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7704 Publications


2007 | Journal Article | IST-REx-ID: 3973
Cohen Steiner D, Edelsbrunner H. 2007. Inequalities for the curvature of curves and surfaces. Foundations of Computational Mathematics. 7(4), 391–404.
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2007 | Conference Paper | IST-REx-ID: 3975
Bendich P, Cohen Steiner D, Edelsbrunner H, Harer J, Morozov D. 2007. Inferring local homology from sampled stratified spaces. FOCS: Foundations of Computer Science, 536–546.
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2007 | Journal Article | IST-REx-ID: 3976
Headd J, Ban YEA, Brown P, Edelsbrunner H, Vaidya M, Rudolph J. 2007. Protein-protein interfaces: Properties, preferences, and projections. Journal of Proteome Research. 6(7), 2576–2586.
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2007 | Journal Article | IST-REx-ID: 3977
Attali D, Edelsbrunner H. 2007. Inclusion-exclusion formulas from independent complexes. Discrete & Computational Geometry. 37(1), 59–77.
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2007 | Conference Paper | IST-REx-ID: 3981
Attali D, Edelsbrunner H, Harer J, Mileyko Y. 2007. Alpha-beta witness complexes. WADS: International Workshop on Algrithms and Data Structures, LNCS, vol. 4619, 386–397.
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2007 | Journal Article | IST-REx-ID: 4152
Rohde L, Heisenberg C-PJ. 2007. Zebrafish gastrulation: Cell movements, signals, and mechanisms. International Review of Cytology - A Survey of Cell Biology. 261, 159–192.
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2007 | Journal Article | IST-REx-ID: 4182
Krieg M, Arboleda Y, Müller D, Heisenberg C-PJ. 2007. The role of cell adhesion and contractility for germ layer morphogenesis during zebrafish gastrulation. European Journal of Cell Biology. 86(Supplement 1), 39–39.
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2007 | Journal Article | IST-REx-ID: 4205
Von Der Hardt S, Bakkers J, Inbal A, Carvalho L, Solnica Krezel L, Heisenberg C-PJ, Hammerschmidt M. 2007. The Bmp gradient of the zebrafish gastrula guides migrating lateral cells by regulating cell-cell adhesion. Current Biology. 17(6), 475–487.
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2007 | Journal Article | IST-REx-ID: 4225
Bollenbach MT, Vetsigian K, Kishony R. 2007. Evolution and multilevel optimization of the genetic code. Genome Research. 17(4), 401–404.
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2007 | Journal Article | IST-REx-ID: 4226
Kicheva A, Pantazis P, Bollenbach T, Kalaidzidis Y, Bittig T, Julicher F, Gonzalez Gaitan M. 2007. Kinetics of morphogen gradient formation. Science. 315(5811), 521–525.
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2007 | Conference Paper | IST-REx-ID: 4233
de Vladar H. 2007. Alternativas prebióticas para la síntesis de amino- ácidos y otras moléculas relacionadas. Ab Initio: Orígenes Del Universo, La Vida, Y La Inteligencia, 91–109.
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2007 | Journal Article | IST-REx-ID: 4234 | OA
de Vladar H, Pen I. 2007. Determinism, noise, and spurious estimations in a generalised model of population growth. Physica A. 373, 477–485.
View | DOI | Download Preprint (ext.) | arXiv
 

