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517 Publications
2019 | Journal Article | IST-REx-ID: 301 |

A Feynman–Kac formula for stochastic Dirichlet problems
M. Gerencser, I. Gyöngy, Stochastic Processes and Their Applications 129 (2019) 995–1012.
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M. Gerencser, I. Gyöngy, Stochastic Processes and Their Applications 129 (2019) 995–1012.
2019 | Journal Article | IST-REx-ID: 319 |

Singular SPDEs in domains with boundaries
M. Gerencser, M. Hairer, Probability Theory and Related Fields 173 (2019) 697–758.
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M. Gerencser, M. Hairer, Probability Theory and Related Fields 173 (2019) 697–758.
2019 | Preprint | IST-REx-ID: 7782 |

Maximum likelihood method quantifies the overall contribution of gene-environment interaction to continuous traits: An application to complex traits in the UK Biobank
J. Sulc, N. Mounier, F. Günther, T. Winkler, A.R. Wood, T.M. Frayling, I.M. Heid, M.R. Robinson, Z. Kutalik, BioRxiv (2019).
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J. Sulc, N. Mounier, F. Günther, T. Winkler, A.R. Wood, T.M. Frayling, I.M. Heid, M.R. Robinson, Z. Kutalik, BioRxiv (2019).
2019 | Preprint | IST-REx-ID: 7950 |

Token swapping on trees
A. Biniaz, K. Jain, A. Lubiw, Z. Masárová, T. Miltzow, D. Mondal, A.M. Naredla, J. Tkadlec, A. Turcotte, ArXiv (n.d.).
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A. Biniaz, K. Jain, A. Lubiw, Z. Masárová, T. Miltzow, D. Mondal, A.M. Naredla, J. Tkadlec, A. Turcotte, ArXiv (n.d.).
2019 | Journal Article | IST-REx-ID: 8 |

The Repo homeodomain transcription factor suppresses hematopoiesis in Drosophila and preserves the glial fate
G. Trébuchet, P.B. Cattenoz, J. Zsámboki, D. Mazaud, D.E. Siekhaus, M. Fanto, A. Giangrande, Journal of Neuroscience 39 (2019) 238–255.
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G. Trébuchet, P.B. Cattenoz, J. Zsámboki, D. Mazaud, D.E. Siekhaus, M. Fanto, A. Giangrande, Journal of Neuroscience 39 (2019) 238–255.
2019 | Journal Article | IST-REx-ID: 80 |

Bose–Einstein condensation in a dilute, trapped gas at positive temperature
A. Deuchert, R. Seiringer, J. Yngvason, Communications in Mathematical Physics 368 (2019) 723–776.
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A. Deuchert, R. Seiringer, J. Yngvason, Communications in Mathematical Physics 368 (2019) 723–776.
2019 | Journal Article | IST-REx-ID: 8013 |

Think: Theory for Africa
C.B. Currin, P.N. Khoza, A.D. Antrobus, P.E. Latham, T.P. Vogels, J.V. Raimondo, PLOS Computational Biology 15 (2019).
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C.B. Currin, P.N. Khoza, A.D. Antrobus, P.E. Latham, T.P. Vogels, J.V. Raimondo, PLOS Computational Biology 15 (2019).
2019 | Journal Article | IST-REx-ID: 8014 |

Neural mechanisms of attending to items in working memory
S.G. Manohar, N. Zokaei, S.J. Fallon, T.P. Vogels, M. Husain, Neuroscience and Biobehavioral Reviews 101 (2019) 1–12.
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S.G. Manohar, N. Zokaei, S.J. Fallon, T.P. Vogels, M. Husain, Neuroscience and Biobehavioral Reviews 101 (2019) 1–12.
2019 | Conference Paper | IST-REx-ID: 8175 |

New edge asymptotics of skew Young diagrams via free boundaries
D. Betea, J. Bouttier, P. Nejjar, M. Vuletíc, in:, Proceedings on the 31st International Conference on Formal Power Series and Algebraic Combinatorics, Formal Power Series and Algebraic Combinatorics, 2019.
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D. Betea, J. Bouttier, P. Nejjar, M. Vuletíc, in:, Proceedings on the 31st International Conference on Formal Power Series and Algebraic Combinatorics, Formal Power Series and Algebraic Combinatorics, 2019.
2019 | Preprint | IST-REx-ID: 8184 |

Stronger counterexamples to the topological Tverberg conjecture
S. Avvakumov, R. Karasev, A. Skopenkov, ArXiv (n.d.).
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S. Avvakumov, R. Karasev, A. Skopenkov, ArXiv (n.d.).
2019 | Preprint | IST-REx-ID: 8185 |

Envy-free division using mapping degree
S. Avvakumov, R. Karasev, ArXiv (n.d.).
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S. Avvakumov, R. Karasev, ArXiv (n.d.).
2019 | Journal Article | IST-REx-ID: 8227 |

AllergoOncology: Expression platform development and functional profiling of an anti‐HER2 IgE antibody
K.M. Ilieva, J. Singer, H.J. Bax, S. Crescioli, L. Montero‐Morales, S. Mele, H.S. Sow, C. Stavraka, D.H. Josephs, J.F. Spicer, H. Steinkellner, E. Jensen‐Jarolim, A.N.J. Tutt, S.N. Karagiannis, Allergy 74 (2019) 1985–1989.
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K.M. Ilieva, J. Singer, H.J. Bax, S. Crescioli, L. Montero‐Morales, S. Mele, H.S. Sow, C. Stavraka, D.H. Josephs, J.F. Spicer, H. Steinkellner, E. Jensen‐Jarolim, A.N.J. Tutt, S.N. Karagiannis, Allergy 74 (2019) 1985–1989.
2019 | Journal Article | IST-REx-ID: 8228 |

