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144 Publications


2024 | Journal Article | IST-REx-ID: 14826 | OA
RAF-like protein kinases mediate a deeply conserved, rapid auxin response
A. Kuhn, M. Roosjen, S. Mutte, S.M. Dubey, V.P. Carrillo Carrasco, S. Boeren, A. Monzer, J. Koehorst, T. Kohchi, R. Nishihama, M. Fendrych, J. Sprakel, J. Friml, D. Weijers, Cell 187 (2024) 130–148.e17.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2024 | Journal Article | IST-REx-ID: 14850 | OA
Too much information? Males convey parasite levels using more signal modalities than females utilise
A. Pal, M. Joshi, M. Thaker, Journal of Experimental Biology 227 (2024).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2024 | Journal Article | IST-REx-ID: 15033 | OA
Developmental patterning function of GNOM ARF-GEF mediated from the cell periphery
M. Adamowski, I. Matijevic, J. Friml, ELife 13 (2024).
[Published Version] View | DOI | Download Published Version (ext.)
 

2024 | Journal Article | IST-REx-ID: 14979 | OA
Multi-modal cryo-EM reveals trimers of protein A10 to form the palisade layer in poxvirus cores
J. Datler, J. Hansen, A. Thader, A. Schlögl, L.W. Bauer, V.-V. Hodirnau, F.K. Schur, Nature Structural & Molecular Biology (2024).
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2024 | Journal Article | IST-REx-ID: 15257 | OA
Rapid translocation of NGR proteins driving polarization of PIN-activating D6 protein kinase during root gravitropism
I. Kulich, J. Schmid, A. Teplova, L. Qi, J. Friml, ELife 12 (2024).
[Published Version] View | Files available | DOI
 

2023 | Journal Article | IST-REx-ID: 12163 | OA
In vitro reconstitution of small GTPase regulation
M. Loose, A. Auer, G. Brognara, H.R. Budiman, L.M. Kowalski, I. Matijevic, FEBS Letters 597 (2023) 762–777.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2023 | Journal Article | IST-REx-ID: 13989 | OA
Witnessing light-driven entanglement using time-resolved resonant inelastic X-ray scattering
J. Hales, U. Bajpai, T. Liu, D.R. Baykusheva, M. Li, M. Mitrano, Y. Wang, Nature Communications 14 (2023).
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC | arXiv
 

2023 | Journal Article | IST-REx-ID: 14639 | OA
Evaluating the association of biallelic OGDHL variants with significant phenotypic heterogeneity
Lin S-J, Vona B, Lau T, Huang K, Zaki MS, Aldeen HS, Karimiani EG, Rocca C, Noureldeen MM, Saad AK, Petree C, Bartolomaeus T, Abou Jamra R, Zifarelli G, Gotkhindikar A, Wentzensen IM, Liao M, Cork EE, Varshney P, Hashemi N, Mohammadi MH, Rad A, Neira J, Toosi MB, Knopp C, Kurth I, Challman TD, Smith R, Abdalla A, Haaf T, Suri M, Joshi M, Chung WK, Moreno-De-Luca A, Houlden H, Maroofian R, Varshney GK. 2023. Evaluating the association of biallelic OGDHL variants with significant phenotypic heterogeneity. Genome Medicine. 15, 102.
[Published Version] View | Files available | DOI
 

2023 | Journal Article | IST-REx-ID: 14077 | OA
Sex-specific estimation of cis and trans regulation of gene expression in heads and gonads of Drosophila melanogaster
G. Puixeu Sala, A. Macon, B. Vicoso, G3: Genes, Genomes, Genetics 13 (2023).
[Published Version] View | Files available | DOI | WoS
 

2023 | Journal Article | IST-REx-ID: 14683 | OA
Protocol for sorting cells from mouse brains labeled with mosaic analysis with double markers by flow cytometry
N. Amberg, G.T. Cheung, S. Hippenmeyer, STAR Protocols 5 (2023).
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 

2023 | Journal Article | IST-REx-ID: 14742 | OA
The impact of chromosomal rearrangements in speciation: From micro- to macroevolution
K. Lucek, M.D. Giménez, M. Joron, M. Rafajlović, J.B. Searle, N. Walden, A.M. Westram, R. Faria, Cold Spring Harbor Perspectives in Biology 15 (2023).
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2023 | Journal Article | IST-REx-ID: 14770
LIONESS enables 4D nanoscale reconstruction of living brain tissue
J.G. Danzl, P. Velicky, Nature Methods 20 (2023) 1141–1142.
View | Files available | DOI | WoS
 

