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3481 Publications
2013 | Journal Article | IST-REx-ID: 2290 |

ECHIDNA mediated post Golgi trafficking of auxin carriers for differential cell elongation
Y. Boutté, K. Jonsson, H. Mcfarlane, E. Johnson, D. Gendre, R. Swarup, J. Friml, L. Samuels, S. Robert, R. Bhalerao, PNAS 110 (2013) 16259–16264.
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Y. Boutté, K. Jonsson, H. Mcfarlane, E. Johnson, D. Gendre, R. Swarup, J. Friml, L. Samuels, S. Robert, R. Bhalerao, PNAS 110 (2013) 16259–16264.
2013 | Conference Paper | IST-REx-ID: 2294 |

Drosophila Embryo Stage Annotation using Label Propagation
T. Kazmar, E. Kvon, A. Stark, C. Lampert, in:, IEEE, 2013.
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T. Kazmar, E. Kvon, A. Stark, C. Lampert, in:, IEEE, 2013.
2013 | Conference Paper | IST-REx-ID: 2293 |

Learning to rank using privileged information
V. Sharmanska, N. Quadrianto, C. Lampert, in:, IEEE, 2013, pp. 825–832.
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V. Sharmanska, N. Quadrianto, C. Lampert, in:, IEEE, 2013, pp. 825–832.
2013 | Conference Paper | IST-REx-ID: 2291 |

Cryptographically enforced RBAC
A. Ferrara, G. Fuchsbauer, B. Warinschi, in:, IEEE, 2013, pp. 115–129.
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A. Ferrara, G. Fuchsbauer, B. Warinschi, in:, IEEE, 2013, pp. 115–129.
2013 | Conference Paper | IST-REx-ID: 2298 |

Local shape analysis for overlaid data structures
C. Dragoi, C. Enea, M. Sighireanu, in:, Springer, 2013, pp. 150–171.
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C. Dragoi, C. Enea, M. Sighireanu, in:, Springer, 2013, pp. 150–171.
2013 | Journal Article | IST-REx-ID: 2299 |

Synthesis of AMBA AHB from formal specification: A case study
Y. Godhal, K. Chatterjee, T.A. Henzinger, International Journal on Software Tools for Technology Transfer 15 (2013) 585–601.
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Y. Godhal, K. Chatterjee, T.A. Henzinger, International Journal on Software Tools for Technology Transfer 15 (2013) 585–601.
2013 | Journal Article | IST-REx-ID: 2297 |

Hot topics in cold gases: A mathematical physics perspective
R. Seiringer, Japanese Journal of Mathematics 8 (2013) 185–232.
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| arXiv
R. Seiringer, Japanese Journal of Mathematics 8 (2013) 185–232.
2013 | Book | IST-REx-ID: 2306 |

(Open) Linked Data in Bibliotheken
P. Danowski, A. Pohl, (Open) Linked Data in Bibliotheken, De Gruyter, 2013.
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P. Danowski, A. Pohl, (Open) Linked Data in Bibliotheken, De Gruyter, 2013.
2013 | Conference Paper | IST-REx-ID: 2305 |

Trading performance for stability in Markov decision processes
T. Brázdil, K. Chatterjee, V. Forejt, A. Kučera, in:, 28th Annual ACM/IEEE Symposium, IEEE, 2013, pp. 331–340.
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T. Brázdil, K. Chatterjee, V. Forejt, A. Kučera, in:, 28th Annual ACM/IEEE Symposium, IEEE, 2013, pp. 331–340.
2013 | Journal Article | IST-REx-ID: 2300 |

Realization of stripes and slabs in two and three dimensions
A. Giuliani, É. Lieb, R. Seiringer, Physical Review B 88 (2013).
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A. Giuliani, É. Lieb, R. Seiringer, Physical Review B 88 (2013).
2013 | Conference Paper | IST-REx-ID: 2328 |

Aspect-oriented linearizability proofs
T.A. Henzinger, A. Sezgin, V. Vafeiadis, 8052 (2013) 242–256.
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T.A. Henzinger, A. Sezgin, V. Vafeiadis, 8052 (2013) 242–256.
2013 | Journal Article | IST-REx-ID: 2412 |

Probabilistic models for CRISPR spacer content evolution
A. Kupczok, J.P. Bollback, BMC Evolutionary Biology 13 (2013) 54–54.
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A. Kupczok, J.P. Bollback, BMC Evolutionary Biology 13 (2013) 54–54.
2013 | Journal Article | IST-REx-ID: 2410 |

Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis
R.A. Fernandes Redondo, A. Kupczok, G. Stift, J.P. Bollback, Genome Announcements 1 (2013).
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R.A. Fernandes Redondo, A. Kupczok, G. Stift, J.P. Bollback, Genome Announcements 1 (2013).
2013 | Conference Paper | IST-REx-ID: 2445 |

Efficient synthesis for concurrency by semantics-preserving transformations
P. Cerny, T.A. Henzinger, A. Radhakrishna, L. Ryzhyk, T. Tarrach, in:, Springer, 2013, pp. 951–967.
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P. Cerny, T.A. Henzinger, A. Radhakrishna, L. Ryzhyk, T. Tarrach, in:, Springer, 2013, pp. 951–967.
2013 | Conference Paper | IST-REx-ID: 2447 |

Automating separation logic using SMT
R. Piskac, T. Wies, D. Zufferey, 8044 (2013) 773–789.
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R. Piskac, T. Wies, D. Zufferey, 8044 (2013) 773–789.
2013 | Journal Article | IST-REx-ID: 2443 |

