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5698 Publications
2025 | Published | Thesis | IST-REx-ID: 19386
Evolution of sex chromosomes, sex determination and asexuality in Artemia brine shrimp
Elkrewi, Marwan N, Evolution of sex chromosomes, sex determination and asexuality in Artemia brine shrimp. 2025
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Elkrewi, Marwan N, Evolution of sex chromosomes, sex determination and asexuality in Artemia brine shrimp. 2025
2025 | Epub ahead of print | Journal Article | IST-REx-ID: 19003 |

Super-resolution expansion microscopy in plant roots
M.C. Gallei, S.M. Truckenbrodt, C. Kreuzinger, S. Inumella, V. Vistunou, C.M. Sommer, M. Tavakoli, N. Agudelo Duenas, J. Vorlaufer, W. Jahr, M. Randuch, A.J. Johnson, E. Benková, J. Friml, J.G. Danzl, The Plant Cell (2025).
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M.C. Gallei, S.M. Truckenbrodt, C. Kreuzinger, S. Inumella, V. Vistunou, C.M. Sommer, M. Tavakoli, N. Agudelo Duenas, J. Vorlaufer, W. Jahr, M. Randuch, A.J. Johnson, E. Benková, J. Friml, J.G. Danzl, The Plant Cell (2025).
2025 | Research Data | IST-REx-ID: 18991 |

Research data for the publication "Learning reshapes the hippocampal representation hierarchy"
H.S.C. Chiossi, (2025).
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H.S.C. Chiossi, (2025).
2025 | Published | Journal Article | IST-REx-ID: 19453 |

Learning reshapes the hippocampal representation hierarchy
H.S.C. Chiossi, M. Nardin, G. Tkačik, J.L. Csicsvari, Proceedings of the National Academy of Sciences 122 (2025).
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H.S.C. Chiossi, M. Nardin, G. Tkačik, J.L. Csicsvari, Proceedings of the National Academy of Sciences 122 (2025).
2025 | Published | Thesis | IST-REx-ID: 19271
Asymmetrical modulation of fear expression via GABAB receptors in the mouse medial habenula
C. Önal, Asymmetrical Modulation of Fear Expression via GABAB Receptors in the Mouse Medial Habenula, Institute of Science and Technology Austria, 2025.
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C. Önal, Asymmetrical Modulation of Fear Expression via GABAB Receptors in the Mouse Medial Habenula, Institute of Science and Technology Austria, 2025.
2025 | Published | Thesis | IST-REx-ID: 19395 |

Cell-Surface Auxin Signaling: Linking molecular pathways to plant development
Monzer, Aline, Cell-Surface Auxin Signaling: Linking molecular pathways to plant development. 2025
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Monzer, Aline, Cell-Surface Auxin Signaling: Linking molecular pathways to plant development. 2025
2025 | Draft | Preprint | IST-REx-ID: 19399 |

ABP1/ABL3-TMK1 cell-surface auxin signaling directly targets PIN2-mediated auxin fluxes for root gravitropism
Rodriguez Solovey L, Fiedler L, Zou M, Giannini C, Monzer A, Vladimirtsev D, Randuch M, Yu Y, Gelová Z, Verstraeten I, Hajny J, Chen M, Tan S, Hörmayer L, Li L, Marques-Bueno MM, Quddoos Z, Molnar G, Xu T, Kulich I, Jaillais Y, Friml J. ABP1/ABL3-TMK1 cell-surface auxin signaling directly targets PIN2-mediated auxin fluxes for root gravitropism. bioRxiv, 10.1101/2022.11.30.518503.
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Rodriguez Solovey L, Fiedler L, Zou M, Giannini C, Monzer A, Vladimirtsev D, Randuch M, Yu Y, Gelová Z, Verstraeten I, Hajny J, Chen M, Tan S, Hörmayer L, Li L, Marques-Bueno MM, Quddoos Z, Molnar G, Xu T, Kulich I, Jaillais Y, Friml J. ABP1/ABL3-TMK1 cell-surface auxin signaling directly targets PIN2-mediated auxin fluxes for root gravitropism. bioRxiv, 10.1101/2022.11.30.518503.
2025 | Draft | Preprint | IST-REx-ID: 19398 |

TMK interacting network of receptor like kinases for auxin canalization and beyond
A. Monzer, E. Mazur, L. Rodriguez Solovey, M.C. Gallei, M. Zou, M. Smejkal, E. Cervenova, J. Friml, BioRxiv (n.d.).
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A. Monzer, E. Mazur, L. Rodriguez Solovey, M.C. Gallei, M. Zou, M. Smejkal, E. Cervenova, J. Friml, BioRxiv (n.d.).
2025 | Published | Thesis | IST-REx-ID: 19431
Regulation of Cytoplasmic RNA Polymerase II
Hlavata, Annamaria, Regulation of Cytoplasmic RNA Polymerase II. 2025
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Hlavata, Annamaria, Regulation of Cytoplasmic RNA Polymerase II. 2025
2025 | Published | Thesis | IST-REx-ID: 19456
The role of prefrontal spatial coding in supporting a contextual association task
Cumpelik, Andrea D, The role of prefrontal spatial coding in supporting a contextual association task. 2025
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Cumpelik, Andrea D, The role of prefrontal spatial coding in supporting a contextual association task. 2025
2025 | Published | Journal Article | IST-REx-ID: 19438 |

