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408 Publications
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2015 | Journal Article | IST-REx-ID: 1574 |

A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development
Chen Q, Liu Y, Maere S, Lee E, Van Isterdael G, Xie Z, Xuan W, Lucas J, Vassileva V, Kitakura S, Marhavý P, Wabnik KT, Geldner N, Benková E, Le J, Fukaki H, Grotewold E, Li C, Friml J, Sack F, Beeckman T, Vanneste S. 2015. A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development. Nature Communications. 6, 8821.
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Chen Q, Liu Y, Maere S, Lee E, Van Isterdael G, Xie Z, Xuan W, Lucas J, Vassileva V, Kitakura S, Marhavý P, Wabnik KT, Geldner N, Benková E, Le J, Fukaki H, Grotewold E, Li C, Friml J, Sack F, Beeckman T, Vanneste S. 2015. A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development. Nature Communications. 6, 8821.
2015 | Journal Article | IST-REx-ID: 1575 |

Cell migration and antigen capture are antagonistic processes coupled by myosin II in dendritic cells
M. Chabaud, M. Heuzé, M. Bretou, P. Vargas, P. Maiuri, P. Solanes, M. Maurin, E. Terriac, M. Le Berre, D. Lankar, T. Piolot, R. Adelstein, Y. Zhang, M.K. Sixt, J. Jacobelli, O. Bénichou, R. Voituriez, M. Piel, A. Lennon Duménil, Nature Communications 6 (2015).
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M. Chabaud, M. Heuzé, M. Bretou, P. Vargas, P. Maiuri, P. Solanes, M. Maurin, E. Terriac, M. Le Berre, D. Lankar, T. Piolot, R. Adelstein, Y. Zhang, M.K. Sixt, J. Jacobelli, O. Bénichou, R. Voituriez, M. Piel, A. Lennon Duménil, Nature Communications 6 (2015).
2015 | Journal Article | IST-REx-ID: 1576 |

Stochastic proofreading mechanism alleviates crosstalk in transcriptional regulation
S.A. Cepeda Humerez, G. Rieckh, G. Tkačik, Physical Review Letters 115 (2015).
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S.A. Cepeda Humerez, G. Rieckh, G. Tkačik, Physical Review Letters 115 (2015).
2015 | Journal Article | IST-REx-ID: 1577 |

Birth of a new gene on the Y chromosome of Drosophila melanogaster
A. Carvalho, B. Vicoso, C. Russo, B. Swenor, A. Clark, PNAS 112 (2015) 12450–12455.
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A. Carvalho, B. Vicoso, C. Russo, B. Swenor, A. Clark, PNAS 112 (2015) 12450–12455.
2015 | Journal Article | IST-REx-ID: 1578
Triangulations from topologically correct digital Voronoi diagrams
T. Cao, H. Edelsbrunner, T. Tan, Computational Geometry 48 (2015) 507–519.
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| DOI
T. Cao, H. Edelsbrunner, T. Tan, Computational Geometry 48 (2015) 507–519.
2015 | Journal Article | IST-REx-ID: 1579 |

Galois groups of Schubert problems of lines are at least alternating
C. Brooks, A. Martin del Campo Sanchez, F. Sottile, Transactions of the American Mathematical Society 367 (2015) 4183–4206.
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C. Brooks, A. Martin del Campo Sanchez, F. Sottile, Transactions of the American Mathematical Society 367 (2015) 4183–4206.
2015 | Journal Article | IST-REx-ID: 1580 |

Knock-down of synapsin alters cell excitability and action potential waveform by potentiating BK and voltage gated Ca2 currents in Helix serotonergic neurons
O. Brenes, D.H. Vandael, E. Carbone, P. Montarolo, M. Ghirardi, Neuroscience 311 (2015) 430–443.
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O. Brenes, D.H. Vandael, E. Carbone, P. Montarolo, M. Ghirardi, Neuroscience 311 (2015) 430–443.
2015 | Journal Article | IST-REx-ID: 1582 |

Weighted straight skeletons in the plane
T. Biedl, M. Held, S. Huber, D. Kaaser, P. Palfrader, Computational Geometry: Theory and Applications 48 (2015) 120–133.
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T. Biedl, M. Held, S. Huber, D. Kaaser, P. Palfrader, Computational Geometry: Theory and Applications 48 (2015) 120–133.
2015 | Journal Article | IST-REx-ID: 1583 |

A simple algorithm for computing positively weighted straight skeletons of monotone polygons
T. Biedl, M. Held, S. Huber, D. Kaaser, P. Palfrader, Information Processing Letters 115 (2015) 243–247.
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T. Biedl, M. Held, S. Huber, D. Kaaser, P. Palfrader, Information Processing Letters 115 (2015) 243–247.
2015 | Journal Article | IST-REx-ID: 1584 |

