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3481 Publications
2016 | Journal Article | IST-REx-ID: 1209 |

Purification of ovine respiratory complex i results in a highly active and stable preparation
J.A. Letts, G. Degliesposti, K. Fiedorczuk, M. Skehel, L.A. Sazanov, Journal of Biological Chemistry 291 (2016) 24657–24675.
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J.A. Letts, G. Degliesposti, K. Fiedorczuk, M. Skehel, L.A. Sazanov, Journal of Biological Chemistry 291 (2016) 24657–24675.
2016 | Journal Article | IST-REx-ID: 1212 |

Termination of shoot gravitropic responses by auxin feedback on PIN3 polarity
H. Rakusová, M. Abbas, H. Han, S. Song, H. Robert, J. Friml, Current Biology 26 (2016) 3026–3032.
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H. Rakusová, M. Abbas, H. Han, S. Song, H. Robert, J. Friml, Current Biology 26 (2016) 3026–3032.
2016 | Journal Article | IST-REx-ID: 1216 |

Acceleration feature points of unsteady shear flows
J. Kasten, J. Reininghaus, I. Hotz, H. Hege, B. Noack, G. Daviller, M. Morzyński, Archives of Mechanics 68 (2016) 55–80.
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J. Kasten, J. Reininghaus, I. Hotz, H. Hege, B. Noack, G. Daviller, M. Morzyński, Archives of Mechanics 68 (2016) 55–80.
2016 | Journal Article | IST-REx-ID: 1218 |

Culturing synechocystis sp. Strain pcc 6803 with N2 and CO2 in a diel regime reveals multiphase glycogen dynamics with low maintenance costs
A. Angermayr, P. Van Alphen, D. Hasdemir, G. Kramer, M. Iqbal, W. Van Grondelle, H. Hoefsloot, Y. Choi, K. Hellingwerf, Applied and Environmental Microbiology 82 (2016) 4180–4189.
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A. Angermayr, P. Van Alphen, D. Hasdemir, G. Kramer, M. Iqbal, W. Van Grondelle, H. Hoefsloot, Y. Choi, K. Hellingwerf, Applied and Environmental Microbiology 82 (2016) 4180–4189.
2016 | Journal Article | IST-REx-ID: 1219 |

Bulk universality for deformed wigner matrices
J. Lee, K. Schnelli, B. Stetler, H. Yau, Annals of Probability 44 (2016) 2349–2425.
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J. Lee, K. Schnelli, B. Stetler, H. Yau, Annals of Probability 44 (2016) 2349–2425.
2016 | Conference Paper | IST-REx-ID: 1220 |

Fuselage boundary layer ingestion propulsion applied to a thin haul commuter aircraft for optimal efficiency
G. Mikić, A. Stoll, J. Bevirt, R. Grah, M. Moore, in:, AIAA, 2016, pp. 1–19.
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G. Mikić, A. Stoll, J. Bevirt, R. Grah, M. Moore, in:, AIAA, 2016, pp. 1–19.
2016 | Journal Article | IST-REx-ID: 1221 |

Strong morphological defects in conditional Arabidopsis abp1 knock-down mutants generated in absence of functional ABP1 protein
J. Michalko, M. Glanc, C. Perrot Rechenmann, J. Friml, F1000 Research 5 (2016).
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J. Michalko, M. Glanc, C. Perrot Rechenmann, J. Friml, F1000 Research 5 (2016).
2016 | Journal Article | IST-REx-ID: 1222 |

Optimal packings of congruent circles on a square flat torus
O. Musin, A. Nikitenko, Discrete & Computational Geometry 55 (2016) 1–20.
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O. Musin, A. Nikitenko, Discrete & Computational Geometry 55 (2016) 1–20.
2016 | Journal Article | IST-REx-ID: 1223 |

Localization for transversally periodic random potentials on binary trees
R. Froese, D. Lee, C. Sadel, W. Spitzer, G. Stolz, Journal of Spectral Theory 6 (2016) 557–600.
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R. Froese, D. Lee, C. Sadel, W. Spitzer, G. Stolz, Journal of Spectral Theory 6 (2016) 557–600.
2016 | Journal Article | IST-REx-ID: 1226 |

Atomic structure of the entire mammalian mitochondrial complex i
K. Fiedorczuk, J.A. Letts, G. Degliesposti, K. Kaszuba, M. Skehel, L.A. Sazanov, Nature 538 (2016) 406–410.
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| PubMed | Europe PMC
K. Fiedorczuk, J.A. Letts, G. Degliesposti, K. Kaszuba, M. Skehel, L.A. Sazanov, Nature 538 (2016) 406–410.
2016 | Conference Paper | IST-REx-ID: 1227 |

Discrete abstraction of multiaffine systems
H. Kong, E. Bartocci, S. Bogomolov, R. Grosu, T.A. Henzinger, Y. Jiang, C. Schilling, in:, Springer, 2016, pp. 128–144.
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H. Kong, E. Bartocci, S. Bogomolov, R. Grosu, T.A. Henzinger, Y. Jiang, C. Schilling, in:, Springer, 2016, pp. 128–144.
2016 | Conference Paper | IST-REx-ID: 1230 |

