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137 Publications


2024 | Journal Article | IST-REx-ID: 14826 | OA
RAF-like protein kinases mediate a deeply conserved, rapid auxin response
A. Kuhn, M. Roosjen, S. Mutte, S.M. Dubey, V.P. Carrillo Carrasco, S. Boeren, A. Monzer, J. Koehorst, T. Kohchi, R. Nishihama, M. Fendrych, J. Sprakel, J. Friml, D. Weijers, Cell 187 (2024) 130–148.e17.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2024 | Journal Article | IST-REx-ID: 15033 | OA
Developmental patterning function of GNOM ARF-GEF mediated from the cell periphery
M. Adamowski, I. Matijevic, J. Friml, ELife 13 (2024).
[Published Version] View | DOI | Download Published Version (ext.)
 

2024 | Journal Article | IST-REx-ID: 15257 | OA [Published Version] View | Files available | DOI
 

2023 | Journal Article | IST-REx-ID: 12158 | OA
Single-cell sortChIC identifies hierarchical chromatin dynamics during hematopoiesis
P. Zeller, J. Yeung, H. Viñas Gaza, B.A. de Barbanson, V. Bhardwaj, M. Florescu, R. van der Linden, A. van Oudenaarden, Nature Genetics 55 (2023) 333–345.
[Published Version] View | Files available | DOI
 

2023 | Journal Article | IST-REx-ID: 12159 | OA
On the origin and structure of haplotype blocks
D. Shipilina, A. Pal, S. Stankowski, Y.F. Chan, N.H. Barton, Molecular Ecology 32 (2023) 1441–1457.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2023 | Journal Article | IST-REx-ID: 12163 | OA
In vitro reconstitution of small GTPase regulation
M. Loose, A. Auer, G. Brognara, H.R. Budiman, L.M. Kowalski, I. Matijevic, FEBS Letters 597 (2023) 762–777.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2023 | Journal Article | IST-REx-ID: 12521 | OA
Slower-X: Reduced efficiency of selection in the early stages of X chromosome evolution
A. Mrnjavac, K. Khudiakova, N.H. Barton, B. Vicoso, Evolution Letters 7 (2023).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2023 | Journal Article | IST-REx-ID: 13989 | OA
Witnessing light-driven entanglement using time-resolved resonant inelastic X-ray scattering
J. Hales, U. Bajpai, T. Liu, D.R. Baykusheva, M. Li, M. Mitrano, Y. Wang, Nature Communications 14 (2023).
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC | arXiv
 

2023 | Journal Article | IST-REx-ID: 14368 | OA
Clinical, neuroradiological, and molecular characterization of mitochondrial threonyl-tRNA-synthetase (TARS2)-related disorder
Accogli A, Lin S-J, Severino M, Kim S-H, Huang K, Rocca C, Landsverk M, Zaki MS, Al-Maawali A, Srinivasan VM, Al-Thihli K, Schaefer GB, Davis M, Tonduti D, Doneda C, Marten LM, Mühlhausen C, Gomez M, Lamantea E, Mena R, Nizon M, Procaccio V, Begtrup A, Telegrafi A, Cui H, Schulz HL, Mohr J, Biskup S, Loos MA, Aráoz HV, Salpietro V, Keppen LD, Chitre M, Petree C, Raymond L, Vogt J, Sawyer LB, Basinger AA, Pedersen SV, Pearson TS, Grange DK, Lingappa L, McDunnah P, Horvath R, Cognè B, Isidor B, Hahn A, Gripp KW, Jafarnejad SM, Østergaard E, Prada CE, Ghezzi D, Gowda VK, Taylor RW, Sonenberg N, Houlden H, Sissler M, Varshney GK, Maroofian R. 2023. Clinical, neuroradiological, and molecular characterization of mitochondrial threonyl-tRNA-synthetase (TARS2)-related disorder. Genetics in Medicine. 25(11), 100938.
[Published Version] View | Files available | DOI
 

2023 | Research Data | IST-REx-ID: 12949 | OA [Published Version] View | Files available | DOI
 