AllergoOncology: High innate IgE levels are decisive for the survival of cancer-bearing mice
J. Singer, G. Achatz-Straussberger, A. Bentley-Lukschal, J. Singer, G. Achatz, S.N. Karagiannis, E. Jensen-Jarolim, World Allergy Organization Journal 12 (2019).
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J. Singer, G. Achatz-Straussberger, A. Bentley-Lukschal, J. Singer, G. Achatz, S.N. Karagiannis, E. Jensen-Jarolim, World Allergy Organization Journal 12 (2019).
2019 | Journal Article | IST-REx-ID: 8229 |

Immune effects of the nitrated food allergen beta-lactoglobulin in an experimental food allergy model
A.S. Ondracek, D. Heiden, G.J. Oostingh, E. Fuerst, J. Singer, C. Bergmayr, J. Rohrhofer, E. Jensen-Jarolim, A. Duschl, E. Untersmayr, Nutrients 11 (2019).
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A.S. Ondracek, D. Heiden, G.J. Oostingh, E. Fuerst, J. Singer, C. Bergmayr, J. Rohrhofer, E. Jensen-Jarolim, A. Duschl, E. Untersmayr, Nutrients 11 (2019).
2019 | Journal Article | IST-REx-ID: 8263 |

Micro-evolution of three Streptococcus species: Selection, antigenic variation, and horizontal gene inflow
P.V. Shelyakin, O. Bochkareva, A.A. Karan, M.S. Gelfand, BMC Evolutionary Biology 19 (2019).
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P.V. Shelyakin, O. Bochkareva, A.A. Karan, M.S. Gelfand, BMC Evolutionary Biology 19 (2019).
2019 | Book Chapter | IST-REx-ID: 8281
Mathematical models in population genetics
N.H. Barton, A. Etheridge, in:, D. Balding, I. Moltke, J. Marioni (Eds.), Handbook of Statistical Genomics, 4th ed., Wiley, 2019, pp. 115–144.
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N.H. Barton, A. Etheridge, in:, D. Balding, I. Moltke, J. Marioni (Eds.), Handbook of Statistical Genomics, 4th ed., Wiley, 2019, pp. 115–144.
2019 | Conference Paper | IST-REx-ID: 8296
Rethinking general-purpose decentralized computing
E.C. Alp, E. Kokoris Kogias, G. Fragkouli, B. Ford, in:, Proceedings of the Workshop on Hot Topics in Operating Systems, ACM, 2019, pp. 105–112.
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E.C. Alp, E. Kokoris Kogias, G. Fragkouli, B. Ford, in:, Proceedings of the Workshop on Hot Topics in Operating Systems, ACM, 2019, pp. 105–112.
2019 | Preprint | IST-REx-ID: 8303 |

Robust and scalable consensus for sharded distributed ledgers
E. Kokoris Kogias, Cryptology EPrint Archive (n.d.).
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E. Kokoris Kogias, Cryptology EPrint Archive (n.d.).
2019 | Preprint | IST-REx-ID: 8304 |

SoK: Communication across distributed ledgers
A. Zamyatin, M. Al-Bassam, D. Zindros, E. Kokoris Kogias, P. Moreno-Sanchez, A. Kiayias, W.J. Knottenbelt, Cryptology EPrint Archive (n.d.).
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A. Zamyatin, M. Al-Bassam, D. Zindros, E. Kokoris Kogias, P. Moreno-Sanchez, A. Kiayias, W.J. Knottenbelt, Cryptology EPrint Archive (n.d.).
2019 | Preprint | IST-REx-ID: 8305 |

Bootstrapping consensus without trusted setup: fully asynchronous distributed key generation
E. Kokoris Kogias, A. Spiegelman, D. Malkhi, I. Abraham, Cryptology EPrint Archive (n.d.).
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E. Kokoris Kogias, A. Spiegelman, D. Malkhi, I. Abraham, Cryptology EPrint Archive (n.d.).
2019 | Thesis | IST-REx-ID: 8311 |

Secure, confidential blockchains providing high throughput and low latency
E. Kokoris Kogias, Secure, Confidential Blockchains Providing High Throughput and Low Latency, École Polytechnique Fédérale de Lausanne, 2019.
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E. Kokoris Kogias, Secure, Confidential Blockchains Providing High Throughput and Low Latency, École Polytechnique Fédérale de Lausanne, 2019.
2019 | Patent | IST-REx-ID: 8313 |

Methods and systems for secure data exchange
B. Ford, L. Gasser, E. Kokoris Kogias, P. Janovic, (2019).
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B. Ford, L. Gasser, E. Kokoris Kogias, P. Janovic, (2019).
2019 | Preprint | IST-REx-ID: 8314 |

Brick: Asynchronous payment channels
G. Avarikioti, E. Kokoris Kogias, R. Wattenhofer, D. Zindros, ArXiv (n.d.).
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G. Avarikioti, E. Kokoris Kogias, R. Wattenhofer, D. Zindros, ArXiv (n.d.).
2019 | Preprint | IST-REx-ID: 8315 |

Divide and scale: Formalization of distributed ledger sharding protocols
G. Avarikioti, E. Kokoris Kogias, R. Wattenhofer, ArXiv (n.d.).
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G. Avarikioti, E. Kokoris Kogias, R. Wattenhofer, ArXiv (n.d.).
2019 | Journal Article | IST-REx-ID: 8405 |

