Ryan John Cubero
Siegert Group
9 Publications
2022 | Journal Article | IST-REx-ID: 11478 |
![Open access file OA](https://research-explorer.ista.ac.at/images/access_open.png)
A systematic characterization of microglia-like cell occurrence during retinal organoid differentiation
K. Bartalska, V. Hübschmann, M. Korkut, R.J. Cubero, A. Venturino, K. Rössler, T. Czech, S. Siegert, IScience 25 (2022).
[Published Version]
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K. Bartalska, V. Hübschmann, M. Korkut, R.J. Cubero, A. Venturino, K. Rössler, T. Czech, S. Siegert, IScience 25 (2022).
2022 | Journal Article | IST-REx-ID: 12244 |
![Open access file OA](https://research-explorer.ista.ac.at/images/access_open.png)
A tool for mapping microglial morphology, morphOMICs, reveals brain-region and sex-dependent phenotypes
G. Colombo, R.J. Cubero, L. Kanari, A. Venturino, R. Schulz, M. Scolamiero, J. Agerberg, H. Mathys, L.-H. Tsai, W. Chachólski, K. Hess, S. Siegert, Nature Neuroscience 25 (2022) 1379–1393.
[Published Version]
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| PubMed | Europe PMC
G. Colombo, R.J. Cubero, L. Kanari, A. Venturino, R. Schulz, M. Scolamiero, J. Agerberg, H. Mathys, L.-H. Tsai, W. Chachólski, K. Hess, S. Siegert, Nature Neuroscience 25 (2022) 1379–1393.
2021 | Journal Article | IST-REx-ID: 9642 |
![Open access file OA](https://research-explorer.ista.ac.at/images/access_open.png)
Microglia enable mature perineuronal nets disassembly upon anesthetic ketamine exposure or 60-Hz light entrainment in the healthy brain
A. Venturino, R. Schulz, H. De Jesús-Cortés, M.E. Maes, B. Nagy, F. Reilly-Andújar, G. Colombo, R.J. Cubero, F.E. Schoot Uiterkamp, M.F. Bear, S. Siegert, Cell Reports 36 (2021).
[Published Version]
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| PubMed | Europe PMC
A. Venturino, R. Schulz, H. De Jesús-Cortés, M.E. Maes, B. Nagy, F. Reilly-Andújar, G. Colombo, R.J. Cubero, F.E. Schoot Uiterkamp, M.F. Bear, S. Siegert, Cell Reports 36 (2021).
2021 | Journal Article | IST-REx-ID: 9874 |
![Open access file OA](https://research-explorer.ista.ac.at/images/access_open.png)
A microRNA program regulates the balance between cardiomyocyte hyperplasia and hypertrophy and stimulates cardiac regeneration
Raso A, Dirkx E, Sampaio-Pinto V, el Azzouzi H, Cubero RJ, Sorensen DW, Ottaviani L, Olieslagers S, Huibers MM, de Weger R, Siddiqi S, Moimas S, Torrini C, Zentillin L, Braga L, Nascimento DS, da Costa Martins PA, van Berlo JH, Zacchigna S, Giacca M, De Windt LJ. 2021. A microRNA program regulates the balance between cardiomyocyte hyperplasia and hypertrophy and stimulates cardiac regeneration. Nature Communications. 12, 4808.
[Published Version]
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| PubMed | Europe PMC
Raso A, Dirkx E, Sampaio-Pinto V, el Azzouzi H, Cubero RJ, Sorensen DW, Ottaviani L, Olieslagers S, Huibers MM, de Weger R, Siddiqi S, Moimas S, Torrini C, Zentillin L, Braga L, Nascimento DS, da Costa Martins PA, van Berlo JH, Zacchigna S, Giacca M, De Windt LJ. 2021. A microRNA program regulates the balance between cardiomyocyte hyperplasia and hypertrophy and stimulates cardiac regeneration. Nature Communications. 12, 4808.
2020 | Journal Article | IST-REx-ID: 7369 |
![Open access file OA](https://research-explorer.ista.ac.at/images/access_open.png)
Multiscale relevance and informative encoding in neuronal spike trains
R.J. Cubero, M. Marsili, Y. Roudi, Journal of Computational Neuroscience 48 (2020) 85–102.
[Published Version]
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| Files available
| DOI
| WoS
R.J. Cubero, M. Marsili, Y. Roudi, Journal of Computational Neuroscience 48 (2020) 85–102.
2020 | Journal Article | IST-REx-ID: 7632 |
![Open access file OA](https://research-explorer.ista.ac.at/images/access_open.png)
Action representation in the mouse parieto-frontal network
T. Tombaz, B.A. Dunn, K. Hovde, R.J. Cubero, B. Mimica, P. Mamidanna, Y. Roudi, J.R. Whitlock, Scientific Reports 10 (2020).