Defining the selectivity of processes along the auxin response chain: A study using auxin analogues
S. Simon, M. Kubeš, P. Baster, S. Robert, P. Dobrev, J. Friml, J. Petrášek, E. Zažímalová, New Phytologist 200 (2013) 1034–1048.
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S. Simon, M. Kubeš, P. Baster, S. Robert, P. Dobrev, J. Friml, J. Petrášek, E. Zažímalová, New Phytologist 200 (2013) 1034–1048.
2013 | Conference Paper | IST-REx-ID: 2446 |

Automata with generalized Rabin pairs for probabilistic model checking and LTL synthesis
K. Chatterjee, A. Gaiser, J. Kretinsky, 8044 (2013) 559–575.
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| arXiv
K. Chatterjee, A. Gaiser, J. Kretinsky, 8044 (2013) 559–575.
2013 | Conference Paper | IST-REx-ID: 2444 |

Faster algorithms for Markov decision processes with low treewidth
K. Chatterjee, J. Ła̧Cki, 8044 (2013) 543–558.
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| arXiv
K. Chatterjee, J. Ła̧Cki, 8044 (2013) 543–558.
2013 | Journal Article | IST-REx-ID: 2448 |

ZIFL1.1 transporter modulates polar auxin transport by stabilizing membrane abundance of multiple PINs in Arabidopsis root tip
E. Remy, P. Baster, J. Friml, P. Duque, Plant Signaling & Behavior 8 (2013).
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E. Remy, P. Baster, J. Friml, P. Duque, Plant Signaling & Behavior 8 (2013).
2013 | Journal Article | IST-REx-ID: 2471 |

Mechanism of protein kinetic stabilization by engineered disulfide crosslinks
I. Sanchez-Romero, A. Ariza, K. Wilson, M. Skjøt, J. Vind, L. De Maria, L. Skov, J. Sánchez Ruiz, PLoS One 8 (2013).
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I. Sanchez-Romero, A. Ariza, K. Wilson, M. Skjøt, J. Vind, L. De Maria, L. Skov, J. Sánchez Ruiz, PLoS One 8 (2013).
2013 | Journal Article | IST-REx-ID: 2472 |

Role of the Arabidopsis PIN6 auxin transporter in auxin homeostasis and auxin-mediated development
C. Cazzonelli, M. Vanstraelen, S. Simon, K. Yin, A. Carron Arthur, N. Nisar, G. Tarle, A. Cuttriss, I. Searle, E. Benková, U. Mathesius, J. Masle, J. Friml, B. Pogson, PLoS One 8 (2013).
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C. Cazzonelli, M. Vanstraelen, S. Simon, K. Yin, A. Carron Arthur, N. Nisar, G. Tarle, A. Cuttriss, I. Searle, E. Benková, U. Mathesius, J. Masle, J. Friml, B. Pogson, PLoS One 8 (2013).
2013 | Journal Article | IST-REx-ID: 2470 |

Overexpression of the auxin binding PROTEIN1 modulates PIN-dependent auxin transport in tobacco cells
M. Čovanová, M. Sauer, J. Rychtář, J. Friml, J. Petrášek, E. Zažímalová, PLoS One 8 (2013).
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M. Čovanová, M. Sauer, J. Rychtář, J. Friml, J. Petrášek, E. Zažímalová, PLoS One 8 (2013).
2013 | Journal Article | IST-REx-ID: 2466 |

Highly adaptive liquid simulations on tetrahedral meshes
R. Ando, N. Thuerey, C. Wojtan, ACM Transactions on Graphics 32 (2013).
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R. Ando, N. Thuerey, C. Wojtan, ACM Transactions on Graphics 32 (2013).
2013 | Journal Article | IST-REx-ID: 2467 |

Putting holes in holey geometry: Topology change for arbitrary surfaces
G. Bernstein, C. Wojtan, ACM Transactions on Graphics 32 (2013).
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G. Bernstein, C. Wojtan, ACM Transactions on Graphics 32 (2013).
2013 | Journal Article | IST-REx-ID: 2468 |

Liquid surface tracking with error compensation
M. Bojsen-Hansen, C. Wojtan, ACM Transactions on Graphics 32 (2013).
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M. Bojsen-Hansen, C. Wojtan, ACM Transactions on Graphics 32 (2013).
2013 | Journal Article | IST-REx-ID: 2469 |

Three functions of cadherins in cell adhesion
J.-L. Maître, C.-P.J. Heisenberg, Current Biology 23 (2013) R626–R633.
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J.-L. Maître, C.-P.J. Heisenberg, Current Biology 23 (2013) R626–R633.
2013 | Journal Article | IST-REx-ID: 2473 |

Genetic hitch-hiking in spatially extended populations
N.H. Barton, A. Etheridge, J. Kelleher, A. Véber, Theoretical Population Biology 87 (2013) 75–89.
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N.H. Barton, A. Etheridge, J. Kelleher, A. Véber, Theoretical Population Biology 87 (2013) 75–89.
2013 | Conference Paper | IST-REx-ID: 2517 |

Formalizing and reasoning about quality
S. Almagor, U. Boker, O. Kupferman, 7966 (2013) 15–27.
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S. Almagor, U. Boker, O. Kupferman, 7966 (2013) 15–27.
2013 | Conference Paper | IST-REx-ID: 2518 |

The power of linear programming for finite-valued CSPs: A constructive characterization
V. Kolmogorov, in:, Springer, 2013, pp. 625–636.
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V. Kolmogorov, in:, Springer, 2013, pp. 625–636.
2013 | Conference Paper | IST-REx-ID: 2520 |

