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308 Publications
2011 | Conference Paper | IST-REx-ID: 3204
V. Kolmogorov, “Submodularity on a tree: Unifying Submodularity on a tree: Unifying L-convex and bisubmodular functions convex and bisubmodular functions,” presented at the MFCS: Mathematical Foundations of Computer Science, 2011, vol. 6907, pp. 400–411.
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2011 | Conference Paper | IST-REx-ID: 3206
A. Osokin, D. Vetrov, and V. Kolmogorov, “Submodular decomposition framework for inference in associative Markov networks with global constraints,” presented at the CVPR: Computer Vision and Pattern Recognition, 2011, pp. 1889–1896.
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2011 | Conference Paper | IST-REx-ID: 3205
D. Tarlow, D. Batra, P. Kohli, and V. Kolmogorov, “Dynamic tree block coordinate ascent,” presented at the ICML: International Conference on Machine Learning, 2011, pp. 113–120.
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2011 | Conference Paper | IST-REx-ID: 3266
A. Ion, J. Carreira, and C. Sminchisescu, “Probabilistic joint image segmentation and labeling,” in NIPS Proceedings, Granada, Spain, 2011, vol. 24, pp. 1827–1835.
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2011 | Journal Article | IST-REx-ID: 3269 |

Y. Sheng, B. Cutler, C. Chen, and J. Nasman, “Perceptual global illumination cancellation in complex projection environments,” Computer Graphics Forum, vol. 30, no. 4. Wiley-Blackwell, pp. 1261–1268, 2011.
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2011 | Journal Article | IST-REx-ID: 3267
C. Chen and D. Freedman, “Hardness results for homology localization,” Discrete & Computational Geometry, vol. 45, no. 3. Springer, pp. 425–448, 2011.
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2011 | Book Chapter | IST-REx-ID: 3268
D. Freedman and C. Chen, “Algebraic topology for computer vision,” in Computer Vision, Nova Science Publishers, 2011, pp. 239–268.
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2011 | Journal Article | IST-REx-ID: 3288 |

M. Smutny, S. Wu, G. Gomez, S. Mangold, A. Yap, and N. Hamilton, “Multicomponent analysis of junctional movements regulated by Myosin II isoforms at the epithelial zonula adherens,” PLoS One, vol. 6, no. 7. Public Library of Science, 2011.
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2011 | Journal Article | IST-REx-ID: 3285
V. Ruprecht, S. Wieser, D. Marguet, and G. Schuetz, “Spot variation fluorescence correlation spectroscopy allows for superresolution chronoscopy of confinement times in membranes,” Biophysical Journal, vol. 100, no. 11. Biophysical Society, pp. 2839–2845, 2011.
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2011 | Conference Paper | IST-REx-ID: 3302 |

T. A. Henzinger, A. Singh, V. Singh, T. Wies, and D. Zufferey, “Static scheduling in clouds,” presented at the HotCloud: Workshop on Hot Topics in Cloud Computing, 2011, pp. 1–6.
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2011 | Conference Paper | IST-REx-ID: 3301 |

T. A. Henzinger and M. Mateescu, “Tail approximation for the chemical master equation,” presented at the WCSB: Workshop on Computational Systems Biology (TICSP), 2011.
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2011 | Conference Paper | IST-REx-ID: 3299 |

T. A. Henzinger and M. Mateescu, “Propagation models for computing biochemical reaction networks,” presented at the CMSB: Computational Methods in Systems Biology, Paris, France, 2011, pp. 1–3.
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2011 | Journal Article | IST-REx-ID: 3320 |

S. Nowozin and C. Lampert, “Structured learning and prediction in computer vision,” Foundations and Trends in Computer Graphics and Vision, vol. 6, no. 3–4. now, pp. 185–365, 2011.
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2011 | Conference Paper | IST-REx-ID: 3316 |

R. Bloem, K. Chatterjee, K. Greimel, T. A. Henzinger, and B. Jobstmann, “Specification-centered robustness,” in 6th IEEE International Symposium on Industrial and Embedded Systems, Vasteras, Sweden, 2011, pp. 176–185.
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2011 | Conference Paper | IST-REx-ID: 3319
N. Quadrianto and C. Lampert, “Learning multi-view neighborhood preserving projections,” presented at the ICML: International Conference on Machine Learning, Bellevue, USA, 2011, pp. 425–432.
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2011 | Journal Article | IST-REx-ID: 3318 |

E. Eggermann and P. M. Jonas, “How the ‘slow’ Ca(2+) buffer parvalbumin affects transmitter release in nanodomain coupling regimes at GABAergic synapses,” Nature Neuroscience, vol. 15. Nature Publishing Group, pp. 20–22, 2011.
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2011 | Book Chapter | IST-REx-ID: 3335 |

R. Van De Weygaert et al., “Alpha, Betti and the Megaparsec Universe: On the topology of the Cosmic Web,” in Transactions on Computational Science XIV, vol. 6970, M. Gavrilova, K. Tan, and M. Mostafavi, Eds. Springer, 2011, pp. 60–101.
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| arXiv
2011 | Conference Paper | IST-REx-ID: 3329 |

E. Berberich, D. Halperin, M. Kerber, and R. Pogalnikova, “Deconstructing approximate offsets,” in Proceedings of the twenty-seventh annual symposium on Computational geometry, Paris, France, 2011, pp. 187–196.
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2011 | Journal Article | IST-REx-ID: 3332 |

M. Kerber and M. Sagraloff, “A note on the complexity of real algebraic hypersurfaces,” Graphs and Combinatorics, vol. 27, no. 3. Springer, pp. 419–430, 2011.
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2011 | Conference Paper | IST-REx-ID: 3330 |