Reprint of: Weighted straight skeletons in the plane
T. Biedl, M. Held, S. Huber, D. Kaaser, P. Palfrader, Computational Geometry: Theory and Applications 48 (2015) 429–442.
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T. Biedl, M. Held, S. Huber, D. Kaaser, P. Palfrader, Computational Geometry: Theory and Applications 48 (2015) 429–442.
2015 | Journal Article | IST-REx-ID: 1585
Asymptotic mutual information statistics of MIMO channels and CLT of sample covariance matrices
Z. Bao, G. Pan, W. Zhou, IEEE Transactions on Information Theory 61 (2015) 3413–3426.
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| DOI
Z. Bao, G. Pan, W. Zhou, IEEE Transactions on Information Theory 61 (2015) 3413–3426.
2015 | Journal Article | IST-REx-ID: 1586
Metabolic engineering of cyanobacteria for the synthesis of commodity products
A. Angermayr, A. Gorchs, K. Hellingwerf, Trends in Biotechnology 33 (2015) 352–361.
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| DOI
A. Angermayr, A. Gorchs, K. Hellingwerf, Trends in Biotechnology 33 (2015) 352–361.
2015 | Journal Article | IST-REx-ID: 1587 |

Quantum interference shifts in laser spectroscopy with elliptical polarization
P. Amaro, F. Fratini, L. Safari, A. Antognini, P. Indelicato, R. Pohl, J. Santos, Physical Review A - Atomic, Molecular, and Optical Physics 92 (2015).
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| arXiv
P. Amaro, F. Fratini, L. Safari, A. Antognini, P. Indelicato, R. Pohl, J. Santos, Physical Review A - Atomic, Molecular, and Optical Physics 92 (2015).
2015 | Journal Article | IST-REx-ID: 1588
Ring-bursting behavior en route to turbulence in narrow-gap Taylor-Couette flows
S. Altmeyer, Y. Do, Y. Lai, Physical Review E 92 (2015).
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| DOI
S. Altmeyer, Y. Do, Y. Lai, Physical Review E 92 (2015).
2015 | Journal Article | IST-REx-ID: 1589 |

Magnetic field induced flow pattern reversal in a ferrofluidic Taylor-Couette system
S. Altmeyer, Y. Do, Y. Lai, Scientific Reports 5 (2015).
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S. Altmeyer, Y. Do, Y. Lai, Scientific Reports 5 (2015).
2015 | Book Chapter | IST-REx-ID: 1590 |

Representing directed trees as straight skeletons
O. Aichholzer, T. Biedl, T. Hackl, M. Held, S. Huber, P. Palfrader, B. Vogtenhuber, in:, Graph Drawing and Network Visualization, Springer Nature, 2015, pp. 335–347.
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O. Aichholzer, T. Biedl, T. Hackl, M. Held, S. Huber, P. Palfrader, B. Vogtenhuber, in:, Graph Drawing and Network Visualization, Springer Nature, 2015, pp. 335–347.
2015 | Journal Article | IST-REx-ID: 1591 |

PIN-dependent auxin transport: Action, regulation, and evolution
M. Adamowski, J. Friml, Plant Cell 27 (2015) 20–32.
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| PubMed | Europe PMC
M. Adamowski, J. Friml, Plant Cell 27 (2015) 20–32.
2015 | Journal Article | IST-REx-ID: 1593 |

Strategies of seedlings to overcome their sessile nature: Auxin in mobility control
P. Žádníková, D. Smet, Q. Zhu, D. Van Der Straeten, E. Benková, Frontiers in Plant Science 6 (2015).
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P. Žádníková, D. Smet, Q. Zhu, D. Van Der Straeten, E. Benková, Frontiers in Plant Science 6 (2015).
2015 | Conference Paper | IST-REx-ID: 1594
Controller synthesis for MDPs and frequency LTL\GU
V. Forejt, J. Krčál, J. Kretinsky, in:, Springer, 2015, pp. 162–177.
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V. Forejt, J. Krčál, J. Kretinsky, in:, Springer, 2015, pp. 162–177.
2015 | Conference Paper | IST-REx-ID: 1595 |

Hanani-Tutte for radial planarity
R. Fulek, M. Pelsmajer, M. Schaefer, in:, Springer, 2015, pp. 99–110.
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R. Fulek, M. Pelsmajer, M. Schaefer, in:, Springer, 2015, pp. 99–110.
2015 | Book Chapter | IST-REx-ID: 1596 |

Vertical visibility among parallel polygons in three dimensions
R. Fulek, R. Radoičić, in:, Graph Drawing and Network Visualization, Springer Nature, 2015, pp. 373–379.
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R. Fulek, R. Radoičić, in:, Graph Drawing and Network Visualization, Springer Nature, 2015, pp. 373–379.
2015 | Journal Article | IST-REx-ID: 1598 |

Average case analysis of the classical algorithm for Markov decision processes with Büchi objectives
K. Chatterjee, M. Joglekar, N. Shah, Theoretical Computer Science 573 (2015) 71–89.
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| arXiv
K. Chatterjee, M. Joglekar, N. Shah, Theoretical Computer Science 573 (2015) 71–89.
2015 | Conference Paper | IST-REx-ID: 1601 |

The Hanoi omega-automata format
T. Babiak, F. Blahoudek, A. Duret Lutz, J. Klein, J. Kretinsky, D. Mueller, D. Parker, J. Strejček, in:, Springer, 2015, pp. 479–486.
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T. Babiak, F. Blahoudek, A. Duret Lutz, J. Klein, J. Kretinsky, D. Mueller, D. Parker, J. Strejček, in:, Springer, 2015, pp. 479–486.
2015 | Journal Article | IST-REx-ID: 1602 |

Faster algorithms for algebraic path properties in recursive state machines with constant treewidth
K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, P. Goyal, ACM SIGPLAN Notices 50 (2015) 97–109.
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| arXiv
K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, P. Goyal, ACM SIGPLAN Notices 50 (2015) 97–109.
2015 | Conference Paper | IST-REx-ID: 1603 |