The supervised IBP: Neighbourhood preserving infinite latent feature models
N. Quadrianto, V. Sharmanska, D. Knowles, Z. Ghahramani, in:, Proceedings of the 29th Conference Uncertainty in Artificial Intelligence, AUAI Press, 2013, pp. 527–536.
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N. Quadrianto, V. Sharmanska, D. Knowles, Z. Ghahramani, in:, Proceedings of the 29th Conference Uncertainty in Artificial Intelligence, AUAI Press, 2013, pp. 527–536.
2013 | Journal Article | IST-REx-ID: 2698 |

Stability and semiclassics in self-generated fields
L. Erdös, S. Fournais, J. Solovej, Journal of the European Mathematical Society 15 (2013) 2093–2113.
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L. Erdös, S. Fournais, J. Solovej, Journal of the European Mathematical Society 15 (2013) 2093–2113.
2013 | Conference Paper | IST-REx-ID: 2718 |

Can quantitative and population genetics help us understand evolutionary computation?
N.H. Barton, T. Paixao, in:, Proceedings of the 15th Annual Conference on Genetic and Evolutionary Computation, ACM, 2013, pp. 1573–1580.
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N.H. Barton, T. Paixao, in:, Proceedings of the 15th Annual Conference on Genetic and Evolutionary Computation, ACM, 2013, pp. 1573–1580.
2013 | Journal Article | IST-REx-ID: 2720 |

Accumulation of spontaneous mutations in the ciliate Tetrahymena thermophila
H. Long, T. Paixao, R. Azevedo, R. Zufall, Genetics 195 (2013) 527–540.
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H. Long, T. Paixao, R. Azevedo, R. Zufall, Genetics 195 (2013) 527–540.
2013 | Journal Article | IST-REx-ID: 2782 |

Local eigenvalue density for general MANOVA matrices
L. Erdös, B. Farrell, Journal of Statistical Physics 152 (2013) 1003–1032.
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| arXiv
L. Erdös, B. Farrell, Journal of Statistical Physics 152 (2013) 1003–1032.
2013 | Conference Paper | IST-REx-ID: 2807 |

Extending continuous maps: Polynomiality and undecidability
M. Čadek, M. Krcál, J. Matoušek, L. Vokřínek, U. Wagner, in:, 45th Annual ACM Symposium on Theory of Computing, ACM, 2013, pp. 595–604.
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M. Čadek, M. Krcál, J. Matoušek, L. Vokřínek, U. Wagner, in:, 45th Annual ACM Symposium on Theory of Computing, ACM, 2013, pp. 595–604.
2013 | Journal Article | IST-REx-ID: 2808 |

The moss physcomitrella patens reproductive organ development is highly organized, affected by the two SHI/STY genes and by the level of active auxin in the SHI/STY expression domain
K. Landberg, E. Pederson, T. Viaene, B. Bozorg, J. Friml, H. Jönsson, M. Thelander, E. Sundberg, Plant Physiology 162 (2013) 1406–1419.
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K. Landberg, E. Pederson, T. Viaene, B. Bozorg, J. Friml, H. Jönsson, M. Thelander, E. Sundberg, Plant Physiology 162 (2013) 1406–1419.
2013 | Journal Article | IST-REx-ID: 2810 |

Environmental dependence of genetic constraint
M. de Vos, F. Poelwijk, N. Battich, J. Ndika, S. Tans, PLoS Genetics 9 (2013).
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M. de Vos, F. Poelwijk, N. Battich, J. Ndika, S. Tans, PLoS Genetics 9 (2013).
2013 | Journal Article | IST-REx-ID: 2814 |

The complexity of coverage
K. Chatterjee, L. Alfaro, R. Majumdar, International Journal of Foundations of Computer Science 24 (2013) 165–185.
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| arXiv
K. Chatterjee, L. Alfaro, R. Majumdar, International Journal of Foundations of Computer Science 24 (2013) 165–185.
2013 | Journal Article | IST-REx-ID: 2811 |

Nature of laminar-turbulence intermittency in shear flows
M. Avila, B. Hof, Physical Review E 87 (2013).
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| arXiv
M. Avila, B. Hof, Physical Review E 87 (2013).
2013 | Journal Article | IST-REx-ID: 2813 |

Elasto-inertial turbulence
D. Samanta, Y. Dubief, M. Holzner, C. Schäfer, A. Morozov, C. Wagner, B. Hof, PNAS 110 (2013) 10557–10562.
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D. Samanta, Y. Dubief, M. Holzner, C. Schäfer, A. Morozov, C. Wagner, B. Hof, PNAS 110 (2013) 10557–10562.
2013 | Conference Paper | IST-REx-ID: 2812 |

Homological reconstruction and simplification in R3
D. Attali, U. Bauer, O. Devillers, M. Glisse, A. Lieutier, in:, Proceedings of the 29th Annual Symposium on Computational Geometry, ACM, 2013, pp. 117–125.
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D. Attali, U. Bauer, O. Devillers, M. Glisse, A. Lieutier, in:, Proceedings of the 29th Annual Symposium on Computational Geometry, ACM, 2013, pp. 117–125.
2013 | Journal Article | IST-REx-ID: 2817 |

Density games
S. Novak, K. Chatterjee, M. Nowak, Journal of Theoretical Biology 334 (2013) 26–34.
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S. Novak, K. Chatterjee, M. Nowak, Journal of Theoretical Biology 334 (2013) 26–34.
2013 | Journal Article | IST-REx-ID: 2816 |