2023 | Journal Article | IST-REx-ID: 14639 | OA
Evaluating the association of biallelic OGDHL variants with significant phenotypic heterogeneity
Lin S-J, Vona B, Lau T, Huang K, Zaki MS, Aldeen HS, Karimiani EG, Rocca C, Noureldeen MM, Saad AK, Petree C, Bartolomaeus T, Abou Jamra R, Zifarelli G, Gotkhindikar A, Wentzensen IM, Liao M, Cork EE, Varshney P, Hashemi N, Mohammadi MH, Rad A, Neira J, Toosi MB, Knopp C, Kurth I, Challman TD, Smith R, Abdalla A, Haaf T, Suri M, Joshi M, Chung WK, Moreno-De-Luca A, Houlden H, Maroofian R, Varshney GK. 2023. Evaluating the association of biallelic OGDHL variants with significant phenotypic heterogeneity. Genome Medicine. 15, 102.
[Published Version] View | Files available | DOI
 

2023 | Journal Article | IST-REx-ID: 14077 | OA
Sex-specific estimation of cis and trans regulation of gene expression in heads and gonads of Drosophila melanogaster
G. Puixeu Sala, A. Macon, B. Vicoso, G3: Genes, Genomes, Genetics 13 (2023).
[Published Version] View | Files available | DOI | WoS
 

2023 | Journal Article | IST-REx-ID: 14683 | OA [Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 

2023 | Journal Article | IST-REx-ID: 14742 | OA
The impact of chromosomal rearrangements in speciation: From micro- to macroevolution
K. Lucek, M.D. Giménez, M. Joron, M. Rafajlović, J.B. Searle, N. Walden, A.M. Westram, R. Faria, Cold Spring Harbor Perspectives in Biology 15 (2023).
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2023 | Journal Article | IST-REx-ID: 14781 | OA
Spatial organization and function of RNA molecules within phase-separated condensates in zebrafish are controlled by Dnd1
K.J. Westerich, K. Tarbashevich, J. Schick, A. Gupta, M. Zhu, K. Hull, D. Romo, D. Zeuschner, M. Goudarzi, T. Gross-Thebing, E. Raz, Developmental Cell 58 (2023) 1578–1592.e5.
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC
 

2023 | Journal Article | IST-REx-ID: 14787 | OA
Integrating top‐down and bottom‐up approaches to understand the genetic architecture of speciation across a monkeyflower hybrid zone
S. Stankowski, M.A. Chase, H. McIntosh, M.A. Streisfeld, Molecular Ecology 32 (2023) 2041–2054.
[Preprint] View | DOI | Download Preprint (ext.) | WoS | PubMed | Europe PMC
 

2023 | Journal Article | IST-REx-ID: 12802 | OA
Large neutral amino acid levels tune perinatal neuronal excitability and survival
L. Knaus, B. Basilico, D. Malzl, M. Gerykova Bujalkova, M. Smogavec, L.A. Schwarz, S. Gorkiewicz, N. Amberg, F. Pauler, C. Knittl-Frank, M. Tassinari, N. Maulide, T. Rülicke, J. Menche, S. Hippenmeyer, G. Novarino, Cell 186 (2023) 1950–1967.e25.
[Published Version] View | Files available | DOI | WoS
 

2023 | Journal Article | IST-REx-ID: 14613 | OA
The scorpionfly (Panorpa cognata) genome highlights conserved and derived features of the peculiar dipteran X chromosome
C. Lasne, M.N. Elkrewi, M.A. Toups, L.A. Layana Franco, A. Macon, B. Vicoso, Molecular Biology and Evolution 40 (2023).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 11713 | OA
Quantifying heterologous gene expression during ectopic MazF production in Escherichia coli
N. Nikolic, M. Sauert, T.G. Albanese, I. Moll, BMC Research Notes 15 (2022).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 12156 | OA
Eukaryotic gene regulation at equilibrium, or non?
B. Zoller, T. Gregor, G. Tkačik, Current Opinion in Systems Biology 31 (2022).
[Published Version] View | Files available | DOI
 