Counterexample explanation by learning small strategies in Markov decision processes
T. Brázdil, K. Chatterjee, M. Chmelik, A. Fellner, J. Kretinsky, in:, Springer, 2015, pp. 158–177.
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T. Brázdil, K. Chatterjee, M. Chmelik, A. Fellner, J. Kretinsky, in:, Springer, 2015, pp. 158–177.
2015 | Journal Article | IST-REx-ID: 1604
Quantitative interprocedural analysis
K. Chatterjee, A. Pavlogiannis, Y. Velner, Proceedings of the 42nd Annual ACM SIGPLAN-SIGACT 50 (2015) 539–551.
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K. Chatterjee, A. Pavlogiannis, Y. Velner, Proceedings of the 42nd Annual ACM SIGPLAN-SIGACT 50 (2015) 539–551.
2015 | Conference Paper | IST-REx-ID: 1605 |

Abstraction-based parameter synthesis for multiaffine systems
S. Bogomolov, C. Schilling, E. Bartocci, G. Batt, H. Kong, R. Grosu, in:, Springer, 2015, pp. 19–35.
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S. Bogomolov, C. Schilling, E. Bartocci, G. Batt, H. Kong, R. Grosu, in:, Springer, 2015, pp. 19–35.
2015 | Conference Paper | IST-REx-ID: 1606
Runtime verification for hybrid analysis tools
L. Nguyen, C. Schilling, S. Bogomolov, T. Johnson, in:, 6th International Conference, Springer Nature, 2015, pp. 281–286.
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L. Nguyen, C. Schilling, S. Bogomolov, T. Johnson, in:, 6th International Conference, Springer Nature, 2015, pp. 281–286.
2015 | Conference Paper | IST-REx-ID: 1607 |

Faster algorithms for quantitative verification in constant treewidth graphs
K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, in:, Springer, 2015, pp. 140–157.
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K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, in:, Springer, 2015, pp. 140–157.
2015 | Conference Paper | IST-REx-ID: 1609 |

The complexity of synthesis from probabilistic components
K. Chatterjee, L. Doyen, M. Vardi, in:, 42nd International Colloquium, Springer Nature, 2015, pp. 108–120.
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K. Chatterjee, L. Doyen, M. Vardi, in:, 42nd International Colloquium, Springer Nature, 2015, pp. 108–120.
2015 | Conference Paper | IST-REx-ID: 1610 |

Edit distance for pushdown automata
K. Chatterjee, T.A. Henzinger, R. Ibsen-Jensen, J. Otop, in:, 42nd International Colloquium, Springer Nature, 2015, pp. 121–133.
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| arXiv
K. Chatterjee, T.A. Henzinger, R. Ibsen-Jensen, J. Otop, in:, 42nd International Colloquium, Springer Nature, 2015, pp. 121–133.
2015 | Journal Article | IST-REx-ID: 1611 |

Construction of a robust and sensitive arginine biosensor through ancestral protein reconstruction
J. Whitfield, W. Zhang, M. Herde, B. Clifton, J. Radziejewski, H.L. Janovjak, C. Henneberger, C. Jackson, Protein Science 24 (2015) 1412–1422.
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J. Whitfield, W. Zhang, M. Herde, B. Clifton, J. Radziejewski, H.L. Janovjak, C. Henneberger, C. Jackson, Protein Science 24 (2015) 1412–1422.
2015 | Journal Article | IST-REx-ID: 1614 |

Strength and duration of perisomatic GABAergic inhibition depend on distance between synaptically connected cells
M. Strüber, P.M. Jonas, M. Bartos, PNAS 112 (2015) 1220–1225.
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| PubMed | Europe PMC
M. Strüber, P.M. Jonas, M. Bartos, PNAS 112 (2015) 1220–1225.
2015 | Journal Article | IST-REx-ID: 1615 |

Perturbed hippocampal synaptic inhibition and γ-oscillations in a neuroligin-4 knockout mouse model of autism
M. Hammer, D. Krueger Burg, L. Tuffy, B. Cooper, H. Taschenberger, S. Goswami, H. Ehrenreich, P.M. Jonas, F. Varoqueaux, J. Rhee, N. Brose, Cell Reports 13 (2015) 516–523.
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M. Hammer, D. Krueger Burg, L. Tuffy, B. Cooper, H. Taschenberger, S. Goswami, H. Ehrenreich, P.M. Jonas, F. Varoqueaux, J. Rhee, N. Brose, Cell Reports 13 (2015) 516–523.
2015 | Journal Article | IST-REx-ID: 1618 |

Solution structure of CCL19 and identification of overlapping CCR7 and PSGL-1 binding sites
Veldkamp C, Kiermaier E, Gabel Eissens S, Gillitzer M, Lippner D, Disilvio F, Mueller C, Wantuch P, Chaffee G, Famiglietti M, Zgoba D, Bailey A, Bah Y, Engebretson S, Graupner D, Lackner E, Larosa V, Medeiros T, Olson M, Phillips A, Pyles H, Richard A, Schoeller S, Touzeau B, Williams L, Sixt MK, Peterson F. 2015. Solution structure of CCL19 and identification of overlapping CCR7 and PSGL-1 binding sites. Biochemistry. 54(27), 4163–4166.
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Veldkamp C, Kiermaier E, Gabel Eissens S, Gillitzer M, Lippner D, Disilvio F, Mueller C, Wantuch P, Chaffee G, Famiglietti M, Zgoba D, Bailey A, Bah Y, Engebretson S, Graupner D, Lackner E, Larosa V, Medeiros T, Olson M, Phillips A, Pyles H, Richard A, Schoeller S, Touzeau B, Williams L, Sixt MK, Peterson F. 2015. Solution structure of CCL19 and identification of overlapping CCR7 and PSGL-1 binding sites. Biochemistry. 54(27), 4163–4166.
2015 | Journal Article | IST-REx-ID: 1623 |

