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5339 Publications

2009 | Published | Journal Article | IST-REx-ID: 3775 | OA
Barton, N. H., & Coe, J. (2009). On the application of statistical physics to evolutionary biology. Journal of Theoretical Biology. Elsevier. https://doi.org/10.1016/j.jtbi.2009.03.019
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2009 | Published | Journal Article | IST-REx-ID: 3780 | OA
Davison, A., Barton, N. H., & Clarke, B. (2009). The effect of chirality phenotype and genotype on the fecundity and viability of Partula suturalis and Lymnaea stagnalis: Implications for the evolution of sinistral snails. Journal of Evolutionary Biology. Wiley. https://doi.org/10.1111/j.1420-9101.2009.01770.x
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2009 | Published | Conference Paper | IST-REx-ID: 3837 | OA
Tripakis, S., Lickly, B., Henzinger, T. A., & Lee, E. (2009). On relational interfaces. In EMSOFT ’09 Proceedings of the seventh ACM international conference on Embedded software (pp. 67–76). Grenoble, France: ACM. https://doi.org/10.1145/1629335.1629346
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2009 | Published | Conference Paper | IST-REx-ID: 3841 | OA
Henzinger, T. A., Jobstmann, B., & Wolf, V. (2009). Formalisms for specifying Markovian population models (Vol. 5797, pp. 3–23). Presented at the RP: Reachability Problems, Palaiseau, France: Springer. https://doi.org/10.1007/978-3-642-04420-5_2
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2009 | Published | Conference Paper | IST-REx-ID: 3843 | OA
Didier, F., Henzinger, T. A., Mateescu, M., & Wolf, V. (2009). Fast adaptive uniformization of the chemical master equation (Vol. 4, pp. 118–127). Presented at the HIBI: High-Performance Computational Systems Biology, Trento, Italy: IEEE. https://doi.org/10.1109/HiBi.2009.23
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2009 | Published | Conference Paper | IST-REx-ID: 3844 | OA
Henzinger, T. A., Kirsch, C., Marques, E., & Sokolova, A. (2009). Distributed, modular HTL (pp. 171–180). Presented at the RTSS: Real-Time Systems Symposium, Washington, DC, United States: IEEE. https://doi.org/10.1109/RTSS.2009.9
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2009 | Published | Journal Article | IST-REx-ID: 3870 | OA
Chatterjee, K., Henzinger, T. A., & Horn, F. (2009). Finitary winning in omega-regular games. ACM Transactions on Computational Logic (TOCL). ACM. https://doi.org/10.1145/1614431.1614432
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2009 | Published | Conference Paper | IST-REx-ID: 3871 | OA
Chatterjee, K., Doyen, L., & Henzinger, T. A. (2009). Probabilistic weighted automata (Vol. 5710, pp. 244–258). Presented at the CONCUR: Concurrency Theory, Bologna, Italy: Springer. https://doi.org/10.1007/978-3-642-04081-8_17
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2009 | Published | Conference Paper | IST-REx-ID: 3968 | OA
Edelsbrunner, H., & Harer, J. (2009). The persistent Morse complex segmentation of a 3-manifold (Vol. 5903, pp. 36–50). Presented at the 3DPH: Modelling the Physiological Human, Zermatt, Switzerland: Springer. https://doi.org/10.1007/978-3-642-10470-1_4
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2009 | Published | Journal Article | IST-REx-ID: 4136 | OA
Polechova, J., Barton, N. H., & Marion, G. (2009). Species’ range: Adaptation in space and time. American Naturalist. University of Chicago Press. https://doi.org/10.1086/605958
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2008 | Published | Journal Article | IST-REx-ID: 9537
Zilberman, D. (2008). The evolving functions of DNA methylation. Current Opinion in Plant Biology. Elsevier . https://doi.org/10.1016/j.pbi.2008.07.004
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2008 | Published | Journal Article | IST-REx-ID: 9457 | OA
Zilberman, D., Coleman-Derr, D., Ballinger, T., & Henikoff, S. (2008). Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks. Nature. Springer Nature. https://doi.org/10.1038/nature07324
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2008 | Published | Journal Article | IST-REx-ID: 517
Barton, N. H. (2008). Identity and coalescence in structured populations: A commentary on “Inbreeding coefficients and coalescence times” by Montgomery Slatkin. Genetics Research. Cambridge University Press. https://doi.org/10.1017/S0016672308009683
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2007 | Published | Journal Article | IST-REx-ID: 9487 | OA
Penterman, J., Zilberman, D., Huh, J. H., Ballinger, T., Henikoff, S., & Fischer, R. L. (2007). DNA demethylation in the Arabidopsis genome. Proceedings of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.0701861104
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2007 | Published | Other Publication | IST-REx-ID: 9504
Zilberman, D. (2007). The human promoter methylome. Nature Genetics (Vol. 39, pp. 442–443). Nature Publishing Group. https://doi.org/10.1038/ng0407-442
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2007 | Published | Journal Article | IST-REx-ID: 9524 | OA
Zilberman, D., & Henikoff, S. (2007). Genome-wide analysis of DNA methylation patterns. Development. The Company of Biologists. https://doi.org/10.1242/dev.001131
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2007 | Published | Journal Article | IST-REx-ID: 12201
Feng, X., & Dickinson, H. G. (2007). Packaging the male germline in plants. Trends in Genetics. Elsevier BV. https://doi.org/10.1016/j.tig.2007.08.005
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2006 | Published | Journal Article | IST-REx-ID: 9505
Zilberman, D., Gehring, M., Tran, R. K., Ballinger, T., & Henikoff, S. (2006). Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nature Genetics. Nature Publishing Group. https://doi.org/10.1038/ng1929
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2005 | Published | Journal Article | IST-REx-ID: 9491 | OA
Tran, R. K., Henikoff, J. G., Zilberman, D., Ditt, R. F., Jacobsen, S. E., & Henikoff, S. (2005). DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Current Biology. Elsevier. https://doi.org/10.1016/j.cub.2005.01.008
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2005 | Published | Journal Article | IST-REx-ID: 9514 | OA
Tran, R. K., Zilberman, D., de Bustos, C., Ditt, R. F., Henikoff, J. G., Lindroth, A. M., … Henikoff, S. (2005). Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. Genome Biology. Springer Nature. https://doi.org/10.1186/gb-2005-6-11-r90
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