2023 | Journal Article | IST-REx-ID: 14774 | OA
Real-time monitoring of an endogenous Fgf8a gradient attests to its role as a morphogen during zebrafish gastrulation
R.K. Harish, M. Gupta, D. Zöller, H. Hartmann, A. Gheisari, A. Machate, S. Hans, M. Brand, Development 150 (2023).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2023 | Journal Article | IST-REx-ID: 14776 | OA
Phytaspase Is capable of detaching the endoplasmic reticulum retrieval signal from tobacco calreticulin-3
A. Teplova, A.A. Pigidanov, M.V. Serebryakova, S.A. Golyshev, R.A. Galiullina, N.V. Chichkova, A.B. Vartapetian, International Journal of Molecular Sciences 24 (2023).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2023 | Journal Article | IST-REx-ID: 14781 | OA
Spatial organization and function of RNA molecules within phase-separated condensates in zebrafish are controlled by Dnd1
K.J. Westerich, K. Tarbashevich, J. Schick, A. Gupta, M. Zhu, K. Hull, D. Romo, D. Zeuschner, M. Goudarzi, T. Gross-Thebing, E. Raz, Developmental Cell 58 (2023) 1578–1592.e5.
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC
 

2023 | Journal Article | IST-REx-ID: 12802 | OA
Large neutral amino acid levels tune perinatal neuronal excitability and survival
L. Knaus, B. Basilico, D. Malzl, M. Gerykova Bujalkova, M. Smogavec, L.A. Schwarz, S. Gorkiewicz, N. Amberg, F. Pauler, C. Knittl-Frank, M. Tassinari, N. Maulide, T. Rülicke, J. Menche, S. Hippenmeyer, G. Novarino, Cell 186 (2023) 1950–1967.e25.
[Published Version] View | Files available | DOI | WoS
 

2023 | Journal Article | IST-REx-ID: 14613 | OA
The scorpionfly (Panorpa cognata) genome highlights conserved and derived features of the peculiar dipteran X chromosome
C. Lasne, M.N. Elkrewi, M.A. Toups, L.A. Layana Franco, A. Macon, B. Vicoso, Molecular Biology and Evolution 40 (2023).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2023 | Journal Article | IST-REx-ID: 15149 | OA
Readout of histone methylation by Trim24 locally restricts chromatin opening by p53
L. Isbel, M. Iskar, S. Durdu, J. Weiss, R.S. Grand, E. Hietter-Pfeiffer, Z. Kozicka, A.K. Michael, L. Burger, N.H. Thomä, D. Schübeler, Nature Structural & Molecular Biology 30 (2023) 948–957.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 11713 | OA
Quantifying heterologous gene expression during ectopic MazF production in Escherichia coli
N. Nikolic, M. Sauert, T.G. Albanese, I. Moll, BMC Research Notes 15 (2022).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 12156 | OA
Eukaryotic gene regulation at equilibrium, or non?
B. Zoller, T. Gregor, G. Tkačik, Current Opinion in Systems Biology 31 (2022).
[Published Version] View | Files available | DOI
 

