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147 Publications


2005 | Journal Article | IST-REx-ID: 3933
Sixt MK, Kanazawa N, Selg M, Samson T, Roos G, Reinhardt D, Pabst R, Lutz M, Sorokin L. 2005. The conduit system transports soluble antigens from the afferent lymph to resident dendritic cells in the T cell area of the lymph node. Immunity. 22(1), 19–29.
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2005 | Journal Article | IST-REx-ID: 3983
Sohn J, Parks J, Buhrman G, Brown P, Kristjánsdóttir K, Safi A, Edelsbrunner H, Yang W, Rudolph J. 2005. Experimental validation of the docking orientation of Cdc25 with its Cdk2-CycA protein substrate. Biochemistry. 44(50), 16563–16573.
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2005 | Conference Paper | IST-REx-ID: 3982
Wang Y, Agarwal P, Brown P, Edelsbrunner H, Rudolph J. 2005. Coarse and reliable geometric alignment for protein docking. PSB: Pacific Symposium on Biocomputing, 64–75.
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2005 | Journal Article | IST-REx-ID: 4144
Ulrich F, Krieg M, Schötz E, Link V, Castanon I, Schnabel V, Taubenberger A, Müller D, Puech P, Heisenberg C-PJ. 2005. Wnt11 functions in gastrulation by controlling cell cohesion through Rab5c and E-cadherin. Developmental Cell. 9(4), 555–564.
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2005 | Journal Article | IST-REx-ID: 4138
Barton NH, Polechova J. 2005. The limitations of adaptive dynamics as a model of evolution. Journal of Evolutionary Biology. 18(5), 1186–1190.
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2005 | Journal Article | IST-REx-ID: 4155
Puech P, Taubenberger A, Ulrich F, Krieg M, Mueller D, Heisenberg C-PJ. 2005. Measuring cell adhesion forces of primary gastrulating cells from zebrafish using atomic force microscopy. Journal of Cell Science. 118(18), 4199–4206.
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2005 | Journal Article | IST-REx-ID: 4171
Montero J, Carvalho L, Wilsch Bräuninger M, Kilian B, Mustafa C, Heisenberg C-PJ. 2005. Shield formation at the onset of zebrafish gastrulation. Development. 132(6), 1187–1198.
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2005 | Journal Article | IST-REx-ID: 4249
Polechova J, Barton NH. 2005. Speciation through competition: A critical review. Evolution; International Journal of Organic Evolution. 59(6), 1194–1210.
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2005 | Journal Article | IST-REx-ID: 4251
Barton NH, Otto S. 2005. Evolution of recombination due to random drift. Genetics. 169(4), 2353–2370.
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2005 | Journal Article | IST-REx-ID: 4252 | OA
Johnson T, Barton NH. 2005. Theoretical models of selection and mutationon quantitative traits. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 360(1459), 1411–1425.
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2005 | Conference Paper | IST-REx-ID: 4404
Alur R, Cerny P, Madhusudan P, Nam W. 2005. Synthesis of interface specifications for Java classes. POPL: Principles of Programming Languages, 98–109.
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2005 | Conference Paper | IST-REx-ID: 4412
Matic S, Henzinger TA. 2005. Trading end-to-end latency for composability. RTSS: Real-Time Systems Symposium, 99–110.
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2005 | Conference Paper | IST-REx-ID: 4418
Kirsch C, Sanvido M, Henzinger TA. 2005. A programmable microkernel for real-time systems. VEE: Virtual Execution Environments, 35–45.
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2005 | Journal Article | IST-REx-ID: 4454
Henzinger TA, Majumdar R, Raskin J. 2005. A classification of symbolic transition systems. ACM Transactions on Computational Logic (TOCL). 6(1), 1–32.
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2005 | Conference Paper | IST-REx-ID: 4455
Henzinger TA, Majumdar R, Prabhu V. 2005. Quantifying similarities between timed systems. FORMATS: Formal Modeling and Analysis of Timed Systems, LNCS, vol. 3829, 226–241.
