PLoS Genetics 18 (2022).
2022 | Conference Paper | IST-REx-ID: 11707 |

Local mending
A. Balliu, J. Hirvonen, D. Melnyk, D. Olivetti, J. Rybicki, J. Suomela, in:, M. Parter (Ed.), International Colloquium on Structural Information and Communication Complexity, Springer Nature, 2022, pp. 1–20.
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| arXiv
A. Balliu, J. Hirvonen, D. Melnyk, D. Olivetti, J. Rybicki, J. Suomela, in:, M. Parter (Ed.), International Colloquium on Structural Information and Communication Complexity, Springer Nature, 2022, pp. 1–20.
2022 | Journal Article | IST-REx-ID: 11701 |

Nonlinear parabolic stochastic evolution equations in critical spaces Part I. Stochastic maximal regularity and local existence
A. Agresti, M. Veraar, Nonlinearity 35 (2022) 4100–4210.
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| arXiv
A. Agresti, M. Veraar, Nonlinearity 35 (2022) 4100–4210.
2022 | Journal Article | IST-REx-ID: 11702 |

The "New Synthesis"
N.H. Barton, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
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N.H. Barton, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
2022 | Journal Article | IST-REx-ID: 11706 |

Asymmetric Ramsey properties of random graphs involving cliques and cycles
A. Liebenau, L. Mattos, W. Mendonca dos Santos, J. Skokan, Random Structures and Algorithms (2022).
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A. Liebenau, L. Mattos, W. Mendonca dos Santos, J. Skokan, Random Structures and Algorithms (2022).
2022 | Journal Article | IST-REx-ID: 11723 |

RALF1 peptide triggers biphasic root growth inhibition upstream of auxin biosynthesis
L. Li, H. Chen, S.S. Alotaibi, A. Pěnčík, M. Adamowski, O. Novák, J. Friml, Proceedings of the National Academy of Sciences 119 (2022).
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L. Li, H. Chen, S.S. Alotaibi, A. Pěnčík, M. Adamowski, O. Novák, J. Friml, Proceedings of the National Academy of Sciences 119 (2022).
2022 | Journal Article | IST-REx-ID: 11713 |

Quantifying heterologous gene expression during ectopic MazF production in Escherichia coli
N. Nikolic, M. Sauert, T.G. Albanese, I. Moll, BMC Research Notes 15 (2022).
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N. Nikolic, M. Sauert, T.G. Albanese, I. Moll, BMC Research Notes 15 (2022).
2022 | Journal Article | IST-REx-ID: 11717 |

Rigidity of Newton dynamics
K. Drach, D. Schleicher, Advances in Mathematics 408 (2022).
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K. Drach, D. Schleicher, Advances in Mathematics 408 (2022).
2022 | Journal Article | IST-REx-ID: 11732 |

The BCS energy gap at high density
S.J. Henheik, A.B. Lauritsen, Journal of Statistical Physics 189 (2022).
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S.J. Henheik, A.B. Lauritsen, Journal of Statistical Physics 189 (2022).
2022 | Journal Article | IST-REx-ID: 11704 |

An autonomous compartmental model for accelerating epidemics
N.B. Budanur, B. Hof, PLoS ONE 17 (2022).
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N.B. Budanur, B. Hof, PLoS ONE 17 (2022).
2022 | Research Data Reference | IST-REx-ID: 11711 |

burakbudanur/autoacc-public
N.B. Budanur, (2022).
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N.B. Budanur, (2022).
2022 | Journal Article | IST-REx-ID: 11734 |

Molecular framework integrating nitrate sensing in root and auxin-guided shoot adaptive responses
R. Abualia, K. Ötvös, O. Novák, E. Bouguyon, K. Domanegg, A. Krapp, P. Nacry, A. Gojon, B. Lacombe, E. Benková, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
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R. Abualia, K. Ötvös, O. Novák, E. Bouguyon, K. Domanegg, A. Krapp, P. Nacry, A. Gojon, B. Lacombe, E. Benková, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
2022 | Journal Article | IST-REx-ID: 11737 |