2022 | Journal Article | IST-REx-ID: 12670 | OA
DNA methylation dynamics during germline development
S. He, X. Feng, Journal of Integrative Plant Biology 64 (2022) 2240–2251.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 11167 | OA
Structure of respiratory complex I – An emerging blueprint for the mechanism
D. Kampjut, L.A. Sazanov, Current Opinion in Structural Biology 74 (2022).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 11351 | OA
Cryo-electron tomography of the onion cell wall shows bimodally oriented cellulose fibers and reticulated homogalacturonan networks
W.J. Nicolas, F. Fäßler, P. Dutka, F.K. Schur, G. Jensen, E. Meyerowitz, Current Biology 32 (2022) P2375-2389.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 11460 | OA
WDFY3 mutation alters laminar position and morphology of cortical neurons
Z.A. Schaaf, L. Tat, N. Cannizzaro, R. Green, T. Rülicke, S. Hippenmeyer, K.S. Zarbalis, Molecular Autism 13 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 11448 | OA
Heterogeneity of the GFP fitness landscape and data-driven protein design
L. Gonzalez Somermeyer, A. Fleiss, A.S. Mishin, N.G. Bozhanova, A.A. Igolkina, J. Meiler, M.-E. Alaball Pujol, E.V. Putintseva, K.S. Sarkisyan, F. Kondrashov, ELife 11 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 11447 | OA
Relation between the number of peaks and the number of reciprocal sign epistatic interactions
R.J. Saona Urmeneta, F. Kondrashov, K. Khudiakova, Bulletin of Mathematical Biology 84 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 11546 | OA
Inversions and parallel evolution
A.M. Westram, R. Faria, K. Johannesson, R. Butlin, N.H. Barton, Philosophical Transactions of the Royal Society B: Biological Sciences 377 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 11951 | OA
A direct excitatory projection from entorhinal layer 6b neurons to the hippocampus contributes to spatial coding and memory
Y. Ben Simon, K. Käfer, P. Velicky, J.L. Csicsvari, J.G. Danzl, P.M. Jonas, Nature Communications 13 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 12051 | OA
The human RNA polymerase I structure reveals an HMG-like docking domain specific to metazoans
J.L. Daiß, M. Pilsl, K. Straub, A. Bleckmann, M. Höcherl, F.B. Heiss, G. Abascal-Palacios, E.P. Ramsay, K. Tluckova, J.-C. Mars, T. Fürtges, A. Bruckmann, T. Rudack, C. Bernecky, V. Lamour, K. Panov, A. Vannini, T. Moss, C. Engel, Life Science Alliance 5 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 12130 | OA
Specification of female germline by microRNA orchestrated auxin signaling in Arabidopsis
J. Huang, L. Zhao, S. Malik, B.R. Gentile, V. Xiong, T. Arazi, H.A. Owen, J. Friml, D. Zhao, Nature Communications 13 (2022).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 12143 | OA
Structural and functional basis of mammalian microRNA biogenesis by Dicer
Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O’Carroll D, Stefl R, Svoboda P. 2022. Structural and functional basis of mammalian microRNA biogenesis by Dicer. Molecular Cell. 82(21), 4064–4079.e13.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 12152 | OA
Modelling membrane reshaping by staged polymerization of ESCRT-III filaments
X. Jiang, L. Harker-Kirschneck, C.E. Vanhille-Campos, A.-K. Pfitzner, E. Lominadze, A. Roux, B. Baum, A. Šarić, PLOS Computational Biology 18 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 12157 | OA
Polygenic adaptation after a sudden change in environment
L. Hayward, G. Sella, ELife 11 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 12208 | OA
On the nanoscale structural evolution of solid discharge products in lithium-sulfur batteries using operando scattering
C. Prehal, J.-M. von Mentlen, S. Drvarič Talian, A. Vizintin, R. Dominko, H. Amenitsch, L. Porcar, S.A. Freunberger, V. Wood, Nature Communications 13 (2022).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 12217 | OA
Spatiotemporal dynamics of self-organized branching in pancreas-derived organoids
S. Randriamanantsoa, A. Papargyriou, H.C. Maurer, K. Peschke, M. Schuster, G. Zecchin, K. Steiger, R. Öllinger, D. Saur, C. Scheel, R. Rad, E.B. Hannezo, M. Reichert, A.R. Bausch, Nature Communications 13 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 12224 | OA
Muskelin regulates actin-dependent synaptic changes and intrinsic brain activity relevant to behavioral and cognitive processes
M.W. Muhia, P. YuanXiang, J. Sedlacik, J.R. Schwarz, F.F. Heisler, K.V. Gromova, E. Thies, P. Breiden, Y. Pechmann, M.R. Kreutz, M. Kneussel, Communications Biology 5 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 12231 | OA
Admp regulates tail bending by controlling ventral epidermal cell polarity via phosphorylated myosin localization in Ciona
Y.S. Kogure, H. Muraoka, W.C. Koizumi, R. Gelin-alessi, B.G. Godard, K. Oka, C.-P.J. Heisenberg, K. Hotta, Development 149 (2022).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 12239 | OA
Three-dimensional visualization of planta clathrin-coated vesicles at ultrastructural resolution
A.J. Johnson, W. Kaufmann, C.M. Sommer, T. Costanzo, D.A. Dahhan, S.Y. Bednarek, J. Friml, Molecular Plant 15 (2022) 1533–1542.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 12245 | OA
Sequential and additive expression of miR-9 precursors control timing of neurogenesis
X. Soto, J. Burton, C.S. Manning, T. Minchington, R. Lea, J. Lee, J. Kursawe, M. Rattray, N. Papalopulu, Development 149 (2022).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 12238
A feedback loop between lamellipodial extension and HGF-ERK signaling specifies leader cells during collective cell migration
N. Hino, K. Matsuda, Y. Jikko, G. Maryu, K. Sakai, R. Imamura, S. Tsukiji, K. Aoki, K. Terai, T. Hirashima, X. Trepat, M. Matsuda, Developmental Cell 57 (2022) 2290–2304.e7.
View | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 12261 | OA
Growth‐mediated negative feedback shapes quantitative antibiotic response
A. Angermayr, T.Y. Pang, G. Chevereau, K. Mitosch, M.J. Lercher, M.T. Bollenbach, Molecular Systems Biology 18 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 12262 | OA
Visualizing maturation factor extraction from the nascent ribosome by the AAA-ATPase Drg1
M. Prattes, I. Grishkovskaya, V.-V. Hodirnau, C. Hetzmannseder, G. Zisser, C. Sailer, V. Kargas, M. Loibl, M. Gerhalter, L. Kofler, A.J. Warren, F. Stengel, D. Haselbach, H. Bergler, Nature Structural & Molecular Biology 29 (2022) 942–953.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 12288 | OA
Fast, high-throughput production of improved rabies viral vectors for specific, efficient and versatile transsynaptic retrograde labeling
A.L. Sumser, M.A. Jösch, P.M. Jonas, Y. Ben Simon, ELife 11 (2022).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 12280 | OA
Direct reciprocity between individuals that use different strategy spaces
L. Schmid, C. Hilbe, K. Chatterjee, M. Nowak, PLOS Computational Biology 18 (2022).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 12275 | OA
Specific N-glycans regulate an extracellular adhesion complex during somatosensory dendrite patterning
M. Rahman, N. Ramirez, C.A. Diaz‐Balzac, H.E. Bülow, EMBO Reports 23 (2022).
[Published Version] View | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 12120
Nitrate availability controls translocation of the transcription factor NAC075 for cell-type-specific reprogramming of root growth
H. Xiao, Y. Hu, Y. Wang, J. Cheng, J. Wang, G. Chen, Q. Li, S. Wang, Y. Wang, S.-S. Wang, Y. Wang, W. Xuan, Z. Li, Y. Guo, Z. Gong, J. Friml, J. Zhang, Developmental Cell 57 (2022) 2638–2651.e6.
View | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 12117 | OA
Assessing human iPSC-derived microglia identity and function by immunostaining, phagocytosis, calcium activity, and inflammation assay
V. Hübschmann, M. Korkut, S. Siegert, STAR Protocols 3 (2022).
[Published Version] View | Files available | DOI
 