Abstraction-driven concolic testing
P. Daca, A. Gupta, T.A. Henzinger, in:, Springer, 2016, pp. 328–347.
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P. Daca, A. Gupta, T.A. Henzinger, in:, Springer, 2016, pp. 328–347.
2016 | Conference Paper | IST-REx-ID: 1231 |

On the complexity of scrypt and proofs of space in the parallel random oracle model
J.F. Alwen, B. Chen, C. Kamath Hosdurg, V. Kolmogorov, K.Z. Pietrzak, S. Tessaro, in:, Springer, 2016, pp. 358–387.
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J.F. Alwen, B. Chen, C. Kamath Hosdurg, V. Kolmogorov, K.Z. Pietrzak, S. Tessaro, in:, Springer, 2016, pp. 358–387.
2016 | Conference Paper | IST-REx-ID: 1233 |

Standard security does imply security against selective opening for markov distributions
G. Fuchsbauer, F. Heuer, E. Kiltz, K.Z. Pietrzak, in:, Springer, 2016, pp. 282–305.
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G. Fuchsbauer, F. Heuer, E. Kiltz, K.Z. Pietrzak, in:, Springer, 2016, pp. 282–305.
2016 | Journal Article | IST-REx-ID: 1238 |

Endosomal interactions during root hair growth
D. von Wangenheim, A. Rosero, G. Komis, O. Šamajová, M. Ovečka, B. Voigt, J. Šamaj, Frontiers in Plant Science 6 (2016).
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D. von Wangenheim, A. Rosero, G. Komis, O. Šamajová, M. Ovečka, B. Voigt, J. Šamaj, Frontiers in Plant Science 6 (2016).
2016 | Journal Article | IST-REx-ID: 1240 |

Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans
A. Kornienko, C. Dotter, P. Guenzl, H. Gisslinger, B. Gisslinger, C. Cleary, R. Kralovics, F. Pauler, D. Barlow, Genome Biology 17 (2016).
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A. Kornienko, C. Dotter, P. Guenzl, H. Gisslinger, B. Gisslinger, C. Cleary, R. Kralovics, F. Pauler, D. Barlow, Genome Biology 17 (2016).
2016 | Journal Article | IST-REx-ID: 1242 |

Extending the dynamic range of transcription factor action by translational regulation
T.R. Sokolowski, A. Walczak, W. Bialek, G. Tkačik, Physical Review E Statistical Nonlinear and Soft Matter Physics 93 (2016).
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T.R. Sokolowski, A. Walczak, W. Bialek, G. Tkačik, Physical Review E Statistical Nonlinear and Soft Matter Physics 93 (2016).
2016 | Journal Article | IST-REx-ID: 1241 |

The role of recombination in evolutionary rescue
H. Uecker, J. Hermisson, Genetics 202 (2016) 721–732.
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H. Uecker, J. Hermisson, Genetics 202 (2016) 721–732.
2016 | Journal Article | IST-REx-ID: 1247 |

ROTUNDA3 function in plant development by phosphatase 2A-mediated regulation of auxin transporter recycling
M. Karampelias, P. Neyt, S. De Groeve, S. Aesaert, G. Coussens, J. Rolčík, L. Bruno, N. De Winne, A. Van Minnebruggen, M. Van Montagu, M. Ponce, J. Micol, J. Friml, G. De Jaeger, M. Van Lijsebettens, PNAS 113 (2016) 2768–2773.
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M. Karampelias, P. Neyt, S. De Groeve, S. Aesaert, G. Coussens, J. Rolčík, L. Bruno, N. De Winne, A. Van Minnebruggen, M. Van Montagu, M. Ponce, J. Micol, J. Friml, G. De Jaeger, M. Van Lijsebettens, PNAS 113 (2016) 2768–2773.
2016 | Journal Article | IST-REx-ID: 1246 |

Imaging of electric and magnetic fields near plasmonic nanowires
I. Kabakova, A. De Hoogh, R. Van Der Wel, M. Wulf, B. Le Feber, L. Kuipers, Scientific Reports 6 (2016).
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I. Kabakova, A. De Hoogh, R. Van Der Wel, M. Wulf, B. Le Feber, L. Kuipers, Scientific Reports 6 (2016).
2016 | Journal Article | IST-REx-ID: 1244 |

Chimera proteins with affinity for membranes and microtubule tips polarize in the membrane of fission yeast cells
P. Recouvreux, T.R. Sokolowski, A. Grammoustianou, P. Tenwolde, M. Dogterom, PNAS 113 (2016) 1811–1816.
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P. Recouvreux, T.R. Sokolowski, A. Grammoustianou, P. Tenwolde, M. Dogterom, PNAS 113 (2016) 1811–1816.
2016 | Journal Article | IST-REx-ID: 1248 |

Information processing in living systems
G. Tkačik, W. Bialek, Annual Review of Condensed Matter Physics 7 (2016) 89–117.
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G. Tkačik, W. Bialek, Annual Review of Condensed Matter Physics 7 (2016) 89–117.
2016 | Journal Article | IST-REx-ID: 1249 |

Determining physical properties of the cell cortex
A. Saha, M. Nishikawa, M. Behrndt, C.-P.J. Heisenberg, F. Julicher, S. Grill, Biophysical Journal 110 (2016) 1421–1429.
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A. Saha, M. Nishikawa, M. Behrndt, C.-P.J. Heisenberg, F. Julicher, S. Grill, Biophysical Journal 110 (2016) 1421–1429.
2016 | Journal Article | IST-REx-ID: 1251 |