[Published Version]
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T. Tombaz, B.A. Dunn, K. Hovde, R.J. Cubero, B. Mimica, P. Mamidanna, Y. Roudi, J.R. Whitlock, Scientific Reports 10 (2020).
2019 | Journal Article | IST-REx-ID: 7128 |
![Open access file OA](https://research-explorer.ista.ac.at/images/access_open.png)
Common regulatory pathways mediate activity of microRNAs inducing cardiomyocyte proliferation
C. Torrini, R.J. Cubero, E. Dirkx, L. Braga, H. Ali, G. Prosdocimo, M.I. Gutierrez, C. Collesi, D. Licastro, L. Zentilin, M. Mano, S. Zacchigna, M. Vendruscolo, M. Marsili, A. Samal, M. Giacca, Cell Reports 27 (2019) 2759–2771.e5.
[Published Version]
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| PubMed | Europe PMC
C. Torrini, R.J. Cubero, E. Dirkx, L. Braga, H. Ali, G. Prosdocimo, M.I. Gutierrez, C. Collesi, D. Licastro, L. Zentilin, M. Mano, S. Zacchigna, M. Vendruscolo, M. Marsili, A. Samal, M. Giacca, Cell Reports 27 (2019) 2759–2771.e5.
2019 | Journal Article | IST-REx-ID: 7130 |
![Open access file OA](https://research-explorer.ista.ac.at/images/access_open.png)
Statistical criticality arises in most informative representations
R.J. Cubero, J. Jo, M. Marsili, Y. Roudi, J. Song, Journal of Statistical Mechanics: Theory and Experiment 2019 (2019).
[Preprint]
View
| DOI
| Download Preprint (ext.)
| arXiv
R.J. Cubero, J. Jo, M. Marsili, Y. Roudi, J. Song, Journal of Statistical Mechanics: Theory and Experiment 2019 (2019).
2018 | Journal Article | IST-REx-ID: 7126 |
![Open access file OA](https://research-explorer.ista.ac.at/images/access_open.png)
Minimum description length codes are critical
R.J. Cubero, M. Marsili, Y. Roudi, Entropy 20 (2018).
[Published Version]
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| Files available
| DOI
R.J. Cubero, M. Marsili, Y. Roudi, Entropy 20 (2018).
9 Publications
2022 | Journal Article | IST-REx-ID: 11478 |
![Open access file OA](https://research-explorer.ista.ac.at/images/access_open.png)
A systematic characterization of microglia-like cell occurrence during retinal organoid differentiation
K. Bartalska, V. Hübschmann, M. Korkut, R.J. Cubero, A. Venturino, K. Rössler, T. Czech, S. Siegert, IScience 25 (2022).
[Published Version]
View
| Files available
| DOI
| WoS
K. Bartalska, V. Hübschmann, M. Korkut, R.J. Cubero, A. Venturino, K. Rössler, T. Czech, S. Siegert, IScience 25 (2022).
2022 | Journal Article | IST-REx-ID: 12244 |
![Open access file OA](https://research-explorer.ista.ac.at/images/access_open.png)
A tool for mapping microglial morphology, morphOMICs, reveals brain-region and sex-dependent phenotypes
G. Colombo, R.J. Cubero, L. Kanari, A. Venturino, R. Schulz, M. Scolamiero, J. Agerberg, H. Mathys, L.-H. Tsai, W. Chachólski, K. Hess, S. Siegert, Nature Neuroscience 25 (2022) 1379–1393.
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
G. Colombo, R.J. Cubero, L. Kanari, A. Venturino, R. Schulz, M. Scolamiero, J. Agerberg, H. Mathys, L.-H. Tsai, W. Chachólski, K. Hess, S. Siegert, Nature Neuroscience 25 (2022) 1379–1393.
2021 | Journal Article | IST-REx-ID: 9642 |
![Open access file OA](https://research-explorer.ista.ac.at/images/access_open.png)
Microglia enable mature perineuronal nets disassembly upon anesthetic ketamine exposure or 60-Hz light entrainment in the healthy brain
A. Venturino, R. Schulz, H. De Jesús-Cortés, M.E. Maes, B. Nagy, F. Reilly-Andújar, G. Colombo, R.J. Cubero, F.E. Schoot Uiterkamp, M.F. Bear, S. Siegert, Cell Reports 36 (2021).
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
A. Venturino, R. Schulz, H. De Jesús-Cortés, M.E. Maes, B. Nagy, F. Reilly-Andújar, G. Colombo, R.J. Cubero, F.E. Schoot Uiterkamp, M.F. Bear, S. Siegert, Cell Reports 36 (2021).