Single-cell screening of photosynthetic growth and lactate production by cyanobacteria
P. Hammar, A. Angermayr, S. Sjostrom, J. Van Der Meer, K. Hellingwerf, E. Hudson, H. Joensson, Biotechnology for Biofuels 8 (2015).
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P. Hammar, A. Angermayr, S. Sjostrom, J. Van Der Meer, K. Hellingwerf, E. Hudson, H. Joensson, Biotechnology for Biofuels 8 (2015).
2015 | Journal Article | IST-REx-ID: 1624 |

Cellular cooperation with shift updating and repulsion
A. Pavlogiannis, K. Chatterjee, B. Adlam, M. Nowak, Scientific Reports 5 (2015).
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A. Pavlogiannis, K. Chatterjee, B. Adlam, M. Nowak, Scientific Reports 5 (2015).
2015 | Conference Paper | IST-REx-ID: 1625
Detailed spatio-temporal reconstruction of eyelids
A. Bermano, T. Beeler, Y. Kozlov, D. Bradley, B. Bickel, M. Gross, in:, ACM, 2015.
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A. Bermano, T. Beeler, Y. Kozlov, D. Bradley, B. Bickel, M. Gross, in:, ACM, 2015.
2015 | Conference Paper | IST-REx-ID: 1626
OmniAD: Data-driven omni-directional aerodynamics
T. Martin, N. Umetani, B. Bickel, in:, ACM, 2015.
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T. Martin, N. Umetani, B. Bickel, in:, ACM, 2015.
2015 | Conference Paper | IST-REx-ID: 1627
Design and fabrication of flexible rod meshes
J. Pérez, B. Thomaszewski, S. Coros, B. Bickel, J. Canabal, R. Sumner, M. Otaduy, in:, ACM, 2015.
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J. Pérez, B. Thomaszewski, S. Coros, B. Bickel, J. Canabal, R. Sumner, M. Otaduy, in:, ACM, 2015.
2015 | Conference Paper | IST-REx-ID: 1628 |

Microstructures to control elasticity in 3D printing
C. Schumacher, B. Bickel, J. Rys, S. Marschner, C. Daraio, M. Gross, in:, ACM, 2015.
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| Download Published Version (ext.)
C. Schumacher, B. Bickel, J. Rys, S. Marschner, C. Daraio, M. Gross, in:, ACM, 2015.
2015 | Conference Paper | IST-REx-ID: 1630 |

Learning shape placements by example
P. Guerrero, S. Jeschke, M. Wimmer, P. Wonka, in:, ACM, 2015.
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| DOI
P. Guerrero, S. Jeschke, M. Wimmer, P. Wonka, in:, ACM, 2015.
2015 | Conference Paper | IST-REx-ID: 1632 |

A stream function solver for liquid simulations
R. Ando, N. Thuerey, C.J. Wojtan, in:, ACM, 2015.
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R. Ando, N. Thuerey, C.J. Wojtan, in:, ACM, 2015.
2015 | Conference Paper | IST-REx-ID: 1633 |

High-resolution brittle fracture simulation with boundary elements
D. Hahn, C.J. Wojtan, in:, ACM, 2015.
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D. Hahn, C.J. Wojtan, in:, ACM, 2015.
2015 | Conference Paper | IST-REx-ID: 1634 |

Double bubbles sans toil and trouble: discrete circulation-preserving vortex sheets for soap films and foams
F. Da, C. Batty, C.J. Wojtan, E. Grinspun, in:, ACM, 2015.
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F. Da, C. Batty, C.J. Wojtan, E. Grinspun, in:, ACM, 2015.
2015 | Journal Article | IST-REx-ID: 1635 |

Discrete Ricci curvature bounds for Bernoulli-Laplace and random transposition models
M. Erbar, J. Maas, P. Tetali, Annales de La Faculté Des Sciences de Toulouse 24 (2015) 781–800.
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M. Erbar, J. Maas, P. Tetali, Annales de La Faculté Des Sciences de Toulouse 24 (2015) 781–800.
2015 | Conference Paper | IST-REx-ID: 1636 |

Effectiveness of structural restrictions for hybrid CSPs
V. Kolmogorov, M. Rolinek, R. Takhanov, in:, 26th International Symposium, Springer Nature, 2015, pp. 566–577.
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| arXiv
V. Kolmogorov, M. Rolinek, R. Takhanov, in:, 26th International Symposium, Springer Nature, 2015, pp. 566–577.
2015 | Conference Paper | IST-REx-ID: 1637 |