TWISTED DWARF1 mediates the action of auxin transport inhibitors on actin cytoskeleton dynamics
Zhu J, Bailly A, Zwiewka M, Sovero V, Di Donato M, Ge P, Oehri J, Aryal B, Hao P, Linnert M, Burgardt N, Lücke C, Weiwad M, Michel M, Weiergräber O, Pollmann S, Azzarello E, Mancuso S, Ferro N, Fukao Y, Hoffmann C, Wedlich Söldner R, Friml J, Thomas C, Geisler M. 2016. TWISTED DWARF1 mediates the action of auxin transport inhibitors on actin cytoskeleton dynamics. Plant Cell. 28(4), 930–948.
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Zhu J, Bailly A, Zwiewka M, Sovero V, Di Donato M, Ge P, Oehri J, Aryal B, Hao P, Linnert M, Burgardt N, Lücke C, Weiwad M, Michel M, Weiergräber O, Pollmann S, Azzarello E, Mancuso S, Ferro N, Fukao Y, Hoffmann C, Wedlich Söldner R, Friml J, Thomas C, Geisler M. 2016. TWISTED DWARF1 mediates the action of auxin transport inhibitors on actin cytoskeleton dynamics. Plant Cell. 28(4), 930–948.
2016 | Journal Article | IST-REx-ID: 1252 |

Inducing a map on homology from a correspondence
S. Harker, H. Kokubu, K. Mischaikow, P. Pilarczyk, Proceedings of the American Mathematical Society 144 (2016) 1787–1801.
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| arXiv
S. Harker, H. Kokubu, K. Mischaikow, P. Pilarczyk, Proceedings of the American Mathematical Society 144 (2016) 1787–1801.
2016 | Journal Article | IST-REx-ID: 1253 |

How MicroRNAs Are involved in splitting the mind
L. Tsai, S. Siegert, JAMA Psychiatry 73 (2016) 409–410.
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L. Tsai, S. Siegert, JAMA Psychiatry 73 (2016) 409–410.
2016 | Journal Article | IST-REx-ID: 1254 |

Uniform expansivity outside a critical neighborhood in the quadratic family
A. Golmakani, S. Luzzatto, P. Pilarczyk, Experimental Mathematics 25 (2016) 116–124.
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A. Golmakani, S. Luzzatto, P. Pilarczyk, Experimental Mathematics 25 (2016) 116–124.
2016 | Journal Article | IST-REx-ID: 1255 |

Down syndrome cell adhesion molecule 1: Testing for a role in insect immunity, behaviour and reproduction
R. Peuß, K. Wensing, L. Woestmann, H. Eggert, B. Milutinovic, M. Sroka, J. Scharsack, J. Kurtz, S. Armitage, Royal Society Open Science 3 (2016).
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R. Peuß, K. Wensing, L. Woestmann, H. Eggert, B. Milutinovic, M. Sroka, J. Scharsack, J. Kurtz, S. Armitage, Royal Society Open Science 3 (2016).
2016 | Conference Paper | IST-REx-ID: 1256 |

From stateflow simulation to verified implementation: A verification approach and a real-time train controller design
Y. Jiang, Y. Yang, H. Liu, H. Kong, M. Gu, J. Sun, L. Sha, in:, IEEE, 2016.
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Y. Jiang, Y. Yang, H. Liu, H. Kong, M. Gu, J. Sun, L. Sha, in:, IEEE, 2016.
2016 | Journal Article | IST-REx-ID: 1257 |

A central limit theorem for products of random matrices and GOE statistics for the Anderson model on long boxes
C. Sadel, B. Virág, Communications in Mathematical Physics 343 (2016) 881–919.
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C. Sadel, B. Virág, Communications in Mathematical Physics 343 (2016) 881–919.
2016 | Journal Article | IST-REx-ID: 1259 |

Bogolubov–Hartree–Fock theory for strongly interacting fermions in the low density limit
G. Bräunlich, C. Hainzl, R. Seiringer, Mathematical Physics, Analysis and Geometry 19 (2016).
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G. Bräunlich, C. Hainzl, R. Seiringer, Mathematical Physics, Analysis and Geometry 19 (2016).
2016 | Journal Article | IST-REx-ID: 1260 |

The dual of the space of interactions in neural network models
D. De Martino, International Journal of Modern Physics C 27 (2016).
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| arXiv
D. De Martino, International Journal of Modern Physics C 27 (2016).
2016 | Journal Article | IST-REx-ID: 1261 |

Long-time behavior of a finite volume discretization for a fourth order diffusion equation
J. Maas, D. Matthes, Nonlinearity 29 (2016) 1992–2023.
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J. Maas, D. Matthes, Nonlinearity 29 (2016) 1992–2023.
2016 | Journal Article | IST-REx-ID: 1263 |

Efficient microwave to optical photon conversion: An electro-optical realization
A. Rueda, F. Sedlmeir, M. Collodo, U. Vogl, B. Stiller, G. Schunk, D. Strekalov, C. Marquardt, J.M. Fink, O. Painter, G. Leuchs, H. Schwefel, Optica 3 (2016) 597–604.
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A. Rueda, F. Sedlmeir, M. Collodo, U. Vogl, B. Stiller, G. Schunk, D. Strekalov, C. Marquardt, J.M. Fink, O. Painter, G. Leuchs, H. Schwefel, Optica 3 (2016) 597–604.
2016 | Journal Article | IST-REx-ID: 1264 |