2022 | Journal Article | IST-REx-ID: 11373 | OA
In vitro reconstitution of Escherichia coli divisome activation
P. Radler, N.S. Baranova, P.R. Dos Santos Caldas, C.M. Sommer, M.D. Lopez Pelegrin, D. Michalik, M. Loose, Nature Communications 13 (2022).
[Published Version] View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 10787 | OA
The response of a metapopulation to a changing environment
N.H. Barton, O.O. Olusanya, Philosophical Transactions of the Royal Society B: Biological Sciences 377 (2022).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 11160 | OA
CHD8 haploinsufficiency links autism to transient alterations in excitatory and inhibitory trajectories
C.E. Villa, C. Cheroni, C. Dotter, A. López-Tóbon, B. Oliveira, R. Sacco, A.Ç. Yahya, J. Morandell, M. Gabriele, M. Tavakoli, J. Lyudchik, C.M. Sommer, M. Gabitto, J.G. Danzl, G. Testa, G. Novarino, Cell Reports 39 (2022).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2021 | Journal Article | IST-REx-ID: 11052
Identification of long-lived proteins in the mitochondria reveals increased stability of the electron transport chain
S. Krishna, R. Arrojo e Drigo, J.S. Capitanio, R. Ramachandra, M. Ellisman, M. Hetzer, Developmental Cell 56 (2021) P2952–2965.e9.
View | DOI | PubMed | Europe PMC
 

2021 | Journal Article | IST-REx-ID: 12585 | OA
Health and sustainability of glaciers in High Mountain Asia
E. Miles, M. McCarthy, A. Dehecq, M. Kneib, S. Fugger, F. Pellicciotti, Nature Communications 12 (2021).
[Published Version] View | DOI | Download Published Version (ext.)
 

2021 | Journal Article | IST-REx-ID: 13356 | OA
Morphology control in crystalline nanoparticle–polymer aggregates
T. Bian, R. Klajn, Annals of the New York Academy of Sciences 1505 (2021) 191–201.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2021 | Journal Article | IST-REx-ID: 8966 | OA
Reassembling gastrulation
A. Schauer, C.-P.J. Heisenberg, Developmental Biology 474 (2021) 71–81.
[Published Version] View | Files available | DOI | WoS
 

2021 | Journal Article | IST-REx-ID: 9387 | OA
Two linked loci under mutation-selection balance and Muller’s ratchet
K. Khudiakova, T.Y. Neretina, A.S. Kondrashov, Journal of Theoretical Biology 524 (2021).
[Preprint] View | DOI | Download Preprint (ext.) | WoS
 