The complexity of general-valued CSPs
V. Kolmogorov, A. Krokhin, M. Rolinek, in:, IEEE, 2015, pp. 1246–1258.
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V. Kolmogorov, A. Krokhin, M. Rolinek, in:, IEEE, 2015, pp. 1246–1258.
2015 | Journal Article | IST-REx-ID: 1638
A giant molecular proton pump: structure and mechanism of respiratory complex I
L.A. Sazanov, Nature Reviews Molecular Cell Biology 16 (2015) 375–388.
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L.A. Sazanov, Nature Reviews Molecular Cell Biology 16 (2015) 375–388.
2015 | Journal Article | IST-REx-ID: 1639 |

A generalized model for optimal transport of images including dissipation and density modulation
J. Maas, M. Rumpf, C. Schönlieb, S. Simon, ESAIM: Mathematical Modelling and Numerical Analysis 49 (2015) 1745–1769.
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| arXiv
J. Maas, M. Rumpf, C. Schönlieb, S. Simon, ESAIM: Mathematical Modelling and Numerical Analysis 49 (2015) 1745–1769.
2015 | Journal Article | IST-REx-ID: 1640 |

Cytokinin response factors regulate PIN-FORMED auxin transporters
M. Šimášková, J. O’Brien, M. Khan-Djamei, G. Van Noorden, K. Ötvös, A. Vieten, I. De Clercq, J. Van Haperen, C. Cuesta, K. Hoyerová, S. Vanneste, P. Marhavý, K.T. Wabnik, F. Van Breusegem, M. Nowack, A. Murphy, J. Friml, D. Weijers, T. Beeckman, E. Benková, Nature Communications 6 (2015).
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M. Šimášková, J. O’Brien, M. Khan-Djamei, G. Van Noorden, K. Ötvös, A. Vieten, I. De Clercq, J. Van Haperen, C. Cuesta, K. Hoyerová, S. Vanneste, P. Marhavý, K.T. Wabnik, F. Van Breusegem, M. Nowack, A. Murphy, J. Friml, D. Weijers, T. Beeckman, E. Benková, Nature Communications 6 (2015).
2015 | Journal Article | IST-REx-ID: 1642 |

Clustered planarity testing revisited
R. Fulek, J. Kynčl, I. Malinovič, D. Pálvölgyi, Electronic Journal of Combinatorics 22 (2015).
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| arXiv
R. Fulek, J. Kynčl, I. Malinovič, D. Pálvölgyi, Electronic Journal of Combinatorics 22 (2015).
2015 | Conference Paper | IST-REx-ID: 1644 |

Query-complexity amplification for random oracles
G. Demay, P. Gazi, U. Maurer, B. Tackmann, in:, Springer, 2015, pp. 159–180.
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G. Demay, P. Gazi, U. Maurer, B. Tackmann, in:, Springer, 2015, pp. 159–180.
2015 | Conference Paper | IST-REx-ID: 1645
Secret-key cryptography from ideal primitives: A systematic verview
P. Gazi, S. Tessaro, in:, 2015 IEEE Information Theory Workshop, IEEE, 2015.
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| DOI
P. Gazi, S. Tessaro, in:, 2015 IEEE Information Theory Workshop, IEEE, 2015.
2015 | Conference Paper | IST-REx-ID: 1646 |

Key-homomorphic constrained pseudorandom functions
A. Banerjee, G. Fuchsbauer, C. Peikert, K.Z. Pietrzak, S. Stevens, in:, 12th Theory of Cryptography Conference, Springer Nature, 2015, pp. 31–60.
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A. Banerjee, G. Fuchsbauer, C. Peikert, K.Z. Pietrzak, S. Stevens, in:, 12th Theory of Cryptography Conference, Springer Nature, 2015, pp. 31–60.
2015 | Conference Paper | IST-REx-ID: 1647 |

Practical round-optimal blind signatures in the standard model
G. Fuchsbauer, C. Hanser, D. Slamanig, in:, Springer, 2015, pp. 233–253.
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G. Fuchsbauer, C. Hanser, D. Slamanig, in:, Springer, 2015, pp. 233–253.
2015 | Conference Paper | IST-REx-ID: 1648 |

A quasipolynomial reduction for generalized selective decryption on trees
G. Fuchsbauer, Z. Jafargholi, K.Z. Pietrzak, in:, Springer, 2015, pp. 601–620.
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G. Fuchsbauer, Z. Jafargholi, K.Z. Pietrzak, in:, Springer, 2015, pp. 601–620.
2015 | Conference Paper | IST-REx-ID: 1649 |

Efficient zero-knowledge proofs for commitments from learning with errors over rings
F. Benhamouda, S. Krenn, V. Lyubashevsky, K.Z. Pietrzak, 9326 (2015) 305–325.
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F. Benhamouda, S. Krenn, V. Lyubashevsky, K.Z. Pietrzak, 9326 (2015) 305–325.
2015 | Conference Paper | IST-REx-ID: 1650 |

Condensed unpredictability
M. Skórski, A. Golovnev, K.Z. Pietrzak, in:, Springer, 2015, pp. 1046–1057.
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M. Skórski, A. Golovnev, K.Z. Pietrzak, in:, Springer, 2015, pp. 1046–1057.
2015 | Conference Paper | IST-REx-ID: 1652 |

High parallel complexity graphs and memory-hard functions
J.F. Alwen, V. Serbinenko, in:, Proceedings of the 47th Annual ACM Symposium on Theory of Computing, ACM, 2015, pp. 595–603.
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J.F. Alwen, V. Serbinenko, in:, Proceedings of the 47th Annual ACM Symposium on Theory of Computing, ACM, 2015, pp. 595–603.
2015 | Conference Paper | IST-REx-ID: 1654 |