Sorting motifs involved in the trafficking and localization of the PIN1 auxin efflux carrier
G. Sancho Andrés, E. Soriano Ortega, C. Gao, J. Bernabé Orts, M. Narasimhan, A. Müller, R. Tejos, L. Jiang, J. Friml, F. Aniento, M. Marcote, Plant Physiology 171 (2016) 1965–1982.
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G. Sancho Andrés, E. Soriano Ortega, C. Gao, J. Bernabé Orts, M. Narasimhan, A. Müller, R. Tejos, L. Jiang, J. Friml, F. Aniento, M. Marcote, Plant Physiology 171 (2016) 1965–1982.
2016 | Journal Article | IST-REx-ID: 1266 |

Neural oscillations as a signature of efficient coding in the presence of synaptic delays
M.J. Chalk, B. Gutkin, S. Denève, ELife 5 (2016).
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M.J. Chalk, B. Gutkin, S. Denève, ELife 5 (2016).
2016 | Journal Article | IST-REx-ID: 1269 |

Plant hormones in interactions with the environment
E. Benková, Plant Molecular Biology 91 (2016) 597.
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| DOI
E. Benková, Plant Molecular Biology 91 (2016) 597.
2016 | Journal Article | IST-REx-ID: 1267 |

Nonexistence of large nuclei in the liquid drop model
R. Frank, R. Killip, P. Nam, Letters in Mathematical Physics 106 (2016) 1033–1036.
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R. Frank, R. Killip, P. Nam, Letters in Mathematical Physics 106 (2016) 1033–1036.
2016 | Journal Article | IST-REx-ID: 1271 |

Steering cell migration by alternating blebs and actin-rich protrusions
A. Diz Muñoz, P. Romanczuk, W. Yu, M. Bergert, K. Ivanovitch, G. Salbreux, C.-P.J. Heisenberg, E. Paluch, BMC Biology 14 (2016).
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A. Diz Muñoz, P. Romanczuk, W. Yu, M. Bergert, K. Ivanovitch, G. Salbreux, C.-P.J. Heisenberg, E. Paluch, BMC Biology 14 (2016).
2016 | Journal Article | IST-REx-ID: 1273 |

Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3
S. Porco, A. Larrieu, Y. Du, A. Gaudinier, T. Goh, K. Swarup, R. Swarup, B. Kuempers, A. Bishopp, J. Lavenus, I. Casimiro, K. Hill, E. Benková, H. Fukaki, S. Brady, B. Scheres, B. Peéet, M. Bennett, Development 143 (2016) 3340–3349.
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S. Porco, A. Larrieu, Y. Du, A. Gaudinier, T. Goh, K. Swarup, R. Swarup, B. Kuempers, A. Bishopp, J. Lavenus, I. Casimiro, K. Hill, E. Benková, H. Fukaki, S. Brady, B. Scheres, B. Peéet, M. Bennett, Development 143 (2016) 3340–3349.
2016 | Journal Article | IST-REx-ID: 1272 |

Generalized offsetting of planar structures using skeletons
M. Held, S. Huber, P. Palfrader, Computer-Aided Design and Applications 13 (2016) 712–721.
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M. Held, S. Huber, P. Palfrader, Computer-Aided Design and Applications 13 (2016) 712–721.
2016 | Journal Article | IST-REx-ID: 1279 |

Optogenetically blocking sharp wave ripple events in sleep does not interfere with the formation of stable spatial representation in the CA1 area of the hippocampus
K. Kovács, J. O’Neill, P. Schönenberger, M. Penttonen, D.K. Rangel Guerrero, J.L. Csicsvari, PLoS One 11 (2016).
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K. Kovács, J. O’Neill, P. Schönenberger, M. Penttonen, D.K. Rangel Guerrero, J.L. Csicsvari, PLoS One 11 (2016).
2016 | Journal Article | IST-REx-ID: 1278 |

Distribution and structure of synapses on medial vestibular nuclear neurons targeted by cerebellar flocculus purkinje cells and vestibular nerve in mice: Light and electron microscopy studies
H. Matsuno, M. Kudoh, A. Watakabe, T. Yamamori, R. Shigemoto, S. Nagao, PLoS One 11 (2016).
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H. Matsuno, M. Kudoh, A. Watakabe, T. Yamamori, R. Shigemoto, S. Nagao, PLoS One 11 (2016).
2016 | Journal Article | IST-REx-ID: 1276 |

Atomistic determinants of co-enzyme Q reduction at the Qi-site of the cytochrome bc1 complex
P. Postila, K. Kaszuba, P. Kuleta, I. Vattulainen, M. Sarewicz, A. Osyczka, T. Róg, Scientific Reports 6 (2016).
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P. Postila, K. Kaszuba, P. Kuleta, I. Vattulainen, M. Sarewicz, A. Osyczka, T. Róg, Scientific Reports 6 (2016).
2016 | Journal Article | IST-REx-ID: 1277 |