Evolutionary dynamics of cancer in response to targeted combination therapy
I. Božić, J. Reiter, B. Allen, T. Antal, K. Chatterjee, P. Shah, Y. Moon, A. Yaqubie, N. Kelly, D. Le, E. Lipson, P. Chapman, L. Diaz, B. Vogelstein, M. Nowak, ELife 2 (2013).
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I. Božić, J. Reiter, B. Allen, T. Antal, K. Chatterjee, P. Shah, Y. Moon, A. Yaqubie, N. Kelly, D. Le, E. Lipson, P. Chapman, L. Diaz, B. Vogelstein, M. Nowak, ELife 2 (2013).
2013 | Conference Paper | IST-REx-ID: 2819 |

Quantitative timed simulation functions and refinement metrics for real-time systems
K. Chatterjee, V. Prabhu, in:, Proceedings of the 16th International Conference on Hybrid Systems: Computation and Control, Springer, 2013, pp. 273–282.
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K. Chatterjee, V. Prabhu, in:, Proceedings of the 16th International Conference on Hybrid Systems: Computation and Control, Springer, 2013, pp. 273–282.
2013 | Journal Article | IST-REx-ID: 2818 |

Learning quadratic receptive fields from neural responses to natural stimuli
K. Rajan, O. Marre, G. Tkačik, Neural Computation 25 (2013) 1661–1692.
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| arXiv
K. Rajan, O. Marre, G. Tkačik, Neural Computation 25 (2013) 1661–1692.
2013 | Journal Article | IST-REx-ID: 2826 |

Mutations in SCO2 are associated with autosomal-dominant high-grade myopia
K. Tran Viet, C. Powell, V. Barathi, T. Klemm, S. Maurer Stroh, V. Limviphuvadh, V. Soler, C. Ho, T. Yanovitch, G. Schneider, Y. Li, E. Nading, R. Metlapally, S. Saw, L. Goh, S. Rozen, T. Young, American Journal of Human Genetics 92 (2013) 820–826.
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| PubMed | Europe PMC
K. Tran Viet, C. Powell, V. Barathi, T. Klemm, S. Maurer Stroh, V. Limviphuvadh, V. Soler, C. Ho, T. Yanovitch, G. Schneider, Y. Li, E. Nading, R. Metlapally, S. Saw, L. Goh, S. Rozen, T. Young, American Journal of Human Genetics 92 (2013) 820–826.
2013 | Journal Article | IST-REx-ID: 2822 |

3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture
C. Topp, A. Iyer Pascuzzi, J. Anderson, C. Lee, P. Zurek, O. Symonova, Y. Zheng, A. Bucksch, Y. Mileyko, T. Galkovskyi, B. Moore, J. Harer, H. Edelsbrunner, T. Mitchell Olds, J. Weitz, P. Benfey, PNAS 110 (2013) E1695–E1704.
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| PubMed | Europe PMC
C. Topp, A. Iyer Pascuzzi, J. Anderson, C. Lee, P. Zurek, O. Symonova, Y. Zheng, A. Bucksch, Y. Mileyko, T. Galkovskyi, B. Moore, J. Harer, H. Edelsbrunner, T. Mitchell Olds, J. Weitz, P. Benfey, PNAS 110 (2013) E1695–E1704.
2013 | Journal Article | IST-REx-ID: 2821 |

A major facilitator superfamily transporter plays a dual role in polar auxin transport and drought stress tolerance in Arabidopsis
E. Remy, T. Cabrito, P. Baster, R. Batista, M. Teixeira, J. Friml, I. Sá Correia, P. Duque, Plant Cell 25 (2013) 901–926.
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| PubMed | Europe PMC
E. Remy, T. Cabrito, P. Baster, R. Batista, M. Teixeira, J. Friml, I. Sá Correia, P. Duque, Plant Cell 25 (2013) 901–926.
2013 | Journal Article | IST-REx-ID: 2827 |

Salicylic acid interferes with clathrin-mediated endocytic protein trafficking
Y. Du, R. Tejos, M. Beck, E. Himschoot, H. Li, S. Robatzek, S. Vanneste, J. Friml, PNAS 110 (2013) 7946–7951.
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| PubMed | Europe PMC
Y. Du, R. Tejos, M. Beck, E. Himschoot, H. Li, S. Robatzek, S. Vanneste, J. Friml, PNAS 110 (2013) 7946–7951.
2013 | Journal Article | IST-REx-ID: 2832 |

Cell polarity and patterning by PIN trafficking through early endosomal compartments in arabidopsis thaliana
H. Tanaka, S. Kitakura, H. Rakusová, T. Uemura, M. Feraru, R. De Rycke, S. Robert, T. Kakimoto, J. Friml, PLoS Genetics 9 (2013).
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H. Tanaka, S. Kitakura, H. Rakusová, T. Uemura, M. Feraru, R. De Rycke, S. Robert, T. Kakimoto, J. Friml, PLoS Genetics 9 (2013).
2013 | Journal Article | IST-REx-ID: 2828 |

The complexity of conservative valued CSPs
V. Kolmogorov, S. Živný, Journal of the ACM 60 (2013).
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| arXiv
V. Kolmogorov, S. Živný, Journal of the ACM 60 (2013).
2013 | Journal Article | IST-REx-ID: 2829 |