2022 | Journal Article | IST-REx-ID: 12670 | OA
DNA methylation dynamics during germline development
S. He, X. Feng, Journal of Integrative Plant Biology 64 (2022) 2240–2251.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 10604 | OA [Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 11351 | OA
Cryo-electron tomography of the onion cell wall shows bimodally oriented cellulose fibers and reticulated homogalacturonan networks
W.J. Nicolas, F. Fäßler, P. Dutka, F.K. Schur, G. Jensen, E. Meyerowitz, Current Biology 32 (2022) P2375-2389.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 11448 | OA
Heterogeneity of the GFP fitness landscape and data-driven protein design
L. Gonzalez Somermeyer, A. Fleiss, A.S. Mishin, N.G. Bozhanova, A.A. Igolkina, J. Meiler, M.-E. Alaball Pujol, E.V. Putintseva, K.S. Sarkisyan, F. Kondrashov, ELife 11 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 11447 | OA
Relation between the number of peaks and the number of reciprocal sign epistatic interactions
R.J. Saona Urmeneta, F. Kondrashov, K. Khudiakova, Bulletin of Mathematical Biology 84 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 11546 | OA
Inversions and parallel evolution
A.M. Westram, R. Faria, K. Johannesson, R. Butlin, N.H. Barton, Philosophical Transactions of the Royal Society B: Biological Sciences 377 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 11951 | OA
A direct excitatory projection from entorhinal layer 6b neurons to the hippocampus contributes to spatial coding and memory
Y. Ben Simon, K. Käfer, P. Velicky, J.L. Csicsvari, J.G. Danzl, P.M. Jonas, Nature Communications 13 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 12051 | OA
The human RNA polymerase I structure reveals an HMG-like docking domain specific to metazoans
J.L. Daiß, M. Pilsl, K. Straub, A. Bleckmann, M. Höcherl, F.B. Heiss, G. Abascal-Palacios, E.P. Ramsay, K. Tluckova, J.-C. Mars, T. Fürtges, A. Bruckmann, T. Rudack, C. Bernecky, V. Lamour, K. Panov, A. Vannini, T. Moss, C. Engel, Life Science Alliance 5 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 12130 | OA
Specification of female germline by microRNA orchestrated auxin signaling in Arabidopsis
J. Huang, L. Zhao, S. Malik, B.R. Gentile, V. Xiong, T. Arazi, H.A. Owen, J. Friml, D. Zhao, Nature Communications 13 (2022).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 12142 | OA
Liability-scale heritability estimation for biobank studies of low-prevalence disease
S.E. Ojavee, Z. Kutalik, M.R. Robinson, The American Journal of Human Genetics 109 (2022) 2009–2017.
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 12152 | OA
Modelling membrane reshaping by staged polymerization of ESCRT-III filaments
X. Jiang, L. Harker-Kirschneck, C.E. Vanhille-Campos, A.-K. Pfitzner, E. Lominadze, A. Roux, B. Baum, A. Šarić, PLOS Computational Biology 18 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 12157 | OA
Polygenic adaptation after a sudden change in environment
L. Hayward, G. Sella, ELife 11 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 12166 | OA
Professor Kerstin Johannesson–winner of the 2022 Molecular Ecology Prize
A.M. Westram, R. Butlin, Molecular Ecology 32 (2022) 26–29.
[Published Version] View | DOI | Download Published Version (ext.) | WoS
 