Danger-associated peptide signaling in Arabidopsis requires clathrin
F. Ortiz Morea, D. Savatin, W. Dejonghe, R. Kumar, Y. Luo, M. Adamowski, J. Van Begin, K. Dressano, G. De Oliveira, X. Zhao, Q. Lu, A. Madder, J. Friml, D. De Moura, E. Russinova, PNAS 113 (2016) 11028–11033.
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F. Ortiz Morea, D. Savatin, W. Dejonghe, R. Kumar, Y. Luo, M. Adamowski, J. Van Begin, K. Dressano, G. De Oliveira, X. Zhao, Q. Lu, A. Madder, J. Friml, D. De Moura, E. Russinova, PNAS 113 (2016) 11028–11033.
2016 | Journal Article | IST-REx-ID: 1281 |

Nitrate controls root development through posttranscriptional regulation of the NRT1.1/NPF6.3 transporter sensor
E. Bouguyon, F. Perrine Walker, M. Pervent, J. Rochette, C. Cuesta, E. Benková, A. Martinière, L. Bach, G. Krouk, A. Gojon, P. Nacry, Plant Physiology 172 (2016) 1237–1248.
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E. Bouguyon, F. Perrine Walker, M. Pervent, J. Rochette, C. Cuesta, E. Benková, A. Martinière, L. Bach, G. Krouk, A. Gojon, P. Nacry, Plant Physiology 172 (2016) 1237–1248.
2016 | Journal Article | IST-REx-ID: 1282 |

On eigenvalues of random complexes
A. Gundert, U. Wagner, Israel Journal of Mathematics 216 (2016) 545–582.
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A. Gundert, U. Wagner, Israel Journal of Mathematics 216 (2016) 545–582.
2016 | Journal Article | IST-REx-ID: 1280 |

Fixed energy universality for generalized wigner matrices
P. Bourgade, L. Erdös, H. Yau, J. Yin, Communications on Pure and Applied Mathematics 69 (2016) 1815–1881.
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P. Bourgade, L. Erdös, H. Yau, J. Yin, Communications on Pure and Applied Mathematics 69 (2016) 1815–1881.
2016 | Journal Article | IST-REx-ID: 1286 |

Rotation of cold molecular ions inside a Bose-Einstein condensate
B. Midya, M. Tomza, R. Schmidt, M. Lemeshko, Physical Review A - Atomic, Molecular, and Optical Physics 94 (2016).
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B. Midya, M. Tomza, R. Schmidt, M. Lemeshko, Physical Review A - Atomic, Molecular, and Optical Physics 94 (2016).
2016 | Journal Article | IST-REx-ID: 1287 |

Modes and exceptional points in waveguides with impedance boundary conditions
B. Midya, V. Konotop, Optics Letters 41 (2016) 4621–4624.
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B. Midya, V. Konotop, Optics Letters 41 (2016) 4621–4624.
2016 | Journal Article | IST-REx-ID: 1291 |

Periodic striped ground states in Ising models with competing interactions
A. Giuliani, R. Seiringer, Communications in Mathematical Physics 347 (2016) 983–1007.
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A. Giuliani, R. Seiringer, Communications in Mathematical Physics 347 (2016) 983–1007.
2016 | Journal Article | IST-REx-ID: 1293 |

Extremal positive semidefinite matrices whose sparsity pattern is given by graphs without K5 minors
L.T. Solus, C. Uhler, R. Yoshida, Linear Algebra and Its Applications 509 (2016) 247–275.
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L.T. Solus, C. Uhler, R. Yoshida, Linear Algebra and Its Applications 509 (2016) 247–275.
2016 | Journal Article | IST-REx-ID: 1290 |

Compounds that select against the tetracycline-resistance efflux pump
L. Stone, M. Baym, T. Lieberman, R.P. Chait, J. Clardy, R. Kishony, Nature Chemical Biology 12 (2016) 902–904.
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L. Stone, M. Baym, T. Lieberman, R.P. Chait, J. Clardy, R. Kishony, Nature Chemical Biology 12 (2016) 902–904.
2016 | Journal Article | IST-REx-ID: 1292 |

Computing the Thurston–Bennequin invariant in open books
S. Durst, M. Kegel, M.D. Klukas, Acta Mathematica Hungarica 150 (2016) 441–455.
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S. Durst, M. Kegel, M.D. Klukas, Acta Mathematica Hungarica 150 (2016) 441–455.
2016 | Journal Article | IST-REx-ID: 1323 |

Plasticity-dependent, full detonation at hippocampal mossy fiber–CA3 pyramidal neuron synapses
N. Vyleta, C. Borges Merjane, P.M. Jonas, ELife 5 (2016).
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N. Vyleta, C. Borges Merjane, P.M. Jonas, ELife 5 (2016).
2016 | Conference Paper | IST-REx-ID: 1325 |

Stability in graphs and games
T. Brázdil, V. Forejt, A. Kučera, P. Novotný, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2016.
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T. Brázdil, V. Forejt, A. Kučera, P. Novotný, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2016.
2016 | Journal Article | IST-REx-ID: 1329 |

De novo transcriptome assembly and sex-biased gene expression in the cyclical parthenogenetic Daphnia galeata
A.K. Huylmans, A. López Ezquerra, J. Parsch, M. Cordellier, Genome Biology and Evolution 8 (2016) 3120–3139.
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A.K. Huylmans, A. López Ezquerra, J. Parsch, M. Cordellier, Genome Biology and Evolution 8 (2016) 3120–3139.
2016 | Conference Paper | IST-REx-ID: 1327 |