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2005 | Conference Paper | IST-REx-ID: 4456
Henzinger TA, Jhala R, Majumdar R. 2005. Permissive interfaces. FSE: Foundations of Software Engineering, 31–40.
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2005 | Conference Paper | IST-REx-ID: 4457
Henzinger TA, Kirsch C, Matic S. 2005. Composable code generation for distributed Giotto. LCTES: Languages, Compilers, and Tools for Embedded Systems, 21–30.
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2005 | Conference Paper | IST-REx-ID: 4536
Doyen L, Henzinger TA, Raskin J. 2005. Automatic rectangular refinement of affine hybrid systems. FORMATS: Formal Modeling and Analysis of Timed Systems, LNCS, vol. 3829, 144–161.
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2005 | Conference Paper | IST-REx-ID: 4541
Chatterjee K, Henzinger TA. 2005. Semiperfect-information games. FSTTCS: Foundations of Software Technology and Theoretical Computer Science, LNCS, vol. 3821, 1–18.
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2005 | Conference Paper | IST-REx-ID: 4553
Chatterjee K, De Alfaro L, Henzinger TA. 2005. The complexity of stochastic Rabin and Streett games. ICALP: Automata, Languages and Programming, LNCS, vol. 3580, 878–890.
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2005 | Conference Paper | IST-REx-ID: 4554
Chatterjee K, Henzinger TA, Jurdziński M. 2005. Mean-payoff parity games. LICS: Logic in Computer Science, 178–187.
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2005 | Conference Paper | IST-REx-ID: 4560
Chakrabarti A, Chatterjee K, Henzinger TA, Kupferman O, Majumdar R. 2005. Verifying quantitative properties using bound functions. CHARME: Correct Hardware Design and Verification Methods, LNCS, vol. 3725, 50–64.
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2005 | Conference Paper | IST-REx-ID: 4557
Chatterjee K, Henzinger TA, Jhala R, Majumdar R. 2005. Counterexample-guided planning. UAI: Uncertainty in Artificial Intelligence, 104–111.
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2005 | Conference Paper | IST-REx-ID: 4579
Beyer D, Henzinger TA, Jhala R, Majumdar R. 2005. Checking memory safety with BLAST. FASE: Fundamental Approaches To Software Engineering, LNCS, vol. 3442, 2–18.
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2005 | Conference Paper | IST-REx-ID: 4576
Beyer D, Chakrabarti A, Henzinger TA. 2005. Web service interfaces. WWW: World Wide Web Conference, 148–159.
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2005 | Journal Article | IST-REx-ID: 4625
De Alfaro L, Faella M, Henzinger TA, Majumdar R, Stoelinga M. 2005. Model checking discounted temporal properties. Theoretical Computer Science. 345(1), 139–170.
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2005 | Conference Paper | IST-REx-ID: 4624
De Alfaro L, Henzinger TA. 2005. Interface-based design. Engineering Theories of Software Intensive Systems, NATO Science Series: Mathematics, Physics, and Chemistry, vol. 195, 83–104.
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2005 | Conference Paper | IST-REx-ID: 575
Hosten O, Rakher M, Barreiro J, Peters N, Kwiat P. 2005. Counterfactual quantum computation. QELS: Quantum Electronics and Laser Science, QELS, vol. 1, 365–367.
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2005 | Journal Article | IST-REx-ID: 6153
de Bono M, Villu Maricq A. 2005. Neuronal substrates of complex behaviors in C. elegans. Annual Review of Neuroscience. 28, 451–501.
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2005 | Journal Article | IST-REx-ID: 6154
Cheung BHH, Cohen M, Rogers C, Albayram O, de Bono M. 2005. Experience-dependent modulation of C. elegans behavior by ambient oxygen. Current Biology. 15(10), 905–917.
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2005 | Journal Article | IST-REx-ID: 8028 | OA
Vogels TP, Abbott LF. 2005. Signal propagation and logic gating in networks of integrate-and-fire neurons. Journal of Neuroscience. 25(46), 10786–10795.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2005 | Journal Article | IST-REx-ID: 8029
Vogels TP, Rajan K, Abbott LF. 2005. Neural network dynamics. Annual Review of Neuroscience. 28(1), 357–376.