Integrated NMR and cryo-EM atomic-resolution structure determination of a half-megadalton enzyme complex
D.F. Gauto, L.F. Estrozi, C.D. Schwieters, G. Effantin, P. Macek, R. Sounier, A.C. Sivertsen, E. Schmidt, R. Kerfah, G. Mas, J.-P. Colletier, P. Güntert, A. Favier, G. Schoehn, P. Schanda, J. Boisbouvier, Nature Communications 10 (2019).
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D.F. Gauto, L.F. Estrozi, C.D. Schwieters, G. Effantin, P. Macek, R. Sounier, A.C. Sivertsen, E. Schmidt, R. Kerfah, G. Mas, J.-P. Colletier, P. Güntert, A. Favier, G. Schoehn, P. Schanda, J. Boisbouvier, Nature Communications 10 (2019).
2019 | Journal Article | IST-REx-ID: 8406 |

Mechanism of the allosteric activation of the ClpP protease machinery by substrates and active-site inhibitors
J. Felix, K. Weinhäupl, C. Chipot, F. Dehez, A. Hessel, D.F. Gauto, C. Morlot, O. Abian, I. Gutsche, A. Velazquez-Campoy, P. Schanda, H. Fraga, Science Advances 5 (2019).
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J. Felix, K. Weinhäupl, C. Chipot, F. Dehez, A. Hessel, D.F. Gauto, C. Morlot, O. Abian, I. Gutsche, A. Velazquez-Campoy, P. Schanda, H. Fraga, Science Advances 5 (2019).
2019 | Journal Article | IST-REx-ID: 8407
Relaxing with liquids and solids – A perspective on biomolecular dynamics
P. Schanda, Journal of Magnetic Resonance 306 (2019) 180–186.
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P. Schanda, Journal of Magnetic Resonance 306 (2019) 180–186.
2019 | Journal Article | IST-REx-ID: 8408
Aromatic ring dynamics, thermal activation, and transient conformations of a 468 kDa enzyme by specific 1H–13C labeling and fast magic-angle spinning NMR
D.F. Gauto, P. Macek, A. Barducci, H. Fraga, A. Hessel, T. Terauchi, D. Gajan, Y. Miyanoiri, J. Boisbouvier, R. Lichtenecker, M. Kainosho, P. Schanda, Journal of the American Chemical Society 141 (2019) 11183–11195.
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D.F. Gauto, P. Macek, A. Barducci, H. Fraga, A. Hessel, T. Terauchi, D. Gajan, Y. Miyanoiri, J. Boisbouvier, R. Lichtenecker, M. Kainosho, P. Schanda, Journal of the American Chemical Society 141 (2019) 11183–11195.
2019 | Journal Article | IST-REx-ID: 8409
Studying intact bacterial peptidoglycan by proton-detected NMR spectroscopy at 100 kHz MAS frequency
C. Bougault, I. Ayala, W. Vollmer, J.-P. Simorre, P. Schanda, Journal of Structural Biology 206 (2019) 66–72.
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C. Bougault, I. Ayala, W. Vollmer, J.-P. Simorre, P. Schanda, Journal of Structural Biology 206 (2019) 66–72.
2019 | Journal Article | IST-REx-ID: 8410 |

NMR for Biological Systems
P. Schanda, E.Y. Chekmenev, ChemPhysChem 20 (2019) 177–177.
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P. Schanda, E.Y. Chekmenev, ChemPhysChem 20 (2019) 177–177.
2019 | Journal Article | IST-REx-ID: 8411
Microsecond protein dynamics from combined Bloch-McConnell and Near-Rotary-Resonance R1p relaxation-dispersion MAS NMR
D. Marion, D.F. Gauto, I. Ayala, K. Giandoreggio-Barranco, P. Schanda, ChemPhysChem 20 (2019) 276–284.
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D. Marion, D.F. Gauto, I. Ayala, K. Giandoreggio-Barranco, P. Schanda, ChemPhysChem 20 (2019) 276–284.
2019 | Journal Article | IST-REx-ID: 8412
Conformational dynamics in the core of human Y145Stop prion protein amyloid probed by relaxation dispersion NMR
M.D. Shannon, T. Theint, D. Mukhopadhyay, K. Surewicz, W.K. Surewicz, D. Marion, P. Schanda, C.P. Jaroniec, ChemPhysChem 20 (2019) 311–317.
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M.D. Shannon, T. Theint, D. Mukhopadhyay, K. Surewicz, W.K. Surewicz, D. Marion, P. Schanda, C.P. Jaroniec, ChemPhysChem 20 (2019) 311–317.
2019 | Journal Article | IST-REx-ID: 8413
Mechanistic insights into microsecond time-scale motion of solid proteins using complementary 15N and 1H relaxation dispersion techniques
P. Rovó, C.A. Smith, D. Gauto, B.L. de Groot, P. Schanda, R. Linser, Journal of the American Chemical Society 141 (2019) 858–869.
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P. Rovó, C.A. Smith, D. Gauto, B.L. de Groot, P. Schanda, R. Linser, Journal of the American Chemical Society 141 (2019) 858–869.
2019 | Journal Article | IST-REx-ID: 8415 |

Marked length spectrum, homoclinic orbits and the geometry of open dispersing billiards
P. Bálint, J. De Simoi, V. Kaloshin, M. Leguil, Communications in Mathematical Physics 374 (2019) 1531–1575.
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P. Bálint, J. De Simoi, V. Kaloshin, M. Leguil, Communications in Mathematical Physics 374 (2019) 1531–1575.
2019 | Journal Article | IST-REx-ID: 8416 |