Stochastic shortest path with energy constraints in POMDPs
T. Brázdil, K. Chatterjee, M. Chmelik, A. Gupta, P. Novotný, in:, Proceedings of the 15th International Conference on Autonomous Agents and Multiagent Systems, ACM, 2016, pp. 1465–1466.
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T. Brázdil, K. Chatterjee, M. Chmelik, A. Gupta, P. Novotný, in:, Proceedings of the 15th International Conference on Autonomous Agents and Multiagent Systems, ACM, 2016, pp. 1465–1466.
2016 | Conference Paper | IST-REx-ID: 1326 |

Optimizing the expected mean payoff in Energy Markov Decision Processes
T. Brázdil, A. Kučera, P. Novotný, in:, Springer, 2016, pp. 32–49.
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T. Brázdil, A. Kučera, P. Novotný, in:, Springer, 2016, pp. 32–49.
2016 | Journal Article | IST-REx-ID: 1330 |

Billiards in convex bodies with acute angles
A. Akopyan, A. Balitskiy, Israel Journal of Mathematics 216 (2016) 833–845.
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A. Akopyan, A. Balitskiy, Israel Journal of Mathematics 216 (2016) 833–845.
2016 | Journal Article | IST-REx-ID: 1334 |

Activity dependent plasticity of hippocampal place maps
P. Schönenberger, J. O’Neill, J.L. Csicsvari, Nature Communications 7 (2016).
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P. Schönenberger, J. O’Neill, J.L. Csicsvari, Nature Communications 7 (2016).
2016 | Journal Article | IST-REx-ID: 1331 |

Cytokinin response factor 6 represses cytokinin-associated genes during oxidative stress
P. Zwack, I. De Clercq, T. Howton, H.T. Hallmark, A. Hurny, E. Keshishian, A. Parish, E. Benková, M.S. Mukhtar, F. Van Breusegem, A. Rashotte, Plant Physiology 172 (2016) 1249–1258.
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P. Zwack, I. De Clercq, T. Howton, H.T. Hallmark, A. Hurny, E. Keshishian, A. Parish, E. Benková, M.S. Mukhtar, F. Van Breusegem, A. Rashotte, Plant Physiology 172 (2016) 1249–1258.
2016 | Journal Article | IST-REx-ID: 1333 |

Humans choose representatives who enforce cooperation in social dilemmas through extortion
M. Milinski, C. Hilbe, D. Semmann, R. Sommerfeld, J. Marotzke, Nature Communications 7 (2016).
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M. Milinski, C. Hilbe, D. Semmann, R. Sommerfeld, J. Marotzke, Nature Communications 7 (2016).
2016 | Journal Article | IST-REx-ID: 1332 |

Pervasive selection for and against antibiotic resistance in inhomogeneous multistress environments
R.P. Chait, A. Palmer, I. Yelin, R. Kishony, Nature Communications 7 (2016).
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R.P. Chait, A. Palmer, I. Yelin, R. Kishony, Nature Communications 7 (2016).
2016 | Conference Paper | IST-REx-ID: 1335 |

Quantitative monitor automata
K. Chatterjee, T.A. Henzinger, J. Otop, in:, Springer, 2016, pp. 23–38.
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K. Chatterjee, T.A. Henzinger, J. Otop, in:, Springer, 2016, pp. 23–38.
2016 | Journal Article | IST-REx-ID: 1344 |

TIR1 AFB Aux IAA auxin perception mediates rapid cell wall acidification and growth of Arabidopsis hypocotyls
M. Fendrych, J. Leung, J. Friml, ELife 5 (2016).
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M. Fendrych, J. Leung, J. Friml, ELife 5 (2016).
2016 | Journal Article | IST-REx-ID: 1343 |

Dissipative preparation of antiferromagnetic order in the Fermi-Hubbard model
J. Kaczmarczyk, H. Weimer, M. Lemeshko, New Journal of Physics 18 (2016).
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J. Kaczmarczyk, H. Weimer, M. Lemeshko, New Journal of Physics 18 (2016).
2016 | Conference Paper | IST-REx-ID: 1340 |

The big match in small space
K. Hansen, R. Ibsen-Jensen, M. Koucký, in:, Springer, 2016, pp. 64–76.
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K. Hansen, R. Ibsen-Jensen, M. Koucký, in:, Springer, 2016, pp. 64–76.
2016 | Journal Article | IST-REx-ID: 1345 |

Plasma membrane: Negative attraction
G. Molnar, M. Fendrych, J. Friml, Nature Plants 2 (2016).
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G. Molnar, M. Fendrych, J. Friml, Nature Plants 2 (2016).
2016 | Journal Article | IST-REx-ID: 1342 |

Spatiotemporal microbial evolution on antibiotic landscapes
M. Baym, T. Lieberman, E. Kelsic, R.P. Chait, R. Gross, I. Yelin, R. Kishony, Science 353 (2016) 1147–1151.
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M. Baym, T. Lieberman, E. Kelsic, R.P. Chait, R. Gross, I. Yelin, R. Kishony, Science 353 (2016) 1147–1151.
2016 | Journal Article | IST-REx-ID: 1339 |