2021 | Journal Article | IST-REx-ID: 9874 |
![Open access file OA](https://research-explorer.ista.ac.at/images/access_open.png)
A microRNA program regulates the balance between cardiomyocyte hyperplasia and hypertrophy and stimulates cardiac regeneration
Raso A, Dirkx E, Sampaio-Pinto V, el Azzouzi H, Cubero RJ, Sorensen DW, Ottaviani L, Olieslagers S, Huibers MM, de Weger R, Siddiqi S, Moimas S, Torrini C, Zentillin L, Braga L, Nascimento DS, da Costa Martins PA, van Berlo JH, Zacchigna S, Giacca M, De Windt LJ. 2021. A microRNA program regulates the balance between cardiomyocyte hyperplasia and hypertrophy and stimulates cardiac regeneration. Nature Communications. 12, 4808.
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
Raso A, Dirkx E, Sampaio-Pinto V, el Azzouzi H, Cubero RJ, Sorensen DW, Ottaviani L, Olieslagers S, Huibers MM, de Weger R, Siddiqi S, Moimas S, Torrini C, Zentillin L, Braga L, Nascimento DS, da Costa Martins PA, van Berlo JH, Zacchigna S, Giacca M, De Windt LJ. 2021. A microRNA program regulates the balance between cardiomyocyte hyperplasia and hypertrophy and stimulates cardiac regeneration. Nature Communications. 12, 4808.
2020 | Journal Article | IST-REx-ID: 7369 |
![Open access file OA](https://research-explorer.ista.ac.at/images/access_open.png)
Multiscale relevance and informative encoding in neuronal spike trains
R.J. Cubero, M. Marsili, Y. Roudi, Journal of Computational Neuroscience 48 (2020) 85–102.
[Published Version]
View
| Files available
| DOI
| WoS
R.J. Cubero, M. Marsili, Y. Roudi, Journal of Computational Neuroscience 48 (2020) 85–102.
2020 | Journal Article | IST-REx-ID: 7632 |
![Open access file OA](https://research-explorer.ista.ac.at/images/access_open.png)
Action representation in the mouse parieto-frontal network
T. Tombaz, B.A. Dunn, K. Hovde, R.J. Cubero, B. Mimica, P. Mamidanna, Y. Roudi, J.R. Whitlock, Scientific Reports 10 (2020).
[Published Version]
View
| Files available
| DOI
| WoS
T. Tombaz, B.A. Dunn, K. Hovde, R.J. Cubero, B. Mimica, P. Mamidanna, Y. Roudi, J.R. Whitlock, Scientific Reports 10 (2020).
2019 | Journal Article | IST-REx-ID: 7128 |
![Open access file OA](https://research-explorer.ista.ac.at/images/access_open.png)
Common regulatory pathways mediate activity of microRNAs inducing cardiomyocyte proliferation
C. Torrini, R.J. Cubero, E. Dirkx, L. Braga, H. Ali, G. Prosdocimo, M.I. Gutierrez, C. Collesi, D. Licastro, L. Zentilin, M. Mano, S. Zacchigna, M. Vendruscolo, M. Marsili, A. Samal, M. Giacca, Cell Reports 27 (2019) 2759–2771.e5.
[Published Version]
View
| Files available
| DOI
| PubMed | Europe PMC
C. Torrini, R.J. Cubero, E. Dirkx, L. Braga, H. Ali, G. Prosdocimo, M.I. Gutierrez, C. Collesi, D. Licastro, L. Zentilin, M. Mano, S. Zacchigna, M. Vendruscolo, M. Marsili, A. Samal, M. Giacca, Cell Reports 27 (2019) 2759–2771.e5.
2019 | Journal Article | IST-REx-ID: 7130 |
![Open access file OA](https://research-explorer.ista.ac.at/images/access_open.png)
Statistical criticality arises in most informative representations
R.J. Cubero, J. Jo, M. Marsili, Y. Roudi, J. Song, Journal of Statistical Mechanics: Theory and Experiment 2019 (2019).
[Preprint]
View
| DOI
| Download Preprint (ext.)
| arXiv
R.J. Cubero, J. Jo, M. Marsili, Y. Roudi, J. Song, Journal of Statistical Mechanics: Theory and Experiment 2019 (2019).
2018 | Journal Article | IST-REx-ID: 7126 |
![Open access file OA](https://research-explorer.ista.ac.at/images/access_open.png)
Minimum description length codes are critical
R.J. Cubero, M. Marsili, Y. Roudi, Entropy 20 (2018).
[Published Version]
View
| Files available
| DOI
R.J. Cubero, M. Marsili, Y. Roudi, Entropy 20 (2018).