Generic security of NMAC and HMAC with input whitening
P. Gazi, K.Z. Pietrzak, S. Tessaro, 9453 (2015) 85–109.
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P. Gazi, K.Z. Pietrzak, S. Tessaro, 9453 (2015) 85–109.
2015 | Journal Article | IST-REx-ID: 1655 |

Quantifying emergent behavior of autonomous robots
G.S. Martius, E. Olbrich, Entropy 17 (2015) 7266–7297.
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G.S. Martius, E. Olbrich, Entropy 17 (2015) 7266–7297.
2015 | Conference Paper | IST-REx-ID: 1656
Nested weighted automata
K. Chatterjee, T.A. Henzinger, J. Otop, in:, Proceedings - Symposium on Logic in Computer Science, IEEE, 2015.
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K. Chatterjee, T.A. Henzinger, J. Otop, in:, Proceedings - Symposium on Logic in Computer Science, IEEE, 2015.
2015 | Conference Paper | IST-REx-ID: 1657
Unifying two views on multiple mean-payoff objectives in Markov decision processes
K. Chatterjee, Z. Komárková, J. Kretinsky, (2015) 244–256.
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K. Chatterjee, Z. Komárková, J. Kretinsky, (2015) 244–256.
2015 | Conference Paper | IST-REx-ID: 1658
Adaptive moment closure for parameter inference of biochemical reaction networks
S. Bogomolov, T.A. Henzinger, A. Podelski, J. Ruess, C. Schilling, 9308 (2015) 77–89.
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S. Bogomolov, T.A. Henzinger, A. Podelski, J. Ruess, C. Schilling, 9308 (2015) 77–89.
2015 | Conference Paper | IST-REx-ID: 1659 |

The target discounted-sum problem
U. Boker, T.A. Henzinger, J. Otop, in:, LICS, IEEE, 2015, pp. 750–761.
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U. Boker, T.A. Henzinger, J. Otop, in:, LICS, IEEE, 2015, pp. 750–761.
2015 | Conference Paper | IST-REx-ID: 1660 |

Long-run average behaviour of probabilistic vector addition systems
T. Brázdil, S. Kiefer, A. Kučera, P. Novotný, in:, IEEE, 2015, pp. 44–55.
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T. Brázdil, S. Kiefer, A. Kučera, P. Novotný, in:, IEEE, 2015, pp. 44–55.
2015 | Journal Article | IST-REx-ID: 1663
Complex regulation of CREB-binding protein by homeodomain-interacting protein kinase 2
K. Kovács, M. Steinmann, O. Halfon, P. Magistretti, J. Cardinaux, Cellular Signalling 27 (2015) 2252–2260.
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K. Kovács, M. Steinmann, O. Halfon, P. Magistretti, J. Cardinaux, Cellular Signalling 27 (2015) 2252–2260.
2015 | Journal Article | IST-REx-ID: 1664 |

The rise of fully turbulent flow
D. Barkley, B. Song, M. Vasudevan, G.M. Lemoult, M. Avila, B. Hof, Nature 526 (2015) 550–553.
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D. Barkley, B. Song, M. Vasudevan, G.M. Lemoult, M. Avila, B. Hof, Nature 526 (2015) 550–553.
2015 | Journal Article | IST-REx-ID: 1665 |

Mutations driving CLL and their evolution in progression and relapse
Landau D, Tausch E, Taylor Weiner A, Stewart C, Reiter J, Bahlo J, Kluth S, Božić I, Lawrence M, Böttcher S, Carter S, Cibulskis K, Mertens D, Sougnez C, Rosenberg M, Hess J, Edelmann J, Kless S, Kneba M, Ritgen M, Fink A, Fischer K, Gabriel S, Lander E, Nowak M, Döhner H, Hallek M, Neuberg D, Getz G, Stilgenbauer S, Wu C. 2015. Mutations driving CLL and their evolution in progression and relapse. Nature. 526(7574), 525–530.
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| PubMed | Europe PMC
Landau D, Tausch E, Taylor Weiner A, Stewart C, Reiter J, Bahlo J, Kluth S, Božić I, Lawrence M, Böttcher S, Carter S, Cibulskis K, Mertens D, Sougnez C, Rosenberg M, Hess J, Edelmann J, Kless S, Kneba M, Ritgen M, Fink A, Fischer K, Gabriel S, Lander E, Nowak M, Döhner H, Hallek M, Neuberg D, Getz G, Stilgenbauer S, Wu C. 2015. Mutations driving CLL and their evolution in progression and relapse. Nature. 526(7574), 525–530.
2015 | Journal Article | IST-REx-ID: 1666 |

Dynamics of transcription factor binding site evolution
M. Tugrul, T. Paixao, N.H. Barton, G. Tkačik, PLoS Genetics 11 (2015).
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M. Tugrul, T. Paixao, N.H. Barton, G. Tkačik, PLoS Genetics 11 (2015).
2015 | Conference Paper | IST-REx-ID: 1667 |

Optimizing performance of continuous-time stochastic systems using timeout synthesis
T. Brázdil, L. Korenčiak, J. Krčál, P. Novotný, V. Řehák, 9259 (2015) 141–159.
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T. Brázdil, L. Korenčiak, J. Krčál, P. Novotný, V. Řehák, 9259 (2015) 141–159.
2015 | Conference Paper | IST-REx-ID: 1668 |