Tunable mechanical coupling between driven microelectromechanical resonators
G. Verbiest, D. Xu, M. Goldsche, T. Khodkov, S. Barzanjeh, N. Von Den Driesch, D. Buca, C. Stampfer, Applied Physics Letter 109 (2016).
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G. Verbiest, D. Xu, M. Goldsche, T. Khodkov, S. Barzanjeh, N. Von Den Driesch, D. Buca, C. Stampfer, Applied Physics Letter 109 (2016).
2016 | Conference Paper | IST-REx-ID: 1349 |

When non-elitism outperforms elitism for crossing fitness valleys
P. Oliveto, T. Paixao, J. Heredia, D. Sudholt, B. Trubenova, in:, Proceedings of the Genetic and Evolutionary Computation Conference 2016 , ACM, 2016, pp. 1163–1170.
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P. Oliveto, T. Paixao, J. Heredia, D. Sudholt, B. Trubenova, in:, Proceedings of the Genetic and Evolutionary Computation Conference 2016 , ACM, 2016, pp. 1163–1170.
2016 | Journal Article | IST-REx-ID: 1350 |

Synaptic mechanisms of pattern completion in the hippocampal CA3 network
J. Guzmán, A. Schlögl, M. Frotscher, P.M. Jonas, Science 353 (2016) 1117–1123.
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J. Guzmán, A. Schlögl, M. Frotscher, P.M. Jonas, Science 353 (2016) 1117–1123.
2016 | Journal Article | IST-REx-ID: 1347 |

Deformation of a quantum many-particle system by a rotating impurity
R. Schmidt, M. Lemeshko, Physical Review X 6 (2016).
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R. Schmidt, M. Lemeshko, Physical Review X 6 (2016).
2016 | Conference Paper | IST-REx-ID: 1348 |

Bounded embeddings of graphs in the plane
R. Fulek, in:, Springer, 2016, pp. 31–42.
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R. Fulek, in:, Springer, 2016, pp. 31–42.
2016 | Journal Article | IST-REx-ID: 1355 |

Quantum electromechanics on silicon nitride nanomembranes
J.M. Fink, M. Kalaee, A. Pitanti, R. Norte, L. Heinzle, M. Davanço, K. Srinivasan, O. Painter, Nature Communications 7 (2016).
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J.M. Fink, M. Kalaee, A. Pitanti, R. Norte, L. Heinzle, M. Davanço, K. Srinivasan, O. Painter, Nature Communications 7 (2016).
2016 | Journal Article | IST-REx-ID: 1359 |

The effect of gene interactions on the long-term response to selection
T. Paixao, N.H. Barton, PNAS 113 (2016) 4422–4427.
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T. Paixao, N.H. Barton, PNAS 113 (2016) 4422–4427.
2016 | Journal Article | IST-REx-ID: 1352 |

Coexistence of nematic order and superconductivity in the Hubbard model
J. Kaczmarczyk, T. Schickling, J. Bünemann, Physical Review B - Condensed Matter and Materials Physics 94 (2016).
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J. Kaczmarczyk, T. Schickling, J. Bünemann, Physical Review B - Condensed Matter and Materials Physics 94 (2016).
2016 | Journal Article | IST-REx-ID: 1354 |

Superconducting cavity electromechanics on a silicon-on-insulator platform
P. Dieterle, M. Kalaee, J.M. Fink, O. Painter, Physical Review Applied 6 (2016).
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P. Dieterle, M. Kalaee, J.M. Fink, O. Painter, Physical Review Applied 6 (2016).
2016 | Journal Article | IST-REx-ID: 1356 |

Sewall Wright on evolution in Mendelian populations and the “Shifting Balance”
N.H. Barton, Genetics 202 (2016) 3–4.
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N.H. Barton, Genetics 202 (2016) 3–4.
2016 | Journal Article | IST-REx-ID: 1357 |

Richard Hudson and Norman Kaplan on the coalescent process
N.H. Barton, Genetics 202 (2016) 865–866.
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N.H. Barton, Genetics 202 (2016) 865–866.
2016 | Journal Article | IST-REx-ID: 1353 |

Deciding absorption
L. Barto, A. Kazda, International Journal of Algebra and Computation 26 (2016) 1033–1060.
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L. Barto, A. Kazda, International Journal of Algebra and Computation 26 (2016) 1033–1060.
2016 | Conference Paper | IST-REx-ID: 1363 |

Generalized non-reflecting boundaries for fluid re-simulation
M. Bojsen-Hansen, C. Wojtan, in:, ACM, 2016.
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M. Bojsen-Hansen, C. Wojtan, in:, ACM, 2016.
2016 | Conference Paper | IST-REx-ID: 1364 |

Computational design of stable planar-rod structures
E. Miguel Villalba, M. Lepoutre, B. Bickel, in:, ACM, 2016.
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E. Miguel Villalba, M. Lepoutre, B. Bickel, in:, ACM, 2016.
2016 | Conference Paper | IST-REx-ID: 1361 |

Surface only liquids
F. Da, D. Hahn, C. Batty, C. Wojtan, E. Grinspun, in:, ACM, 2016.
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F. Da, D. Hahn, C. Batty, C. Wojtan, E. Grinspun, in:, ACM, 2016.
2016 | Conference Paper | IST-REx-ID: 1365 |

Efficiently computing data-independent memory-hard functions
J.F. Alwen, J. Blocki, in:, Springer, 2016, pp. 241–271.
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J.F. Alwen, J. Blocki, in:, Springer, 2016, pp. 241–271.
2016 | Conference Paper | IST-REx-ID: 1366 |

