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7704 Publications


2017 | Journal Article | IST-REx-ID: 946 | OA
von Wangenheim, D., Hauschild, R., Fendrych, M., Barone, V., Benková, E., & Friml, J. (2017). Live tracking of moving samples in confocal microscopy for vertically grown roots. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.26792
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2017 | Journal Article | IST-REx-ID: 947 | OA
De Martino, D., Capuani, F., & De Martino, A. (2017). Quantifying the entropic cost of cellular growth control. Physical Review E Statistical Nonlinear and Soft Matter Physics . American Institute of Physics. https://doi.org/10.1103/PhysRevE.96.010401
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2017 | Conference Paper | IST-REx-ID: 950 | OA
Avni, G., Henzinger, T. A., & Chonev, V. K. (2017). Infinite-duration bidding games (Vol. 85). Presented at the CONCUR: Concurrency Theory, Berlin, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.CONCUR.2017.21
View | Files available | DOI | arXiv
 

2017 | Journal Article | IST-REx-ID: 9506 | OA
Zilberman, D. (2017). An evolutionary case for functional gene body methylation in plants and animals. Genome Biology. Springer Nature. https://doi.org/10.1186/s13059-017-1230-2
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2017 | Journal Article | IST-REx-ID: 951 | OA
Schmidt, T., Barton, N. H., Rasic, G., Turley, A., Montgomery, B., Iturbe Ormaetxe, I., … Turelli, M. (2017). Local introduction and heterogeneous spatial spread of dengue-suppressing Wolbachia through an urban population of Aedes Aegypti. PLoS Biology. Public Library of Science. https://doi.org/10.1371/journal.pbio.2001894
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2017 | Journal Article | IST-REx-ID: 952 | OA
Turelli, M., & Barton, N. H. (2017). Deploying dengue-suppressing Wolbachia: Robust models predict slow but effective spatial spread in Aedes aegypti. Theoretical Population Biology. Elsevier. https://doi.org/10.1016/j.tpb.2017.03.003
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2017 | Journal Article | IST-REx-ID: 953 | OA
Charlesworth, D., Barton, N. H., & Charlesworth, B. (2017). The sources of adaptive evolution. Proceedings of the Royal Society of London Series B Biological Sciences. Royal Society, The. https://doi.org/10.1098/rspb.2016.2864
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2017 | Journal Article | IST-REx-ID: 954 | OA
Lagator, M., Paixao, T., Barton, N. H., Bollback, J. P., & Guet, C. C. (2017). On the mechanistic nature of epistasis in a canonical cis-regulatory element. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.25192
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2017 | Journal Article | IST-REx-ID: 955 | OA
Friedlander, T., Prizak, R., Barton, N. H., & Tkačik, G. (2017). Evolution of new regulatory functions on biophysically realistic fitness landscapes. Nature Communications. Nature Publishing Group. https://doi.org/10.1038/s41467-017-00238-8
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2017 | Journal Article | IST-REx-ID: 956 | OA
Carlen, E., & Maas, J. (2017). Gradient flow and entropy inequalities for quantum Markov semigroups with detailed balance. Journal of Functional Analysis. Academic Press. https://doi.org/10.1016/j.jfa.2017.05.003
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2017 | Book Chapter | IST-REx-ID: 957
Clifton, B., Whitfield, J., Sanchez-Romero, I., Herde, M., Henneberger, C., Janovjak, H. L., & Jackson, C. (2017). Ancestral protein reconstruction and circular permutation for improving the stability and dynamic range of FRET sensors. In V. Stein (Ed.), Synthetic Protein Switches (Vol. 1596, pp. 71–87). Springer. https://doi.org/10.1007/978-1-4939-6940-1_5
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2017 | Journal Article | IST-REx-ID: 9574 | OA
Bandeira, A. S., Ferber, A., & Kwan, M. A. (2017). Resilience for the Littlewood-Offord problem. Electronic Notes in Discrete Mathematics. Elsevier. https://doi.org/10.1016/j.endm.2017.06.025
View | DOI | Download Preprint (ext.) | arXiv
 