2007 | Journal Article | IST-REx-ID: 4246
Free A, Barton NH. 2007. Do evolution and ecology need the Gaia hypothesis? Trends in Ecology and Evolution. 22(11), 611–619.
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2007 | Journal Article | IST-REx-ID: 4247
Gardner A, West S, Barton NH. 2007. The relation between multilocus population genetics and social evolution theory. American Naturalist. 169(2), 207–226.
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2007 | Conference Paper | IST-REx-ID: 4342
Danowski P. 2007. Library 2.0 and User-Generated Content - What can the users do for us? WLIC: World Library and Information Congress.
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2007 | Journal Article | IST-REx-ID: 4343
Danowski P, Pfeifer B. 2007. Wikipedia und Normdateien: Wege der Vernetzung am Beispiel der Kooperation mit der Personennamendatei. Bibliothek - Forschung Und Praxis. 31(2), 149–155.
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2007 | Journal Article | IST-REx-ID: 4344
Danowski P, Heller L. 2007. Bibliothek 2.0 ? Wird alles anders? Bibliothek - Forschung Und Praxis. 31(2007), 130–136.
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2007 | Journal Article | IST-REx-ID: 4353
Binladen J, Gilbert MT, Bollback JP, Panitz F, Bendixen C, Nielsen R, Willerslev E. 2007. The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing. PLoS One. 2(2).
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2007 | Journal Article | IST-REx-ID: 4354
Freyhult E, Bollback JP, Gardner P. 2007. Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA. Genome Research. 17(1), 117–25.
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2007 | Journal Article | IST-REx-ID: 4355
Bollback JP, Huelsenbeck J. 2007. Clonal interference is alleviated by high mutation rates in large populations. Molecular Biology and Evolution. 24(6), 1397–1406.
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2007 | Journal Article | IST-REx-ID: 4356
Petersen L, Bollback JP, Dimmic M, Hubisz M, Nielsen R. 2007. Genes under positive selection in Escherichia coli. Genome Research. 17(9), 1336–1343.
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2007 | Conference Paper | IST-REx-ID: 4368
Nickovic D, Maler O. 2007. AMT: a property-based monitoring tool for analog systems. FORMATS: Formal Modeling and Analysis of Timed Systems, LNCS, , 304–319.
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2007 | Conference Paper | IST-REx-ID: 4370
Maler O, Nickovic D, Pnueli A. 2007. On synthesizing controllers from bounded-response properties. CAV: Computer Aided Verification, Lecture Notes in Computer Science, , 95–107.
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2007 | Conference Paper | IST-REx-ID: 4394
Bouillaguet C, Kuncak V, Wies T, Zee K, Rinard M. 2007. Using First-Order Theorem Provers in the Jahob Data Structure Verification System. VMCAI: Verification, Model Checking and Abstract Interpretation, LNCS 4349, , 74–88.
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2007 | Conference Paper | IST-REx-ID: 4398
Berdine J, Calcagno C, Cook B, Distefano D, O’Hearn P, Wies T, Yang H. 2007. Shape Analysis for Composite Data Structures. CAV: Computer Aided Verification, LNCS 4590, , 178–192.
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2007 | Conference Paper | IST-REx-ID: 4399
Beyer D, Henzinger TA, Singh V. 2007. Algorithms for interface synthesis. CAV: Computer Aided Verification, LNCS, vol. 4590, 4–19.
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2007 | Conference Paper | IST-REx-ID: 4402
Alur R, Cerny P, Chaudhuri S. 2007. Model Checking on Trees with Path Equivalences. TACAS: Tools and Algorithms for the Construction and Analysis of Systems, LNCS, , 664–678.
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2007 | Journal Article | IST-REx-ID: 4405
Schaub M, Henzinger TA, Fisher J. 2007. Qualitative networks: A symbolic approach to analyze biological signaling networks. BMC Systems Biology. 1(4).
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2007 | Journal Article | IST-REx-ID: 11116 | OA
Franz C, Walczak R, Yavuz S, Santarella R, Gentzel M, Askjaer P, Galy V, Hetzer M, Mattaj IW, Antonin W. 2007. MEL‐28/ELYS is required for the recruitment of nucleoporins to chromatin and postmitotic nuclear pore complex assembly. EMBO reports. 8(2), 165–172.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2007 | Journal Article | IST-REx-ID: 11115
Anderson DJ, Hetzer M. 2007. Nuclear envelope formation by chromatin-mediated reorganization of the endoplasmic reticulum. Nature Cell Biology. 9(10), 1160–1166.
View | DOI | PubMed | Europe PMC
 

2006 | Journal Article | IST-REx-ID: 2894
Calado D, Paixao T, Holmberg D, Haury M. 2006. Stochastic Monoallelic Expression of IL 10 in T Cells. Journal of Immunology. 177(8), 5358–5364.
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2006 | Book Chapter | IST-REx-ID: 2921
Kolmogorov V, Zabih R. 2006.Graph cut algorithms for binocular stereo with occlusions. In: Handbook of Mathematical Models in Computer Vision. , 423–427.
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2006 | Book Chapter | IST-REx-ID: 3002
Sauer M, Friml J. 2006.In vitro culture of Arabidopsis embryos. In: Somatic Embryogenesis. Plant Cell Monographs, vol. 2, 343–354.
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2006 | Journal Article | IST-REx-ID: 3005
Friml J, Benfey P, Benková E, Bennett M, Berleth T, Geldner N, Grebe M, Heisler M, Hejátko J, Jürgens G, Laux T, Lindsey K, Lukowitz W, Luschnig C, Offringa R, Scheres B, Swarup R, Torres Ruiz R, Weijers D, Zažímalová E. 2006. Apical-basal polarity: Why plant cells don’t stand on their heads. Trends in Plant Science. 11(1), 12–14.
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2006 | Journal Article | IST-REx-ID: 3006
Dhonukshe P, Baluška F, Schlicht M, Hlavacka A, Šamaj J, Friml J, Gadella T. 2006. Endocytosis of cell surface material mediates cell plate formation during plant cytokinesis. Developmental Cell. 10(1), 137–150.
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2006 | Journal Article | IST-REx-ID: 3007
Abas L, Benjamins R, Malenica N, Paciorek T, Wiśniewska J, Moulinier Anzola J, Sieberer T, Friml J, Luschnig C. 2006. Intracellular trafficking and proteolysis of the Arabidopsis auxin-efflux facilitator PIN2 are involved in root gravitropism. Nature Cell Biology. 8(3), 249–256.
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2006 | Journal Article | IST-REx-ID: 3008
Xu J, Hofhuis H, Heidstra R, Sauer M, Friml J, Scheres B. 2006. A molecular framework for plant regeneration. Science. 311(5759), 385–388.
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2006 | Journal Article | IST-REx-ID: 3009 | OA
Paciorek T, Friml J. 2006. Auxin signaling. Journal of Cell Science. 119(7), 1199–1202.
View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 