Universal transparency and asymmetric spin splitting near the Dirac point in HgTe quantum wells
U. Dziom, A. Shuvaev, J. Gospodarič, E.G. Novik, A.A. Dobretsova, N.N. Mikhailov, Z.D. Kvon, Z. Alpichshev, A. Pimenov, Physical Review B 106 (2022).
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U. Dziom, A. Shuvaev, J. Gospodarič, E.G. Novik, A.A. Dobretsova, N.N. Mikhailov, Z.D. Kvon, Z. Alpichshev, A. Pimenov, Physical Review B 106 (2022).
2022 | Journal Article | IST-REx-ID: 11739 |

Evolutionary $\Gamma$-convergence of entropic gradient flow structures for Fokker-Planck equations in multiple dimensions
D.L. Forkert, J. Maas, L. Portinale, SIAM Journal on Mathematical Analysis 54 (2022) 4297–4333.
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D.L. Forkert, J. Maas, L. Portinale, SIAM Journal on Mathematical Analysis 54 (2022) 4297–4333.
2022 | Journal Article | IST-REx-ID: 11740 |

Phase transition in cohomology groups of non-uniform random simplicial complexes
O. Cooley, N. Del Giudice, M. Kang, P. Sprüssel, Electronic Journal of Combinatorics 29 (2022).
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| arXiv
O. Cooley, N. Del Giudice, M. Kang, P. Sprüssel, Electronic Journal of Combinatorics 29 (2022).
2022 | Journal Article | IST-REx-ID: 11741 |

Quenched universality for deformed Wigner matrices
G. Cipolloni, L. Erdös, D.J. Schröder, Probability Theory and Related Fields (2022).
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G. Cipolloni, L. Erdös, D.J. Schröder, Probability Theory and Related Fields (2022).
2022 | Thesis | IST-REx-ID: 11777 |

High-dimensional expansion and crossing numbers of simplicial complexes
P. Wild, High-Dimensional Expansion and Crossing Numbers of Simplicial Complexes, Institute of Science and Technology (ISTA), 2022.
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P. Wild, High-Dimensional Expansion and Crossing Numbers of Simplicial Complexes, Institute of Science and Technology (ISTA), 2022.
2022 | Conference Paper | IST-REx-ID: 11775 |

Abstract monitors for quantitative specifications
T.A. Henzinger, N.A. Mazzocchi, N.E. Sarac, in:, 22nd International Conference on Runtime Verification, Springer Nature, 2022, pp. 200–220.
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T.A. Henzinger, N.A. Mazzocchi, N.E. Sarac, in:, 22nd International Conference on Runtime Verification, Springer Nature, 2022, pp. 200–220.
2022 | Journal Article | IST-REx-ID: 11783 |

Low-energy spectrum and dynamics of the weakly interacting Bose gas
L. Bossmann, Journal of Mathematical Physics 63 (2022).
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| arXiv
L. Bossmann, Journal of Mathematical Physics 63 (2022).
2022 | Journal Article | IST-REx-ID: 11842 |

Weak-strong uniqueness for the Navier–Stokes equation for two fluids with ninety degree contact angle and same viscosities
S. Hensel, A. Marveggio, Journal of Mathematical Fluid Mechanics 24 (2022).
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| arXiv
S. Hensel, A. Marveggio, Journal of Mathematical Fluid Mechanics 24 (2022).
2022 | Journal Article | IST-REx-ID: 11841
Adsorption free energy predicts amyloid protein nucleation rates
Z. Toprakcioglu, A. Kamada, T.C.T. Michaels, M. Xie, J. Krausser, J. Wei, A. Šarić, M. Vendruscolo, T.P.J. Knowles, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
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Z. Toprakcioglu, A. Kamada, T.C.T. Michaels, M. Xie, J. Krausser, J. Wei, A. Šarić, M. Vendruscolo, T.P.J. Knowles, Proceedings of the National Academy of Sciences of the United States of America 119 (2022).
2022 | Journal Article | IST-REx-ID: 11843 |