2017 | Book Chapter | IST-REx-ID: 958
Mitchell, J., Zhang, W., Herde, M., Henneberger, C., Janovjak, H. L., O’Mara, M., & Jackson, C. (2017). Method for developing optical sensors using a synthetic dye fluorescent protein FRET pair and computational modeling and assessment. In V. Stein (Ed.), Synthetic Protein Switches (Vol. 1596, pp. 89–99). Springer. https://doi.org/10.1007/978-1-4939-6940-1_6
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2017 | Journal Article | IST-REx-ID: 9588 | OA
Bandeira, A. S., Ferber, A., & Kwan, M. A. (2017). Resilience for the Littlewood–Offord problem. Advances in Mathematics. Elsevier. https://doi.org/10.1016/j.aim.2017.08.031
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2017 | Journal Article | IST-REx-ID: 9589 | OA
Greenhill, C., Isaev, M., Kwan, M. A., & McKay, B. D. (2017). The average number of spanning trees in sparse graphs with given degrees. European Journal of Combinatorics. Elsevier. https://doi.org/10.1016/j.ejc.2017.02.003
View | DOI | Download Published Version (ext.) | arXiv
 

2017 | Journal Article | IST-REx-ID: 959 | OA
De Martino, D. (2017). Scales and multimodal flux distributions in stationary metabolic network models via thermodynamics. Physical Review E Statistical Nonlinear and Soft Matter Physics . American Institute of Physics. https://doi.org/10.1103/PhysRevE.95.062419
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2017 | Journal Article | IST-REx-ID: 9590 | OA
Krivelevich, M., Kwan, M. A., & Sudakov, B. (2017). Bounded-degree spanning trees in randomly perturbed graphs. SIAM Journal on Discrete Mathematics. Society for Industrial & Applied Mathematics. https://doi.org/10.1137/15m1032910
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2017 | Conference Paper | IST-REx-ID: 962
Trinh, M., Chu, D. H., & Jaffar, J. (2017). Model counting for recursively-defined strings. In R. Majumdar & V. Kunčak (Eds.) (Vol. 10427, pp. 399–418). Presented at the CAV: Computer Aided Verification, Heidelberg, Germany: Springer. https://doi.org/10.1007/978-3-319-63390-9_21
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2017 | Conference Paper | IST-REx-ID: 963 | OA
Avni, G., Guha, S., & Kupferman, O. (2017). Timed network games with clocks (Vol. 83). Presented at the MFCS: Mathematical Foundations of Computer Science (SG), Aalborg, Denmark: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.MFCS.2017.37
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2017 | Journal Article | IST-REx-ID: 9660 | OA
Cheng, B., Tribello, G. A., & Ceriotti, M. (2017). The Gibbs free energy of homogeneous nucleation: From atomistic nuclei to the planar limit. The Journal of Chemical Physics. AIP Publishing. https://doi.org/10.1063/1.4997180
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2017 | Journal Article | IST-REx-ID: 9661 | OA
Cheng, B., & Ceriotti, M. (2017). Bridging the gap between atomistic and macroscopic models of homogeneous nucleation. The Journal of Chemical Physics. AIP Publishing. https://doi.org/10.1063/1.4973883
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2017 | Research Data Reference | IST-REx-ID: 9844
Nikolic, N., Schreiber, F., Dal Co, A., Kiviet, D., Bergmiller, T., Littmann, S., … Ackermann, M. (2017). Source data for figures and tables. Public Library of Science. https://doi.org/10.1371/journal.pgen.1007122.s018
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2017 | Research Data Reference | IST-REx-ID: 9845
Nikolic, N., Schreiber, F., Dal Co, A., Kiviet, D., Bergmiller, T., Littmann, S., … Ackermann, M. (2017). Mathematical model. Public Library of Science. https://doi.org/10.1371/journal.pgen.1007122.s017
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2017 | Research Data Reference | IST-REx-ID: 9846
Nikolic, N., Schreiber, F., Dal Co, A., Kiviet, D., Bergmiller, T., Littmann, S., … Ackermann, M. (2017). Supplementary methods. Public Library of Science. https://doi.org/10.1371/journal.pgen.1007122.s016
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2017 | Research Data Reference | IST-REx-ID: 9849
Lukacisinova, M., Novak, S., & Paixao, T. (2017). Modelling and simulation details. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1005609.s001