Relaxing full-codebook security: A refined analysis of key-length extension schemes
P. Gazi, J. Lee, Y. Seurin, J. Steinberger, S. Tessaro, 9054 (2015) 319–341.
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P. Gazi, J. Lee, Y. Seurin, J. Steinberger, S. Tessaro, 9054 (2015) 319–341.
2015 | Conference Paper | IST-REx-ID: 1669 |

The chain rule for HILL pseudoentropy, revisited
K.Z. Pietrzak, M. Skórski, 9230 (2015) 81–98.
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K.Z. Pietrzak, M. Skórski, 9230 (2015) 81–98.
2015 | Conference Paper | IST-REx-ID: 1670
PDDL+ planning with hybrid automata: Foundations of translating must behavior
S. Bogomolov, D. Magazzeni, S. Minopoli, M. Wehrle, in:, AAAI Press, 2015, pp. 42–46.
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S. Bogomolov, D. Magazzeni, S. Minopoli, M. Wehrle, in:, AAAI Press, 2015, pp. 42–46.
2015 | Conference Paper | IST-REx-ID: 1671 |

The exact PRF security of truncation: Tight bounds for keyed sponges and truncated CBC
P. Gazi, K.Z. Pietrzak, S. Tessaro, in:, Springer, 2015, pp. 368–387.
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P. Gazi, K.Z. Pietrzak, S. Tessaro, in:, Springer, 2015, pp. 368–387.
2015 | Journal Article | IST-REx-ID: 1673 |

Amplifiers of selection
B. Adlam, K. Chatterjee, M. Nowak, Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences 471 (2015).
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B. Adlam, K. Chatterjee, M. Nowak, Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences 471 (2015).
2015 | Journal Article | IST-REx-ID: 1674 |

Edge universality for deformed Wigner matrices
J. Lee, K. Schnelli, Reviews in Mathematical Physics 27 (2015).
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J. Lee, K. Schnelli, Reviews in Mathematical Physics 27 (2015).
2015 | Conference Paper | IST-REx-ID: 1675
Proofs of space
S. Dziembowski, S. Faust, V. Kolmogorov, K.Z. Pietrzak, 9216 (2015) 585–605.
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S. Dziembowski, S. Faust, V. Kolmogorov, K.Z. Pietrzak, 9216 (2015) 585–605.
2015 | Journal Article | IST-REx-ID: 1676
Editorial overview: Cell adhesion and migration
M.K. Sixt, E. Raz, Current Opinion in Cell Biology 36 (2015) 4–6.
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M.K. Sixt, E. Raz, Current Opinion in Cell Biology 36 (2015) 4–6.
2015 | Journal Article | IST-REx-ID: 1677 |

The local semicircle law for random matrices with a fourfold symmetry
J. Alt, Journal of Mathematical Physics 56 (2015).
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J. Alt, Journal of Mathematical Physics 56 (2015).
2015 | Journal Article | IST-REx-ID: 1678 |

Light-assisted small-molecule screening against protein kinases
Á. Inglés Prieto, E. Gschaider-Reichhart, M. Muellner, M. Nowak, S. Nijman, M. Grusch, H.L. Janovjak, Nature Chemical Biology 11 (2015) 952–954.
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Á. Inglés Prieto, E. Gschaider-Reichhart, M. Muellner, M. Nowak, S. Nijman, M. Grusch, H.L. Janovjak, Nature Chemical Biology 11 (2015) 952–954.
2015 | Journal Article | IST-REx-ID: 1679 |

Taylor's Forest
G.M. Lemoult, P. Maier, B. Hof, Physics of Fluids 27 (2015).
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G.M. Lemoult, P. Maier, B. Hof, Physics of Fluids 27 (2015).
2015 | Journal Article | IST-REx-ID: 1680
On the decidability of elementary modal logics
J. Michaliszyn, J. Otop, E. Kieroňski, ACM Transactions on Computational Logic 17 (2015).
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J. Michaliszyn, J. Otop, E. Kieroňski, ACM Transactions on Computational Logic 17 (2015).
2015 | Journal Article | IST-REx-ID: 1681 |

Evolution of decisions in population games with sequentially searching individuals
T. Priklopil, K. Chatterjee, Games 6 (2015) 413–437.
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T. Priklopil, K. Chatterjee, Games 6 (2015) 413–437.
2015 | Journal Article | IST-REx-ID: 1682 |

Robust satisfiability of systems of equations
P. Franek, M. Krcál, Journal of the ACM 62 (2015).
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P. Franek, M. Krcál, Journal of the ACM 62 (2015).
2015 | Journal Article | IST-REx-ID: 1683
Gaining mass: The structure of respiratory complex I-from bacterial towards mitochondrial versions
J.A. Letts, L.A. Sazanov, Current Opinion in Structural Biology 33 (2015) 135–145.
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J.A. Letts, L.A. Sazanov, Current Opinion in Structural Biology 33 (2015) 135–145.
2015 | Journal Article | IST-REx-ID: 1684 |

Numerous transitions of sex chromosomes in Diptera
B. Vicoso, D. Bachtrog, PLoS Biology 13 (2015).
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B. Vicoso, D. Bachtrog, PLoS Biology 13 (2015).
2015 | Conference Paper | IST-REx-ID: 1685 |

