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5339 Publications

2009 | Published | Journal Article | IST-REx-ID: 3775 | OA
Barton, Nicholas H, and Jason Coe. “On the Application of Statistical Physics to Evolutionary Biology.” Journal of Theoretical Biology. Elsevier, 2009. https://doi.org/10.1016/j.jtbi.2009.03.019.
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2009 | Published | Journal Article | IST-REx-ID: 3780 | OA
Davison, Angus, Nicholas H Barton, and Bryan Clarke. “The Effect of Chirality Phenotype and Genotype on the Fecundity and Viability of Partula Suturalis and Lymnaea Stagnalis: Implications for the Evolution of Sinistral Snails.” Journal of Evolutionary Biology. Wiley, 2009. https://doi.org/10.1111/j.1420-9101.2009.01770.x.
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2009 | Published | Conference Paper | IST-REx-ID: 3837 | OA
Tripakis, Stavros, Ben Lickly, Thomas A Henzinger, and Edward Lee. “On Relational Interfaces.” In EMSOFT ’09 Proceedings of the Seventh ACM International Conference on Embedded Software, 67–76. ACM, 2009. https://doi.org/10.1145/1629335.1629346.
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2009 | Published | Conference Paper | IST-REx-ID: 3841 | OA
Henzinger, Thomas A, Barbara Jobstmann, and Verena Wolf. “Formalisms for Specifying Markovian Population Models,” 5797:3–23. Springer, 2009. https://doi.org/10.1007/978-3-642-04420-5_2.
[Submitted Version] View | Files available | DOI
 
2009 | Published | Conference Paper | IST-REx-ID: 3843 | OA
Didier, Frédéric, Thomas A Henzinger, Maria Mateescu, and Verena Wolf. “Fast Adaptive Uniformization of the Chemical Master Equation,” 4:118–27. IEEE, 2009. https://doi.org/10.1109/HiBi.2009.23.
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2009 | Published | Conference Paper | IST-REx-ID: 3844 | OA
Henzinger, Thomas A, Christoph Kirsch, Eduardo Marques, and Ana Sokolova. “Distributed, Modular HTL,” 171–80. IEEE, 2009. https://doi.org/10.1109/RTSS.2009.9.
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2009 | Published | Journal Article | IST-REx-ID: 3870 | OA
Chatterjee, Krishnendu, Thomas A Henzinger, and Florian Horn. “Finitary Winning in Omega-Regular Games.” ACM Transactions on Computational Logic (TOCL). ACM, 2009. https://doi.org/10.1145/1614431.1614432.
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2009 | Published | Conference Paper | IST-REx-ID: 3871 | OA
Chatterjee, Krishnendu, Laurent Doyen, and Thomas A Henzinger. “Probabilistic Weighted Automata,” 5710:244–58. Springer, 2009. https://doi.org/10.1007/978-3-642-04081-8_17.
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2009 | Published | Conference Paper | IST-REx-ID: 3968 | OA
Edelsbrunner, Herbert, and John Harer. “The Persistent Morse Complex Segmentation of a 3-Manifold,” 5903:36–50. Springer, 2009. https://doi.org/10.1007/978-3-642-10470-1_4.
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2009 | Published | Journal Article | IST-REx-ID: 4136 | OA
Polechova, Jitka, Nicholas H Barton, and Glenn Marion. “Species’ Range: Adaptation in Space and Time.” American Naturalist. University of Chicago Press, 2009. https://doi.org/10.1086/605958.
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2008 | Published | Journal Article | IST-REx-ID: 9537
Zilberman, Daniel. “The Evolving Functions of DNA Methylation.” Current Opinion in Plant Biology. Elsevier , 2008. https://doi.org/10.1016/j.pbi.2008.07.004.
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2008 | Published | Journal Article | IST-REx-ID: 9457 | OA
Zilberman, Daniel, Devin Coleman-Derr, Tracy Ballinger, and Steven Henikoff. “Histone H2A.Z and DNA Methylation Are Mutually Antagonistic Chromatin Marks.” Nature. Springer Nature, 2008. https://doi.org/10.1038/nature07324.
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2008 | Published | Journal Article | IST-REx-ID: 517
Barton, Nicholas H. “Identity and Coalescence in Structured Populations: A Commentary on ‘Inbreeding Coefficients and Coalescence Times’ by Montgomery Slatkin.” Genetics Research. Cambridge University Press, 2008. https://doi.org/10.1017/S0016672308009683.
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2007 | Published | Journal Article | IST-REx-ID: 9487 | OA
Penterman, Jon, Daniel Zilberman, Jin Hoe Huh, Tracy Ballinger, Steven Henikoff, and Robert L. Fischer. “DNA Demethylation in the Arabidopsis Genome.” Proceedings of the National Academy of Sciences. National Academy of Sciences, 2007. https://doi.org/10.1073/pnas.0701861104.
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2007 | Published | Other Publication | IST-REx-ID: 9504
Zilberman, Daniel. The Human Promoter Methylome. Nature Genetics. Vol. 39. Nature Publishing Group, 2007. https://doi.org/10.1038/ng0407-442.
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2007 | Published | Journal Article | IST-REx-ID: 9524 | OA
Zilberman, Daniel, and Steven Henikoff. “Genome-Wide Analysis of DNA Methylation Patterns.” Development. The Company of Biologists, 2007. https://doi.org/10.1242/dev.001131.
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2007 | Published | Journal Article | IST-REx-ID: 12201
Feng, Xiaoqi, and Hugh G. Dickinson. “Packaging the Male Germline in Plants.” Trends in Genetics. Elsevier BV, 2007. https://doi.org/10.1016/j.tig.2007.08.005.
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2006 | Published | Journal Article | IST-REx-ID: 9505
Zilberman, Daniel, Mary Gehring, Robert K. Tran, Tracy Ballinger, and Steven Henikoff. “Genome-Wide Analysis of Arabidopsis Thaliana DNA Methylation Uncovers an Interdependence between Methylation and Transcription.” Nature Genetics. Nature Publishing Group, 2006. https://doi.org/10.1038/ng1929.
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2005 | Published | Journal Article | IST-REx-ID: 9491 | OA
Tran, Robert K., Jorja G. Henikoff, Daniel Zilberman, Renata F. Ditt, Steven E. Jacobsen, and Steven Henikoff. “DNA Methylation Profiling Identifies CG Methylation Clusters in Arabidopsis Genes.” Current Biology. Elsevier, 2005. https://doi.org/10.1016/j.cub.2005.01.008.
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2005 | Published | Journal Article | IST-REx-ID: 9514 | OA
Tran, Robert K., Daniel Zilberman, Cecilia de Bustos, Renata F. Ditt, Jorja G. Henikoff, Anders M. Lindroth, Jeffrey Delrow, et al. “Chromatin and SiRNA Pathways Cooperate to Maintain DNA Methylation of Small Transposable Elements in Arabidopsis.” Genome Biology. Springer Nature, 2005. https://doi.org/10.1186/gb-2005-6-11-r90.
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