2021 | Journal Article | IST-REx-ID: 9431 | OA
Structure of the mature Rous sarcoma virus lattice reveals a role for IP6 in the formation of the capsid hexamer
M. Obr, C.L. Ricana, N. Nikulin, J.-P.R. Feathers, M. Klanschnig, A. Thader, M.C. Johnson, V.M. Vogt, F.K. Schur, R.A. Dick, Nature Communications 12 (2021).
[Published Version] View | Files available | DOI | WoS
 

2021 | Journal Article | IST-REx-ID: 9540 | OA
Structural basis for inhibition of the AAA-ATPase Drg1 by diazaborine
M. Prattes, I. Grishkovskaya, V.-V. Hodirnau, I. Rössler, I. Klein, C. Hetzmannseder, G. Zisser, C.C. Gruber, K. Gruber, D. Haselbach, H. Bergler, Nature Communications 12 (2021).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2021 | Journal Article | IST-REx-ID: 9778 | OA
Transsynaptic modulation of presynaptic short-term plasticity in hippocampal mossy fiber synapses
D.H. Vandael, Y. Okamoto, P.M. Jonas, Nature Communications 12 (2021).
[Published Version] View | Files available | DOI | WoS
 

2021 | Journal Article | IST-REx-ID: 10163 | OA
PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC
Appel L-M, Franke V, Bruno M, Grishkovskaya I, Kasiliauskaite A, Kaufmann T, Schoeberl UE, Puchinger MG, Kostrhon S, Ebenwaldner C, Sebesta M, Beltzung E, Mechtler K, Lin G, Vlasova A, Leeb M, Pavri R, Stark A, Akalin A, Stefl R, Bernecky C, Djinovic-Carugo K, Slade D. 2021. PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC. Nature Communications. 12(1), 6078.
[Published Version] View | Files available | DOI | WoS
 

2021 | Journal Article | IST-REx-ID: 10301 | OA
Control of protein synthesis and memory by GluN3A-NMDA receptors through inhibition of GIT1/mTORC1 assembly
M.J. Conde-Dusman, P.N. Dey, Ó. Elía-Zudaire, L.E. Garcia Rabaneda, C. García-Lira, T. Grand, V. Briz, E.R. Velasco, R. Andero Galí, S. Niñerola, A. Barco, P. Paoletti, J.F. Wesseling, F. Gardoni, S.J. Tavalin, I. Perez-Otaño, ELife 10 (2021).
[Published Version] View | Files available | DOI | WoS
 

2021 | Journal Article | IST-REx-ID: 10310 | OA
Cryo-EM structure of a functional monomeric Photosystem I from Thermosynechococcus elongatus reveals red chlorophyll cluster
M.O. Çoruh, A. Frank, H. Tanaka, A. Kawamoto, E. El-Mohsnawy, T. Kato, K. Namba, C. Gerle, M.M. Nowaczyk, G. Kurisu, Communications Biology 4 (2021).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2021 | Journal Article | IST-REx-ID: 10533 | OA
Histone H1 prevents non-CG methylation-mediated small RNA biogenesis in Arabidopsis heterochromatin
J. Choi, D.B. Lyons, D. Zilberman, ELife 10 (2021).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

2021 | Journal Article | IST-REx-ID: 10834 | OA
Loss of Hem1 disrupts macrophage function and impacts migration, phagocytosis, and integrin-mediated adhesion
S. Stahnke, H. Döring, C. Kusch, D.J.J. de Gorter, S. Dütting, A. Guledani, I. Pleines, M. Schnoor, M.K. Sixt, R. Geffers, M. Rohde, M. Müsken, F. Kage, A. Steffen, J. Faix, B. Nieswandt, K. Rottner, T.E.B. Stradal, Current Biology 31 (2021) 2051–2064.e8.
[Preprint] View | DOI | Download Preprint (ext.) | WoS | PubMed | Europe PMC
 

2021 | Journal Article | IST-REx-ID: 8997 | OA
Minimal biophysical model of combined antibiotic action
B. Kavcic, G. Tkačik, M.T. Bollenbach, PLOS Computational Biology 17 (2021).
[Published Version] View | Files available | DOI | WoS
 

2021 | Journal Article | IST-REx-ID: 9283 | OA
Local genetic context shapes the function of a gene regulatory network
A.A. Nagy-Staron, K. Tomasek, C. Caruso Carter, E. Sonnleitner, B. Kavcic, T. Paixão, C.C. Guet, ELife 10 (2021).
[Published Version] View | Files available | DOI | WoS
 

2021 | Journal Article | IST-REx-ID: 15151 | OA
Reading the chromatinized genome
A.K. Michael, N.H. Thomä, Cell 184 (2021) 3599–3611.
[Published Version] View | DOI | Download Published Version (ext.)
 