A fixed parameter tractable approximation scheme for the optimal cut graph of a surface
V. Cohen Addad, A.N. de Mesmay, in:, Springer, 2015, pp. 386–398.
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V. Cohen Addad, A.N. de Mesmay, in:, Springer, 2015, pp. 386–398.
2015 | Journal Article | IST-REx-ID: 1686
Fragmented communication between immune cells: Neutrophils blaze a trail with migratory cues for T cells to follow to sites of infection
E. Kiermaier, M.K. Sixt, Science 349 (2015) 1055–1056.
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E. Kiermaier, M.K. Sixt, Science 349 (2015) 1055–1056.
2015 | Journal Article | IST-REx-ID: 1687 |

Navigating in tissue mazes: Chemoattractant interpretation in complex environments
M. Sarris, M.K. Sixt, Current Opinion in Cell Biology 36 (2015) 93–102.
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M. Sarris, M.K. Sixt, Current Opinion in Cell Biology 36 (2015) 93–102.
2015 | Journal Article | IST-REx-ID: 1688 |

Bounds for Pach's selection theorem and for the minimum solid angle in a simplex
R. Karasev, J. Kynčl, P. Paták, Z. Patakova, M. Tancer, Discrete & Computational Geometry 54 (2015) 610–636.
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R. Karasev, J. Kynčl, P. Paták, Z. Patakova, M. Tancer, Discrete & Computational Geometry 54 (2015) 610–636.
2015 | Conference Paper | IST-REx-ID: 1689 |

Temporal logic control for stochastic linear systems using abstraction refinement of probabilistic games
M. Svoreňová, J. Kretinsky, M. Chmelik, K. Chatterjee, I. Cěrná, C. Belta, in:, Proceedings of the 18th International Conference on Hybrid Systems: Computation and Control, ACM, 2015, pp. 259–268.
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M. Svoreňová, J. Kretinsky, M. Chmelik, K. Chatterjee, I. Cěrná, C. Belta, in:, Proceedings of the 18th International Conference on Hybrid Systems: Computation and Control, ACM, 2015, pp. 259–268.
2015 | Conference Paper | IST-REx-ID: 1690
HYST: A source transformation and translation tool for hybrid automaton models
S. Bak, S. Bogomolov, T. Johnson, in:, Springer, 2015, pp. 128–133.
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S. Bak, S. Bogomolov, T. Johnson, in:, Springer, 2015, pp. 128–133.
2015 | Conference Paper | IST-REx-ID: 1691
Temporal logic motion planning using POMDPs with parity objectives: Case study paper
M. Svoreňová, M. Chmelik, K. Leahy, H. Eniser, K. Chatterjee, I. Cěrná, C. Belta, in:, Proceedings of the 18th International Conference on Hybrid Systems: Computation and Control, ACM, 2015, pp. 233–238.
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M. Svoreňová, M. Chmelik, K. Leahy, H. Eniser, K. Chatterjee, I. Cěrná, C. Belta, in:, Proceedings of the 18th International Conference on Hybrid Systems: Computation and Control, ACM, 2015, pp. 233–238.
2015 | Conference Paper | IST-REx-ID: 1692
Eliminating spurious transitions in reachability with support functions
G. Frehse, S. Bogomolov, M. Greitschus, T. Strump, A. Podelski, in:, Proceedings of the 18th International Conference on Hybrid Systems: Computation and Control, ACM, 2015, pp. 149–158.
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G. Frehse, S. Bogomolov, M. Greitschus, T. Strump, A. Podelski, in:, Proceedings of the 18th International Conference on Hybrid Systems: Computation and Control, ACM, 2015, pp. 149–158.
2015 | Journal Article | IST-REx-ID: 1693 |

Quantum interference effects in laser spectroscopy of muonic hydrogen, deuterium, and helium-3
P. Amaro, B. Franke, J. Krauth, M. Diepold, F. Fratini, L. Safari, J. Machado, A. Antognini, F. Kottmann, P. Indelicato, R. Pohl, J. Santos, Physical Review A 92 (2015).
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P. Amaro, B. Franke, J. Krauth, M. Diepold, F. Fratini, L. Safari, J. Machado, A. Antognini, F. Kottmann, P. Indelicato, R. Pohl, J. Santos, Physical Review A 92 (2015).
2015 | Journal Article | IST-REx-ID: 1694
Quantitative temporal simulation and refinement distances for timed systems
K. Chatterjee, V. Prabhu, IEEE Transactions on Automatic Control 60 (2015) 2291–2306.
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K. Chatterjee, V. Prabhu, IEEE Transactions on Automatic Control 60 (2015) 2291–2306.
2015 | Journal Article | IST-REx-ID: 1695 |

Evaluation techniques for Gutzwiller wave functions in finite dimensions
J. Kaczmarczyk, T. Schickling, J. Bünemann, Physica Status Solidi (B): Basic Solid State Physics 252 (2015) 2059–2071.
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J. Kaczmarczyk, T. Schickling, J. Bünemann, Physica Status Solidi (B): Basic Solid State Physics 252 (2015) 2059–2071.
2015 | Journal Article | IST-REx-ID: 1696 |

Gutzwiller wave function solution for Anderson lattice model: Emerging universal regimes of heavy quasiparticle states
M. Wysokiński, J. Kaczmarczyk, J. Spałek, Physical Review B 92 (2015).
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M. Wysokiński, J. Kaczmarczyk, J. Spałek, Physical Review B 92 (2015).
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