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2005 | Journal Article | IST-REx-ID: 9491 | OA
Tran RK, Henikoff JG, Zilberman D, Ditt RF, Jacobsen SE, Henikoff S. 2005. DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Current Biology. 15(2), 154–159.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2005 | Journal Article | IST-REx-ID: 9514 | OA
Tran RK, Zilberman D, de Bustos C, Ditt RF, Henikoff JG, Lindroth AM, Delrow J, Boyle T, Kwong S, Bryson TD, Jacobsen SE, Henikoff S. 2005. Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. Genome Biology. 6(11), R90.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2005 | Journal Article | IST-REx-ID: 843
Yampolsky L, Kondrashov F, Kondrashov A. 2005. Distribution of the strength of selection against amino acid replacements in human proteins. Human Molecular Genetics. 14(21), 3191–3201.
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2005 | Journal Article | IST-REx-ID: 8491
Schanda P, Kupče Ē, Brutscher B. 2005. SOFAST-HMQC experiments for recording two-dimensional deteronuclear correlation spectra of proteins within a few seconds. Journal of Biomolecular NMR. 33(4), 199–211.
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2005 | Journal Article | IST-REx-ID: 8492
Schanda P, Brutscher B. 2005. Very fast two-dimensional NMR spectroscopy for real-time investigation of dynamic events in proteins on the time scale of seconds. Journal of the American Chemical Society. 127(22), 8014–8015.
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2005 | Journal Article | IST-REx-ID: 8516
Bourgain J, Kaloshin V. 2005. On diffusion in high-dimensional Hamiltonian systems. Journal of Functional Analysis. 229(1), 1–61.
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2005 | Journal Article | IST-REx-ID: 877
Kondrashov F. 2005. The analysis of monomer sequences in protein and tRNA and the manifestation of the compensation of pathogenic deviations in their evolution. Biofizika. 50(3), 389–395.
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2005 | Journal Article | IST-REx-ID: 878
Kondrashov F. 2005. In search of the limits of evolution. Nature Genetics. 37(1), 9–10.
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2005 | Journal Article | IST-REx-ID: 882
Kondrashov F. 2005. Prediction of pathogenic mutations in mitochondrially encoded human tRNAs. Human Molecular Genetics. 14(16), 2415–2419.
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2005 | Journal Article | IST-REx-ID: 880
Kondrashov F. 2005. The convergent evolution of the secondary structure of mitochondrial cysteine tRNA in the nine-banded armadillo Dasypus novemcinctus. Biofizika. 50(3), 396–403.
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2005 | Journal Article | IST-REx-ID: 893
Jordan I, Kondrashov F, Adzhubeǐ I, Wolf Y, Koonin E, Kondrashov A, Sunyaev S. 2005. A universal trend of amino acid gain and loss in protein evolution. Nature. 433(7026), 633–638.
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2005 | Journal Article | IST-REx-ID: 9529
Zilberman D, Henikoff S. 2005. Epigenetic inheritance in Arabidopsis: Selective silence. Current Opinion in Genetics and Development. 15(5), 557–562.
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2005 | Journal Article | IST-REx-ID: 13431
Smoukov SK, Bishop KJM, Klajn R, Campbell CJ, Grzybowski BA. 2005. Cutting into solids with micropatterned gels. Advanced Materials. 17(11), 1361–1365.
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2005 | Journal Article | IST-REx-ID: 13433
Witt D, Klajn R, Barski P, Grzybowski B. 2005. Applications, properties and synthesis of w-functionalized n-alkanethiols and disulfides - the building blocks of self-assembled monolayers. Current Organic Chemistry. 8(18), 1763–1797.
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2005 | Journal Article | IST-REx-ID: 13432
Campbell CJ, Klajn R, Fialkowski M, Grzybowski BA. 2005. One-step multilevel microfabrication by reaction−diffusion. Langmuir. 21(1), 418–423.
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