Short INDELs and SNPs as markers of evolutionary processes in hybrid zones
Perini, Samuel, Short INDELs and SNPs as markers of evolutionary processes in hybrid zones. Journal of Evolutionary Biology 38 (3). 2025
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Perini, Samuel, Short INDELs and SNPs as markers of evolutionary processes in hybrid zones. Journal of Evolutionary Biology 38 (3). 2025
2025 | Published | Journal Article | IST-REx-ID: 14647 |

Dual role of FOXG1 in regulating gliogenesis in the developing neocortex via the FGF signalling pathway
Bose, Mahima, Dual role of FOXG1 in regulating gliogenesis in the developing neocortex via the FGF signalling pathway. eLife 13. 2025
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Bose, Mahima, Dual role of FOXG1 in regulating gliogenesis in the developing neocortex via the FGF signalling pathway. eLife 13. 2025
2025 | Published | Journal Article | IST-REx-ID: 19433 |

Extremal, enumerative and probabilistic results on ordered hypergraph matchings
Anastos, Michael, Extremal, enumerative and probabilistic results on ordered hypergraph matchings. Forum of Mathematics, Sigma 13. 2025
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Anastos, Michael, Extremal, enumerative and probabilistic results on ordered hypergraph matchings. Forum of Mathematics, Sigma 13. 2025
2025 | Epub ahead of print | Journal Article | IST-REx-ID: 19465
Understanding the machinery that reads the genome
Bernecky, Carrie A, Understanding the machinery that reads the genome. Nature Reviews Molecular Cell Biology. 2025
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Bernecky, Carrie A, Understanding the machinery that reads the genome. Nature Reviews Molecular Cell Biology. 2025
2024 | Published | Journal Article | IST-REx-ID: 18604 |

Removing popular faces in curve arrangements
P. De Nooijer, S. Terziadis, A. Weinberger, Z. Masárová, T. Mchedlidze, M. Löffler, G. Rote, Journal of Graph Algorithms and Applications 28 (2024) 47–82.
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P. De Nooijer, S. Terziadis, A. Weinberger, Z. Masárová, T. Mchedlidze, M. Löffler, G. Rote, Journal of Graph Algorithms and Applications 28 (2024) 47–82.
2024 | Published | Journal Article | IST-REx-ID: 18596 |

A decoy receptor derived from alternative splicing fine-tunes cytokinin signaling in Arabidopsis
M. Králová, I. Kubalová, J. Hajný, K. Kubiasova, K. Vagaská, Z. Ge, M.C. Gallei, H. Semerádová, A. Kuchařová, M. Hönig, A. Monzer, M. Kovačik, J. Friml, O. Novák, E. Benková, Y. Ikeda, D. Zalabák, Molecular Plant 17 (2024) 1850–1865.
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M. Králová, I. Kubalová, J. Hajný, K. Kubiasova, K. Vagaská, Z. Ge, M.C. Gallei, H. Semerádová, A. Kuchařová, M. Hönig, A. Monzer, M. Kovačik, J. Friml, O. Novák, E. Benková, Y. Ikeda, D. Zalabák, Molecular Plant 17 (2024) 1850–1865.
2024 | Published | Journal Article | IST-REx-ID: 18602 |

Strong hole-photon coupling in planar Ge for probing charge degree and strongly correlated states
F. De Palma, F. Oppliger, W. Jang, S. Bosco, M. Janik, S. Calcaterra, G. Katsaros, G. Isella, D. Loss, P. Scarlino, Nature Communications 15 (2024).
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F. De Palma, F. Oppliger, W. Jang, S. Bosco, M. Janik, S. Calcaterra, G. Katsaros, G. Isella, D. Loss, P. Scarlino, Nature Communications 15 (2024).
2024 | Epub ahead of print | Conference Paper | IST-REx-ID: 18600 |

Tools at the Frontiers of Quantitative Verification: QComp 2023 Competition Report
Andriushchenko R, Bork A, Budde CE, Češka M, Grover K, Hahn EM, Hartmanns A, Israelsen B, Jansen N, Jeppson J, Junges S, Köhl MA, Könighofer B, Kretinsky J, Meggendorfer T, Parker D, Pranger S, Quatmann T, Ruijters E, Taylor L, Volk M, Weininger M, Zhang Z. 2024. Tools at the Frontiers of Quantitative Verification: QComp 2023 Competition Report. TOOLympics Challenge 2023. , LNCS, vol. 14550, 90–146.
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Andriushchenko R, Bork A, Budde CE, Češka M, Grover K, Hahn EM, Hartmanns A, Israelsen B, Jansen N, Jeppson J, Junges S, Köhl MA, Könighofer B, Kretinsky J, Meggendorfer T, Parker D, Pranger S, Quatmann T, Ruijters E, Taylor L, Volk M, Weininger M, Zhang Z. 2024. Tools at the Frontiers of Quantitative Verification: QComp 2023 Competition Report. TOOLympics Challenge 2023. , LNCS, vol. 14550, 90–146.
2024 | Epub ahead of print | Journal Article | IST-REx-ID: 18605 |

Moist convective scaling: Insights from an idealised model
L.N. Agasthya, C.J. Muller, M. Cheve, Quarterly Journal of the Royal Meteorological Society (2024).
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L.N. Agasthya, C.J. Muller, M. Cheve, Quarterly Journal of the Royal Meteorological Society (2024).
2024 | Published | Conference Paper | IST-REx-ID: 18599
Monitoring extended hypernode logic
M. Chalupa, T.A. Henzinger, A. Oliveira da Costa, in:, Integrated Formal Methods, Springer Nature, 2024, pp. 151–171.
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M. Chalupa, T.A. Henzinger, A. Oliveira da Costa, in:, Integrated Formal Methods, Springer Nature, 2024, pp. 151–171.