2021 | Journal Article | IST-REx-ID: 15262 | OA
Dynamics of hunchback translation in real-time and at single-mRNA resolution in the Drosophila embryo
D.J. Vinter, C. Hoppe, T. Minchington, C. Sutcliffe, H.L. Ashe, Development 148 (2021).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2021 | Journal Article | IST-REx-ID: 15276 | OA
The Pleiades are a cluster of fungal effectors that inhibit host defenses
F. Navarrete, N. Grujic, A. Stirnberg, I. Saado, D. Aleksza, M.C. Gallei, H. Adi, A. Alcântara, M. Khan, J. Bindics, M. Trujillo, A. Djamei, PLOS Pathogens 17 (2021).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2021 | Journal Article | IST-REx-ID: 15273 | OA
Incomplete removal of extracellular glutamate controls synaptic transmission and integration at a cerebellar synapse
T.S. Balmer, C. Borges Merjane, L.O. Trussell, ELife 10 (2021).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2021 | Journal Article | IST-REx-ID: 15272 | OA
The CATP-8/P5A-type ATPase functions in multiple pathways during neuronal patterning
L.T.H. Tang, M. Trivedi, J. Freund, C.J. Salazar, M. Rahman, N. Ramirez, G. Lee, Y. Wang, B.D. Grant, H.E. Bülow, PLOS Genetics 17 (2021).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2021 | Journal Article | IST-REx-ID: 9429 | OA
Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development
J. Morandell, L.A. Schwarz, B. Basilico, S. Tasciyan, G.A. Dimchev, A. Nicolas, C.M. Sommer, C. Kreuzinger, C. Dotter, L. Knaus, Z. Dobler, E. Cacci, F.K. Schur, J.G. Danzl, G. Novarino, Nature Communications 12 (2021).
[Published Version] View | Files available | DOI | WoS
 

2020 | Journal Article | IST-REx-ID: 10348 | OA
An ESCRT-III polymerization sequence drives membrane deformation and fission
A.-K. Pfitzner, V. Mercier, X. Jiang, J. Moser von Filseck, B. Baum, A. Šarić, A. Roux, Cell 182 (2020) 1140–1155.e18.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2020 | Journal Article | IST-REx-ID: 11056 | OA
Transcriptional and functional changes of the human microvasculature during physiological aging and Alzheimer disease
S. Bersini, R. Arrojo e Drigo, L. Huang, M.N. Shokhirev, M. Hetzer, Advanced Biosystems 4 (2020).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2020 | Journal Article | IST-REx-ID: 11055 | OA
Direct reprogramming of human smooth muscle and vascular endothelial cells reveals defects associated with aging and Hutchinson-Gilford progeria syndrome
S. Bersini, R. Schulte, L. Huang, H. Tsai, M. Hetzer, ELife 9 (2020).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2020 | Journal Article | IST-REx-ID: 11058 | OA
Nup93 regulates breast tumor growth by modulating cell proliferation and actin cytoskeleton remodeling
S. Bersini, N.K. Lytle, R. Schulte, L. Huang, G.M. Wahl, M. Hetzer, Life Science Alliance 3 (2020).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2020 | Journal Article | IST-REx-ID: 8402 | OA
The mitochondrial carrier pathway transports non-canonical substrates with an odd number of transmembrane segments
H. Rampelt, I. Sucec, B. Bersch, P. Horten, I. Perschil, J.-C. Martinou, M. van der Laan, N. Wiedemann, P. Schanda, N. Pfanner, BMC Biology 18 (2020).
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2020 | Journal Article | IST-REx-ID: 12189 | OA
AXR1 affects DNA methylation independently of its role in regulating meiotic crossover localization
N. Christophorou, W. She, J. Long, A. Hurel, S. Beaubiat, Y. Idir, M. Tagliaro-Jahns, A. Chambon, V. Solier, D. Vezon, M. Grelon, X. Feng, N. Bouché, C. Mézard, PLOS Genetics 16 (2020).
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2020 | Journal Article | IST-REx-ID: 8529 | OA
Converting microwave and telecom photons with a silicon photonic nanomechanical interface
G.M. Arnold, M. Wulf, S. Barzanjeh, E. Redchenko, A.R. Rueda Sanchez, W.J. Hease, F. Hassani, J.M. Fink, Nature Communications 11 (2020).
[Published Version] View | Files available | DOI | WoS
 