Type 1 piliated uropathogenic Escherichia coli hijack the host immune response by binding to CD14
K. Tomasek, A.F. Leithner, I. Glatzová, M.S. Lukesch, C.C. Guet, M.K. Sixt, ELife 11 (2022).
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K. Tomasek, A.F. Leithner, I. Glatzová, M.S. Lukesch, C.C. Guet, M.K. Sixt, ELife 11 (2022).
2022 | Conference Paper | IST-REx-ID: 11844 |

Near-optimal leader election in population protocols on graphs
D.-A. Alistarh, J. Rybicki, S. Voitovych, in:, Proceedings of the Annual ACM Symposium on Principles of Distributed Computing, 2022, pp. 246–256.
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D.-A. Alistarh, J. Rybicki, S. Voitovych, in:, Proceedings of the Annual ACM Symposium on Principles of Distributed Computing, 2022, pp. 246–256.
2022 | Journal Article | IST-REx-ID: 11858 |

Nonlinear parabolic stochastic evolution equations in critical spaces part II
A. Agresti, M. Veraar, Journal of Evolution Equations 22 (2022).
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A. Agresti, M. Veraar, Journal of Evolution Equations 22 (2022).
2022 | Thesis | IST-REx-ID: 11879
Modulation of auxin transport via ZF proteins adjust plant response to high ambient temperature
C. Artner, Modulation of Auxin Transport via ZF Proteins Adjust Plant Response to High Ambient Temperature, Institute of Science and Technology Austria, 2022.
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C. Artner, Modulation of Auxin Transport via ZF Proteins Adjust Plant Response to High Ambient Temperature, Institute of Science and Technology Austria, 2022.
2022 | Journal Article | IST-REx-ID: 11917 |

Large deviation estimates for weakly interacting bosons
S.A.E. Rademacher, R. Seiringer, Journal of Statistical Physics 188 (2022).
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S.A.E. Rademacher, R. Seiringer, Journal of Statistical Physics 188 (2022).
2022 | Journal Article | IST-REx-ID: 11916 |

Kac regularity and domination of quadratic forms
M. Wirth, Advances in Operator Theory 7 (2022).
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M. Wirth, Advances in Operator Theory 7 (2022).
2022 | Journal Article | IST-REx-ID: 11937 |

Thermodynamics of high-pressure ice phases explored with atomistic simulations
A. Reinhardt, M. Bethkenhagen, F. Coppari, M. Millot, S. Hamel, B. Cheng, Nature Communications 13 (2022).
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A. Reinhardt, M. Bethkenhagen, F. Coppari, M. Millot, S. Hamel, B. Cheng, Nature Communications 13 (2022).
2022 | Journal Article | IST-REx-ID: 11951 |

A direct excitatory projection from entorhinal layer 6b neurons to the hippocampus contributes to spatial coding and memory
Y. Ben Simon, K. Käfer, P. Velicky, J.L. Csicsvari, J.G. Danzl, P.M. Jonas, Nature Communications 13 (2022).
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Y. Ben Simon, K. Käfer, P. Velicky, J.L. Csicsvari, J.G. Danzl, P.M. Jonas, Nature Communications 13 (2022).
2022 | Journal Article | IST-REx-ID: 11993 |

State of the art in computational mould design
T. Alderighi, L. Malomo, T. Auzinger, B. Bickel, P. Cignoni, N. Pietroni, Computer Graphics Forum 41 (2022) 435–452.
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T. Alderighi, L. Malomo, T. Auzinger, B. Bickel, P. Cignoni, N. Pietroni, Computer Graphics Forum 41 (2022) 435–452.
2022 | Journal Article | IST-REx-ID: 11991 |

