Speed of Adaptation in Population Genetics and Evolutionary Computation
Project Period: 2014-01-01 – 2016-12-31
Funder:
EC/FP7
Acronym
SAGE
Principal Investigator
Department(s)
Grant Number
618091
Funder
EC/FP7
15 Publications
2019 | Published | Journal Article | IST-REx-ID: 6637 | 
Surfing on the seascape: Adaptation in a changing environment
B. Trubenova, M. Krejca, P.K. Lehre, T. Kötzing, Evolution 73 (2019) 1356–1374.
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B. Trubenova, M. Krejca, P.K. Lehre, T. Kötzing, Evolution 73 (2019) 1356–1374.
2018 | Published | Journal Article | IST-REx-ID: 723 |
How to escape local optima in black box optimisation when non elitism outperforms elitism
P. Oliveto, T. Paixao, J. Pérez Heredia, D. Sudholt, B. Trubenova, Algorithmica 80 (2018) 1604–1633.
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P. Oliveto, T. Paixao, J. Pérez Heredia, D. Sudholt, B. Trubenova, Algorithmica 80 (2018) 1604–1633.
2017 | Published | Journal Article | IST-REx-ID: 954 |
On the mechanistic nature of epistasis in a canonical cis-regulatory element
M. Lagator, T. Paixao, N.H. Barton, J.P. Bollback, C.C. Guet, ELife 6 (2017).
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M. Lagator, T. Paixao, N.H. Barton, J.P. Bollback, C.C. Guet, ELife 6 (2017).
2017 | Published | Journal Article | IST-REx-ID: 910 |
When does frequency-independent selection maintain genetic variation?
S. Novak, N.H. Barton, Genetics 207 (2017) 653–668.
[Submitted Version]
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S. Novak, N.H. Barton, Genetics 207 (2017) 653–668.
2017 | Published | Journal Article | IST-REx-ID: 1336 |
Towards a runtime comparison of natural and artificial evolution
T. Paixao, J. Pérez Heredia, D. Sudholt, B. Trubenova, Algorithmica 78 (2017) 681–713.
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T. Paixao, J. Pérez Heredia, D. Sudholt, B. Trubenova, Algorithmica 78 (2017) 681–713.
2017 | Published | Journal Article | IST-REx-ID: 1351 |
Model checking the evolution of gene regulatory networks
M. Giacobbe, C.C. Guet, A. Gupta, T.A. Henzinger, T. Paixao, T. Petrov, Acta Informatica 54 (2017) 765–787.
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M. Giacobbe, C.C. Guet, A. Gupta, T.A. Henzinger, T. Paixao, T. Petrov, Acta Informatica 54 (2017) 765–787.
2017 | Published | Journal Article | IST-REx-ID: 1111 |
Selection limits to adaptive walks on correlated landscapes
J. Heredia, B. Trubenova, D. Sudholt, T. Paixao, Genetics 205 (2017) 803–825.
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J. Heredia, B. Trubenova, D. Sudholt, T. Paixao, Genetics 205 (2017) 803–825.
2017 | Published | Journal Article | IST-REx-ID: 1169 |
Spatial gene frequency waves under genotype dependent dispersal
S. Novak, R. Kollár, Genetics 205 (2017) 367–374.
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S. Novak, R. Kollár, Genetics 205 (2017) 367–374.
2017 | Published | Journal Article | IST-REx-ID: 1191 |
Existence of traveling waves for the generalized F–KPP equation
R. Kollár, S. Novak, Bulletin of Mathematical Biology 79 (2017) 525–559.
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R. Kollár, S. Novak, Bulletin of Mathematical Biology 79 (2017) 525–559.
2017 | Published | Journal Article | IST-REx-ID: 696 |
Stress induced mutagenesis: Stress diversity facilitates the persistence of mutator genes
M. Lukacisinova, S. Novak, T. Paixao, PLoS Computational Biology 13 (2017).
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M. Lukacisinova, S. Novak, T. Paixao, PLoS Computational Biology 13 (2017).
2016 | Published | Conference Paper | IST-REx-ID: 1349 |
When non-elitism outperforms elitism for crossing fitness valleys
P. Oliveto, T. Paixao, J. Heredia, D. Sudholt, B. Trubenova, in:, Proceedings of the Genetic and Evolutionary Computation Conference 2016 , ACM, 2016, pp. 1163–1170.
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P. Oliveto, T. Paixao, J. Heredia, D. Sudholt, B. Trubenova, in:, Proceedings of the Genetic and Evolutionary Computation Conference 2016 , ACM, 2016, pp. 1163–1170.
2016 | Published | Journal Article | IST-REx-ID: 1359 |
The effect of gene interactions on the long-term response to selection
T. Paixao, N.H. Barton, PNAS 113 (2016) 4422–4427.
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T. Paixao, N.H. Barton, PNAS 113 (2016) 4422–4427.
2015 | Published | Conference Paper | IST-REx-ID: 1430 |
First steps towards a runtime comparison of natural and artificial evolution
T. Paixao, D. Sudholt, J. Heredia, B. Trubenova, in:, Proceedings of the 2015 Annual Conference on Genetic and Evolutionary Computation, ACM, 2015, pp. 1455–1462.
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T. Paixao, D. Sudholt, J. Heredia, B. Trubenova, in:, Proceedings of the 2015 Annual Conference on Genetic and Evolutionary Computation, ACM, 2015, pp. 1455–1462.
2015 | Published | Journal Article | IST-REx-ID: 1542 |
Toward a unifying framework for evolutionary processes
T. Paixao, G. Badkobeh, N.H. Barton, D. Çörüş, D. Dang, T. Friedrich, P. Lehre, D. Sudholt, A. Sutton, B. Trubenova, Journal of Theoretical Biology 383 (2015) 28–43.
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T. Paixao, G. Badkobeh, N.H. Barton, D. Çörüş, D. Dang, T. Friedrich, P. Lehre, D. Sudholt, A. Sutton, B. Trubenova, Journal of Theoretical Biology 383 (2015) 28–43.
2015 | Published | Conference Paper | IST-REx-ID: 1835 |
Model checking gene regulatory networks
M. Giacobbe, C.C. Guet, A. Gupta, T.A. Henzinger, T. Paixao, T. Petrov, 9035 (2015) 469–483.
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M. Giacobbe, C.C. Guet, A. Gupta, T.A. Henzinger, T. Paixao, T. Petrov, 9035 (2015) 469–483.