2022 | Journal Article | IST-REx-ID: 12208 | OA
On the nanoscale structural evolution of solid discharge products in lithium-sulfur batteries using operando scattering
C. Prehal, J.-M. von Mentlen, S. Drvarič Talian, A. Vizintin, R. Dominko, H. Amenitsch, L. Porcar, S.A. Freunberger, V. Wood, Nature Communications 13 (2022).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 12217 | OA
Spatiotemporal dynamics of self-organized branching in pancreas-derived organoids
S. Randriamanantsoa, A. Papargyriou, H.C. Maurer, K. Peschke, M. Schuster, G. Zecchin, K. Steiger, R. Öllinger, D. Saur, C. Scheel, R. Rad, E.B. Hannezo, M. Reichert, A.R. Bausch, Nature Communications 13 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 12224 | OA
Muskelin regulates actin-dependent synaptic changes and intrinsic brain activity relevant to behavioral and cognitive processes
M.W. Muhia, P. YuanXiang, J. Sedlacik, J.R. Schwarz, F.F. Heisler, K.V. Gromova, E. Thies, P. Breiden, Y. Pechmann, M.R. Kreutz, M. Kneussel, Communications Biology 5 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 12234 | OA
Digest: On the origin of a possible hybrid species
S. Stankowski, Evolution 76 (2022) 2784–2785.
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 12247 | OA
Genetic architecture of repeated phenotypic divergence in Littorina saxatilis evolution
E.L. Koch, M. Ravinet, A.M. Westram, K. Johannesson, R.K. Butlin, Evolution 76 (2022) 2332–2346.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 12238
A feedback loop between lamellipodial extension and HGF-ERK signaling specifies leader cells during collective cell migration
N. Hino, K. Matsuda, Y. Jikko, G. Maryu, K. Sakai, R. Imamura, S. Tsukiji, K. Aoki, K. Terai, T. Hirashima, X. Trepat, M. Matsuda, Developmental Cell 57 (2022) 2290–2304.e7.
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2022 | Journal Article | IST-REx-ID: 12261 | OA
Growth‐mediated negative feedback shapes quantitative antibiotic response
A. Angermayr, T.Y. Pang, G. Chevereau, K. Mitosch, M.J. Lercher, M.T. Bollenbach, Molecular Systems Biology 18 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 12288 | OA [Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 12280 | OA
Direct reciprocity between individuals that use different strategy spaces
L. Schmid, C. Hilbe, K. Chatterjee, M. Nowak, PLOS Computational Biology 18 (2022).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 12275 | OA
Specific N-glycans regulate an extracellular adhesion complex during somatosensory dendrite patterning
M. Rahman, N. Ramirez, C.A. Diaz‐Balzac, H.E. Bülow, EMBO Reports 23 (2022).
[Published Version] View | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 12120
Nitrate availability controls translocation of the transcription factor NAC075 for cell-type-specific reprogramming of root growth
H. Xiao, Y. Hu, Y. Wang, J. Cheng, J. Wang, G. Chen, Q. Li, S. Wang, Y. Wang, S.-S. Wang, Y. Wang, W. Xuan, Z. Li, Y. Guo, Z. Gong, J. Friml, J. Zhang, Developmental Cell 57 (2022) 2638–2651.e6.
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2022 | Journal Article | IST-REx-ID: 12117 | OA [Published Version] View | Files available | DOI
 

2022 | Journal Article | IST-REx-ID: 11373 | OA
In vitro reconstitution of Escherichia coli divisome activation
P. Radler, N.S. Baranova, P.R. Dos Santos Caldas, C.M. Sommer, M.D. Lopez Pelegrin, D. Michalik, M. Loose, Nature Communications 13 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 10787 | OA
The response of a metapopulation to a changing environment
N.H. Barton, O.O. Olusanya, Philosophical Transactions of the Royal Society B: Biological Sciences 377 (2022).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 11160 | OA
CHD8 haploinsufficiency links autism to transient alterations in excitatory and inhibitory trajectories
C.E. Villa, C. Cheroni, C. Dotter, A. López-Tóbon, B. Oliveira, R. Sacco, A.Ç. Yahya, J. Morandell, M. Gabriele, M. Tavakoli, J. Lyudchik, C.M. Sommer, M. Gabitto, J.G. Danzl, G. Testa, G. Novarino, Cell Reports 39 (2022).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 12248 | OA
ZW sex-chromosome evolution and contagious parthenogenesis in Artemia brine shrimp
M.N. Elkrewi, U. Khauratovich, M.A. Toups, V.K. Bett, A. Mrnjavac, A. Macon, C. Fraisse, L. Sax, A.K. Huylmans, F. Hontoria, B. Vicoso, Genetics 222 (2022).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2021 | Journal Article | IST-REx-ID: 11052
Identification of long-lived proteins in the mitochondria reveals increased stability of the electron transport chain
S. Krishna, R. Arrojo e Drigo, J.S. Capitanio, R. Ramachandra, M. Ellisman, M. Hetzer, Developmental Cell 56 (2021) P2952–2965.e9.
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