M. Kerber and M. Sagraloff, “Root refinement for real polynomials,” presented at the ISSAC: International Symposium on Symbolic and Algebraic Computation, California, USA, 2011, pp. 209–216.
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| arXiv
2011 | Conference Paper | IST-REx-ID: 3328 |

E. Berberich, M. Hemmer, and M. Kerber, “A generic algebraic kernel for non linear geometric applications,” presented at the SCG: Symposium on Computational Geometry, Paris, France, 2011, pp. 179–186.
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2011 | Journal Article | IST-REx-ID: 3353 |

S. Tripakis, B. Lickly, T. A. Henzinger, and E. Lee, “A theory of synchronous relational interfaces,” ACM Transactions on Programming Languages and Systems (TOPLAS), vol. 33, no. 4. ACM, 2011.
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2011 | Conference Paper | IST-REx-ID: 3355 |

R. Halalai, T. A. Henzinger, and V. Singh, “Quantitative evaluation of BFT protocols,” presented at the QEST: Quantitative Evaluation of Systems, Aachen, Germany, 2011, pp. 255–264.
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2011 | Conference Paper | IST-REx-ID: 3351 |

K. Chatterjee, L. Doyen, and R. Singh, “On memoryless quantitative objectives,” presented at the FCT: Fundamentals of Computation Theory, Oslo, Norway, 2011, vol. 6914, pp. 148–159.
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2011 | Journal Article | IST-REx-ID: 3354
K. Chatterjee, L. De Alfaro, and T. A. Henzinger, “Qualitative concurrent parity games,” ACM Transactions on Computational Logic (TOCL), vol. 12, no. 4. ACM, 2011.
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2011 | Conference Paper | IST-REx-ID: 3349 |

K. Chatterjee and N. Fijalkow, “A reduction from parity games to simple stochastic games,” presented at the GandALF: Games, Automata, Logic, and Formal Verification, Minori, Italy, 2011, vol. 54, pp. 74–86.
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2011 | Conference Paper | IST-REx-ID: 3362 |

J. Fisher, T. A. Henzinger, D. Nickovic, N. Piterman, A. Singh, and M. Vardi, “Dynamic reactive modules,” presented at the CONCUR: Concurrency Theory, Aachen, Germany, 2011, vol. 6901, pp. 404–418.
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2011 | Conference Paper | IST-REx-ID: 3365 |

K. Chatterjee, T. A. Henzinger, B. Jobstmann, and R. Singh, “QUASY: quantitative synthesis tool,” presented at the TACAS: Tools and Algorithms for the Construction and Analysis of Systems, Saarbrucken, Germany, 2011, vol. 6605, pp. 267–271.
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2011 | Conference Paper | IST-REx-ID: 3367
C. Chen and M. Kerber, “An output sensitive algorithm for persistent homology,” presented at the SoCG: Symposium on Computational Geometry, Paris, France, 2011, pp. 207–216.
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2011 | Preprint | IST-REx-ID: 3363 |

K. Chatterjee, T. A. Henzinger, and M. Tracol, “The decidability frontier for probabilistic automata on infinite words.” ArXiv.
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| arXiv
2011 | Journal Article | IST-REx-ID: 3372 |

Abbot P et al. 2011. Inclusive fitness theory and eusociality. Nature. 471(7339), E1–E4.
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| PubMed | Europe PMC
2011 | Journal Article | IST-REx-ID: 3371 |

M. K. Sixt and C. Parent, “Cells on the move in Philadelphia,” Molecular Biology and Evolution, vol. 22, no. 6. Oxford University Press, p. 724, 2011.
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2011 | Journal Article | IST-REx-ID: 3374 |

G. Tkačik and A. Walczak, “Information transmission in genetic regulatory networks a review,” Journal of Physics: Condensed Matter, vol. 23, no. 15. IOP Publishing Ltd., 2011.
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2011 | Journal Article | IST-REx-ID: 3368 |

G. Krens, S. Möllmert, and C.-P. J. Heisenberg, “Enveloping cell layer differentiation at the surface of zebrafish germ layer tissue explants,” PNAS, vol. 108, no. 3. National Academy of Sciences, pp. E9–E10, 2011.
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| PubMed | Europe PMC
2011 | Journal Article | IST-REx-ID: 3370 |

A. Kupczok, “Consequences of different null models on the tree shape bias of supertree methods,” Systematic Biology, vol. 60, no. 2. Oxford University Press, pp. 218–225, 2011.
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2011 | Journal Article | IST-REx-ID: 3373 |

M. Jahnel, M. Behrndt, A. Jannasch, E. Schaeffer, and S. Grill, “Measuring the complete force field of an optical trap,” Optics Letters, vol. 36, no. 7. OSA, pp. 1260–1262, 2011.
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2011 | Journal Article | IST-REx-ID: 3396 |

P. Stockinger, C.-P. J. Heisenberg, and J.-L. Maître, “Defective neuroepithelial cell cohesion affects tangential branchiomotor neuron migration in the zebrafish neural tube,” Development, vol. 138, no. 21. Company of Biologists, pp. 4673–4683, 2011.
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2011 | Journal Article | IST-REx-ID: 3393 |

N. H. Barton and M. Turelli, “Spatial waves of advance with bistable dynamics: Cytoplasmic and genetic analogues of Allee effects,” American Naturalist, vol. 178, no. 3. University of Chicago Press, pp. E48–E75, 2011.
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2011 | Journal Article | IST-REx-ID: 3394 |

J. Polechova and N. H. Barton, “Genetic drift widens the expected cline but narrows the expected cline width,” Genetics, vol. 189, no. 1. Genetics Society of America, pp. 227–235, 2011.
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