On the finite dimensionality of integrable deformations of strictly convex integrable billiard tables
G. Huang, V. Kaloshin, Moscow Mathematical Journal 19 (2019) 307–327.
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G. Huang, V. Kaloshin, Moscow Mathematical Journal 19 (2019) 307–327.
2019 | Journal Article | IST-REx-ID: 8418 |

Asymptotic density of collision orbits in the Restricted Circular Planar 3 Body Problem
M. Guardia, V. Kaloshin, J. Zhang, Archive for Rational Mechanics and Analysis 233 (2019) 799–836.
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M. Guardia, V. Kaloshin, J. Zhang, Archive for Rational Mechanics and Analysis 233 (2019) 799–836.
2019 | Conference Paper | IST-REx-ID: 8570 |

ARCH-COMP19 Category Report: Continuous and hybrid systems with linear continuous dynamics
M. Althoff, S. Bak, M. Forets, G. Frehse, N. Kochdumper, R. Ray, C. Schilling, S. Schupp, in:, EPiC Series in Computing, EasyChair, 2019, pp. 14–40.
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M. Althoff, S. Bak, M. Forets, G. Frehse, N. Kochdumper, R. Ray, C. Schilling, S. Schupp, in:, EPiC Series in Computing, EasyChair, 2019, pp. 14–40.
2019 | Journal Article | IST-REx-ID: 5 |

The wonderful compactification for quantum groups
I.V. Ganev, Journal of the London Mathematical Society 99 (2019) 778–806.
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I.V. Ganev, Journal of the London Mathematical Society 99 (2019) 778–806.
2019 | Journal Article | IST-REx-ID: 5678 |

Poisson–Delaunay Mosaics of Order k
H. Edelsbrunner, A. Nikitenko, Discrete and Computational Geometry 62 (2019) 865–878.
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| arXiv
H. Edelsbrunner, A. Nikitenko, Discrete and Computational Geometry 62 (2019) 865–878.
2019 | Journal Article | IST-REx-ID: 5680
Prevalence of legitimate pollinators and nectar robbers and the consequences for fruit set in an Antirrhinum majus hybrid zone
C. Andalo, M. Burrus, S. Paute, C. Lauzeral, D. Field, Botany Letters 166 (2019) 80–92.
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C. Andalo, M. Burrus, S. Paute, C. Lauzeral, D. Field, Botany Letters 166 (2019) 80–92.
2019 | Journal Article | IST-REx-ID: 5789 |

Fluidization-mediated tissue spreading by mitotic cell rounding and non-canonical Wnt signalling
N. Petridou, S. Grigolon, G. Salbreux, E.B. Hannezo, C.-P.J. Heisenberg, Nature Cell Biology 21 (2019) 169–178.
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N. Petridou, S. Grigolon, G. Salbreux, E.B. Hannezo, C.-P.J. Heisenberg, Nature Cell Biology 21 (2019) 169–178.
2019 | Journal Article | IST-REx-ID: 5790 |

Extending partial representations of circle graphs
S. Chaplick, R. Fulek, P. Klavík, Journal of Graph Theory 91 (2019) 365–394.
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| arXiv
S. Chaplick, R. Fulek, P. Klavík, Journal of Graph Theory 91 (2019) 365–394.
2019 | Book Chapter | IST-REx-ID: 5793
Studying YAP-mediated 3D morphogenesis using fish embryos and human spheroids
Y. Asaoka, H. Morita, H. Furumoto, C.-P.J. Heisenberg, M. Furutani-Seiki, in:, A. Hergovich (Ed.), The Hippo Pathway, Springer, 2019, pp. 167–181.
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Y. Asaoka, H. Morita, H. Furumoto, C.-P.J. Heisenberg, M. Furutani-Seiki, in:, A. Hergovich (Ed.), The Hippo Pathway, Springer, 2019, pp. 167–181.
2019 | Journal Article | IST-REx-ID: 5817 |

Limiting shapes of confined lipid vesicles
B. Kavcic, A. Sakashita, H. Noguchi, P. Ziherl, Soft Matter 15 (2019) 602–614.
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B. Kavcic, A. Sakashita, H. Noguchi, P. Ziherl, Soft Matter 15 (2019) 602–614.
2019 | Journal Article | IST-REx-ID: 5828 |

Assembly responses of hippocampal CA1 place cells predict learned behavior in goal-directed spatial tasks on the radial eight-arm maze
H. Xu, P. Baracskay, J. O’Neill, J.L. Csicsvari, Neuron 101 (2019) 119–132.e4.
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H. Xu, P. Baracskay, J. O’Neill, J.L. Csicsvari, Neuron 101 (2019) 119–132.e4.
2019 | Journal Article | IST-REx-ID: 5856 |

Energy contribution of a point-interacting impurity in a Fermi gas
T. Moser, R. Seiringer, Annales Henri Poincare 20 (2019) 1325–1365.
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| arXiv
T. Moser, R. Seiringer, Annales Henri Poincare 20 (2019) 1325–1365.
2019 | Journal Article | IST-REx-ID: 5857 |

Thrackles: An improved upper bound
R. Fulek, J. Pach, Discrete Applied Mathematics 259 (2019) 266–231.
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| arXiv
R. Fulek, J. Pach, Discrete Applied Mathematics 259 (2019) 266–231.
2019 | Journal Article | IST-REx-ID: 5878 |

State space geometry of the chaotic pilot-wave hydrodynamics
N.B. Budanur, M. Fleury, Chaos: An Interdisciplinary Journal of Nonlinear Science 29 (2019).
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N.B. Budanur, M. Fleury, Chaos: An Interdisciplinary Journal of Nonlinear Science 29 (2019).
2019 | Journal Article | IST-REx-ID: 5886 |