An invitation to the promise constraint satisfaction problem
A. Krokhin, J. Opršal, ACM SIGLOG News 9 (2022) 30–59.
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A. Krokhin, J. Opršal, ACM SIGLOG News 9 (2022) 30–59.
2022 | Journal Article | IST-REx-ID: 11998 |

A simple model for high rotational excitations of molecules in a superfluid
I. Cherepanov, G. Bighin, C.A. Schouder, A.S. Chatterley, H. Stapelfeldt, M. Lemeshko, New Journal of Physics 24 (2022).
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I. Cherepanov, G. Bighin, C.A. Schouder, A.S. Chatterley, H. Stapelfeldt, M. Lemeshko, New Journal of Physics 24 (2022).
2022 | Journal Article | IST-REx-ID: 11997 |

Impurity in a heteronuclear two-component Bose mixture
G. Bighin, A. Burchianti, F. Minardi, T. Macrì, Physical Review A 106 (2022).
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G. Bighin, A. Burchianti, F. Minardi, T. Macrì, Physical Review A 106 (2022).
2022 | Journal Article | IST-REx-ID: 11996
A soft active matter that can climb walls
J.A. Palacci, Science 377 (2022) 710–711.
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J.A. Palacci, Science 377 (2022) 710–711.
2022 | Conference Paper | IST-REx-ID: 12000 |

Sound and complete certificates for auantitative termination analysis of probabilistic programs
K. Chatterjee, A.K. Goharshady, T. Meggendorfer, D. Zikelic, in:, Proceedings of the 34th International Conference on Computer Aided Verification, Springer, 2022, pp. 55–78.
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K. Chatterjee, A.K. Goharshady, T. Meggendorfer, D. Zikelic, in:, Proceedings of the 34th International Conference on Computer Aided Verification, Springer, 2022, pp. 55–78.
2022 | Journal Article | IST-REx-ID: 12009 |

Developmental depression-to-facilitation shift controls excitation-inhibition balance
D.W. Jia, T.P. Vogels, R.P. Costa, Communications Biology 5 (2022).
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D.W. Jia, T.P. Vogels, R.P. Costa, Communications Biology 5 (2022).
2022 | Conference Paper | IST-REx-ID: 12010 |

Latent imagination facilitates zero-shot transfer in autonomous racing
A. Brunnbauer, L. Berducci, A. Brandstatter, M. Lechner, R. Hasani, D. Rus, R. Grosu, in:, 2022 International Conference on Robotics and Automation, IEEE, 2022, pp. 7513–7520.
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A. Brunnbauer, L. Berducci, A. Brandstatter, M. Lechner, R. Hasani, D. Rus, R. Grosu, in:, 2022 International Conference on Robotics and Automation, IEEE, 2022, pp. 7513–7520.
2022 | Conference Paper | IST-REx-ID: 12011 |

The capacity of causal adversarial channels
Y. Zhang, S. Jaggi, M. Langberg, A.D. Sarwate, in:, 2022 IEEE International Symposium on Information Theory, IEEE, 2022, pp. 2523–2528.
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Y. Zhang, S. Jaggi, M. Langberg, A.D. Sarwate, in:, 2022 IEEE International Symposium on Information Theory, IEEE, 2022, pp. 2523–2528.
2022 | Conference Paper | IST-REx-ID: 12017
New results on AVCs with omniscient and myopic adversaries
A.K. Yadav, M. Alimohammadi, Y. Zhang, A.J. Budkuley, S. Jaggi, in:, 2022 IEEE International Symposium on Information Theory, Institute of Electrical and Electronics Engineers, 2022, pp. 2535–2540.
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A.K. Yadav, M. Alimohammadi, Y. Zhang, A.J. Budkuley, S. Jaggi, in:, 2022 IEEE International Symposium on Information Theory, Institute of Electrical and Electronics Engineers, 2022, pp. 2535–2540.
2022 | Conference Paper | IST-REx-ID: 12013
On the capacity of additive AVCs with feedback
P. Joshi, A. Purkayastha, Y. Zhang, A.J. Budkuley, S. Jaggi, in:, 2022 IEEE International Symposium on Information Theory, IEEE, 2022, pp. 504–509.
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P. Joshi, A. Purkayastha, Y. Zhang, A.J. Budkuley, S. Jaggi, in:, 2022 IEEE International Symposium on Information Theory, IEEE, 2022, pp. 504–509.
2022 | Conference Paper | IST-REx-ID: 12016 |