2006 | Journal Article | IST-REx-ID: 3010
Scarpella E, Marcos D, Friml J, Berleth T. 2006. Control of leaf vascular patterning by polar auxin transport. Genes and Development. 20(8), 1015–1027.
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2006 | Journal Article | IST-REx-ID: 3011
Wiśniewska J, Xu J, Seifertová D, Brewer P, Růžička K, Blilou I, Rouquié D, Benková E, Scheres B, Friml J. 2006. Polar PIN localization directs auxin flow in plants. Science. 312(5775).
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2006 | Journal Article | IST-REx-ID: 3012
Petrášek J, Mravec J, Bouchard R, Blakeslee J, Abas MF, Seifertová D, Wiśniewska J, Tadele Z, Kubeš M, Čovanová M, Dhonukshe P, Skůpa P, Benková E, Perry L, Křeček P, Lee O, Fink G, Geisler M, Murphy A, Luschnig C, Zažímalová E, Friml J. 2006. PIN proteins perform a rate-limiting function in cellular auxin efflux. Science. 312(5775), 914–918.
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2006 | Journal Article | IST-REx-ID: 3013
Paciorek T, Sauer M, Balla J, Wiśniewska J, Friml J. 2006. Immunocytochemical technique for protein localization in sections of plant tissues. Nature Protocols. 1(1), 104–107.
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2006 | Journal Article | IST-REx-ID: 3014
Brewer P, Heisler M, Hejátko J, Friml J, Benková E. 2006. In situ hybridization for mRNA detection in Arabidopsis tissue sections. Nature Protocols. 1(3), 1462–1467.
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2006 | Journal Article | IST-REx-ID: 3015
Sauer M, Paciorek T, Benková E, Friml J. 2006. Immunocytochemical techniques for whole mount in situ protein localization in plants. Nature Protocols. 1(1), 98–103.
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2006 | Journal Article | IST-REx-ID: 3016
Sauer M, Balla J, Luschnig C, Wiśniewska J, Reinöhl V, Friml J, Benková E. 2006. Canalization of auxin flow by Aux/IAA-ARF-dependent feedback regulation of PIN polarity. Genes and Development. 20(20), 2902–2911.
View | Files available | DOI
 

2006 | Journal Article | IST-REx-ID: 3017
Tanaka H, Dhonukshe P, Brewer P, Friml J. 2006. Spatiotemporal asymmetric auxin distribution: A means to coordinate plant development. Cellular and Molecular Life Sciences. 63(23), 2738–2754.
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2006 | Journal Article | IST-REx-ID: 3018
Kleine Vehn J, Dhonukshe P, Swarup R, Bennett M, Friml J. 2006. Subcellular trafficking of the Arabidopsis auxin influx carrier AUX1 uses a novel pathway distinct from PIN1. Plant Cell. 18(11), 3171–3181.
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2006 | Journal Article | IST-REx-ID: 3020
Hejátko J, Blilou I, Brewer P, Friml J, Scheres B, Benková E. 2006. In situ hybridization technique for mRNA detection in whole mount Arabidopsis samples. Nature Protocols. 1(4), 1939–1946.
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2006 | Journal Article | IST-REx-ID: 3152
Kunwar P, Siekhaus DE, Lehmann R. 2006. In vivo migration A germ cell perspective. Annual Review of Cell and Developmental Biology. 22, 237–265.
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2006 | Conference Paper | IST-REx-ID: 3180
Szeliski R, Zabih R, Scharstein D, Veksler O, Kolmogorov V, Agarwala A, Tappen M, Rother C. 2006. A comparative study of energy minimization methods for Markov random fields. ECCV: European Conference on Computer Vision vol. 3952, 16–29.
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