Variational approaches to quantum impurities: from the Fröhlich polaron to the angulon
X. Li, G. Bighin, E. Yakaboylu, M. Lemeshko, Molecular Physics (2019).
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X. Li, G. Bighin, E. Yakaboylu, M. Lemeshko, Molecular Physics (2019).
2019 | Journal Article | IST-REx-ID: 5887 |

Per-session security: Password-based cryptography revisited
G. Demay, P. Gazi, U. Maurer, B. Tackmann, Journal of Computer Security 27 (2019) 75–111.
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G. Demay, P. Gazi, U. Maurer, B. Tackmann, Journal of Computer Security 27 (2019) 75–111.
2019 | Journal Article | IST-REx-ID: 5906 |

Analytically solvable renormalization group for the many-body localization transition
A. Goremykina, R. Vasseur, M. Serbyn, Physical Review Letters 122 (2019).
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| arXiv
A. Goremykina, R. Vasseur, M. Serbyn, Physical Review Letters 122 (2019).
2019 | Journal Article | IST-REx-ID: 5907 |

N-glycans of the microalga Chlorella vulgaris are of the oligomannosidic type but highly methylated
R. Mócsai, R. Figl, C. Troschl, R. Strasser, E. Svehla, M. Windwarder, A. Thader, F. Altmann, Scientific Reports 9 (2019).
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R. Mócsai, R. Figl, C. Troschl, R. Strasser, E. Svehla, M. Windwarder, A. Thader, F. Altmann, Scientific Reports 9 (2019).
2019 | Journal Article | IST-REx-ID: 5908 |

Ionic stress enhances ER–PM connectivity via phosphoinositide-associated SYT1 contact site expansion in Arabidopsis
E. Lee, S. Vanneste, J. Pérez-Sancho, F. Benitez-Fuente, M. Strelau, A.P. Macho, M.A. Botella, J. Friml, A. Rosado, Proceedings of the National Academy of Sciences of the United States of America 116 (2019) 1420–1429.
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E. Lee, S. Vanneste, J. Pérez-Sancho, F. Benitez-Fuente, M. Strelau, A.P. Macho, M.A. Botella, J. Friml, A. Rosado, Proceedings of the National Academy of Sciences of the United States of America 116 (2019) 1420–1429.
2019 | Journal Article | IST-REx-ID: 5911 |

Evolving inversions
R. Faria, K. Johannesson, R.K. Butlin, A.M. Westram, Trends in Ecology and Evolution 34 (2019) 239–248.
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R. Faria, K. Johannesson, R.K. Butlin, A.M. Westram, Trends in Ecology and Evolution 34 (2019) 239–248.
2019 | Journal Article | IST-REx-ID: 5943 |

Experiments on a jet in a crossflow in the low-velocity-ratio regime
L. Klotz, K. Gumowski, J.E. Wesfreid, Journal of Fluid Mechanics 863 (2019) 386–406.
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| arXiv
L. Klotz, K. Gumowski, J.E. Wesfreid, Journal of Fluid Mechanics 863 (2019) 386–406.
2019 | Journal Article | IST-REx-ID: 5944 |

Thermodynamics of duplication thresholds in synthetic protocell systems
B. Corominas-Murtra, Life 9 (2019).
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B. Corominas-Murtra, Life 9 (2019).
2019 | Journal Article | IST-REx-ID: 5945 |

Optimal decoding of cellular identities in a genetic network
M.D. Petkova, G. Tkačik, W. Bialek, E.F. Wieschaus, T. Gregor, Cell 176 (2019) 844–855.e15.
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M.D. Petkova, G. Tkačik, W. Bialek, E.F. Wieschaus, T. Gregor, Cell 176 (2019) 844–855.e15.
2019 | Conference Paper | IST-REx-ID: 5947 |

A simple and practical concurrent non-blocking unbounded graph with linearizable reachability queries
B. Chatterjee, S. Peri, M. Sa, N. Singhal, in:, ACM International Conference Proceeding Series, ACM, 2019, pp. 168–177.
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B. Chatterjee, S. Peri, M. Sa, N. Singhal, in:, ACM International Conference Proceeding Series, ACM, 2019, pp. 168–177.
2019 | Conference Paper | IST-REx-ID: 5948
Termination of nondeterministic probabilistic programs
H. Fu, K. Chatterjee, in:, International Conference on Verification, Model Checking, and Abstract Interpretation, Springer Nature, 2019, pp. 468–490.
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H. Fu, K. Chatterjee, in:, International Conference on Verification, Model Checking, and Abstract Interpretation, Springer Nature, 2019, pp. 468–490.
2019 | Journal Article | IST-REx-ID: 5986 |

A proof of the orbit conjecture for flipping edge-labelled triangulations
A. Lubiw, Z. Masárová, U. Wagner, Discrete & Computational Geometry 61 (2019) 880–898.
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A. Lubiw, Z. Masárová, U. Wagner, Discrete & Computational Geometry 61 (2019) 880–898.
2019 | Journal Article | IST-REx-ID: 6014 |

Elastic alfven waves in elastic turbulence
A. Varshney, V. Steinberg, Nature Communications 10 (2019).
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| arXiv
A. Varshney, V. Steinberg, Nature Communications 10 (2019).
2019 | Journal Article | IST-REx-ID: 6022 |