Polar coded computing: The role of the scaling exponent
D. Fathollahi, M. Mondelli, in:, 2022 IEEE International Symposium on Information Theory, IEEE, 2022, pp. 2154–2159.
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D. Fathollahi, M. Mondelli, in:, 2022 IEEE International Symposium on Information Theory, IEEE, 2022, pp. 2154–2159.
2022 | Conference Paper | IST-REx-ID: 12012 |

Heterogeneous differential privacy via graphs
S. Torkamani, J.B. Ebrahimi, P. Sadeghi, R.G.L. D’Oliveira, M. Médard, in:, 2022 IEEE International Symposium on Information Theory, IEEE, 2022, pp. 1623–1628.
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S. Torkamani, J.B. Ebrahimi, P. Sadeghi, R.G.L. D’Oliveira, M. Médard, in:, 2022 IEEE International Symposium on Information Theory, IEEE, 2022, pp. 1623–1628.
2022 | Conference Paper | IST-REx-ID: 12018
Lower bounds on list decoding capacity using error exponents
Y. Zhang, S. Vatedka, in:, 2022 IEEE International Symposium on Information Theory, Institute of Electrical and Electronics Engineers, 2022, pp. 1324–1329.
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Y. Zhang, S. Vatedka, in:, 2022 IEEE International Symposium on Information Theory, Institute of Electrical and Electronics Engineers, 2022, pp. 1324–1329.
2022 | Conference Paper | IST-REx-ID: 12015
Lower bounds for multiple packing
Y. Zhang, S. Vatedka, in:, 2022 IEEE International Symposium on Information Theory, IEEE, 2022, pp. 3085–3090.
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Y. Zhang, S. Vatedka, in:, 2022 IEEE International Symposium on Information Theory, IEEE, 2022, pp. 3085–3090.
2022 | Conference Paper | IST-REx-ID: 12014
List-decodability of Poisson Point Processes
Y. Zhang, S. Vatedka, in:, 2022 IEEE International Symposium on Information Theory, IEEE, 2022, pp. 2559–2564.
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Y. Zhang, S. Vatedka, in:, 2022 IEEE International Symposium on Information Theory, IEEE, 2022, pp. 2559–2564.
2022 | Conference Paper | IST-REx-ID: 12019
List-decodable zero-rate codes for the Z-channel
N. Polyanskii, Y. Zhang, in:, 2022 IEEE International Symposium on Information Theory, Institute of Electrical and Electronics Engineers, 2022, pp. 2553–2558.
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N. Polyanskii, Y. Zhang, in:, 2022 IEEE International Symposium on Information Theory, Institute of Electrical and Electronics Engineers, 2022, pp. 2553–2558.
2022 | Journal Article | IST-REx-ID: 12051 |

The human RNA polymerase I structure reveals an HMG-like docking domain specific to metazoans
J.L. Daiß, M. Pilsl, K. Straub, A. Bleckmann, M. Höcherl, F.B. Heiss, G. Abascal-Palacios, E.P. Ramsay, K. Tluckova, J.-C. Mars, T. Fürtges, A. Bruckmann, T. Rudack, C. Bernecky, V. Lamour, K. Panov, A. Vannini, T. Moss, C. Engel, Life Science Alliance 5 (2022).
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J.L. Daiß, M. Pilsl, K. Straub, A. Bleckmann, M. Höcherl, F.B. Heiss, G. Abascal-Palacios, E.P. Ramsay, K. Tluckova, J.-C. Mars, T. Fürtges, A. Bruckmann, T. Rudack, C. Bernecky, V. Lamour, K. Panov, A. Vannini, T. Moss, C. Engel, Life Science Alliance 5 (2022).
2022 | Journal Article | IST-REx-ID: 12052 |

