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8157 Publications
2011 | Journal Article | IST-REx-ID: 3288 |

Smutny M, Wu S, Gomez G, Mangold S, Yap A, Hamilton N. 2011. Multicomponent analysis of junctional movements regulated by Myosin II isoforms at the epithelial zonula adherens. PLoS One. 6(7).
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2011 | Journal Article | IST-REx-ID: 3286
Weghuber J, Aichinger M, Brameshuber M, Wieser S, Ruprecht V, Plochberger B, Madl J, Horner A, Reipert S, Lohner K, Henics T, Schuetz G. 2011. Cationic amphipathic peptides accumulate sialylated proteins and lipids in the plasma membrane of eukaryotic host cells. Biochimica et Biophysica Acta (BBA) - Biomembranes. 1808(10), 2581–2590.
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2011 | Conference Paper | IST-REx-ID: 3302 |

Henzinger TA, Singh A, Singh V, Wies T, Zufferey D. 2011. Static scheduling in clouds. HotCloud: Workshop on Hot Topics in Cloud Computing, 1–6.
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2011 | Conference Paper | IST-REx-ID: 3301 |

Henzinger TA, Mateescu M. 2011. Tail approximation for the chemical master equation. WCSB: Workshop on Computational Systems Biology (TICSP).
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2011 | Conference Paper | IST-REx-ID: 3299 |

Henzinger TA, Mateescu M. 2011. Propagation models for computing biochemical reaction networks. CMSB: Computational Methods in Systems Biology, 1–3.
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2011 | Journal Article | IST-REx-ID: 3320 |

Nowozin S, Lampert C. 2011. Structured learning and prediction in computer vision. Foundations and Trends in Computer Graphics and Vision. 6(3–4), 185–365.
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2011 | Conference Paper | IST-REx-ID: 3316 |

Bloem R, Chatterjee K, Greimel K, Henzinger TA, Jobstmann B. 2011. Specification-centered robustness. 6th IEEE International Symposium on Industrial and Embedded Systems. SIES: International Symposium on Industrial Embedded Systems, 176–185.
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2011 | Conference Paper | IST-REx-ID: 3319
Quadrianto N, Lampert C. 2011. Learning multi-view neighborhood preserving projections. ICML: International Conference on Machine Learning, 425–432.
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2011 | Journal Article | IST-REx-ID: 3318 |

Eggermann E, Jonas PM. 2011. How the “slow” Ca(2+) buffer parvalbumin affects transmitter release in nanodomain coupling regimes at GABAergic synapses. Nature Neuroscience. 15, 20–22.
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2011 | Book Chapter | IST-REx-ID: 3335 |

Van De Weygaert R, Vegter G, Edelsbrunner H, Jones B, Pranav P, Park C, Hellwing W, Eldering B, Kruithof N, Bos P, Hidding J, Feldbrugge J, Ten Have E, Van Engelen M, Caroli M, Teillaud M. 2011.Alpha, Betti and the Megaparsec Universe: On the topology of the Cosmic Web. In: Transactions on Computational Science XIV. LNCS, vol. 6970, 60–101.
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| arXiv
2011 | Conference Paper | IST-REx-ID: 3329 |

Berberich E, Halperin D, Kerber M, Pogalnikova R. 2011. Deconstructing approximate offsets. Proceedings of the twenty-seventh annual symposium on Computational geometry. SCG: Symposium on Computational Geometry, 187–196.
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2011 | Journal Article | IST-REx-ID: 3332 |

Kerber M, Sagraloff M. 2011. A note on the complexity of real algebraic hypersurfaces. Graphs and Combinatorics. 27(3), 419–430.
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2011 | Conference Paper | IST-REx-ID: 3330 |

Kerber M, Sagraloff M. 2011. Root refinement for real polynomials. ISSAC: International Symposium on Symbolic and Algebraic Computation, 209–216.
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| arXiv
2011 | Conference Paper | IST-REx-ID: 3328 |

Berberich E, Hemmer M, Kerber M. 2011. A generic algebraic kernel for non linear geometric applications. SCG: Symposium on Computational Geometry, 179–186.
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2011 | Journal Article | IST-REx-ID: 3353 |

Tripakis S, Lickly B, Henzinger TA, Lee E. 2011. A theory of synchronous relational interfaces. ACM Transactions on Programming Languages and Systems (TOPLAS). 33(4), 14.
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2011 | Conference Paper | IST-REx-ID: 3355 |

Halalai R, Henzinger TA, Singh V. 2011. Quantitative evaluation of BFT protocols. QEST: Quantitative Evaluation of Systems, 255–264.
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2011 | Conference Paper | IST-REx-ID: 3351 |