Provably robust sponge-based PRNGs and KDFs
P. Gazi, S. Tessaro, in:, Springer, 2016, pp. 87–116.
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P. Gazi, S. Tessaro, in:, Springer, 2016, pp. 87–116.
2016 | Journal Article | IST-REx-ID: 1360 |

Elementary approach to closed billiard trajectories in asymmetric normed spaces
A. Akopyan, A. Balitskiy, R. Karasev, A. Sharipova, Proceedings of the American Mathematical Society 144 (2016) 4501–4513.
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A. Akopyan, A. Balitskiy, R. Karasev, A. Sharipova, Proceedings of the American Mathematical Society 144 (2016) 4501–4513.
2016 | Journal Article | IST-REx-ID: 1372 |

Cytokinins influence root gravitropism via differential regulation of auxin transporter expression and localization in Arabidopsis
M. Pernisová, T. Prat, P. Grones, D. Haruštiaková, M. Matonohova, L. Spíchal, T. Nodzyński, J. Friml, J. Hejátko, New Phytologist 212 (2016) 497–509.
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M. Pernisová, T. Prat, P. Grones, D. Haruštiaková, M. Matonohova, L. Spíchal, T. Nodzyński, J. Friml, J. Hejátko, New Phytologist 212 (2016) 497–509.
2016 | Conference Paper | IST-REx-ID: 1369 |

Seed, expand and constrain: Three principles for weakly-supervised image segmentation
A. Kolesnikov, C. Lampert, in:, Springer, 2016, pp. 695–711.
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A. Kolesnikov, C. Lampert, in:, Springer, 2016, pp. 695–711.
2016 | Journal Article | IST-REx-ID: 1368 |

Correlation driven d wave superconductivity in Anderson lattice model: Two gaps
M. Wysokiński, J. Kaczmarczyk, J. Spałek, Physical Review B - Condensed Matter and Materials Physics 94 (2016).
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M. Wysokiński, J. Kaczmarczyk, J. Spałek, Physical Review B - Condensed Matter and Materials Physics 94 (2016).
2016 | Journal Article | IST-REx-ID: 1370 |

Phonon Josephson junction with nanomechanical resonators
S. Barzanjeh, D. Vitali, Physical Review A - Atomic, Molecular, and Optical Physics 93 (2016).
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S. Barzanjeh, D. Vitali, Physical Review A - Atomic, Molecular, and Optical Physics 93 (2016).
2016 | Journal Article | IST-REx-ID: 1373 |

Network architectures and operating principles. Reply to comments on "Drivers of structural features in gene regulatory networks: From biophysical constraints to biological function"
O. Martin, M.P. Zagórski, Physics of Life Reviews 17 (2016) 168–171.
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O. Martin, M.P. Zagórski, Physics of Life Reviews 17 (2016) 168–171.
2016 | Journal Article | IST-REx-ID: 1377 |

Total variation on a tree
V. Kolmogorov, T. Pock, M. Rolinek, SIAM Journal on Imaging Sciences 9 (2016) 605–636.
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V. Kolmogorov, T. Pock, M. Rolinek, SIAM Journal on Imaging Sciences 9 (2016) 605–636.
2016 | Conference Paper | IST-REx-ID: 1381 |

Eliminating higher-multiplicity intersections, II. The deleted product criterion in the r-metastable range
I. Mabillard, U. Wagner, in:, Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, 2016, p. 51.1-51.12.
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I. Mabillard, U. Wagner, in:, Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, 2016, p. 51.1-51.12.
2016 | Journal Article | IST-REx-ID: 1380 |

On the complexity of the orbit problem
V.K. Chonev, J. Ouaknine, J. Worrell, Journal of the ACM 63 (2016).
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V.K. Chonev, J. Ouaknine, J. Worrell, Journal of the ACM 63 (2016).
2016 | Conference Paper | IST-REx-ID: 1391 |

Array folds logic
P. Daca, T.A. Henzinger, A. Kupriyanov, in:, Springer, 2016, pp. 230–248.
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P. Daca, T.A. Henzinger, A. Kupriyanov, in:, Springer, 2016, pp. 230–248.
2016 | Conference Paper | IST-REx-ID: 1389 |

On recurrent reachability for continuous linear dynamical systems
V.K. Chonev, J. Ouaknine, J. Worrell, in:, LICS ’16, IEEE, 2016, pp. 515–524.
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V.K. Chonev, J. Ouaknine, J. Worrell, in:, LICS ’16, IEEE, 2016, pp. 515–524.
2016 | Journal Article | IST-REx-ID: 1394 |

Growth against entropy in bacterial metabolism: the phenotypic trade-off behind empirical growth rate distributions in E. coli
D. De Martino, F. Capuani, A. De Martino, Physical Biology 13 (2016).
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D. De Martino, F. Capuani, A. De Martino, Physical Biology 13 (2016).
2016 | Journal Article | IST-REx-ID: 1412 |

A practical method for high-resolution embedded liquid surfaces
R. Goldade, C. Batty, C. Wojtan, Computer Graphics Forum 35 (2016) 233–242.
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R. Goldade, C. Batty, C. Wojtan, Computer Graphics Forum 35 (2016) 233–242.