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200 Publications


2006 | Journal Article | IST-REx-ID: 2894
D. Calado, T. Paixao, D. Holmberg, and M. Haury, “Stochastic Monoallelic Expression of IL 10 in T Cells,” Journal of Immunology, vol. 177, no. 8. American Association of Immunologists, pp. 5358–5364, 2006.
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2006 | Book Chapter | IST-REx-ID: 2921
V. Kolmogorov and R. Zabih, “Graph cut algorithms for binocular stereo with occlusions,” in Handbook of Mathematical Models in Computer Vision, Springer, 2006, pp. 423–427.
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2006 | Book Chapter | IST-REx-ID: 3002
M. Sauer and J. Friml, “In vitro culture of Arabidopsis embryos,” in Somatic Embryogenesis, vol. 2, A. Mujib and J. Šamaj, Eds. Springer, 2006, pp. 343–354.
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2006 | Journal Article | IST-REx-ID: 3005
J. Friml et al., “Apical-basal polarity: Why plant cells don’t stand on their heads,” Trends in Plant Science, vol. 11, no. 1. Cell Press, pp. 12–14, 2006.
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2006 | Journal Article | IST-REx-ID: 3006
P. Dhonukshe et al., “Endocytosis of cell surface material mediates cell plate formation during plant cytokinesis,” Developmental Cell, vol. 10, no. 1. Cell Press, pp. 137–150, 2006.
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2006 | Journal Article | IST-REx-ID: 3007
L. Abas et al., “Intracellular trafficking and proteolysis of the Arabidopsis auxin-efflux facilitator PIN2 are involved in root gravitropism,” Nature Cell Biology, vol. 8, no. 3. Nature Publishing Group, pp. 249–256, 2006.
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2006 | Journal Article | IST-REx-ID: 3008
J. Xu, H. Hofhuis, R. Heidstra, M. Sauer, J. Friml, and B. Scheres, “A molecular framework for plant regeneration,” Science, vol. 311, no. 5759. American Association for the Advancement of Science, pp. 385–388, 2006.
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2006 | Journal Article | IST-REx-ID: 3009 | OA
T. Paciorek and J. Friml, “Auxin signaling,” Journal of Cell Science, vol. 119, no. 7. Company of Biologists, pp. 1199–1202, 2006.
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2006 | Journal Article | IST-REx-ID: 3010
E. Scarpella, D. Marcos, J. Friml, and T. Berleth, “Control of leaf vascular patterning by polar auxin transport,” Genes and Development, vol. 20, no. 8. Cold Spring Harbor Laboratory Press, pp. 1015–1027, 2006.
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2006 | Journal Article | IST-REx-ID: 3011
J. Wiśniewska et al., “Polar PIN localization directs auxin flow in plants,” Science, vol. 312, no. 5775. American Association for the Advancement of Science, 2006.
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2006 | Journal Article | IST-REx-ID: 3012
Petrášek J, Mravec J, Bouchard R, Blakeslee J, Abas MF, Seifertová D, Wiśniewska J, Tadele Z, Kubeš M, Čovanová M, Dhonukshe P, Skůpa P, Benková E, Perry L, Křeček P, Lee O, Fink G, Geisler M, Murphy A, Luschnig C, Zažímalová E, Friml J. 2006. PIN proteins perform a rate-limiting function in cellular auxin efflux. Science. 312(5775), 914–918.
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2006 | Journal Article | IST-REx-ID: 3013
T. Paciorek, M. Sauer, J. Balla, J. Wiśniewska, and J. Friml, “Immunocytochemical technique for protein localization in sections of plant tissues,” Nature Protocols, vol. 1, no. 1. Nature Publishing Group, pp. 104–107, 2006.
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2006 | Journal Article | IST-REx-ID: 3014
P. Brewer, M. Heisler, J. Hejátko, J. Friml, and E. Benková, “In situ hybridization for mRNA detection in Arabidopsis tissue sections,” Nature Protocols, vol. 1, no. 3. Nature Publishing Group, pp. 1462–1467, 2006.
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2006 | Journal Article | IST-REx-ID: 3015
M. Sauer, T. Paciorek, E. Benková, and J. Friml, “Immunocytochemical techniques for whole mount in situ protein localization in plants,” Nature Protocols, vol. 1, no. 1. Nature Publishing Group, pp. 98–103, 2006.
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2006 | Journal Article | IST-REx-ID: 3016
M. Sauer et al., “Canalization of auxin flow by Aux/IAA-ARF-dependent feedback regulation of PIN polarity,” Genes and Development, vol. 20, no. 20. Cold Spring Harbor Laboratory Press, pp. 2902–2911, 2006.
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2006 | Journal Article | IST-REx-ID: 3017
H. Tanaka, P. Dhonukshe, P. Brewer, and J. Friml, “Spatiotemporal asymmetric auxin distribution: A means to coordinate plant development,” Cellular and Molecular Life Sciences, vol. 63, no. 23. Birkhäuser, pp. 2738–2754, 2006.