Chatterjee K, Doyen L, Singh R. 2011. On memoryless quantitative objectives. FCT: Fundamentals of Computation Theory, LNCS, vol. 6914, 148–159.
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2011 | Journal Article | IST-REx-ID: 3354
Chatterjee K, De Alfaro L, Henzinger TA. 2011. Qualitative concurrent parity games. ACM Transactions on Computational Logic (TOCL). 12(4), 28.
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2011 | Conference Paper | IST-REx-ID: 3349 |

Chatterjee K, Fijalkow N. 2011. A reduction from parity games to simple stochastic games. GandALF: Games, Automata, Logic, and Formal Verification, EPTCS, vol. 54, 74–86.
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2011 | Conference Paper | IST-REx-ID: 3362 |

Fisher J, Henzinger TA, Nickovic D, Piterman N, Singh A, Vardi M. 2011. Dynamic reactive modules. CONCUR: Concurrency Theory, LNCS, vol. 6901, 404–418.
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2011 | Conference Paper | IST-REx-ID: 3365 |

Chatterjee K, Henzinger TA, Jobstmann B, Singh R. 2011. QUASY: quantitative synthesis tool. TACAS: Tools and Algorithms for the Construction and Analysis of Systems, LNCS, vol. 6605, 267–271.
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2011 | Conference Paper | IST-REx-ID: 3367
Chen C, Kerber M. 2011. An output sensitive algorithm for persistent homology. SoCG: Symposium on Computational Geometry, 207–216.
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2011 | Preprint | IST-REx-ID: 3363 |

Chatterjee K, Henzinger TA, Tracol M. The decidability frontier for probabilistic automata on infinite words.
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| arXiv
2011 | Journal Article | IST-REx-ID: 3372 |

Abbot P et al. 2011. Inclusive fitness theory and eusociality. Nature. 471(7339), E1–E4.
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| PubMed | Europe PMC
2011 | Journal Article | IST-REx-ID: 3371 |

Sixt MK, Parent C. 2011. Cells on the move in Philadelphia. Molecular Biology and Evolution. 22(6), 724.
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2011 | Journal Article | IST-REx-ID: 3374 |

Tkačik G, Walczak A. 2011. Information transmission in genetic regulatory networks a review. Journal of Physics: Condensed Matter. 23(15), 153102.
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2011 | Journal Article | IST-REx-ID: 3368 |

Krens G, Möllmert S, Heisenberg C-PJ. 2011. Enveloping cell layer differentiation at the surface of zebrafish germ layer tissue explants. PNAS. 108(3), E9–E10.
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| PubMed | Europe PMC
2011 | Journal Article | IST-REx-ID: 3370 |

Kupczok A. 2011. Consequences of different null models on the tree shape bias of supertree methods. Systematic Biology. 60(2), 218–225.
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2011 | Journal Article | IST-REx-ID: 3373 |

Jahnel M, Behrndt M, Jannasch A, Schaeffer E, Grill S. 2011. Measuring the complete force field of an optical trap. Optics Letters. 36(7), 1260–1262.
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2011 | Journal Article | IST-REx-ID: 3396 |

Stockinger P, Heisenberg C-PJ, Maître J-L. 2011. Defective neuroepithelial cell cohesion affects tangential branchiomotor neuron migration in the zebrafish neural tube. Development. 138(21), 4673–4683.
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2011 | Journal Article | IST-REx-ID: 3393 |

Barton NH, Turelli M. 2011. Spatial waves of advance with bistable dynamics: Cytoplasmic and genetic analogues of Allee effects. American Naturalist. 178(3), E48–E75.
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2011 | Journal Article | IST-REx-ID: 3394 |

Polechova J, Barton NH. 2011. Genetic drift widens the expected cline but narrows the expected cline width. Genetics. 189(1), 227–235.
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2011 | Journal Article | IST-REx-ID: 3390 |

Barton NH, Etheridge A. 2011. The relation between reproductive value and genetic contribution. Genetics. 188(4), 953–973.
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2011 | Journal Article | IST-REx-ID: 3391 |

de Vladar H, Barton NH. 2011. The contribution of statistical physics to evolutionary biology. Trends in Ecology and Evolution. 26(8), 424–432.
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2011 | Journal Article | IST-REx-ID: 3397 |

Maître J-L, Heisenberg C-PJ. 2011. The role of adhesion energy in controlling cell-cell contacts. Current Opinion in Cell Biology. 23(5), 508–514.
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2011 | Journal Article | IST-REx-ID: 3405 |

Janovjak HL, Sandoz G, Isacoff E. 2011. Modern ionotropic glutamate receptor with a K+ selectivity signature sequence. Nature Communications. 2(232), 1–6.
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2011 | Journal Article | IST-REx-ID: 3505 |

Sixt MK, Lämmermann T. 2011. In vitro analysis of chemotactic leukocyte migration in 3D environments. Cell Migration. 769, 149–165.
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2011 | Journal Article | IST-REx-ID: 3784 |