2020 | Journal Article | IST-REx-ID: 8592 | OA
Oncogenic state and cell identity combinatorially dictate the susceptibility of cells within glioma development hierarchy to IGF1R targeting
Tian A, Kang B, Li B, Qiu B, Jiang W, Shao F, Gao Q, Liu R, Cai C, Jing R, Wang W, Chen P, Liang Q, Bao L, Man J, Wang Y, Shi Y, Li J, Yang M, Wang L, Zhang J, Hippenmeyer S, Zhu J, Bian X, Wang Y, Liu C. 2020. Oncogenic state and cell identity combinatorially dictate the susceptibility of cells within glioma development hierarchy to IGF1R targeting. Advanced Science. 7(21), 2001724.
[Published Version] View | Files available | DOI | WoS
 

2020 | Journal Article | IST-REx-ID: 8568 | OA
Persistent and reversible solid iodine electrodeposition in nanoporous carbons
C. Prehal, H. Fitzek, G. Kothleitner, V. Presser, B. Gollas, S.A. Freunberger, Q. Abbas, Nature Communications 11 (2020).
[Published Version] View | Files available | DOI | WoS
 

2020 | Journal Article | IST-REx-ID: 8744 | OA
Cysteine oxidation and disulfide formation in the ribosomal exit tunnel
L. Schulte, J. Mao, J. Reitz, S. Sreeramulu, D. Kudlinzki, V.-V. Hodirnau, J. Meier-Credo, K. Saxena, F. Buhr, J.D. Langer, M. Blackledge, A.S. Frangakis, C. Glaubitz, H. Schwalbe, Nature Communications 11 (2020).
[Published Version] View | Files available | DOI | WoS
 

2020 | Journal Article | IST-REx-ID: 8767 | OA
The Moran process on 2-chromatic graphs
K. Kaveh, A. McAvoy, K. Chatterjee, M.A. Nowak, PLOS Computational Biology 16 (2020).
[Published Version] View | Files available | DOI | WoS
 

2020 | Journal Article | IST-REx-ID: 8971 | OA
Cryo-electron tomography structure of Arp2/3 complex in cells reveals new insights into the branch junction
F. Fäßler, G.A. Dimchev, V.-V. Hodirnau, W. Wan, F.K. Schur, Nature Communications 11 (2020).
[Published Version] View | Files available | DOI | WoS
 

2020 | Journal Article | IST-REx-ID: 14125 | OA
SCIM: Universal single-cell matching with unpaired feature sets
Stark SG et al. 2020. SCIM: Universal single-cell matching with unpaired feature sets. Bioinformatics. 36(Supplement_2), i919–i927.
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2020 | Journal Article | IST-REx-ID: 15037 | OA
TOLs function as ubiquitin receptors in the early steps of the ESCRT pathway in higher plants
J. Moulinier-Anzola, M. Schwihla, L. De-Araújo, C. Artner, L. Jörg, N. Konstantinova, C. Luschnig, B. Korbei, Molecular Plant 13 (2020) 717–731.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2020 | Journal Article | IST-REx-ID: 15036 | OA
Molecular recognition at septin interfaces: The switches hold the key
H.V.D. Rosa, D.A. Leonardo, G. Brognara, J. Brandão-Neto, H. D’Muniz Pereira, A.P.U. Araújo, R.C. Garratt, Journal of Molecular Biology 432 (2020) 5784–5801.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2020 | Journal Article | IST-REx-ID: 15153 | OA
Dynamics at the serine loop underlie differential affinity of cryptochromes for CLOCK:BMAL1 to control circadian timing
J.L. Fribourgh, A. Srivastava, C.R. Sandate, A.K. Michael, P.L. Hsu, C. Rakers, L.T. Nguyen, M.R. Torgrimson, G.C.G. Parico, S. Tripathi, N. Zheng, G.C. Lander, T. Hirota, F. Tama, C.L. Partch, ELife 9 (2020).
[Published Version] View | DOI | Download Published Version (ext.)
 

