BNClassifier: Classifying boolean models by dynamic properties
Beneš N, Brim L, Huvar O, Pastva S, Šafránek D. 2024. BNClassifier: Classifying boolean models by dynamic properties. Computational Methods in Systems Biology. , LNBI, vol. 14971, 19–26.
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Author
Beneš, Nikola;
Brim, Luboš;
Huvar, Ondřej;
Pastva, SamuelISTA 
;
Šafránek, David
;
Šafránek, DavidDepartment
Series Title
LNBI
Abstract
Partially Specified Boolean Networks (PSBNs) represent a family of Boolean models resulting from possible interpretations of unknown update logics. Hybrid extension of CTL (HCTL) has the power to express complex dynamical phenomena, such as oscillations or stability. We present BNClassifier to classify Boolean Networks corresponding to a given PSBN according to criteria specified in HCTL. The implementation of the tool is fully symbolic (based on BDDs). The results are visualised using the machine-learning-based technology of decision trees.
Publishing Year
Date Published
2024-09-19
Proceedings Title
Computational Methods in Systems Biology
Publisher
Springer Nature
Acknowledgement
The work has been supported by the Czech Science Foundation grant No. GA22-10845S. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie Grant Agreement No. 101034413.
Volume
14971
Page
19-26
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IST-REx-ID
Cite this
Beneš N, Brim L, Huvar O, Pastva S, Šafránek D. BNClassifier: Classifying boolean models by dynamic properties. In: Computational Methods in Systems Biology. Vol 14971. Springer Nature; 2024:19-26. doi:10.1007/978-3-031-71671-3_2
Beneš, N., Brim, L., Huvar, O., Pastva, S., & Šafránek, D. (2024). BNClassifier: Classifying boolean models by dynamic properties. In Computational Methods in Systems Biology (Vol. 14971, pp. 19–26). Springer Nature. https://doi.org/10.1007/978-3-031-71671-3_2
Beneš, Nikola, Luboš Brim, Ondřej Huvar, Samuel Pastva, and David Šafránek. “BNClassifier: Classifying Boolean Models by Dynamic Properties.” In Computational Methods in Systems Biology, 14971:19–26. Springer Nature, 2024. https://doi.org/10.1007/978-3-031-71671-3_2.
N. Beneš, L. Brim, O. Huvar, S. Pastva, and D. Šafránek, “BNClassifier: Classifying boolean models by dynamic properties,” in Computational Methods in Systems Biology, 2024, vol. 14971, pp. 19–26.
Beneš N, Brim L, Huvar O, Pastva S, Šafránek D. 2024. BNClassifier: Classifying boolean models by dynamic properties. Computational Methods in Systems Biology. , LNBI, vol. 14971, 19–26.
Beneš, Nikola, et al. “BNClassifier: Classifying Boolean Models by Dynamic Properties.” Computational Methods in Systems Biology, vol. 14971, Springer Nature, 2024, pp. 19–26, doi:10.1007/978-3-031-71671-3_2.
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