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2017 | Research Data Reference | IST-REx-ID: 9850
Lukacisinova, M., Novak, S., & Paixao, T. (2017). Extensions of the model. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1005609.s002
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2017 | Research Data Reference | IST-REx-ID: 9851
Lukacisinova, M., Novak, S., & Paixao, T. (2017). Heuristic prediction for multiple stresses. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1005609.s003
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2017 | Research Data Reference | IST-REx-ID: 9852
Lukacisinova, M., Novak, S., & Paixao, T. (2017). Resistance frequencies for different combination strategies. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1005609.s004
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2017 | Research Data Reference | IST-REx-ID: 9855
Chalk, M. J., Masset, P., Gutkin, B., & Denève, S. (2017). Supplementary appendix. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1005582.s001
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2017 | Research Data Reference | IST-REx-ID: 9856
Schmidt, T., Barton, N. H., Rasic, G., Turley, A., Montgomery, B., Iturbe Ormaetxe, I., … Turelli, M. (2017). Supporting Information concerning additional likelihood analyses and results. Public Library of Science. https://doi.org/10.1371/journal.pbio.2001894.s014
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2017 | Research Data Reference | IST-REx-ID: 9857
Schmidt, T., Barton, N. H., Rasic, G., Turley, A., Montgomery, B., Iturbe Ormaetxe, I., … Turelli, M. (2017). Supporting information concerning observed wMel frequencies and analyses of habitat variables. Public Library of Science . https://doi.org/10.1371/journal.pbio.2001894.s015
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2017 | Research Data Reference | IST-REx-ID: 9858
Schmidt, T., Barton, N. H., Rasic, G., Turley, A., Montgomery, B., Iturbe Ormaetxe, I., … Turelli, M. (2017). Excel file with data on mosquito densities, Wolbachia infection status and housing characteristics. Public Library of Science. https://doi.org/10.1371/journal.pbio.2001894.s016
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2017 | Journal Article | IST-REx-ID: 988 | OA
Nanda, G., Aguilera Servin, J. L., Rakyta, P., Kormányos, A., Kleiner, R., Koelle, D., … Goswami, S. (2017). Current-phase relation of ballistic graphene Josephson junctions. Nano Letters. American Chemical Society. https://doi.org/10.1021/acs.nanolett.7b00097
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2017 | Conference Paper | IST-REx-ID: 989
Maas, J., Rumpf, M., & Simon, S. (2017). Transport based image morphing with intensity modulation. In F. Lauze, Y. Dong, & A. Bjorholm Dahl (Eds.) (Vol. 10302, pp. 563–577). Presented at the SSVM:  Scale Space and Variational Methods in Computer Vision, Kolding, Denmark: Springer. https://doi.org/10.1007/978-3-319-58771-4_45
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2017 | Journal Article | IST-REx-ID: 990 | OA
Sachdeva, H., & Barton, N. H. (2017). Divergence and evolution of assortative mating in a polygenic trait model of speciation with gene flow. Evolution; International Journal of Organic Evolution. Wiley-Blackwell. https://doi.org/10.1111/evo.13252
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2017 | Journal Article | IST-REx-ID: 991
Chen, C., & Jonas, P. M. (2017). Synaptotagmins: That’s why so many. Neuron. Elsevier. https://doi.org/10.1016/j.neuron.2017.05.011
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2017 | Thesis | IST-REx-ID: 992 | OA
Rolinek, M. (2017). Complexity of constraint satisfaction. IST Austria. https://doi.org/10.15479/AT:ISTA:th_815
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2017 | Journal Article | IST-REx-ID: 993 | OA
Levina (Martius), A., & Priesemann, V. (2017). Subsampling scaling. Nature Communications. Nature Publishing Group. https://doi.org/10.1038/ncomms15140
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2017 | Journal Article | IST-REx-ID: 994 | OA