Scale invariance at the onset of turbulence in couette flow
L. Shi, M. Avila, B. Hof, Physical Review Letters 110 (2013).
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| arXiv
L. Shi, M. Avila, B. Hof, Physical Review Letters 110 (2013).
2013 | Journal Article | IST-REx-ID: 2834 |

Streamwise-localized solutions at the onset of turbulence in pipe flow
M. Avila, F. Mellibovsky, N. Roland, B. Hof, Physical Review Letters 110 (2013).
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| arXiv
M. Avila, F. Mellibovsky, N. Roland, B. Hof, Physical Review Letters 110 (2013).
2013 | Journal Article | IST-REx-ID: 2842 |

Inference in two dimensions: Allele frequencies versus lengths of shared sequence blocks
N.H. Barton, A. Etheridge, J. Kelleher, A. Véber, Theoretical Population Biology 87 (2013) 105–119.
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N.H. Barton, A. Etheridge, J. Kelleher, A. Véber, Theoretical Population Biology 87 (2013) 105–119.
2013 | Journal Article | IST-REx-ID: 2838 |

Dyrk1A is dynamically expressed on subsets of motor neurons and in the neuromuscular junction: Possible role in Down syndrome
G. Arquè Fuste, A. Casanovas, M. Dierssen, PLoS One 8 (2013).
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G. Arquè Fuste, A. Casanovas, M. Dierssen, PLoS One 8 (2013).
2013 | Journal Article | IST-REx-ID: 2839 |

Interstitial dendritic cell guidance by haptotactic chemokine gradients
M. Weber, R. Hauschild, J. Schwarz, C. Moussion, I. de Vries, D. Legler, S. Luther, M.T. Bollenbach, M.K. Sixt, Science 339 (2013) 328–332.
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M. Weber, R. Hauschild, J. Schwarz, C. Moussion, I. de Vries, D. Legler, S. Luther, M.T. Bollenbach, M.K. Sixt, Science 339 (2013) 328–332.
2013 | Journal Article | IST-REx-ID: 2837 |

The local semicircle law for a general class of random matrices
L. Erdös, A. Knowles, H. Yau, J. Yin, Electronic Journal of Probability 18 (2013) 1–58.
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L. Erdös, A. Knowles, H. Yau, J. Yin, Electronic Journal of Probability 18 (2013) 1–58.
2013 | Journal Article | IST-REx-ID: 2835 |

Root ultraviolet b-sensitive1/weak auxin response3 is essential for polar auxin transport in arabidopsis
H. Yu, M. Karampelias, S. Robert, W. Peer, R. Swarup, S. Ye, L. Ge, J. Cohen, A. Murphy, J. Friml, M. Estelle, Plant Physiology 162 (2013) 965–976.
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| DOI
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| PubMed | Europe PMC
H. Yu, M. Karampelias, S. Robert, W. Peer, R. Swarup, S. Ye, L. Ge, J. Cohen, A. Murphy, J. Friml, M. Estelle, Plant Physiology 162 (2013) 965–976.
2013 | Journal Article | IST-REx-ID: 2836 |

Assume-guarantee synthesis for digital contract signing
K. Chatterjee, V. Raman, Formal Aspects of Computing 26 (2013) 825–859.
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| arXiv
K. Chatterjee, V. Raman, Formal Aspects of Computing 26 (2013) 825–859.
2013 | Conference Paper | IST-REx-ID: 2847 |

Structural Counter Abstraction
K. Bansal, E. Koskinen, T. Wies, D. Zufferey, 7795 (2013) 62–77.
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K. Bansal, E. Koskinen, T. Wies, D. Zufferey, 7795 (2013) 62–77.
2013 | Journal Article | IST-REx-ID: 2854 |

Strategy improvement for concurrent reachability and turn based stochastic safety games
K. Chatterjee, L. De Alfaro, T.A. Henzinger, Journal of Computer and System Sciences 79 (2013) 640–657.
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K. Chatterjee, L. De Alfaro, T.A. Henzinger, Journal of Computer and System Sciences 79 (2013) 640–657.
2013 | Journal Article | IST-REx-ID: 2850 |

The simplest maximum entropy model for collective behavior in a neural network
G. Tkačik, O. Marre, T. Mora, D. Amodei, M. Berry, W. Bialek, Journal of Statistical Mechanics Theory and Experiment 2013 (2013).
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G. Tkačik, O. Marre, T. Mora, D. Amodei, M. Berry, W. Bialek, Journal of Statistical Mechanics Theory and Experiment 2013 (2013).
2013 | Journal Article | IST-REx-ID: 2858 |

The effect of one additional driver mutation on tumor progression
J. Reiter, I. Božić, B. Allen, K. Chatterjee, M. Nowak, Evolutionary Applications 6 (2013) 34–45.
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J. Reiter, I. Božić, B. Allen, K. Chatterjee, M. Nowak, Evolutionary Applications 6 (2013) 34–45.
2013 | Journal Article | IST-REx-ID: 2857 |

Optical control of ligand-gated ion channels
S. Szobota, C. Mckenzie, H.L. Janovjak, Methods in Molecular Biology 998 (2013) 417–435.
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S. Szobota, C. Mckenzie, H.L. Janovjak, Methods in Molecular Biology 998 (2013) 417–435.
2013 | Journal Article | IST-REx-ID: 2860 |

Dynamic reconfiguration of hippocampal interneuron circuits during spatial learning
D. Dupret, J. O’Neill, J.L. Csicsvari, Neuron 78 (2013) 166–180.
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D. Dupret, J. O’Neill, J.L. Csicsvari, Neuron 78 (2013) 166–180.
2013 | Journal Article | IST-REx-ID: 2855 |