Genetic dissection of assortative mating behavior
R.M. Merrill, P. Rastas, S.H. Martin, M.C. Melo Hurtado, S. Barker, J. Davey, W.O. Mcmillan, C.D. Jiggins, PLoS Biology 17 (2019).
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R.M. Merrill, P. Rastas, S.H. Martin, M.C. Melo Hurtado, S. Barker, J. Davey, W.O. Mcmillan, C.D. Jiggins, PLoS Biology 17 (2019).
2019 | Journal Article | IST-REx-ID: 6023 |

A SOSEKI-based coordinate system interprets global polarity cues in arabidopsis
S. Yoshida, A. Van Der Schuren, M. Van Dop, L. Van Galen, S. Saiga, M. Adibi, B. Möller, C.A. Ten Hove, P. Marhavý, R. Smith, J. Friml, D. Weijers, Nature Plants 5 (2019) 160–166.
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S. Yoshida, A. Van Der Schuren, M. Van Dop, L. Van Galen, S. Saiga, M. Adibi, B. Möller, C.A. Ten Hove, P. Marhavý, R. Smith, J. Friml, D. Weijers, Nature Plants 5 (2019) 160–166.
2019 | Journal Article | IST-REx-ID: 6025 |

Light-activated Frizzled7 reveals a permissive role of non-canonical wnt signaling in mesendoderm cell migration
D. Capek, M. Smutny, A.M. Tichy, M. Morri, H.L. Janovjak, C.-P.J. Heisenberg, ELife 8 (2019).
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D. Capek, M. Smutny, A.M. Tichy, M. Morri, H.L. Janovjak, C.-P.J. Heisenberg, ELife 8 (2019).
2019 | Journal Article | IST-REx-ID: 6028 |

A solution theory for quasilinear singular SPDEs
M. Gerencser, M. Hairer, Communications on Pure and Applied Mathematics 72 (2019) 1983–2005.
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M. Gerencser, M. Hairer, Communications on Pure and Applied Mathematics 72 (2019) 1983–2005.
2019 | Journal Article | IST-REx-ID: 6029 |

A fast and simple contact printing approach to generate 2D protein nanopatterns
M. Lindner, A. Tresztenyak, G. Fülöp, W. Jahr, A. Prinz, I. Prinz, J.G. Danzl, G.J. Schütz, E. Sevcsik, Frontiers in Chemistry 6 (2019).
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M. Lindner, A. Tresztenyak, G. Fülöp, W. Jahr, A. Prinz, I. Prinz, J.G. Danzl, G.J. Schütz, E. Sevcsik, Frontiers in Chemistry 6 (2019).
2019 | Conference Paper | IST-REx-ID: 6035 |

JuliaReach: A toolbox for set-based reachability
S. Bogomolov, M. Forets, G. Frehse, K. Potomkin, C. Schilling, in:, Proceedings of the 22nd International Conference on Hybrid Systems: Computation and Control, ACM, 2019, pp. 39–44.
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| arXiv
S. Bogomolov, M. Forets, G. Frehse, K. Potomkin, C. Schilling, in:, Proceedings of the 22nd International Conference on Hybrid Systems: Computation and Control, ACM, 2019, pp. 39–44.
2019 | Conference Paper | IST-REx-ID: 6042 |

Semantic fault localization and suspiciousness ranking
M. Christakis, M. Heizmann, M.N. Mansur, C. Schilling, V. Wüstholz, in:, 25th International Conference on Tools and Algorithms for the Construction and Analysis of Systems , Springer Nature, 2019, pp. 226–243.
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M. Christakis, M. Heizmann, M.N. Mansur, C. Schilling, V. Wüstholz, in:, 25th International Conference on Tools and Algorithms for the Construction and Analysis of Systems , Springer Nature, 2019, pp. 226–243.
2019 | Journal Article | IST-REx-ID: 6046 |

Temporal order and precision of complex stress responses in individual bacteria
K. Mitosch, G. Rieckh, M.T. Bollenbach, Molecular Systems Biology 15 (2019).
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K. Mitosch, G. Rieckh, M.T. Bollenbach, Molecular Systems Biology 15 (2019).
2019 | Journal Article | IST-REx-ID: 6049 |

Feedback-induced self-oscillations in large interacting systems subjected to phase transitions
D. De Martino, Journal of Physics A: Mathematical and Theoretical 52 (2019).
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D. De Martino, Journal of Physics A: Mathematical and Theoretical 52 (2019).
2019 | Journal Article | IST-REx-ID: 6050 |

Two circles and only a straightedge
A. Akopyan, R. Fedorov, Proceedings of the American Mathematical Society 147 (2019) 91–102.
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A. Akopyan, R. Fedorov, Proceedings of the American Mathematical Society 147 (2019) 91–102.
2019 | Journal Article | IST-REx-ID: 6052 |

A practical guide to optimization in X10 expansion microscopy
S.M. Truckenbrodt, C.M. Sommer, S.O. Rizzoli, J.G. Danzl, Nature Protocols 14 (2019) 832–863.
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S.M. Truckenbrodt, C.M. Sommer, S.O. Rizzoli, J.G. Danzl, Nature Protocols 14 (2019) 832–863.
2019 | Journal Article | IST-REx-ID: 6053 |

Quantum electromechanics of a hypersonic crystal
M. Kalaee, M. Mirhosseini, P.B. Dieterle, M. Peruzzo, J.M. Fink, O. Painter, Nature Nanotechnology 14 (2019) 334–339.
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M. Kalaee, M. Mirhosseini, P.B. Dieterle, M. Peruzzo, J.M. Fink, O. Painter, Nature Nanotechnology 14 (2019) 334–339.
2019 | Research Data | IST-REx-ID: 6060 |

