Amplifiers of selection for the Moran process with both Birth-death and death-Birth updating

Svoboda J, Joshi SS, Tkadlec J, Chatterjee K. 2024. Amplifiers of selection for the Moran process with both Birth-death and death-Birth updating. PLoS Computational Biology. 20(3), e1012008.

Download
OA 2024_PloSComBio_Svoboda.pdf 1.43 MB [Published Version]

Journal Article | Published | English

Scopus indexed

Corresponding author has ISTA affiliation

Department
Abstract
Populations evolve by accumulating advantageous mutations. Every population has some spatial structure that can be modeled by an underlying network. The network then influences the probability that new advantageous mutations fixate. Amplifiers of selection are networks that increase the fixation probability of advantageous mutants, as compared to the unstructured fully-connected network. Whether or not a network is an amplifier depends on the choice of the random process that governs the evolutionary dynamics. Two popular choices are Moran process with Birth-death updating and Moran process with death-Birth updating. Interestingly, while some networks are amplifiers under Birth-death updating and other networks are amplifiers under death-Birth updating, so far no spatial structures have been found that function as an amplifier under both types of updating simultaneously. In this work, we identify networks that act as amplifiers of selection under both versions of the Moran process. The amplifiers are robust, modular, and increase fixation probability for any mutant fitness advantage in a range r ∈ (1, 1.2). To complement this positive result, we also prove that for certain quantities closely related to fixation probability, it is impossible to improve them simultaneously for both versions of the Moran process. Together, our results highlight how the two versions of the Moran process differ and what they have in common.
Publishing Year
Date Published
2024-03-29
Journal Title
PLoS Computational Biology
Publisher
Public Library of Science
Acknowledgement
We thank Gavin Rees for helpful discussions. J.S., S.J., and K.C were supported by European Research Council (ERC) CoG 863818 (ForM-SMArt). J.T was supported by Center for Foundations of Modern Computer Science (Charles University project UNCE/SCI/004) and by the project PRIMUS/24/SCI/012 from Charles University.
Volume
20
Issue
3
Article Number
e1012008
ISSN
eISSN
IST-REx-ID

Cite this

Svoboda J, Joshi SS, Tkadlec J, Chatterjee K. Amplifiers of selection for the Moran process with both Birth-death and death-Birth updating. PLoS Computational Biology. 2024;20(3). doi:10.1371/journal.pcbi.1012008
Svoboda, J., Joshi, S. S., Tkadlec, J., & Chatterjee, K. (2024). Amplifiers of selection for the Moran process with both Birth-death and death-Birth updating. PLoS Computational Biology. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1012008
Svoboda, Jakub, Soham Shrikant Joshi, Josef Tkadlec, and Krishnendu Chatterjee. “Amplifiers of Selection for the Moran Process with Both Birth-Death and Death-Birth Updating.” PLoS Computational Biology. Public Library of Science, 2024. https://doi.org/10.1371/journal.pcbi.1012008.
J. Svoboda, S. S. Joshi, J. Tkadlec, and K. Chatterjee, “Amplifiers of selection for the Moran process with both Birth-death and death-Birth updating,” PLoS Computational Biology, vol. 20, no. 3. Public Library of Science, 2024.
Svoboda J, Joshi SS, Tkadlec J, Chatterjee K. 2024. Amplifiers of selection for the Moran process with both Birth-death and death-Birth updating. PLoS Computational Biology. 20(3), e1012008.
Svoboda, Jakub, et al. “Amplifiers of Selection for the Moran Process with Both Birth-Death and Death-Birth Updating.” PLoS Computational Biology, vol. 20, no. 3, e1012008, Public Library of Science, 2024, doi:10.1371/journal.pcbi.1012008.
All files available under the following license(s):
Creative Commons Attribution 4.0 International Public License (CC-BY 4.0):
Main File(s)
Access Level
OA Open Access
Date Uploaded
2024-08-20
MD5 Checksum
a511cf369d9172beb123fe73f291b5cc


Export

Marked Publications

Open Data ISTA Research Explorer

Sources

arXiv 2401.14914

Search this title in

Google Scholar