Mosaic analysis with double markers reveals cell type specific paternal growth dominance
S. Hippenmeyer, R. Johnson, L. Luo, Cell Reports 3 (2013) 960–967.
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S. Hippenmeyer, R. Johnson, L. Luo, Cell Reports 3 (2013) 960–967.
2013 | Journal Article | IST-REx-ID: 2856 |

Optical control of metabotropic glutamate receptors
J. Levitz, C. Pantoja, B. Gaub, H.L. Janovjak, A. Reiner, A. Hoagland, D. Schoppik, B. Kane, P. Stawski, A. Schier, D. Trauner, E. Isacoff, Nature Neuroscience 16 (2013) 507–516.
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J. Levitz, C. Pantoja, B. Gaub, H.L. Janovjak, A. Reiner, A. Hoagland, D. Schoppik, B. Kane, P. Stawski, A. Schier, D. Trauner, E. Isacoff, Nature Neuroscience 16 (2013) 507–516.
2013 | Journal Article | IST-REx-ID: 2859 |

Homology and robustness of level and interlevel sets
P. Bendich, H. Edelsbrunner, D. Morozov, A. Patel, Homology, Homotopy and Applications 15 (2013) 51–72.
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P. Bendich, H. Edelsbrunner, D. Morozov, A. Patel, Homology, Homotopy and Applications 15 (2013) 51–72.
2013 | Journal Article | IST-REx-ID: 2863 |

Stimulus-dependent maximum entropy models of neural population codes
E. Granot Atedgi, G. Tkačik, R. Segev, E. Schneidman, PLoS Computational Biology 9 (2013).
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E. Granot Atedgi, G. Tkačik, R. Segev, E. Schneidman, PLoS Computational Biology 9 (2013).
2013 | Journal Article | IST-REx-ID: 2862 |

Lethal giant larvae 2 regulates development of the ciliated organ Kupffer’s vesicle
H. Tay, S. Schulze, J. Compagnon, F. Foley, C.-P.J. Heisenberg, H.J. Yost, S. Abdelilah Seyfried, J. Amack, Development 140 (2013) 1550–1559.
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H. Tay, S. Schulze, J. Compagnon, F. Foley, C.-P.J. Heisenberg, H.J. Yost, S. Abdelilah Seyfried, J. Amack, Development 140 (2013) 1550–1559.
2013 | Journal Article | IST-REx-ID: 2883 |

Arabidopsis TWISTED DWARF1 functionally interacts with auxin exporter ABCB1 on the root plasma membrane
B. Wang, A. Bailly, M. Zwiewk, S. Henrichs, E. Azzarello, S. Mancuso, M. Maeshima, J. Friml, A. Schulz, M. Geisler, Plant Cell 25 (2013) 202–214.
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B. Wang, A. Bailly, M. Zwiewk, S. Henrichs, E. Azzarello, S. Mancuso, M. Maeshima, J. Friml, A. Schulz, M. Geisler, Plant Cell 25 (2013) 202–214.
2013 | Journal Article | IST-REx-ID: 2880 |

Auxin reflux between the endodermis and pericycle promotes lateral root initiation
P. Marhavý, M. Vanstraelen, B. De Rybel, D. Zhaojun, M. Bennett, T. Beeckman, E. Benková, EMBO Journal 32 (2013) 149–158.
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P. Marhavý, M. Vanstraelen, B. De Rybel, D. Zhaojun, M. Bennett, T. Beeckman, E. Benková, EMBO Journal 32 (2013) 149–158.
2013 | Journal Article | IST-REx-ID: 2882 |

Asymmetric gibberellin signaling regulates vacuolar trafficking of PIN auxin transporters during root gravitropism
C. Löfke, M. Zwiewka, I. Heilmann, M. Van Montagu, T. Teichmann, J. Friml, PNAS 110 (2013) 3627–3632.
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C. Löfke, M. Zwiewka, I. Heilmann, M. Van Montagu, T. Teichmann, J. Friml, PNAS 110 (2013) 3627–3632.
2013 | Conference Paper | IST-REx-ID: 2886 |

Controllable-choice message sequence graphs
M. Chmelik, V. Řehák, 7721 (2013) 118–130.
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M. Chmelik, V. Řehák, 7721 (2013) 118–130.
2013 | Journal Article | IST-REx-ID: 2887 |

Genotypic recognition and spatial responses by rice roots
S. Fang, R. Clark, Y. Zheng, A. Iyer Pascuzzi, J. Weitz, L. Kochian, H. Edelsbrunner, H. Liao, P. Benfey, PNAS 110 (2013) 2670–2675.
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S. Fang, R. Clark, Y. Zheng, A. Iyer Pascuzzi, J. Weitz, L. Kochian, H. Edelsbrunner, H. Liao, P. Benfey, PNAS 110 (2013) 2670–2675.
2013 | Conference Paper | IST-REx-ID: 2901 |

Computing the M most probable modes of a graphical model
C. Chen, V. Kolmogorov, Z. Yan, D. Metaxas, C. Lampert, in:, JMLR, 2013, pp. 161–169.
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C. Chen, V. Kolmogorov, Z. Yan, D. Metaxas, C. Lampert, in:, JMLR, 2013, pp. 161–169.
2013 | Conference Paper | IST-REx-ID: 2906 |