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2006 | Journal Article | IST-REx-ID: 3018
J. Kleine Vehn, P. Dhonukshe, R. Swarup, M. Bennett, and J. Friml, “Subcellular trafficking of the Arabidopsis auxin influx carrier AUX1 uses a novel pathway distinct from PIN1,” Plant Cell, vol. 18, no. 11. American Society of Plant Biologists, pp. 3171–3181, 2006.
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2006 | Journal Article | IST-REx-ID: 3020
J. Hejátko, I. Blilou, P. Brewer, J. Friml, B. Scheres, and E. Benková, “In situ hybridization technique for mRNA detection in whole mount Arabidopsis samples,” Nature Protocols, vol. 1, no. 4. Nature Publishing Group, pp. 1939–1946, 2006.
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2006 | Journal Article | IST-REx-ID: 3152
P. Kunwar, D. E. Siekhaus, and R. Lehmann, “In vivo migration A germ cell perspective,” Annual Review of Cell and Developmental Biology, vol. 22. Annual Reviews, pp. 237–265, 2006.
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2006 | Conference Paper | IST-REx-ID: 3180
R. Szeliski et al., “A comparative study of energy minimization methods for Markov random fields,” presented at the ECCV: European Conference on Computer Vision, 2006, vol. 3952, pp. 16–29.
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2006 | Conference Paper | IST-REx-ID: 3184
V. Kolmogorov and C. Rother, “Comparison of energy minimization algorithms for highly connected graphs,” presented at the ECCV: European Conference on Computer Vision, 2006, vol. 3952 LNCS, pp. 1–15.
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2006 | Journal Article | IST-REx-ID: 3185
V. Kolmogorov, A. Criminisi, A. Blake, G. Cross, and C. Rother, “Probabilistic fusion of stereo with color and contrast for bilayer segmentation,” IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 28, no. 9. IEEE, pp. 1480–1492, 2006.
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2006 | Conference Paper | IST-REx-ID: 3186
Y. Boykov, V. Kolmogorov, D. Cremers, and A. Delong, “An integral solution to surface evolution PDEs via geo cuts,” presented at the ECCV: European Conference on Computer Vision, 2006, vol. 3953, pp. 409–422.
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2006 | Conference Paper | IST-REx-ID: 3188
C. Rother, V. Kolmogorov, T. Minka, and A. Blake, “Cosegmentation of image pairs by histogram matching - Incorporating a global constraint into MRFs,” presented at the CVPR: Computer Vision and Pattern Recognition, 2006, pp. 993–1000.
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2006 | Conference Paper | IST-REx-ID: 3189
A. Criminisi, G. Cross, A. Blake, and V. Kolmogorov, “Bilayer segmentation of live video,” presented at the CVPR: Computer Vision and Pattern Recognition, 2006, vol. 1, pp. 53–60.
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2006 | Journal Article | IST-REx-ID: 3190
V. Kolmogorov, “Convergent tree reweighted message passing for energy minimization,” IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 28, no. 10. IEEE, pp. 1568–1583, 2006.
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2006 | Conference Paper | IST-REx-ID: 3214
U. Maurer, Y. Oswald, K. Z. Pietrzak, and J. Sjödin, “Luby Rackoff ciphers from weak round functions ,” presented at the EUROCRYPT: Theory and Applications of Cryptographic Techniques, 2006, vol. 4004, pp. 391–408.
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2006 | Conference Paper | IST-REx-ID: 3215
Y. Dodis, K. Z. Pietrzak, and B. Przydatek, “Separating sources for encryption and secret sharing,” presented at the TCC: Theory of Cryptography Conference, 2006, vol. 3876, pp. 601–616.
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2006 | Conference Paper | IST-REx-ID: 3216
K. Z. Pietrzak, “A tight bound for EMAC,” presented at the ICALP: Automata, Languages and Programming, 2006, vol. 4052, pp. 168–179.
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2006 | Conference Paper | IST-REx-ID: 3217
K. Z. Pietrzak, “Composition implies adaptive security in minicrypt,” presented at the EUROCRYPT: Theory and Applications of Cryptographic Techniques, 2006, vol. 4004, pp. 328–338.
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2006 | Book Chapter | IST-REx-ID: 3404
H. L. Janovjak, R. Sawhney, M. Stark, and D. Mueller, “Atomic force microscopy,” in Techniques in Microscopy for Biomedical Applications, vol. 2, World Scientific Publishing, 2006, pp. 213–284.
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2006 | Journal Article | IST-REx-ID: 3413
M. Kessler, K. Gottschalk, H. L. Janovjak, D. Mueller, and H. Gaub, “Bacteriorhodopsin folds into the membrane against an external force,” Journal of Molecular Biology, vol. 357, no. 2. Elsevier, pp. 644–654, 2006.
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2006 | Journal Article | IST-REx-ID: 3414
A. Kedrov, H. L. Janovjak, C. Ziegler, W. Kühlbrandt, and D. Mueller, “Observing folding pathways and kinetics of a single sodium-proton antiporter from Escherichia coli,” Journal of Molecular Biology, vol. 355, no. 1. Elsevier, pp. 2–8, 2006.