Supplementary data for "Sex-biased gene expression and dosage compensation on the Artemia franciscana Z-chromosome" (Huylman, Toups et al., 2019).
B. Vicoso, (2019).
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B. Vicoso, (2019).
2019 | Research Data | IST-REx-ID: 6062 |

Supplementary Code and Data for the paper "The Entorhinal Cognitive Map is Attracted to Goals"
M. Nardin, (2019).
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M. Nardin, (2019).
2019 | Journal Article | IST-REx-ID: 6069 |

Stokes flow analogous to viscous electron current in graphene
J. Mayzel, V. Steinberg, A. Varshney, Nature Communications 10 (2019).
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J. Mayzel, V. Steinberg, A. Varshney, Nature Communications 10 (2019).
2019 | Thesis | IST-REx-ID: 6071 |

Coevolution of transcription factors and their binding sites in sequence space
R. Prizak, Coevolution of Transcription Factors and Their Binding Sites in Sequence Space, IST Austria, 2019.
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R. Prizak, Coevolution of Transcription Factors and Their Binding Sites in Sequence Space, IST Austria, 2019.
2019 | Research Data | IST-REx-ID: 6074 |

Supplementary data for the research paper "Haploinsufficiency of the intellectual disability gene SETD5 disturbs developmental gene expression and cognition"
C. Dotter, G. Novarino, (2019).
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C. Dotter, G. Novarino, (2019).
2019 | Journal Article | IST-REx-ID: 6944 |

KS(conf): A light-weight test if a multiclass classifier operates outside of its specifications
R. Sun, C. Lampert, International Journal of Computer Vision 128 (2019) 970–995.
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R. Sun, C. Lampert, International Journal of Computer Vision 128 (2019) 970–995.
2019 | Journal Article | IST-REx-ID: 6955 |

Universal physics of bound states of a few charged particles
C.H. Schmickler, H.-W. Hammer, A. Volosniev, Physics Letters B 798 (2019).
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| arXiv
C.H. Schmickler, H.-W. Hammer, A. Volosniev, Physics Letters B 798 (2019).
2019 | Thesis | IST-REx-ID: 6957 |

Onset of turbulence in plane Poiseuille flow
C.S. Paranjape, Onset of Turbulence in Plane Poiseuille Flow, IST Austria, 2019.
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C.S. Paranjape, Onset of Turbulence in Plane Poiseuille Flow, IST Austria, 2019.
2019 | Journal Article | IST-REx-ID: 6972 |

Self-stabilising Byzantine clock synchronisation is almost as easy as consensus
C. Lenzen, J. Rybicki, Journal of the ACM 66 (2019).
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| arXiv
C. Lenzen, J. Rybicki, Journal of the ACM 66 (2019).
2019 | Journal Article | IST-REx-ID: 6978 |

Geometry of transient chaos in streamwise-localized pipe flow turbulence
N.B. Budanur, A. Dogra, B. Hof, Physical Review Fluids 4 (2019) 102401.
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| arXiv
N.B. Budanur, A. Dogra, B. Hof, Physical Review Fluids 4 (2019) 102401.
2019 | Journal Article | IST-REx-ID: 6979
Gut homeostasis: Active migration of intestinal epithelial cells in tissue renewal
A. Kopf, M.K. Sixt, Current Biology 29 (2019) R1091–R1093.
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| PubMed | Europe PMC
A. Kopf, M.K. Sixt, Current Biology 29 (2019) R1091–R1093.
2019 | Journal Article | IST-REx-ID: 6980 |

Tissue rheology in embryonic organization
N. Petridou, C.-P.J. Heisenberg, The EMBO Journal 38 (2019).
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| PubMed | Europe PMC
N. Petridou, C.-P.J. Heisenberg, The EMBO Journal 38 (2019).
2019 | Journal Article | IST-REx-ID: 6982 |

Recognizing weak embeddings of graphs
H. Akitaya, R. Fulek, C. Tóth, ACM Transactions on Algorithms 15 (2019).
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| arXiv
H. Akitaya, R. Fulek, C. Tóth, ACM Transactions on Algorithms 15 (2019).
2019 | Journal Article | IST-REx-ID: 6983 |

Clustering of activated CD8 T cells around Malaria-infected hepatocytes is rapid and is driven by antigen-specific cells
R.K. Kelemen, H. Rajakaruna, I. Cockburn, V. Ganusov, Frontiers in Immunology 10 (2019).
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| PubMed | Europe PMC
R.K. Kelemen, H. Rajakaruna, I. Cockburn, V. Ganusov, Frontiers in Immunology 10 (2019).
2019 | Conference Paper | IST-REx-ID: 6985 |

Response characterization for auditing cell dynamics in long short-term memory networks
R. Hasani, A. Amini, M. Lechner, F. Naser, R. Grosu, D. Rus, in:, Proceedings of the International Joint Conference on Neural Networks, IEEE, 2019.
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R. Hasani, A. Amini, M. Lechner, F. Naser, R. Grosu, D. Rus, in:, Proceedings of the International Joint Conference on Neural Networks, IEEE, 2019.
2019 | Journal Article | IST-REx-ID: 6986 |

A colimit of traces of reflection groups
P. Li, Proceedings of the American Mathematical Society 147 (2019) 4597–4604.
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P. Li, Proceedings of the American Mathematical Society 147 (2019) 4597–4604.
2019 | Book Chapter | IST-REx-ID: 6987 |