3D kinetic alpha complexes and their implementation
M. Kerber, H. Edelsbrunner, in:, 2013 Proceedings of the 15th Workshop on Algorithm Engineering and Experiments, Society of Industrial and Applied Mathematics, 2013, pp. 70–77.
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M. Kerber, H. Edelsbrunner, in:, 2013 Proceedings of the 15th Workshop on Algorithm Engineering and Experiments, Society of Industrial and Applied Mathematics, 2013, pp. 70–77.
2013 | Journal Article | IST-REx-ID: 2910 |

Coalescent simulation in continuous space
J. Kelleher, N.H. Barton, A. Etheridge, Bioinformatics 29 (2013) 955–956.
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J. Kelleher, N.H. Barton, A. Etheridge, Bioinformatics 29 (2013) 955–956.
2013 | Journal Article | IST-REx-ID: 2909 |

Modelling evolution in a spatial continuum
N.H. Barton, A. Etheridge, A. Véber, Journal of Statistical Mechanics Theory and Experiment 2013 (2013).
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N.H. Barton, A. Etheridge, A. Véber, Journal of Statistical Mechanics Theory and Experiment 2013 (2013).
2013 | Journal Article | IST-REx-ID: 2908 |

Does hybridisation influence speciation?
N.H. Barton, Journal of Evolutionary Biology 26 (2013) 267–269.
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N.H. Barton, Journal of Evolutionary Biology 26 (2013) 267–269.
2013 | Book Chapter | IST-REx-ID: 2907 |

Recombination and sex
N.H. Barton, in:, The Princeton Guide to Evolution, Princeton University Press, 2013, pp. 328–333.
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N.H. Barton, in:, The Princeton Guide to Evolution, Princeton University Press, 2013, pp. 328–333.
2013 | Journal Article | IST-REx-ID: 2914 |

Statistical thermodynamics of natural images
G. Stephens, T. Mora, G. Tkačik, W. Bialek, Physical Review Letters 110 (2013).
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G. Stephens, T. Mora, G. Tkačik, W. Bialek, Physical Review Letters 110 (2013).
2013 | Journal Article | IST-REx-ID: 2913 |

Retinal metric: a stimulus distance measure derived from population neural responses
G. Tkačik, E. Granot Atedgi, R. Segev, E. Schneidman, Physical Review Letters 110 (2013).
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G. Tkačik, E. Granot Atedgi, R. Segev, E. Schneidman, Physical Review Letters 110 (2013).
2013 | Journal Article | IST-REx-ID: 2919 |

SCF^TIR1 AFB-auxin signalling regulates PIN vacuolar trafficking and auxin fluxes during root gravitropism
P. Baster, S. Robert, J. Kleine Vehn, S. Vanneste, U. Kania, W. Grunewald, B. De Rybel, T. Beeckman, J. Friml, EMBO Journal 32 (2013) 260–274.
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P. Baster, S. Robert, J. Kleine Vehn, S. Vanneste, U. Kania, W. Grunewald, B. De Rybel, T. Beeckman, J. Friml, EMBO Journal 32 (2013) 260–274.
2013 | Journal Article | IST-REx-ID: 2920 |

Neurulation coordinating cell polarisation and lumen formation
J. Compagnon, C.-P.J. Heisenberg, EMBO Journal 32 (2013) 1–3.
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J. Compagnon, C.-P.J. Heisenberg, EMBO Journal 32 (2013) 1–3.
2013 | Conference Paper | IST-REx-ID: 2940 |

A counterexample to the chain rule for conditional HILL entropy, and what deniable encryption has to do with it
S. Krenn, K.Z. Pietrzak, A. Wadia, in:, A. Sahai (Ed.), Springer, 2013, pp. 23–39.
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S. Krenn, K.Z. Pietrzak, A. Wadia, in:, A. Sahai (Ed.), Springer, 2013, pp. 23–39.
2013 | Conference Paper | IST-REx-ID: 2948 |

Beyond dataset bias: Multi-task unaligned shared knowledge transfer
T. Tommasi, N. Quadrianto, B. Caputo, C. Lampert, 7724 (2013) 1–15.
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T. Tommasi, N. Quadrianto, B. Caputo, C. Lampert, 7724 (2013) 1–15.
2013 | Journal Article | IST-REx-ID: 2815 |

Add isotropic Gaussian kernels at own risk: More and more resilient modes in higher dimensions
H. Edelsbrunner, B.T. Fasy, G. Rote, Discrete & Computational Geometry 49 (2013) 797–822.
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H. Edelsbrunner, B.T. Fasy, G. Rote, Discrete & Computational Geometry 49 (2013) 797–822.
2013 | Journal Article | IST-REx-ID: 3261 |

Positional information, in bits
J. Dubuis, G. Tkačik, E. Wieschaus, T. Gregor, W. Bialek, PNAS 110 (2013) 16301–16308.
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J. Dubuis, G. Tkačik, E. Wieschaus, T. Gregor, W. Bialek, PNAS 110 (2013) 16301–16308.
2013 | Journal Article | IST-REx-ID: 2831 |

Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives
K. Chatterjee, M.H. Henzinger, M. Joglekar, N. Shah, Formal Methods in System Design 42 (2013) 301–327.
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| arXiv
K. Chatterjee, M.H. Henzinger, M. Joglekar, N. Shah, Formal Methods in System Design 42 (2013) 301–327.
2013 | Thesis | IST-REx-ID: 1405 |

Analysis of dynamic message passing programs
D. Zufferey, Analysis of Dynamic Message Passing Programs, IST Austria, 2013.
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D. Zufferey, Analysis of Dynamic Message Passing Programs, IST Austria, 2013.
2013 | Journal Article | IST-REx-ID: 450 |