2019 | Journal Article | IST-REx-ID: 10355 | OA
Minimal coarse-grained models for molecular self-organisation in biology
A.E. Hafner, J. Krausser, A. Šarić, Current Opinion in Structural Biology 58 (2019) 43–52.
[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC
 

2019 | Journal Article | IST-REx-ID: 11062 | OA
Age mosaicism across multiple scales in adult tissues
R. Arrojo e Drigo, V. Lev-Ram, S. Tyagi, R. Ramachandra, T. Deerinck, E. Bushong, S. Phan, V. Orphan, C. Lechene, M.H. Ellisman, M. Hetzer, Cell Metabolism 30 (2019) 343–351.e3.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2019 | Journal Article | IST-REx-ID: 11059
Coaching from the sidelines: The nuclear periphery in genome regulation
A. Buchwalter, J.M. Kaneshiro, M. Hetzer, Nature Reviews Genetics 20 (2019) 39–50.
View | DOI | PubMed | Europe PMC
 

2019 | Journal Article | IST-REx-ID: 8405 | OA
Integrated NMR and cryo-EM atomic-resolution structure determination of a half-megadalton enzyme complex
D.F. Gauto, L.F. Estrozi, C.D. Schwieters, G. Effantin, P. Macek, R. Sounier, A.C. Sivertsen, E. Schmidt, R. Kerfah, G. Mas, J.-P. Colletier, P. Güntert, A. Favier, G. Schoehn, P. Schanda, J. Boisbouvier, Nature Communications 10 (2019).
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2019 | Journal Article | IST-REx-ID: 9060 | OA
Activity-controlled annealing of colloidal monolayers
S. Ramananarivo, E. Ducrot, J.A. Palacci, Nature Communications 10 (2019).
[Published Version] View | Files available | DOI | PubMed | Europe PMC | arXiv
 

2019 | Journal Article | IST-REx-ID: 9018 | OA
Design on a rational basis of high-affinity peptides inhibiting the histone chaperone ASF1
Bakail MM, Gaubert A, Andreani J, Moal G, Pinna G, Boyarchuk E, Gaillard M-C, Courbeyrette R, Mann C, Thuret J-Y, Guichard B, Murciano B, Richet N, Poitou A, Frederic C, Le Du M-H, Agez M, Roelants C, Gurard-Levin ZA, Almouzni G, Cherradi N, Guerois R, Ochsenbein F. 2019. Design on a rational basis of high-affinity peptides inhibiting the histone chaperone ASF1. Cell Chemical Biology. 26(11), 1573–1585.e10.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2019 | Journal Article | IST-REx-ID: 12192 | OA
Natural depletion of histone H1 in sex cells causes DNA demethylation, heterochromatin decondensation and transposon activation
S. He, M. Vickers, J. Zhang, X. Feng, ELife 8 (2019).
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 

2019 | Journal Article | IST-REx-ID: 12190
Natural variation in TBP-ASSOCIATED FACTOR 4b controls meiotic crossover and germline transcription in Arabidopsis
E.J. Lawrence, H. Gao, A.J. Tock, C. Lambing, A.R. Blackwell, X. Feng, I.R. Henderson, Current Biology 29 (2019) 2676–2686.e3.
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2019 | Journal Article | IST-REx-ID: 11060 | OA
Selective clearance of the inner nuclear membrane protein emerin by vesicular transport during ER stress
A. Buchwalter, R. Schulte, H. Tsai, J. Capitanio, M. Hetzer, ELife 8 (2019).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 

2018 | Journal Article | IST-REx-ID: 8440
The antibiotic cyclomarin blocks arginine-phosphate–induced millisecond dynamics in the N-terminal domain of ClpC1 from Mycobacterium tuberculosis
K. Weinhäupl, M. Brennich, U. Kazmaier, J. Lelievre, L. Ballell, A. Goldberg, P. Schanda, H. Fraga, Journal of Biological Chemistry 293 (2018) 8379–8393.
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2018 | Journal Article | IST-REx-ID: 8436
Structural basis of membrane protein chaperoning through the mitochondrial intermembrane space
K. Weinhäupl, C. Lindau, A. Hessel, Y. Wang, C. Schütze, T. Jores, L. Melchionda, B. Schönfisch, H. Kalbacher, B. Bersch, D. Rapaport, M. Brennich, K. Lindorff-Larsen, N. Wiedemann, P. Schanda, Cell 175 (2018) 1365–1379.e25.
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2018 | Journal Article | IST-REx-ID: 8438
Dynamics and interactions of AAC3 in DPC are not functionally relevant
V. Kurauskas, A. Hessel, F. Dehez, C. Chipot, B. Bersch, P. Schanda, Nature Structural & Molecular Biology 25 (2018) 745–747.
View | DOI
 

2018 | Journal Article | IST-REx-ID: 13374 | OA
Reversible chromism of spiropyran in the cavity of a flexible coordination cage
D. Samanta, D. Galaktionova, J. Gemen, L.J.W. Shimon, Y. Diskin-Posner, L. Avram, P. Král, R. Klajn, Nature Communications 9 (2018).
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

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