Emergence of embryo shape during cleavage divisions
A. McDougall, J. Chenevert, B.G. Godard, R. Dumollard, in:, W. Tworzydlo, S.M. Bilinski (Eds.), Evo-Devo: Non-Model Species in Cell and Developmental Biology, Springer Nature, 2019, pp. 127–154.
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A. McDougall, J. Chenevert, B.G. Godard, R. Dumollard, in:, W. Tworzydlo, S.M. Bilinski (Eds.), Evo-Devo: Non-Model Species in Cell and Developmental Biology, Springer Nature, 2019, pp. 127–154.
2019 | Journal Article | IST-REx-ID: 6988
Platelets in host defense: Experimental and clinical insights
L. Nicolai, F.R. Gärtner, S. Massberg, Trends in Immunology 40 (2019) 922–938.
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| PubMed | Europe PMC
L. Nicolai, F.R. Gärtner, S. Massberg, Trends in Immunology 40 (2019) 922–938.
2019 | Conference Paper | IST-REx-ID: 6989 |

Folding polyominoes with holes into a cube
O. Aichholzer, H.A. Akitaya, K.C. Cheung, E.D. Demaine, M.L. Demaine, S.P. Fekete, L. Kleist, I. Kostitsyna, M. Löffler, Z. Masárová, K. Mundilova, C. Schmidt, in:, Proceedings of the 31st Canadian Conference on Computational Geometry, Canadian Conference on Computational Geometry, 2019, pp. 164–170.
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O. Aichholzer, H.A. Akitaya, K.C. Cheung, E.D. Demaine, M.L. Demaine, S.P. Fekete, L. Kleist, I. Kostitsyna, M. Löffler, Z. Masárová, K. Mundilova, C. Schmidt, in:, Proceedings of the 31st Canadian Conference on Computational Geometry, Canadian Conference on Computational Geometry, 2019, pp. 164–170.
2019 | Journal Article | IST-REx-ID: 6999 |

Salicylic acid-mediated plasmodesmal closure via Remorin-dependent lipid organization
D. Huang, Y. Sun, Z. Ma, M. Ke, Y. Cui, Z. Chen, C. Chen, C. Ji, T. Tran, L. Yang, S. Lam, Y. Han, G. Shu, J. Friml, Y. Miao, L. Jiang, X. Chen, Proceedings of the National Academy of Sciences of the United States of America 116 (2019) 21274–21284.
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| PubMed | Europe PMC
D. Huang, Y. Sun, Z. Ma, M. Ke, Y. Cui, Z. Chen, C. Chen, C. Ji, T. Tran, L. Yang, S. Lam, Y. Han, G. Shu, J. Friml, Y. Miao, L. Jiang, X. Chen, Proceedings of the National Academy of Sciences of the United States of America 116 (2019) 21274–21284.
2019 | Journal Article | IST-REx-ID: 7000 |

Convergence analysis of projection method for variational inequalities
Y. Shehu, O.S. Iyiola, X.-H. Li, Q.-L. Dong, Computational and Applied Mathematics 38 (2019).
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| Download Published Version (ext.)
| arXiv
Y. Shehu, O.S. Iyiola, X.-H. Li, Q.-L. Dong, Computational and Applied Mathematics 38 (2019).
2019 | Journal Article | IST-REx-ID: 7002
Optimal multiple importance sampling
I. Kondapaneni, P. Vevoda, P. Grittmann, T. Skrivan, P. Slusallek, J. Křivánek, ACM Transactions on Graphics 38 (2019).
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| DOI
I. Kondapaneni, P. Vevoda, P. Grittmann, T. Skrivan, P. Slusallek, J. Křivánek, ACM Transactions on Graphics 38 (2019).
2019 | Journal Article | IST-REx-ID: 7005 |

Synaptic vesicle generation from activity‐dependent bulk endosomes requires a dephosphorylation‐dependent dynamin–syndapin interaction
G.T. Cheung, M.A. Cousin, Journal of Neurochemistry 151 (2019) 570–583.
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| PubMed | Europe PMC
G.T. Cheung, M.A. Cousin, Journal of Neurochemistry 151 (2019) 570–583.
2019 | Journal Article | IST-REx-ID: 7007 |

A new coding paradigm for the primitive relay channel
M. Mondelli, S.H. Hassani, R. Urbanke, Algorithms 12 (2019).
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| DOI
| arXiv
M. Mondelli, S.H. Hassani, R. Urbanke, Algorithms 12 (2019).
2019 | Journal Article | IST-REx-ID: 7009
Mechanisms of 3D cell migration
K. Yamada, M.K. Sixt, Nature Reviews Molecular Cell Biology 20 (2019) 738–752.
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| PubMed | Europe PMC
K. Yamada, M.K. Sixt, Nature Reviews Molecular Cell Biology 20 (2019) 738–752.
2019 | Conference Paper | IST-REx-ID: 7010 |

Blood cell-vessel wall interactions probed by reflection interference contrast microscopy
H.S. Davies, N.S. Baranova, N. El Amri, L. Coche-Guérente, C. Verdier, L. Bureau, R.P. Richter, D. Débarre, in:, Advances in Microscopic Imaging II, SPIE, 2019.
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| Download Published Version (ext.)
H.S. Davies, N.S. Baranova, N. El Amri, L. Coche-Guérente, C. Verdier, L. Bureau, R.P. Richter, D. Débarre, in:, Advances in Microscopic Imaging II, SPIE, 2019.
2019 | Journal Article | IST-REx-ID: 7013 |

Probing the many-body localization phase transition with superconducting circuits
T. Orell, A. Michailidis, M. Serbyn, M. Silveri, Physical Review B 100 (2019).
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| arXiv
T. Orell, A. Michailidis, M. Serbyn, M. Silveri, Physical Review B 100 (2019).