Palero F, Guerao G, Clark P, Abello P. 2011. Scyllarus arctus (Crustacea: Decapoda: Scyllaridae) final stage phyllosoma identified by DNA analysis, with morphological description. Journal of the Marine Biological Association of the United Kingdom. 91(2), 485–492.
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2011 | Journal Article | IST-REx-ID: 3781
Fasy BT. 2011. The difference in length of curves in R^n. Acta Sci. Math. (Szeged). 77(1–2), 359–367.
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2011 | Book Chapter | IST-REx-ID: 3796 |

Edelsbrunner H, Kerber M. 2011.Covering and packing with spheres by diagonal distortion in R^n. In: Rainbow of Computer Science. LNCS, vol. 6570, 20–35.
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2011 | Journal Article | IST-REx-ID: 3381 |

Henzinger TA, Jobstmann B, Wolf V. 2011. Formalisms for specifying Markovian population models. IJFCS: International Journal of Foundations of Computer Science. 22(4), 823–841.
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2011 | Journal Article | IST-REx-ID: 386 |

Alpichshev Z, Analytis JG, Chu JH, Fisher IR, Kapitulnik A. 2011. STM imaging of a bound state along a step on the surface of the topological insulator Bi2Te3. Physical Review B - Condensed Matter and Materials Physics. 84(4).
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| arXiv
2011 | Journal Article | IST-REx-ID: 3315 |

Chatterjee K, Henzinger TA, Prabhu V. 2011. Timed parity games: Complexity and robustness. Logical Methods in Computer Science. 7(4).
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2011 | Journal Article | IST-REx-ID: 3085
Ding Z, Galván Ampudia C, Demarsy E, Łangowski Ł, Kleine Vehn J, Fan Y, Morita M, Tasaka M, Fankhauser C, Offringa R, Friml J. 2011. Light-mediated polarization of the PIN3 auxin transporter for the phototropic response in Arabidopsis. Nature Cell Biology. 13(4), 447–453.
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2011 | Journal Article | IST-REx-ID: 3101 |

Zwiewka M, Feraru E, Möller B, Hwang I, Feraru M, Kleine Vehn J, Weijers D, Friml J. 2011. The AP 3 adaptor complex is required for vacuolar function in Arabidopsis. Cell Research. 21(12), 1711–1722.
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2011 | Journal Article | IST-REx-ID: 3098
Kleine Vehn J, Wabnik KT, Martinière A, Łangowski Ł, Willig K, Naramoto S, Leitner J, Tanaka H, Jakobs S, Robert S, Luschnig C, Govaerts W, Hell S, Runions J, Friml J. 2011. Recycling, clustering and endocytosis jointly maintain PIN auxin carrier polarity at the plasma membrane. Molecular Systems Biology. 7.
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2011 | Journal Article | IST-REx-ID: 3100 |

Vanneste S, Coppens F, Lee E, Donner T, Xie Z, Van Isterdael G, Dhondt S, De Winter F, De Rybel B, Vuylsteke M, De Veylder L, Friml J, Inzé D, Grotewold E, Scarpella E, Sack F, Beemster G, Beeckman T. 2011. Developmental regulation of CYCA2s contributes to tissue-specific proliferation in Arabidopsis . EMBO Journal. 30(16), 3430–3441.
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2011 | Journal Article | IST-REx-ID: 3099
Drakakaki G, Robert S, Szatmári A, Brown M, Nagawa S, Van Damme D, Leonard M, Yang Z, Girke T, Schmid S, Russinova E, Friml J, Raikhel N, Hicks G. 2011. Clusters of bioactive compounds target dynamic endomembrane networks in vivo. PNAS. 108(43), 17850–17855.
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2011 | Journal Article | IST-REx-ID: 3097
Marhavý P, Bielach A, Abas L, Abuzeineh A, Duclercq J, Tanaka H, Pařezová M, Petrášek J, Friml J, Kleine Vehn J, Benková E. 2011. Cytokinin modulates endocytic trafficking of PIN1 auxin efflux carrier to control plant organogenesis. Developmental Cell. 21(4), 796–804.
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2011 | Journal Article | IST-REx-ID: 3138
Sullivan D, Csicsvari JL, Mizuseki K, Montgomery S, Diba K, Buzsáki G. 2011. Relationships between hippocampal sharp waves ripples and fast gamma oscillation Influence of dentate and entorhinal cortical activity. Journal of Neuroscience. 31(23), 8605–8616.
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2011 | Conference Paper | IST-REx-ID: 3238
Kiltz E, Pietrzak KZ, Cash D, Jain A, Venturi D. 2011. Efficient authentication from hard learning problems. EUROCRYPT: Theory and Applications of Cryptographic Techniques, LNCS, vol. 6632, 7–26.
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2011 | Thesis | IST-REx-ID: 3275 |