WAVY GROWTH Arabidopsis E3 ubiquitin ligases affect apical PIN sorting decisions
N. Konstantinova, L. Hörmayer, M. Glanc, R. Keshkeih, S. Tan, M. Di Donato, K. Retzer, J. Moulinier-Anzola, M. Schwihla, B. Korbei, M. Geisler, J. Friml, C. Luschnig, Nature Communications 13 (2022).
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N. Konstantinova, L. Hörmayer, M. Glanc, R. Keshkeih, S. Tan, M. Di Donato, K. Retzer, J. Moulinier-Anzola, M. Schwihla, B. Korbei, M. Geisler, J. Friml, C. Luschnig, Nature Communications 13 (2022).
2022 | Journal Article | IST-REx-ID: 12054 |

Structural insights into auxin recognition and efflux by Arabidopsis PIN1
Z. Yang, J. Xia, J. Hong, C. Zhang, H. Wei, W. Ying, C. Sun, L. Sun, Y. Mao, Y. Gao, S. Tan, J. Friml, D. Li, X. Liu, L. Sun, Nature 609 (2022) 611–615.
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Z. Yang, J. Xia, J. Hong, C. Zhang, H. Wei, W. Ying, C. Sun, L. Sun, Y. Mao, Y. Gao, S. Tan, J. Friml, D. Li, X. Liu, L. Sun, Nature 609 (2022) 611–615.
2022 | Journal Article | IST-REx-ID: 12065 |

Exclusive solution discharge in Li-O₂ batteries?
C. Prehal, S. Mondal, L. Lovicar, S.A. Freunberger, ACS Energy Letters 7 (2022) 3112–3119.
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C. Prehal, S. Mondal, L. Lovicar, S.A. Freunberger, ACS Energy Letters 7 (2022) 3112–3119.
2022 | Journal Article | IST-REx-ID: 12082 |

Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans
M. Artan, M. Hartl, W. Chen, M. de Bono, Journal of Biological Chemistry 298 (2022).
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M. Artan, M. Hartl, W. Chen, M. de Bono, Journal of Biological Chemistry 298 (2022).
2022 | Thesis | IST-REx-ID: 12072 |

Existence and density problems in Diophantine geometry: From norm forms to Campana points
A.L. Shute, Existence and Density Problems in Diophantine Geometry: From Norm Forms to Campana Points, Institute of Science and Technology Austria, 2022.
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A.L. Shute, Existence and Density Problems in Diophantine Geometry: From Norm Forms to Campana Points, Institute of Science and Technology Austria, 2022.
2022 | Journal Article | IST-REx-ID: 12079 |

Convergence rates for the Allen–Cahn equation with boundary contact energy: The non-perturbative regime
S. Hensel, M. Moser, Calculus of Variations and Partial Differential Equations 61 (2022).
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S. Hensel, M. Moser, Calculus of Variations and Partial Differential Equations 61 (2022).
2022 | Journal Article | IST-REx-ID: 12081 |

Accumulation and maintenance of information in evolution
M. Hledik, N.H. Barton, G. Tkačik, Proceedings of the National Academy of Sciences 119 (2022).
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M. Hledik, N.H. Barton, G. Tkačik, Proceedings of the National Academy of Sciences 119 (2022).
2022 | Journal Article | IST-REx-ID: 12083 |

Dependent random variables in quantum dynamics
S.A.E. Rademacher, Journal of Mathematical Physics 63 (2022).
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| arXiv
S.A.E. Rademacher, Journal of Mathematical Physics 63 (2022).