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2006 | Book Review | IST-REx-ID: 3415
H. L. Janovjak, A. Kedrov, D. Cisneros, T. Sapra, J. Struckmeier, and D. Mueller, “Imaging and detecting molecular interactions of single membrane proteins,” Neurobiology of Aging, vol. 27. Elsevier, pp. 546–561, 2006.
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2006 | Journal Article | IST-REx-ID: 8488
P. Schanda, H. Van Melckebeke, and B. Brutscher, “Speeding up three-dimensional protein NMR experiments to a few minutes,” Journal of the American Chemical Society, vol. 128, no. 28. American Chemical Society, pp. 9042–9043, 2006.
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2006 | Journal Article | IST-REx-ID: 8489
P. Schanda, V. Forge, and B. Brutscher, “HET-SOFAST NMR for fast detection of structural compactness and heterogeneity along polypeptide chains,” Magnetic Resonance in Chemistry, vol. 44, no. S1. Wiley, pp. S177–S184, 2006.
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2006 | Journal Article | IST-REx-ID: 8490
P. Schanda and B. Brutscher, “Hadamard frequency-encoded SOFAST-HMQC for ultrafast two-dimensional protein NMR,” Journal of Magnetic Resonance, vol. 178, no. 2. Elsevier, pp. 334–339, 2006.
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2006 | Journal Article | IST-REx-ID: 8513
V. Kaloshin and M. Saprykina, “Generic 3-dimensional volume-preserving diffeomorphisms with superexponential growth of number of periodic orbits,” Discrete & Continuous Dynamical Systems - A, vol. 15, no. 2. American Institute of Mathematical Sciences (AIMS), pp. 611–640, 2006.
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2006 | Journal Article | IST-REx-ID: 8514
W. OTT, B. HUNT, and V. Kaloshin, “The effect of projections on fractal sets and measures in Banach spaces,” Ergodic Theory and Dynamical Systems, vol. 26, no. 3. Cambridge University Press, pp. 869–891, 2006.
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2006 | Conference Paper | IST-REx-ID: 8515
V. Kaloshin, D. DOLGOPYAT, and L. KORALOV, “Long time behaviour of periodic stochastic flows,” in XIVth International Congress on Mathematical Physics, Lisbon, Portugal, 2006, pp. 290–295.
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2006 | Journal Article | IST-REx-ID: 854
E. Rogaev et al., “Complete mitochondrial genome and phylogeny of pleistocene mammoth Mammuthus primigenius,” PLoS Biology, vol. 4, no. 3. Public Library of Science, pp. 0403–0410, 2006.
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2006 | Conference Paper | IST-REx-ID: 4431
T. A. Henzinger and J. Sifakis, “The embedded systems design challenge,” presented at the FM: Formal Methods, 2006, vol. 4085, pp. 1–15.
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2006 | Conference Paper | IST-REx-ID: 4432
T. A. Henzinger and V. Prabhu, “Timed alternating-time temporal logic,” presented at the FORMATS: Formal Modeling and Analysis of Timed Systems, 2006, vol. 4202, pp. 1–17.
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2006 | Conference Paper | IST-REx-ID: 4436
T. A. Henzinger and S. Matic, “An interface algebra for real-time components,” presented at the RTAS: Real-time and Embedded Technology and Applications Symposium, 2006, pp. 253–266.
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2006 | Conference Paper | IST-REx-ID: 4437
T. A. Henzinger and N. Piterman, “Solving games without determinization,” presented at the CSL: Computer Science Logic, 2006, vol. 4207, pp. 395–410.
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2006 | Journal Article | IST-REx-ID: 4451
T. A. Henzinger, O. Kupferman, and R. Majumdar, “On the universal and existential fragments of the mu-calculus,” Theoretical Computer Science, vol. 354, no. 2. Elsevier, pp. 173–186, 2006.
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2006 | Conference Paper | IST-REx-ID: 4523
B. Gulavani, T. A. Henzinger, Y. Kannan, A. Nori, and S. Rajamani, “Synergy: A new algorithm for property checking,” presented at the FSE: Foundations of Software Engineering, 2006, pp. 117–127.
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2006 | Conference Paper | IST-REx-ID: 4526
A. Ghosal, T. A. Henzinger, D. Iercan, C. Kirsch, and A. Sangiovanni Vincentelli, “A hierarchical coordination language for interacting real-time tasks,” presented at the EMSOFT: Embedded Software , 2006, pp. 132–141.
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2006 | Conference Paper | IST-REx-ID: 4528
J. Fisher and T. A. Henzinger, “Executable biology,” presented at the WSC: Winter Simulation Conference, 2006, pp. 1675–1682.
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2006 | Conference Paper | IST-REx-ID: 4538
K. Chatterjee and T. A. Henzinger, “Strategy improvement and randomized subexponential algorithms for stochastic parity games,” presented at the STACS: Theoretical Aspects of Computer Science, 2006, vol. 3884, pp. 512–523.
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