Source population characteristics affect heterosis following genetic rescue of fragmented plant populations
M. Pickup, D. Field, D. Rowell, A. Young, Proceedings of the Royal Society of London Series B Biological Sciences 280 (2013).
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M. Pickup, D. Field, D. Rowell, A. Young, Proceedings of the Royal Society of London Series B Biological Sciences 280 (2013).
2013 | Journal Article | IST-REx-ID: 476 |

Aberrant neural synchrony in the maternal immune activation model: Using translatable measures to explore targeted interventions
D. Dickerson, D. Bilkey, Frontiers in Behavioral Neuroscience 7 (2013).
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D. Dickerson, D. Bilkey, Frontiers in Behavioral Neuroscience 7 (2013).
2013 | Journal Article | IST-REx-ID: 500 |

Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza
M. Ward, S. Lycett, D. Avila, J.P. Bollback, A. Leigh Brown, BMC Evolutionary Biology 13 (2013).
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M. Ward, S. Lycett, D. Avila, J.P. Bollback, A. Leigh Brown, BMC Evolutionary Biology 13 (2013).
2013 | Journal Article | IST-REx-ID: 501 |

A new species of tapir from the Amazon
M. Cozzuol, C. Clozato, E. Holanda, F. Rodrigues, S. Nienow, B. De Thoisy, R.A. Fernandes Redondo, F. Santos, Journal of Mammalogy 94 (2013) 1331–1345.
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M. Cozzuol, C. Clozato, E. Holanda, F. Rodrigues, S. Nienow, B. De Thoisy, R.A. Fernandes Redondo, F. Santos, Journal of Mammalogy 94 (2013) 1331–1345.
2013 | Journal Article | IST-REx-ID: 508 |

Evolutionary dynamics of the human NADPH oxidase genes CYBB, CYBA, NCF2, and NCF4: Functional implications
E. Tarazona Santos, M. Machado, W. Magalhães, R. Chen, F. Lyon, L. Burdett, A. Crenshaw, C. Fabbri, L. Pereira, L. Pinto, R.A. Fernandes Redondo, B. Sestanovich, M. Yeager, S. Chanock, Molecular Biology and Evolution 30 (2013) 2157–2167.
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E. Tarazona Santos, M. Machado, W. Magalhães, R. Chen, F. Lyon, L. Burdett, A. Crenshaw, C. Fabbri, L. Pereira, L. Pinto, R.A. Fernandes Redondo, B. Sestanovich, M. Yeager, S. Chanock, Molecular Biology and Evolution 30 (2013) 2157–2167.
2013 | Journal Article | IST-REx-ID: 509 |

The clathrin adaptor complex AP-2 mediates endocytosis of brassinosteroid INSENSITIVE1 in arabidopsis
S. Di Rubbo, N. Irani, S. Kim, Z. Xu, A. Gadeyne, W. Dejonghe, I. Vanhoutte, G. Persiau, D. Eeckhout, S. Simon, K. Song, J. Kleine Vehn, J. Friml, G. De Jaeger, D. Van Damme, I. Hwang, E. Russinova, Plant Cell 25 (2013) 2986–2997.
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S. Di Rubbo, N. Irani, S. Kim, Z. Xu, A. Gadeyne, W. Dejonghe, I. Vanhoutte, G. Persiau, D. Eeckhout, S. Simon, K. Song, J. Kleine Vehn, J. Friml, G. De Jaeger, D. Van Damme, I. Hwang, E. Russinova, Plant Cell 25 (2013) 2986–2997.
2013 | Journal Article | IST-REx-ID: 507 |

Adaptor protein complex 2-mediated endocytosis is crucial for male reproductive organ development in arabidopsis
S. Kim, Z. Xu, K. Song, D. Kim, H. Kang, I. Reichardt, E. Sohn, J. Friml, G. Juergens, I. Hwang, Plant Cell 25 (2013) 2970–2985.
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S. Kim, Z. Xu, K. Song, D. Kim, H. Kang, I. Reichardt, E. Sohn, J. Friml, G. Juergens, I. Hwang, Plant Cell 25 (2013) 2970–2985.
2013 | Journal Article | IST-REx-ID: 511 |

Regulation of auxin homeostasis and gradients in Arabidopsis roots through the formation of the indole-3-acetic acid catabolite 2-oxindole-3-acetic acid
A. Pěnčík, B. Simonovik, S. Petersson, E. Henyková, S. Simon, K. Greenham, Y. Zhang, M. Kowalczyk, M. Estelle, E. Zažímalová, O. Novák, G. Sandberg, K. Ljung, Plant Cell 25 (2013) 3858–3870.
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A. Pěnčík, B. Simonovik, S. Petersson, E. Henyková, S. Simon, K. Greenham, Y. Zhang, M. Kowalczyk, M. Estelle, E. Zažímalová, O. Novák, G. Sandberg, K. Ljung, Plant Cell 25 (2013) 3858–3870.
2013 | Journal Article | IST-REx-ID: 516 |

A map of cell type‐specific auxin responses
B. Bargmann, S. Vanneste, G. Krouk, T. Nawy, I. Efroni, E. Shani, G. Choe, J. Friml, D. Bergmann, M. Estelle, K. Birnbaum, Molecular Systems Biology 9 (2013).
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B. Bargmann, S. Vanneste, G. Krouk, T. Nawy, I. Efroni, E. Shani, G. Choe, J. Friml, D. Bergmann, M. Estelle, K. Birnbaum, Molecular Systems Biology 9 (2013).