Cherepanov, I., & Lemeshko, M. (2017). Fingerprints of angulon instabilities in the spectra of matrix-isolated molecules. Physical Review Materials. American Physical Society. https://doi.org/10.1103/PhysRevMaterials.1.035602
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2017 | Journal Article | IST-REx-ID: 995 | OA
Bighin, G., & Lemeshko, M. (2017). Diagrammatic approach to orbital quantum impurities interacting with a many-particle environment. Physical Review B - Condensed Matter and Materials Physics. American Physical Society. https://doi.org/10.1103/PhysRevB.96.085410
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2017 | Journal Article | IST-REx-ID: 996 | OA
Shepperson, B., Chatterley, A., Søndergaard, A., Christiansen, L., Lemeshko, M., & Stapelfeldt, H. (2017). Strongly aligned molecules inside helium droplets in the near-adiabatic regime. The Journal of Chemical Physics. AIP. https://doi.org/10.1063/1.4983703
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2017 | Journal Article | IST-REx-ID: 997 | OA
Yakaboylu, E., Deuchert, A., & Lemeshko, M. (2017). Emergence of non-abelian magnetic monopoles in a quantum impurity problem. APS Physics, Physical Review Letters. American Physiological Society. https://doi.org/10.1103/PhysRevLett.119.235301
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2017 | Conference Paper | IST-REx-ID: 998 | OA
Rebuffi, S. A., Kolesnikov, A., Sperl, G., & Lampert, C. (2017). iCaRL: Incremental classifier and representation learning (Vol. 2017, pp. 5533–5542). Presented at the CVPR: Computer Vision and Pattern Recognition, Honolulu, HA, United States: IEEE. https://doi.org/10.1109/CVPR.2017.587
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2017 | Conference Paper | IST-REx-ID: 999 | OA
Pentina, A., & Lampert, C. (2017). Multi-task learning with labeled and unlabeled tasks (Vol. 70, pp. 2807–2816). Presented at the ICML: International Conference on Machine Learning, Sydney, Australia: Omnipress.
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2017 | Journal Article | IST-REx-ID: 373
Coughlan, C., Ibáñez, M., Dobrozhan, O., Singh, A., Cabot, A., & Ryan, K. (2017). Compound copper chalcogenide nanocrystals. Chemical Reviews. American Chemical Society. https://doi.org/10.1021/acs.chemrev.6b00376
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2017 | Journal Article | IST-REx-ID: 374
Ortega, S., Ibáñez, M., Liu, Y., Zhang, Y., Kovalenko, M., Cadavid, D., & Cabot, A. (2017). Bottom up engineering of thermoelectric nanomaterials and devices from solution processed nanoparticle building blocks. Chemical Society Reviews. Royal Society of Chemistry. https://doi.org/10.1039/c6cs00567e
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2017 | Journal Article | IST-REx-ID: 375
Berestok, T., Guardia, P., Blanco, J., Nafria, R., Torruella, P., López Conesa, L., … Cabot, A. (2017). Tuning branching in ceria nanocrystals. Chemistry of Materials. American Chemical Society. https://doi.org/10.1021/acs.chemmater.7b00896
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2017 | Journal Article | IST-REx-ID: 391
Xu, Y., Chiu, J., Miao, L., He, H., Alpichshev, Z., Kapitulnik, A., … Wray, L. (2017). Disorder enabled band structure engineering of a topological insulator surface. Nature Communications. Nature Publishing Group. https://doi.org/10.1038/ncomms14081
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2017 | Journal Article | IST-REx-ID: 392 | OA
Vishik, I., Mahmood, F., Alpichshev, Z., Gedik, N., Higgins, J., & Greene, R. (2017). Ultrafast dynamics in the presence of antiferromagnetic correlations in electron doped cuprate La2 xCexCuO4±δ. Physical Review B. American Physical Society. https://doi.org/10.1103/PhysRevB.95.115125
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2017 | Journal Article | IST-REx-ID: 393 | OA
Alpichshev, Z., Sie, E., Mahmood, F., Cao, G., & Gedik, N. (2017). Origin of the exciton mass in the frustrated Mott insulator Na2IrO3. Physical Review B. American Physical Society. https://doi.org/10.1103/PhysRevB.96.235141
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