Schumann K. 2011. The role of chemotactic gradients in dendritic cell migration. IST Austria.
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2011 | Journal Article | IST-REx-ID: 3276 |

Prentice J, Homann J, Simmons K, Tkačik G, Balasubramanian V, Nelson P. 2011. Fast, scalable, Bayesian spike identification for multi-electrode arrays. PLoS One. 6(7).
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2011 | Conference Paper | IST-REx-ID: 3270
Chen C, Kerber M. 2011. Persistent homology computation with a twist. EuroCG: European Workshop on Computational Geometry, 197–200.
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2011 | Thesis | IST-REx-ID: 3273
Maître J-L. 2011. Mechanics of adhesion and de‐adhesion in zebrafish germ layer progenitors. IST Austria.
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2011 | Conference Paper | IST-REx-ID: 3298 |

Raveendran K, Wojtan C, Turk G. 2011. Hybrid smoothed particle hydrodynamics. SCA: ACM SIGGRAPH/Eurographics Symposium on Computer animation, 33–42.
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2011 | Conference Paper | IST-REx-ID: 3297 |

Wojtan C, Müller Fischer M, Brochu T. 2011. Liquid simulation with mesh-based surface tracking. SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, 8.
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2011 | Journal Article | IST-REx-ID: 3290 |

Lohse K, Harrison R, Barton NH. 2011. A general method for calculating likelihoods under the coalescent process. Genetics. 189(3), 977–987.
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2011 | Conference Poster | IST-REx-ID: 3312 |

Zheng Y, Gu S, Edelsbrunner H, Tomasi C, Benfey P. 2011. Detailed reconstruction of 3D plant root shape, IEEE,p.
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2011 | Conference Paper | IST-REx-ID: 3313 |

Chen C, Edelsbrunner H. 2011. Diffusion runs low on persistence fast. Proceedings of the IEEE International Conference on Computer Vision. ICCV: International Conference on Computer Vision, 6126271.
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2011 | Book Chapter | IST-REx-ID: 3311 |

Edelsbrunner H.Alpha shapes - a survey. In: Tessellations in the Sciences: Virtues, Techniques and Applications of Geometric Tilings. .
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2011 | Conference Paper | IST-REx-ID: 3326 |

Almagor S, Boker U, Kupferman O. 2011. What’s decidable about weighted automata . ATVA: Automated Technology for Verification and Analysis, LNCS, vol. 6996, 482–491.
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2011 | Conference Paper | IST-REx-ID: 3324 |

Piskac R, Wies T. 2011. Decision procedures for automating termination proofs. VMCAI: Verification Model Checking and Abstract Interpretation, LNCS, vol. 6538, 371–386.
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2011 | Conference Paper | IST-REx-ID: 3163
Lampert C. 2011. Maximum margin multi-label structured prediction. NIPS: Neural Information Processing Systems.
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2011 | Conference Poster | IST-REx-ID: 3322
Lampert C. 2011. Maximum margin multi label structured prediction, Neural Information Processing Systems,p.
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2011 | Preprint | IST-REx-ID: 3339 |

Chatterjee K, De Alfaro L, Pritam R. 2011. Magnifying lens abstraction for stochastic games with discounted and long-run average objectives. arXiv, .
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| arXiv
2011 | Conference Paper | IST-REx-ID: 3342 |

Chatterjee K, Henzinger MH, Joglekar M, Nisarg S. 2011. Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives. CAV: Computer Aided Verification, LNCS, vol. 6806, 260–276.
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| arXiv
2011 | Conference Paper | IST-REx-ID: 3347 |

Chatterjee K, Fijalkow N. 2011. Finitary languages. LATA: Language and Automata Theory and Applications, LNCS, vol. 6638, 216–226.
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| arXiv
2011 | Conference Paper | IST-REx-ID: 3346 |

Brázdil T, Brožek V, Chatterjee K, Forejt V, Kučera A. 2011. Two views on multiple mean payoff objectives in Markov Decision Processes. LICS: Logic in Computer Science, 5970225.
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2011 | Conference Paper | IST-REx-ID: 3348 |

Chatterjee K, Prabhu V. 2011. Synthesis of memory efficient real time controllers for safety objectives. HSCC: Hybrid Systems - Computation and Control, 221–230.
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2011 | Conference Paper | IST-REx-ID: 3343 |

Chatterjee K, Henzinger MH. 2011. Faster and dynamic algorithms for maximal end-component decomposition and related graph problems in probabilistic verification. SODA: Symposium on Discrete Algorithms, 1318–1336.
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2011 | Conference Paper | IST-REx-ID: 3360 |

Boker U, Henzinger TA. 2011. Determinizing discounted-sum automata. CSL: Computer Science Logic, LIPIcs, vol. 12, 82–96.
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